Query psy11830
Match_columns 387
No_of_seqs 401 out of 2097
Neff 8.7
Searched_HMMs 29240
Date Fri Aug 16 20:04:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11830.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11830hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4grv_A Neurotensin receptor ty 100.0 3.9E-30 1.3E-34 259.8 8.6 176 147-328 48-236 (510)
2 3v2y_A Sphingosine 1-phosphate 99.9 3.6E-28 1.2E-32 246.0 12.4 185 118-328 64-250 (520)
3 3vw7_A Proteinase-activated re 99.9 6.4E-28 2.2E-32 240.6 11.9 192 116-329 19-220 (484)
4 3uon_A Human M2 muscarinic ace 99.9 1.8E-27 6E-32 236.2 9.1 188 118-329 24-218 (467)
5 2rh1_A Beta-2-adrenergic recep 99.9 1.3E-27 4.6E-32 240.5 7.9 191 118-330 41-239 (500)
6 1u19_A Rhodopsin; G protein-co 99.9 1.1E-27 3.7E-32 228.6 5.7 192 117-330 38-237 (349)
7 2lnl_A C-X-C chemokine recepto 99.9 4.7E-27 1.6E-31 220.0 9.2 173 147-329 27-206 (296)
8 3odu_A C-X-C chemokine recepto 99.9 2.3E-27 8E-32 237.7 7.5 191 116-330 47-242 (502)
9 4dkl_A MU-type opioid receptor 99.9 1.7E-27 6E-32 235.9 5.8 190 117-329 17-213 (464)
10 3eml_A Human adenosine A2A rec 99.9 3.9E-27 1.3E-31 234.8 5.6 190 117-330 21-225 (488)
11 3pbl_A D(3) dopamine receptor, 99.9 2.1E-27 7.1E-32 236.8 3.2 185 120-330 41-230 (481)
12 3rze_A Histamine H1 receptor, 99.9 1.7E-27 5.7E-32 235.4 2.1 186 120-330 11-204 (452)
13 2ks9_A Substance-P receptor; w 99.9 2.4E-26 8.1E-31 221.0 9.5 188 118-329 33-228 (364)
14 4amj_A Beta-1 adrenergic recep 99.9 3.5E-27 1.2E-31 221.3 2.7 191 118-330 12-210 (315)
15 2z73_A Rhodopsin; visual pigme 99.9 1.7E-26 5.9E-31 228.8 5.2 193 117-331 34-234 (448)
16 4ea3_A Fusion protein of nocic 99.9 4.4E-26 1.5E-30 225.2 8.0 190 117-329 125-321 (434)
17 3sn6_R Lysozyme, beta-2 adrene 99.9 1E-26 3.5E-31 234.8 2.3 193 117-331 182-382 (514)
18 4eiy_A Adenosine receptor A2A/ 99.9 1.3E-26 4.3E-31 228.7 1.7 190 117-330 31-235 (447)
19 1hll_A Alpha-2A adrenergic rec 98.4 6.4E-08 2.2E-12 58.3 1.3 29 224-252 2-31 (32)
20 4ay9_X Follicle-stimulating ho 98.2 5.9E-07 2E-11 85.5 4.8 48 6-53 177-225 (350)
21 3g39_A Variable lymphocyte rec 98.1 1.9E-06 6.6E-11 73.2 4.2 56 5-62 29-84 (170)
22 2wfh_A SLIT homolog 2 protein 98.1 2.5E-06 8.6E-11 74.1 4.6 47 7-53 55-101 (193)
23 2r9u_A Variable lymphocyte rec 98.0 3.4E-06 1.2E-10 72.0 4.4 55 5-61 32-86 (174)
24 3g39_A Variable lymphocyte rec 98.0 5.4E-06 1.8E-10 70.4 4.7 54 6-61 54-107 (170)
25 2v9t_B SLIT homolog 2 protein 98.0 5.4E-06 1.8E-10 73.5 4.7 48 6-53 56-103 (220)
26 2r9u_A Variable lymphocyte rec 97.9 6.4E-06 2.2E-10 70.3 4.8 54 6-61 57-110 (174)
27 2v70_A SLIT-2, SLIT homolog 2 97.8 9.5E-06 3.2E-10 71.9 4.0 54 6-61 57-110 (220)
28 1w8a_A SLIT protein; signaling 97.8 1.1E-05 3.8E-10 69.8 4.3 48 6-53 29-77 (192)
29 2v9t_B SLIT homolog 2 protein 97.8 1.1E-05 3.7E-10 71.5 4.0 56 5-62 31-86 (220)
30 4g8a_A TOLL-like receptor 4; l 97.8 6.8E-06 2.3E-10 83.6 2.9 49 5-53 51-99 (635)
31 3e6j_A Variable lymphocyte rec 97.8 1.3E-05 4.5E-10 71.4 4.2 48 6-53 40-87 (229)
32 2v70_A SLIT-2, SLIT homolog 2 97.8 1.3E-05 4.5E-10 70.9 4.0 55 5-61 31-86 (220)
33 2wfh_A SLIT homolog 2 protein 97.8 1.4E-05 4.7E-10 69.4 4.0 70 5-77 30-100 (193)
34 2o6r_A Variable lymphocyte rec 97.8 1.8E-05 6.3E-10 67.2 4.4 48 6-53 28-75 (177)
35 4g8a_A TOLL-like receptor 4; l 97.7 1.6E-05 5.6E-10 80.8 4.2 55 6-62 76-130 (635)
36 2ifg_A High affinity nerve gro 97.7 2.2E-05 7.7E-10 74.1 4.3 57 6-64 31-88 (347)
37 3m19_A Variable lymphocyte rec 97.6 3.7E-05 1.3E-09 69.2 4.4 48 6-53 83-130 (251)
38 2o6s_A Variable lymphocyte rec 97.6 3.9E-05 1.3E-09 66.9 4.4 48 6-53 52-99 (208)
39 3sb4_A Hypothetical leucine ri 97.6 2.4E-05 8.3E-10 73.5 3.0 82 5-90 225-308 (329)
40 2o6r_A Variable lymphocyte rec 97.6 4.3E-05 1.5E-09 64.9 4.2 54 6-61 52-105 (177)
41 2xot_A Amphoterin-induced prot 97.6 3.4E-05 1.2E-09 73.6 3.9 48 6-53 39-87 (361)
42 2ifg_A High affinity nerve gro 97.6 3.6E-05 1.2E-09 72.7 4.0 49 6-54 56-104 (347)
43 2o6s_A Variable lymphocyte rec 97.5 5.3E-05 1.8E-09 66.0 4.4 55 5-61 27-81 (208)
44 3e6j_A Variable lymphocyte rec 97.5 5.5E-05 1.9E-09 67.3 4.4 68 6-75 64-131 (229)
45 3m19_A Variable lymphocyte rec 97.5 5.7E-05 2E-09 68.0 4.4 54 6-61 59-112 (251)
46 1p9a_G Platelet glycoprotein I 97.5 5.2E-05 1.8E-09 70.1 4.2 48 6-53 100-147 (290)
47 1w8a_A SLIT protein; signaling 97.5 5.9E-05 2E-09 65.1 4.1 55 6-62 54-108 (192)
48 2xwt_C Thyrotropin receptor; s 97.4 3.5E-05 1.2E-09 68.8 1.7 49 5-53 30-79 (239)
49 1p9a_G Platelet glycoprotein I 97.4 8.4E-05 2.9E-09 68.6 4.4 53 6-61 77-129 (290)
50 4ay9_X Follicle-stimulating ho 97.4 8.4E-05 2.9E-09 70.5 4.4 49 5-53 29-78 (350)
51 2xot_A Amphoterin-induced prot 97.4 9.1E-05 3.1E-09 70.5 4.0 71 6-78 64-135 (361)
52 2o6q_A Variable lymphocyte rec 97.4 0.00011 3.7E-09 66.9 4.4 48 6-53 109-156 (270)
53 2o6q_A Variable lymphocyte rec 97.4 0.00012 4.1E-09 66.6 4.4 48 6-53 37-84 (270)
54 3zyj_A Leucine-rich repeat-con 97.3 0.00012 4.1E-09 71.6 4.5 45 7-53 186-230 (440)
55 2z62_A TOLL-like receptor 4, v 97.2 0.00017 5.6E-09 65.7 3.9 56 4-61 26-81 (276)
56 3zyi_A Leucine-rich repeat-con 97.2 0.00018 6E-09 70.6 4.1 48 6-53 75-122 (452)
57 1a9n_A U2A', U2A'; complex (nu 97.2 0.00013 4.6E-09 61.8 2.8 45 7-53 43-87 (176)
58 1ozn_A Reticulon 4 receptor; N 97.2 0.00021 7.2E-09 65.3 4.3 48 6-53 105-152 (285)
59 3zyj_A Leucine-rich repeat-con 97.2 0.00019 6.6E-09 70.1 4.2 49 5-53 63-111 (440)
60 3rfs_A Internalin B, repeat mo 97.2 0.00023 8E-09 64.8 4.4 48 6-53 109-156 (272)
61 3zyi_A Leucine-rich repeat-con 97.2 0.00018 6E-09 70.6 3.8 45 7-53 197-241 (452)
62 2z62_A TOLL-like receptor 4, v 97.2 0.00022 7.7E-09 64.8 4.1 54 6-61 52-105 (276)
63 2xwt_C Thyrotropin receptor; s 97.2 0.00012 3.9E-09 65.3 2.1 48 6-53 55-104 (239)
64 3rfs_A Internalin B, repeat mo 97.2 0.00026 8.7E-09 64.5 4.4 48 6-53 85-132 (272)
65 1a9n_A U2A', U2A'; complex (nu 97.1 0.0001 3.4E-09 62.6 1.2 44 6-53 19-63 (176)
66 2z80_A TOLL-like receptor 2, v 97.1 0.00021 7.1E-09 67.6 2.8 49 5-53 51-99 (353)
67 1ozn_A Reticulon 4 receptor; N 97.1 0.00035 1.2E-08 63.9 4.2 55 5-61 31-85 (285)
68 2id5_A Lingo-1, leucine rich r 97.0 0.00032 1.1E-08 69.1 3.9 47 7-53 81-127 (477)
69 2id5_A Lingo-1, leucine rich r 97.0 0.00037 1.3E-08 68.6 4.1 47 7-53 225-271 (477)
70 3vq2_A TLR4, TOLL-like recepto 97.0 0.00038 1.3E-08 70.7 4.2 55 5-61 31-85 (606)
71 3o6n_A APL1; leucine-rich repe 97.0 0.00043 1.5E-08 66.3 4.4 47 7-53 70-116 (390)
72 2z80_A TOLL-like receptor 2, v 97.0 0.00026 8.8E-09 67.0 2.6 54 6-61 76-129 (353)
73 3t6q_A CD180 antigen; protein- 96.9 0.00045 1.5E-08 70.1 3.8 55 5-61 32-86 (606)
74 2z63_A TOLL-like receptor 4, v 96.9 0.00052 1.8E-08 68.9 3.9 49 5-53 27-75 (570)
75 3v47_A TOLL-like receptor 5B a 96.9 0.0005 1.7E-08 67.1 3.6 48 6-53 299-346 (455)
76 1dce_A Protein (RAB geranylger 96.9 0.0004 1.4E-08 70.4 3.0 37 8-46 443-479 (567)
77 1xku_A Decorin; proteoglycan, 96.9 0.0009 3.1E-08 62.4 5.1 55 5-61 51-105 (330)
78 1xku_A Decorin; proteoglycan, 96.9 0.00052 1.8E-08 64.1 3.5 48 6-53 192-239 (330)
79 2ell_A Acidic leucine-rich nuc 96.8 0.00046 1.6E-08 57.7 2.7 48 6-53 71-119 (168)
80 3rfe_A Platelet glycoprotein I 96.8 0.00065 2.2E-08 54.8 3.5 41 10-53 12-54 (130)
81 2z63_A TOLL-like receptor 4, v 96.8 0.00063 2.2E-08 68.3 4.1 48 6-53 52-99 (570)
82 3v47_A TOLL-like receptor 5B a 96.8 0.00064 2.2E-08 66.3 3.9 48 6-53 275-322 (455)
83 3o6n_A APL1; leucine-rich repe 96.8 0.00067 2.3E-08 64.9 3.9 48 6-53 45-92 (390)
84 3sb4_A Hypothetical leucine ri 96.8 0.0005 1.7E-08 64.4 2.8 72 6-80 49-149 (329)
85 2z66_A Variable lymphocyte rec 96.8 0.00077 2.6E-08 62.1 4.0 45 7-51 176-220 (306)
86 2z81_A CD282 antigen, TOLL-lik 96.8 0.00046 1.6E-08 69.1 2.6 48 6-53 26-73 (549)
87 1ziw_A TOLL-like receptor 3; i 96.8 0.00026 9E-09 73.0 0.7 48 6-53 536-583 (680)
88 2ft3_A Biglycan; proteoglycan, 96.8 0.0012 4E-08 61.8 5.1 55 5-61 53-107 (332)
89 2ft3_A Biglycan; proteoglycan, 96.8 0.0004 1.4E-08 65.0 1.8 48 6-53 193-240 (332)
90 1ziw_A TOLL-like receptor 3; i 96.7 0.00089 3.1E-08 68.9 4.4 48 6-53 73-120 (680)
91 2ell_A Acidic leucine-rich nuc 96.7 0.00046 1.6E-08 57.8 1.9 46 6-53 49-94 (168)
92 3oja_B Anopheles plasmodium-re 96.7 0.00089 3E-08 68.1 4.3 46 7-52 100-145 (597)
93 3vq2_A TLR4, TOLL-like recepto 96.7 0.00075 2.5E-08 68.5 3.7 54 6-61 56-109 (606)
94 3a79_B TLR6, VLRB.59, TOLL-lik 96.7 0.00085 2.9E-08 67.6 3.8 48 6-53 52-99 (562)
95 2z81_A CD282 antigen, TOLL-lik 96.6 0.0007 2.4E-08 67.7 2.5 71 6-78 50-122 (549)
96 3t6q_A CD180 antigen; protein- 96.6 0.001 3.6E-08 67.4 3.4 48 6-53 57-104 (606)
97 4b8c_D Glucose-repressible alc 96.5 0.00092 3.1E-08 69.8 2.7 37 8-45 249-285 (727)
98 3a79_B TLR6, VLRB.59, TOLL-lik 96.4 0.0022 7.5E-08 64.5 4.6 47 6-53 450-496 (562)
99 3oja_B Anopheles plasmodium-re 96.4 0.0019 6.4E-08 65.7 3.9 48 6-53 75-122 (597)
100 1dce_A Protein (RAB geranylger 96.4 0.0021 7.1E-08 65.1 4.1 80 6-90 463-544 (567)
101 2z66_A Variable lymphocyte rec 96.4 0.0017 5.7E-08 59.8 3.2 40 7-47 79-118 (306)
102 2je0_A Acidic leucine-rich nuc 96.3 0.00065 2.2E-08 55.6 0.1 46 5-53 16-63 (149)
103 2je0_A Acidic leucine-rich nuc 96.3 0.00072 2.5E-08 55.3 0.4 48 6-53 64-112 (149)
104 2z7x_B TOLL-like receptor 1, v 96.3 0.0012 4.2E-08 65.5 1.9 48 6-53 21-68 (520)
105 3j0a_A TOLL-like receptor 5; m 96.3 0.0024 8.2E-08 67.7 4.2 47 6-52 24-71 (844)
106 3j0a_A TOLL-like receptor 5; m 96.3 0.0025 8.7E-08 67.5 4.3 54 6-61 48-102 (844)
107 3o53_A Protein LRIM1, AGAP0063 96.3 0.0016 5.6E-08 60.5 2.5 45 6-50 144-189 (317)
108 4b8c_D Glucose-repressible alc 96.2 0.0016 5.3E-08 68.1 2.1 68 6-77 224-291 (727)
109 4fcg_A Uncharacterized protein 96.2 0.0029 1E-07 59.2 3.7 47 5-53 182-228 (328)
110 4fcg_A Uncharacterized protein 96.1 0.0026 8.8E-08 59.6 3.3 40 7-46 151-199 (328)
111 2z7x_B TOLL-like receptor 1, v 96.1 0.0031 1.1E-07 62.6 3.7 47 6-53 421-467 (520)
112 1wwl_A Monocyte differentiatio 95.9 0.0043 1.5E-07 57.4 3.5 44 7-50 229-273 (312)
113 3rgz_A Protein brassinosteroid 95.9 0.0068 2.3E-07 63.5 5.3 48 6-53 632-679 (768)
114 1ogq_A PGIP-2, polygalacturona 95.9 0.0027 9.4E-08 58.9 2.0 48 6-53 76-124 (313)
115 1xeu_A Internalin C; cellular 95.9 0.003 1E-07 57.1 2.2 39 6-46 106-144 (263)
116 3rw6_A Nuclear RNA export fact 95.8 0.0036 1.2E-07 56.9 2.5 41 7-47 171-213 (267)
117 1xeu_A Internalin C; cellular 95.8 0.0074 2.5E-07 54.5 4.5 44 6-53 41-84 (263)
118 3rfe_A Platelet glycoprotein I 95.7 0.0069 2.4E-07 48.7 3.7 40 4-43 29-68 (130)
119 1h6t_A Internalin B; cell adhe 95.7 0.0041 1.4E-07 57.1 2.5 44 6-53 134-177 (291)
120 3o53_A Protein LRIM1, AGAP0063 95.7 0.0075 2.6E-07 55.9 4.2 46 6-51 120-165 (317)
121 4ezg_A Putative uncharacterize 95.6 0.0055 1.9E-07 52.6 2.9 46 6-53 66-111 (197)
122 1wwl_A Monocyte differentiatio 95.6 0.0052 1.8E-07 56.8 2.9 44 6-50 95-140 (312)
123 1ogq_A PGIP-2, polygalacturona 95.6 0.0046 1.6E-07 57.3 2.5 47 6-53 50-100 (313)
124 2lnl_A C-X-C chemokine recepto 95.5 0.041 1.4E-06 49.9 8.4 44 84-127 24-67 (296)
125 4eco_A Uncharacterized protein 95.4 0.0044 1.5E-07 63.6 1.8 47 7-53 434-480 (636)
126 1h6u_A Internalin H; cell adhe 95.4 0.006 2E-07 56.5 2.4 39 7-47 130-168 (308)
127 3oja_A Leucine-rich immune mol 95.4 0.0058 2E-07 60.5 2.5 45 6-50 144-189 (487)
128 4glp_A Monocyte differentiatio 95.3 0.01 3.4E-07 54.8 3.6 46 6-51 224-272 (310)
129 4h09_A Hypothetical leucine ri 95.3 0.017 6E-07 54.7 5.4 73 6-82 263-336 (379)
130 1h6u_A Internalin H; cell adhe 95.3 0.0071 2.4E-07 55.9 2.5 40 6-47 85-124 (308)
131 3oja_A Leucine-rich immune mol 95.2 0.011 3.6E-07 58.6 3.8 46 6-53 34-79 (487)
132 4ezg_A Putative uncharacterize 95.2 0.014 5E-07 49.9 4.2 39 6-46 44-82 (197)
133 4eco_A Uncharacterized protein 95.2 0.011 3.8E-07 60.5 3.9 42 7-48 458-506 (636)
134 4ecn_A Leucine-rich repeat pro 95.1 0.0078 2.7E-07 64.0 2.7 51 7-61 549-600 (876)
135 1h6t_A Internalin B; cell adhe 95.1 0.0092 3.1E-07 54.7 2.7 39 6-46 112-150 (291)
136 4glp_A Monocyte differentiatio 95.1 0.018 6.1E-07 53.1 4.6 38 7-44 146-183 (310)
137 4fdw_A Leucine rich hypothetic 95.1 0.015 5.1E-07 56.1 4.2 47 6-53 248-299 (401)
138 4fdw_A Leucine rich hypothetic 95.0 0.011 3.8E-07 57.0 3.0 80 6-89 271-355 (401)
139 4fmz_A Internalin; leucine ric 95.0 0.01 3.5E-07 55.5 2.6 37 7-45 67-103 (347)
140 1m9s_A Internalin B; cell inva 94.9 0.017 6E-07 58.8 4.2 40 6-47 131-170 (605)
141 3rgz_A Protein brassinosteroid 94.8 0.013 4.6E-07 61.2 3.4 94 6-104 656-752 (768)
142 1ds9_A Outer arm dynein; leuci 94.8 0.0053 1.8E-07 52.7 0.2 40 6-47 48-87 (198)
143 4ecn_A Leucine-rich repeat pro 94.8 0.0078 2.7E-07 64.0 1.5 47 7-53 674-720 (876)
144 4fmz_A Internalin; leucine ric 94.7 0.014 4.7E-07 54.5 2.7 44 6-53 88-131 (347)
145 3cvr_A Invasion plasmid antige 94.5 0.017 5.7E-07 58.5 2.9 37 7-47 141-177 (571)
146 1ds9_A Outer arm dynein; leuci 94.3 0.003 1E-07 54.3 -2.6 40 6-46 70-109 (198)
147 3g06_A SSPH2 (leucine-rich rep 94.3 0.02 6.7E-07 58.6 3.0 17 30-46 221-237 (622)
148 4h09_A Hypothetical leucine ri 94.2 0.039 1.3E-06 52.2 4.7 53 6-61 286-338 (379)
149 1o6v_A Internalin A; bacterial 94.2 0.018 6.1E-07 56.4 2.4 40 6-47 68-107 (466)
150 3cvr_A Invasion plasmid antige 94.1 0.038 1.3E-06 55.9 4.5 38 6-47 160-197 (571)
151 1m9s_A Internalin B; cell inva 94.0 0.021 7.1E-07 58.2 2.4 38 7-46 88-125 (605)
152 4gt6_A Cell surface protein; l 93.8 0.026 8.9E-07 54.0 2.6 46 6-53 288-333 (394)
153 3bz5_A Internalin-J, INLJ; leu 93.4 0.044 1.5E-06 53.6 3.5 39 6-46 42-80 (457)
154 3g06_A SSPH2 (leucine-rich rep 93.2 0.072 2.5E-06 54.4 4.9 38 6-47 61-98 (622)
155 1jl5_A Outer protein YOPM; leu 93.1 0.047 1.6E-06 53.4 3.3 40 6-47 131-170 (454)
156 3bz5_A Internalin-J, INLJ; leu 93.1 0.05 1.7E-06 53.3 3.4 41 7-50 213-253 (457)
157 1o6v_A Internalin A; bacterial 93.1 0.044 1.5E-06 53.6 3.0 44 6-53 46-89 (466)
158 4fs7_A Uncharacterized protein 93.1 0.073 2.5E-06 50.8 4.5 71 6-81 297-368 (394)
159 4fs7_A Uncharacterized protein 92.5 0.11 3.6E-06 49.7 4.7 46 6-53 71-116 (394)
160 1jl5_A Outer protein YOPM; leu 92.2 0.072 2.5E-06 52.1 3.2 40 6-47 215-254 (454)
161 3v2y_A Sphingosine 1-phosphate 91.9 0.03 1E-06 55.7 -0.0 63 85-149 77-139 (520)
162 3goz_A Leucine-rich repeat-con 91.2 0.039 1.4E-06 52.0 0.1 47 6-52 22-73 (362)
163 4gt6_A Cell surface protein; l 89.4 0.29 9.8E-06 46.6 4.4 47 6-53 64-113 (394)
164 3goz_A Leucine-rich repeat-con 87.4 0.096 3.3E-06 49.3 -0.5 46 7-52 52-102 (362)
165 3uon_A Human M2 muscarinic ace 87.0 1.6 5.4E-05 41.8 8.0 47 84-130 36-82 (467)
166 2lz0_A Uncharacterized protein 86.7 0.83 2.8E-05 34.5 4.6 39 14-53 4-42 (100)
167 3pbl_A D(3) dopamine receptor, 85.1 2 7E-05 41.2 7.8 46 84-129 51-96 (481)
168 4grv_A Neurotensin receptor ty 85.0 0.12 4.2E-06 51.0 -1.1 46 85-130 46-94 (510)
169 4dkl_A MU-type opioid receptor 85.0 0.96 3.3E-05 43.2 5.4 41 84-124 30-70 (464)
170 2ca6_A RAN GTPase-activating p 83.0 0.16 5.4E-06 48.1 -1.3 41 6-46 274-319 (386)
171 2ast_B S-phase kinase-associat 83.0 0.14 4.9E-06 47.2 -1.6 48 5-53 69-117 (336)
172 3rw6_A Nuclear RNA export fact 82.7 0.56 1.9E-05 42.3 2.4 37 6-44 196-234 (267)
173 3odu_A C-X-C chemokine recepto 81.9 0.25 8.5E-06 48.1 -0.3 41 84-124 61-101 (502)
174 4ea3_A Fusion protein of nocic 81.5 2.9 0.0001 39.8 7.2 39 85-123 139-177 (434)
175 3rze_A Histamine H1 receptor, 81.2 0.26 8.9E-06 47.2 -0.5 47 84-130 21-67 (452)
176 2rh1_A Beta-2-adrenergic recep 80.6 0.18 6.2E-06 49.5 -1.9 47 84-130 53-99 (500)
177 2ast_B S-phase kinase-associat 80.3 0.52 1.8E-05 43.2 1.3 39 8-49 49-89 (336)
178 1u19_A Rhodopsin; G protein-co 80.0 0.26 8.8E-06 45.3 -1.0 44 85-128 52-95 (349)
179 3eml_A Human adenosine A2A rec 79.8 0.24 8E-06 48.0 -1.3 46 84-129 34-79 (488)
180 2ks9_A Substance-P receptor; w 79.7 0.26 8.8E-06 45.8 -1.1 44 84-127 45-88 (364)
181 4eiy_A Adenosine receptor A2A/ 78.0 0.25 8.7E-06 47.2 -1.7 45 84-128 44-88 (447)
182 2ca6_A RAN GTPase-activating p 77.3 0.5 1.7E-05 44.5 0.2 38 6-43 187-229 (386)
183 3vw7_A Proteinase-activated re 76.4 0.23 8E-06 48.1 -2.5 43 84-126 33-75 (484)
184 2z73_A Rhodopsin; visual pigme 76.1 0.43 1.5E-05 45.9 -0.7 41 84-124 47-87 (448)
185 3un9_A NLR family member X1; l 74.8 0.37 1.3E-05 45.6 -1.5 43 6-48 155-201 (372)
186 1z7x_W Ribonuclease inhibitor; 73.9 0.58 2E-05 45.0 -0.4 39 7-45 86-128 (461)
187 1io0_A Tropomodulin; LRR prote 68.2 0.71 2.4E-05 38.8 -1.1 45 6-50 36-85 (185)
188 4amj_A Beta-1 adrenergic recep 67.7 0.2 6.9E-06 45.2 -5.0 41 84-124 24-64 (315)
189 3un9_A NLR family member X1; l 66.3 0.85 2.9E-05 43.1 -1.1 45 6-50 126-175 (372)
190 3sn6_R Lysozyme, beta-2 adrene 65.6 0.39 1.3E-05 47.2 -3.8 44 85-128 196-239 (514)
191 1z7x_W Ribonuclease inhibitor; 63.4 0.83 2.8E-05 43.9 -1.8 40 7-46 29-72 (461)
192 2lot_A Apelin receptor; membra 61.3 1.3 4.3E-05 30.5 -0.7 16 147-162 44-59 (64)
193 3e4g_A ATP synthase subunit S, 57.7 6.3 0.00021 32.9 2.9 34 7-40 62-95 (176)
194 1io0_A Tropomodulin; LRR prote 55.9 2.9 9.8E-05 35.0 0.5 46 5-50 64-113 (185)
195 1pgv_A TMD-1, tropomodulin TMD 55.9 2.6 9E-05 36.0 0.3 47 6-52 41-92 (197)
196 2ra8_A Uncharacterized protein 50.7 3.6 0.00012 38.7 0.3 45 6-50 252-299 (362)
197 3ogk_B Coronatine-insensitive 48.7 3.4 0.00012 41.0 -0.3 40 5-44 462-502 (592)
198 3ogk_B Coronatine-insensitive 45.9 4.2 0.00014 40.3 -0.1 37 7-43 165-205 (592)
199 2ki9_A Cannabinoid receptor 2; 45.0 4.2 0.00014 23.5 -0.2 15 370-384 9-23 (33)
200 2lz0_A Uncharacterized protein 41.8 25 0.00085 26.1 3.8 42 6-48 20-61 (100)
201 2p1m_B Transport inhibitor res 39.7 5.6 0.00019 39.3 -0.3 38 6-43 456-494 (594)
202 2p1m_B Transport inhibitor res 33.4 13 0.00045 36.6 1.3 42 6-48 130-174 (594)
203 2ra8_A Uncharacterized protein 30.1 9.1 0.00031 35.8 -0.6 40 6-45 219-267 (362)
204 3e4g_A ATP synthase subunit S, 20.1 21 0.00071 29.7 -0.2 39 6-44 85-129 (176)
No 1
>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}
Probab=99.96 E-value=3.9e-30 Score=259.81 Aligned_cols=176 Identities=15% Similarity=0.250 Sum_probs=146.1
Q ss_pred hcccceeeeeeeccCC---CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccceeeccccCcccC-ccchhhhHHHHHHH
Q psy11830 147 KGNAAVLAVTLSRTSE---KSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQKG-YGCKVAGFVTVFAS 222 (387)
Q Consensus 147 ~gN~lvi~vi~~~~~l---~t~~~~~i~nLavaDll~~~~~~~~~~~~~~~~~~~~~~~~~w~~g-~~C~~~~~~~~~~~ 222 (387)
+||++|++++.++|++ ++++|+|++|||+||++++++.+|..+..... ..+.|.+| ..|++..++..++.
T Consensus 48 ~gN~lvi~~i~~~~~~r~~~~~~n~~i~~La~aDll~~~~~~p~~~~~~~~------~~~~w~~g~~~C~~~~~~~~~~~ 121 (510)
T 4grv_A 48 VGNSVTLFTLARKKSLQSLQSTVHYHLGSLALSDLLILLLAMPVELYNFIW------VHHPWAFGDAGCRGYYFLRDACT 121 (510)
T ss_dssp HHHHHHHHHTSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT------CCSSCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhheeeecCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hCCCEEhhHHHHHHHHHHHHHHH
Confidence 9999999999887655 47889999999999999999999988765432 23479999 89999999999999
Q ss_pred HHHHHHHHHHHHHHHhheeccccccc-cccchhhhhhHHHHHHHHHHhhhhhheecccC--------CceeeeccCcCcc
Q psy11830 223 QLSIFTLGMITLERWYSIKRALYANK-LTIHRTTYFILVGYVYASIMGALPMFGISSYS--------TTSICLPMDTRHL 293 (387)
Q Consensus 223 ~~Si~~L~~isidRy~aI~~P~~~~~-~t~~~~~~~i~~iWi~s~~~~~~p~~~~~~~~--------~~~~C~~~~~~~~ 293 (387)
.+|++++++||+|||+||++|++|++ .|++++..+++++|++++++++|+++.++... ....|.+.++...
T Consensus 122 ~~S~~~l~~is~dRy~ai~~P~~~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~ 201 (510)
T 4grv_A 122 YATALNVASLSVARYLAICHPFKAKTLMSRSRTKKFISAIWLASALLAIPMLFTMGLQNRSADGTHPGGLVCTPIVDTAT 201 (510)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCCCCCCCCSCCHHHHHHHHHHHHHHHTTHHHHEEEEECSSSSCCGGGEEEEECSCHHH
T ss_pred HHHHHHHHHHHHHheEEEeccccccccccccccceeehHHHHHHHHHHHHHHHhhcccccccCCCCCCccccccccccch
Confidence 99999999999999999999999999 99999999999999999999988887654211 2346776665544
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy11830 294 GSKIYVHTLLLFSSLVFAMICVCYFQIYSSLGNVL 328 (387)
Q Consensus 294 ~~~~~~~~~~~~~~iPl~ii~~~Y~~I~~~lr~~~ 328 (387)
...++.+..++.+++|+++|+++|.+|+++++++.
T Consensus 202 ~~~~~~~~~~~~f~iP~~ii~~~Y~~I~~~l~~~~ 236 (510)
T 4grv_A 202 VKVVIQVNTFMSFLFPMLVISILNTVIANKLTVMV 236 (510)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTSC
T ss_pred hhhhhhhhhhHHHhhhHHHHHHHHHHHHHHHHHHh
Confidence 44444445566679999999999999999998654
No 2
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A*
Probab=99.95 E-value=3.6e-28 Score=246.00 Aligned_cols=185 Identities=20% Similarity=0.212 Sum_probs=155.1
Q ss_pred HHHHHHHHHHhhccccccchhhchhhhhhhcccceeeeeeeccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccce
Q psy11830 118 LCMAFYLLLLAVKDLQSTEVYFNYAYDWQKGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEV 197 (387)
Q Consensus 118 ~~~~~~~~ii~~~~~~~~~~Y~~~a~~w~~gN~lvi~vi~~~~~l~t~~~~~i~nLavaDll~~~~~~~~~~~~~~~~~~ 197 (387)
.+..+..++++++|+ +||++|++++.+++++|+++|+|+.|||+||++++++.+|..+..
T Consensus 64 ~~~~~~~~~i~~~g~--------------~gN~lvi~vi~~~~~lr~~~~~~l~nLA~aDll~~~~~~p~~~~~------ 123 (520)
T 3v2y_A 64 KLTSVVFILICCFII--------------LENIFVLLTIWKTKKFHRPMYYFIGNLALSDLLAGVAYTANLLLS------ 123 (520)
T ss_dssp HHHHHHHHHHHHHHH--------------HHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHS------
T ss_pred HHHHHHHHHHHHHHH--------------HHHHHHHHHHHhCccccChHHHHHHHHHHHHHHHHHHHHHHHHHc------
Confidence 445555566666776 999999999999999999999999999999999999998887644
Q ss_pred eeccccCcccC-ccchhhhHHHHHHHHHHHHHHHHHHHHHHhheeccccccc-cccchhhhhhHHHHHHHHHHhhhhhhe
Q psy11830 198 YFNYAYDWQKG-YGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANK-LTIHRTTYFILVGYVYASIMGALPMFG 275 (387)
Q Consensus 198 ~~~~~~~w~~g-~~C~~~~~~~~~~~~~Si~~L~~isidRy~aI~~P~~~~~-~t~~~~~~~i~~iWi~s~~~~~~p~~~ 275 (387)
....|.++ ..|++..++..++..+|++++++||+|||+||+ |++|+. .+++++..+++++|+++++++++|+++
T Consensus 124 ---~~~~~~~~~~~c~~~~~~~~~~~~~S~~~l~~isidRy~aI~-p~~~~~~~t~~~~~~~i~~~W~~s~~~~~~~~~~ 199 (520)
T 3v2y_A 124 ---GATTYKLTPAQWFLREGSMFVALSASVFSLLAIAIERYITML-KMKLHNGSNNFRLFLLISACWVISLILGGLPIMG 199 (520)
T ss_dssp ---GGGGTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-C-------CCHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred ---cccceeeCccccchHHHHHHHHHHHHHHHHHHHHHHHhhEEe-ccccccccchhHHHHHHHHHHHHHHHHHHHHHHe
Confidence 12368888 899999999999999999999999999999999 999999 999999999999999999999999999
Q ss_pred ecccCCceeeeccCcCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy11830 276 ISSYSTTSICLPMDTRHLGSKIYVHTLLLFSSLVFAMICVCYFQIYSSLGNVL 328 (387)
Q Consensus 276 ~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~iPl~ii~~~Y~~I~~~lr~~~ 328 (387)
++.+.+...|...++ .....|.+..++.+++|+++|++||.+|++.+|+++
T Consensus 200 ~~~~~~~~~C~~~~~--~~~~~~~~~~~~~~~lPl~ii~~~Y~~I~~~l~~~~ 250 (520)
T 3v2y_A 200 WNCISALSSCSTVLP--LYHKHYILFCTTVFTLLLLSIVILYCRIYSLVRTRN 250 (520)
T ss_dssp CBCTTCGGGBCSSST--TBBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eccccCCCcccccCC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 998877788976553 234556666666789999999999999999999876
No 3
>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}
Probab=99.95 E-value=6.4e-28 Score=240.62 Aligned_cols=192 Identities=18% Similarity=0.191 Sum_probs=154.6
Q ss_pred HHHHHHHHHHHHhhccccccchhhchhhhhhhcccceeeeeeeccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy11830 116 ADLCMAFYLLLLAVKDLQSTEVYFNYAYDWQKGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQST 195 (387)
Q Consensus 116 ad~~~~~~~~ii~~~~~~~~~~Y~~~a~~w~~gN~lvi~vi~~~~~l~t~~~~~i~nLavaDll~~~~~~~~~~~~~~~~ 195 (387)
.+.+.++.+.+++++|+ +||+++++++.+++++|+++|+|+.|||++|+++++..++.......
T Consensus 19 ~~~~~~~~~~~i~~~~i--------------~gN~lvi~~~~~~~~l~~~~~~~l~~La~aDll~~~~~~~~~~~~~~-- 82 (484)
T 3vw7_A 19 LTLFVPSVYTGVFVVSL--------------PLNIMAIVVFILKMKVKKPAVVYMLHLATADVLFVSVLPFKISYYFS-- 82 (484)
T ss_dssp HHTHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHTTHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 34556666777777777 99999999999999999999999999999999998876665553322
Q ss_pred ceeeccccCcccC-ccchhhhHHHHHHHHHHHHHHHHHHHHHHhheeccccccc-cccchhhhhhHHHHHHHHHHhhhhh
Q psy11830 196 EVYFNYAYDWQKG-YGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANK-LTIHRTTYFILVGYVYASIMGALPM 273 (387)
Q Consensus 196 ~~~~~~~~~w~~g-~~C~~~~~~~~~~~~~Si~~L~~isidRy~aI~~P~~~~~-~t~~~~~~~i~~iWi~s~~~~~~p~ 273 (387)
...|.+| ..|++..++..++..+|++++++||+|||+||++|++|++ .+++++..+++++|++++++++|++
T Consensus 83 ------~~~~~~~~~~C~~~~~~~~~~~~~S~~~l~~is~dRy~aI~~P~~~~~~~t~~~~~~~i~~~W~~s~~~~~p~~ 156 (484)
T 3vw7_A 83 ------GSDWQFGSELCRFVTAAFYCNMYASILLMTVISIDRFLAVVYPMQSLSWRTLGRASFTCLAIWALAIAGVVPLL 156 (484)
T ss_dssp ------TSCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------cCCcccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHheEEEcccccccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 3379999 9999999999999999999999999999999999999998 9999999999999999999998888
Q ss_pred heeccc----CCceeeeccCcCcccchh---hhH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy11830 274 FGISSY----STTSICLPMDTRHLGSKI---YVH-TLLLFSSLVFAMICVCYFQIYSSLGNVLT 329 (387)
Q Consensus 274 ~~~~~~----~~~~~C~~~~~~~~~~~~---~~~-~~~~~~~iPl~ii~~~Y~~I~~~lr~~~~ 329 (387)
+.+..+ .....|...+........ |.. ..++.+++|+++++++|++|++.++++.+
T Consensus 157 ~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~ii~~~Y~~I~~~l~~~~~ 220 (484)
T 3vw7_A 157 LKEQTIQVPGLGITTCHDVLSETLLEGYYAYYFSAFSAVFFFVPLIISTVCYVSIIRCLSSSAN 220 (484)
T ss_dssp TSCCEEEETTTTEEEESSSCSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred HhhhccccCCCCCceeeccCCccchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhH
Confidence 766542 234679766554433322 332 33556799999999999999999998775
No 4
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Probab=99.94 E-value=1.8e-27 Score=236.21 Aligned_cols=188 Identities=16% Similarity=0.197 Sum_probs=156.9
Q ss_pred HHHHHHHHHHhhccccccchhhchhhhhhhcccceeeeeeeccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccce
Q psy11830 118 LCMAFYLLLLAVKDLQSTEVYFNYAYDWQKGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEV 197 (387)
Q Consensus 118 ~~~~~~~~ii~~~~~~~~~~Y~~~a~~w~~gN~lvi~vi~~~~~l~t~~~~~i~nLavaDll~~~~~~~~~~~~~~~~~~ 197 (387)
.+..+.+.++++.|+ +||+++++++.+++++|+++|+++.|||++|++++++.+|..+.....
T Consensus 24 ~~~~~~~~~~~~~g~--------------~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~~~~~~--- 86 (467)
T 3uon_A 24 VFIVLVAGSLSLVTI--------------IGNILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVFSMNLYTLYTVI--- 86 (467)
T ss_dssp HHHHHHHHHHHHHHH--------------HHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHTHHHHHHHHHHS---
T ss_pred HHHHHHHHHHHHHHH--------------HHHHHheeeeeecCccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence 456666677777787 999999999999999999999999999999999999998887765443
Q ss_pred eeccccCcccC-ccchhhhHHHHHHHHHHHHHHHHHHHHHHhheeccccccc-cccchhhhhhHHHHHHHHHHhhhhhhe
Q psy11830 198 YFNYAYDWQKG-YGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANK-LTIHRTTYFILVGYVYASIMGALPMFG 275 (387)
Q Consensus 198 ~~~~~~~w~~g-~~C~~~~~~~~~~~~~Si~~L~~isidRy~aI~~P~~~~~-~t~~~~~~~i~~iWi~s~~~~~~p~~~ 275 (387)
+.|.+| ..|++..++..++..+|++++++||+|||+||++|++|++ .+++++..+++++|++++++++|++++
T Consensus 87 -----~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~P~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~ 161 (467)
T 3uon_A 87 -----GYWPLGPVVCDLWLALDYVVSNASVMNLLIISFDRYFCVTKPLTYPVKRTTKMAGMMIAAAWVLSFILWAPAILF 161 (467)
T ss_dssp -----SSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSGGGCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----CCccCCcchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 369999 8999999999999999999999999999999999999999 999999999999999999999888776
Q ss_pred eccc-----CCceeeeccCcCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy11830 276 ISSY-----STTSICLPMDTRHLGSKIYVHTLLLFSSLVFAMICVCYFQIYSSLGNVLT 329 (387)
Q Consensus 276 ~~~~-----~~~~~C~~~~~~~~~~~~~~~~~~~~~~iPl~ii~~~Y~~I~~~lr~~~~ 329 (387)
+..+ .....|...+... ..+.....++.+++|+++++++|.+|++.+|++.+
T Consensus 162 ~~~~~~~~~~~~~~C~~~~~~~--~~~~~~~~~~~~~~p~~ii~~~y~~I~~~l~~~~~ 218 (467)
T 3uon_A 162 WQFIVGVRTVEDGECYIQFFSN--AAVTFGTAIAAFYLPVIIMTVLYWHISRASKSRIN 218 (467)
T ss_dssp HHHHHSCCCCCSSCCCCGGGGS--HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred hhhcccccCCCCCcceeecCcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5432 2344576443322 22233344556699999999999999999998765
No 5
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A*
Probab=99.94 E-value=1.3e-27 Score=240.50 Aligned_cols=191 Identities=18% Similarity=0.325 Sum_probs=154.1
Q ss_pred HHHHHHHHHHhhccccccchhhchhhhhhhcccceeeeeeeccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccce
Q psy11830 118 LCMAFYLLLLAVKDLQSTEVYFNYAYDWQKGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEV 197 (387)
Q Consensus 118 ~~~~~~~~ii~~~~~~~~~~Y~~~a~~w~~gN~lvi~vi~~~~~l~t~~~~~i~nLavaDll~~~~~~~~~~~~~~~~~~ 197 (387)
...++.+.+++++|+ +||+++++++.+++++|+++|+|+.|||++|++++++.+|..+.....
T Consensus 41 ~~~~~~~~~i~~~gi--------------~gN~lvi~~i~~~~~l~~~~~~~l~nLAiaDll~~~~~~p~~~~~~~~--- 103 (500)
T 2rh1_A 41 VGMGIVMSLIVLAIV--------------FGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILM--- 103 (500)
T ss_dssp HHHHHHHHHHHHHHH--------------HHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHH--------------HHHHHHHHHHhhcCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence 345556666677776 999999999999999999999999999999999999988887755442
Q ss_pred eeccccCcccC-ccchhhhHHHHHHHHHHHHHHHHHHHHHHhheeccccccc-cccchhhhhhHHHHHHHHHHhhhhhh-
Q psy11830 198 YFNYAYDWQKG-YGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANK-LTIHRTTYFILVGYVYASIMGALPMF- 274 (387)
Q Consensus 198 ~~~~~~~w~~g-~~C~~~~~~~~~~~~~Si~~L~~isidRy~aI~~P~~~~~-~t~~~~~~~i~~iWi~s~~~~~~p~~- 274 (387)
+.|.+| ..|++..++..++..+|++++++||+|||+||++|++|++ .+++++..+++++|+++++++++|.+
T Consensus 104 -----~~w~~~~~~C~~~~~~~~~~~~~Si~~l~~isidRy~aI~~Pl~~~~~~t~~~~~~~i~~~W~~s~~~~~~p~~~ 178 (500)
T 2rh1_A 104 -----KMWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQM 178 (500)
T ss_dssp -----TSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSCSSCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -----CCCcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHeeccCcCCeeecccceeehhhHHHHHHHHHHhcchhe
Confidence 369999 8999999999999999999999999999999999999998 99999999999999999999876764
Q ss_pred eecccCC--ceeeeccCc--CcccchhhhHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q psy11830 275 GISSYST--TSICLPMDT--RHLGSKIYVHT-LLLFSSLVFAMICVCYFQIYSSLGNVLTA 330 (387)
Q Consensus 275 ~~~~~~~--~~~C~~~~~--~~~~~~~~~~~-~~~~~~iPl~ii~~~Y~~I~~~lr~~~~~ 330 (387)
++..... ...|...+. +......|.+. .++.+++|+++++++|.+|++.+|++.++
T Consensus 179 ~~~~~~~~~~~~c~~~~~~~~~~~~~~y~~~~~~~~~~iPl~ii~~~Y~~I~~~l~~~~~~ 239 (500)
T 2rh1_A 179 HWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLNI 239 (500)
T ss_dssp TTTCCCSHHHHHHHHCTTCCCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHCSH
T ss_pred eeecccccCcceecccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433222 234543221 22223444444 34556999999999999999999987665
No 6
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ...
Probab=99.94 E-value=1.1e-27 Score=228.57 Aligned_cols=192 Identities=19% Similarity=0.296 Sum_probs=157.7
Q ss_pred HHHHHHHHHHHhhccccccchhhchhhhhhhcccceeeeeeeccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy11830 117 DLCMAFYLLLLAVKDLQSTEVYFNYAYDWQKGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTE 196 (387)
Q Consensus 117 d~~~~~~~~ii~~~~~~~~~~Y~~~a~~w~~gN~lvi~vi~~~~~l~t~~~~~i~nLavaDll~~~~~~~~~~~~~~~~~ 196 (387)
..+.+++..++++.|+ +||+++++++.+++++|+++|+++.|||++|++.++..+|........
T Consensus 38 ~~~~~~~~~~i~~~gi--------------~gN~lvi~~i~~~~~~~~~~~~ll~~Lai~Dll~~~~~~~~~~~~~~~-- 101 (349)
T 1u19_A 38 FSMLAAYMFLLIMLGF--------------PINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLH-- 101 (349)
T ss_dssp HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHH--------------HhHHheEeehhhhhhhcCchhHHHHHHHHHHHHHHHhcchHHHHHHhc--
Confidence 3456677777888887 999999999999999999999999999999999999988877654432
Q ss_pred eeeccccCcccC-ccchhhhHHHHHHHHHHHHHHHHHHHHHHhheeccccccccccchhhhhhHHHHHHHHHHhhhhhhe
Q psy11830 197 VYFNYAYDWQKG-YGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANKLTIHRTTYFILVGYVYASIMGALPMFG 275 (387)
Q Consensus 197 ~~~~~~~~w~~g-~~C~~~~~~~~~~~~~Si~~L~~isidRy~aI~~P~~~~~~t~~~~~~~i~~iWi~s~~~~~~p~~~ 275 (387)
+.|.+| ..|++..++...+..+|++++++||+|||+||++|+++++.+++++...++++|+.+++.+++|.++
T Consensus 102 ------~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~aI~~P~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~ 175 (349)
T 1u19_A 102 ------GYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVG 175 (349)
T ss_dssp ------TSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHHHSGGGTT
T ss_pred ------CeeeCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHheeeCCccceeeccchhHHHHHHHHHHHHHHHHHHHHh
Confidence 358888 8999999999999999999999999999999999999876788999999999999999999888887
Q ss_pred eccc---CCceeeeccCcCc---ccchhhhHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q psy11830 276 ISSY---STTSICLPMDTRH---LGSKIYVHTL-LLFSSLVFAMICVCYFQIYSSLGNVLTA 330 (387)
Q Consensus 276 ~~~~---~~~~~C~~~~~~~---~~~~~~~~~~-~~~~~iPl~ii~~~Y~~I~~~lr~~~~~ 330 (387)
++.+ +....|...+... .....|.... .+.+++|+++++++|.+|++++|++.++
T Consensus 176 ~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~ 237 (349)
T 1u19_A 176 WSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQ 237 (349)
T ss_dssp SSCCEEETTTTEEECCCSCCCGGGTHHHHHHHHHHHTTHHHHHHHHHHHTTTTTSSCSCCCS
T ss_pred eeeeeccCCceeecccccCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 6543 2344686554322 2233444433 4456899999999999999999887653
No 7
>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens}
Probab=99.94 E-value=4.7e-27 Score=220.00 Aligned_cols=173 Identities=19% Similarity=0.230 Sum_probs=134.1
Q ss_pred hcccceeeeeeeccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccceeeccccCcccC-ccchhhhHHHHHHHHHH
Q psy11830 147 KGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQKG-YGCKVAGFVTVFASQLS 225 (387)
Q Consensus 147 ~gN~lvi~vi~~~~~l~t~~~~~i~nLavaDll~~~~~~~~~~~~~~~~~~~~~~~~~w~~g-~~C~~~~~~~~~~~~~S 225 (387)
+||++|+.++.++|++|+++|+++.|||+||+++++..++..... ..+|.+| ..|+...++...+..+|
T Consensus 27 ~gN~lvi~vi~~~~~lrt~~n~~i~nLAvaDll~~l~~p~~~~~~----------~~~~~~~~~~c~~~~~~~~~~~~~s 96 (296)
T 2lnl_A 27 LGNSLVMLVILYSRVGRSVTDVYLLNLALADLLFALTLPIWAASK----------VNGWIFGTFLCKVVSLLKEVNFYSG 96 (296)
T ss_dssp HHHHHHHHHHHHCTTCCSTTHHHHHHHHHHHHHHHHHHHHHHHHH----------HSSSCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHhhhHHHhhc----------cCCCccchhHHHHHhhhhhhhHHHH
Confidence 999999999999999999999999999999999988765544321 1259999 89999999999999999
Q ss_pred HHHHHHHHHHHHhheeccccccccccchhhhhhHHHHHHHHHHhhhhhheecccCC---ceeeeccC--cCcccchhhhH
Q psy11830 226 IFTLGMITLERWYSIKRALYANKLTIHRTTYFILVGYVYASIMGALPMFGISSYST---TSICLPMD--TRHLGSKIYVH 300 (387)
Q Consensus 226 i~~L~~isidRy~aI~~P~~~~~~t~~~~~~~i~~iWi~s~~~~~~p~~~~~~~~~---~~~C~~~~--~~~~~~~~~~~ 300 (387)
++++++||+|||.||++|++++..+++++..+++.+|+.+++.+.|+...+..+.. ...|.... ........+..
T Consensus 97 ~~~l~~isidRy~aI~~P~~~~~~~~~~~~~~~~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (296)
T 2lnl_A 97 ILLLACISVDRYLAIVHATRTLTQKRHLVKFVCLGCWGLSMNLSLPFFLFRQAYHPNNSSPVCYEVLGNDTAKWRMVLRI 176 (296)
T ss_dssp HHHHHHHHHHHHHHSSSCSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCCCCTTSCCCCSCCSCCTTTTTTHHHH
T ss_pred HHHHHHHHhhhhhhhhhccccchhhhhhhHheehHHHHHHHHHhcchhhcceeecCCCCCceeeeeccccchhhHHHHHH
Confidence 99999999999999999999988445677778889999999999777776554432 22222221 12222223333
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy11830 301 -TLLLFSSLVFAMICVCYFQIYSSLGNVLT 329 (387)
Q Consensus 301 -~~~~~~~iPl~ii~~~Y~~I~~~lr~~~~ 329 (387)
.....+++|+.++..+|.++.++++++.+
T Consensus 177 ~~~~~~~~~p~~i~~~~y~~i~~~~~~~~~ 206 (296)
T 2lnl_A 177 LPHTFGFIVPLFVMLFCYGFTLRTLFKAHM 206 (296)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHTTTSSSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34556689999999999998776665443
No 8
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Probab=99.94 E-value=2.3e-27 Score=237.65 Aligned_cols=191 Identities=18% Similarity=0.226 Sum_probs=157.9
Q ss_pred HHHHHHHHHHHHhhccccccchhhchhhhhhhcccceeeeeeeccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy11830 116 ADLCMAFYLLLLAVKDLQSTEVYFNYAYDWQKGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQST 195 (387)
Q Consensus 116 ad~~~~~~~~ii~~~~~~~~~~Y~~~a~~w~~gN~lvi~vi~~~~~l~t~~~~~i~nLavaDll~~~~~~~~~~~~~~~~ 195 (387)
...+..+...+++++|+ +||++|++++.+++++|+++|+|+.|||++|+++++ ..|..+....
T Consensus 47 ~~~~~~~~~~~i~~~g~--------------~gN~lvi~~~~~~~~l~~~~~~~l~~La~~Dll~~~-~~p~~~~~~~-- 109 (502)
T 3odu_A 47 NKIFLPTIYSIIFLTGI--------------VGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVI-TLPFWAVDAV-- 109 (502)
T ss_dssp HHHHHHHHHHHHHHHHH--------------HHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHHHT-THHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHh--
Confidence 35666677777777887 999999999999999999999999999999999964 5555554332
Q ss_pred ceeeccccCcccC-ccchhhhHHHHHHHHHHHHHHHHHHHHHHhheeccccccc-cccchhhhhhHHHHHHHHHHhhhhh
Q psy11830 196 EVYFNYAYDWQKG-YGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANK-LTIHRTTYFILVGYVYASIMGALPM 273 (387)
Q Consensus 196 ~~~~~~~~~w~~g-~~C~~~~~~~~~~~~~Si~~L~~isidRy~aI~~P~~~~~-~t~~~~~~~i~~iWi~s~~~~~~p~ 273 (387)
.+|.+| ..|++..++..++..+|++++++||+|||+||++|++|++ .+++++..+++++|+++++++++++
T Consensus 110 -------~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~ai~~P~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~ 182 (502)
T 3odu_A 110 -------ANWYFGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDF 182 (502)
T ss_dssp -------TCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHTHHHHHTHHHHHHTTHHHH
T ss_pred -------cCCcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhheecccccccccchhHHHHhhhHHHHHHHHHHHHHH
Confidence 159999 8899999999999999999999999999999999999999 9999999999999999999997777
Q ss_pred heec--ccCCceeeeccCcCcccchhhhHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q psy11830 274 FGIS--SYSTTSICLPMDTRHLGSKIYVHTL-LLFSSLVFAMICVCYFQIYSSLGNVLTA 330 (387)
Q Consensus 274 ~~~~--~~~~~~~C~~~~~~~~~~~~~~~~~-~~~~~iPl~ii~~~Y~~I~~~lr~~~~~ 330 (387)
+... ...+...|...++.......|.+.. ++.+++|+++++++|.+|++.++++.++
T Consensus 183 ~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~p~~ii~~~y~~I~~~l~~~~~~ 242 (502)
T 3odu_A 183 IFANVSEADDRYICDRFYPNDLWVVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSGSN 242 (502)
T ss_dssp HHEEEEECSSSEEEEECCSSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHGGGCSCC
T ss_pred HheeeeccCCceEEeecCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 6443 2345667986665554444454443 4556899999999999999999987654
No 9
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*
Probab=99.93 E-value=1.7e-27 Score=235.86 Aligned_cols=190 Identities=19% Similarity=0.229 Sum_probs=154.2
Q ss_pred HHHHHHHHHHHhhccccccchhhchhhhhhhcccceeeeeeeccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy11830 117 DLCMAFYLLLLAVKDLQSTEVYFNYAYDWQKGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTE 196 (387)
Q Consensus 117 d~~~~~~~~ii~~~~~~~~~~Y~~~a~~w~~gN~lvi~vi~~~~~l~t~~~~~i~nLavaDll~~~~~~~~~~~~~~~~~ 196 (387)
+.+..+.+.++++.|+ +||+++++++.+++++|+++|+++.|||++|+++++. .|..+.....
T Consensus 17 ~~~~~~~~~~~~~~gi--------------~gN~lvi~~~~~~~~~~~~~~~~l~~La~~Dll~~~~-~p~~~~~~~~-- 79 (464)
T 4dkl_A 17 AITIMALYSIVCVVGL--------------FGNFLVMYVIVRYTKMKTATNIYIFNLALADALATST-LPFQSVNYLM-- 79 (464)
T ss_dssp HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHH--------------HHHHHeehhhhhccccCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHh--
Confidence 4556666777777777 9999999999999999999999999999999999987 6655544332
Q ss_pred eeeccccCcccC-ccchhhhHHHHHHHHHHHHHHHHHHHHHHhheeccccccc-cccchhhhhhHHHHHHHHHHhhhhhh
Q psy11830 197 VYFNYAYDWQKG-YGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANK-LTIHRTTYFILVGYVYASIMGALPMF 274 (387)
Q Consensus 197 ~~~~~~~~w~~g-~~C~~~~~~~~~~~~~Si~~L~~isidRy~aI~~P~~~~~-~t~~~~~~~i~~iWi~s~~~~~~p~~ 274 (387)
+.|.+| ..|++..++..++..+|++++++||+|||+||++|++|++ .+++++..+++++|++++++++|+++
T Consensus 80 ------~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~aI~~P~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~~ 153 (464)
T 4dkl_A 80 ------GTWPFGNILCKIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPVKALDFRTPRNAKIVNVCNWILSSAIGLPVMF 153 (464)
T ss_dssp ------SSCCSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------CCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccHhHHhHHHHHHHHHHHHHHHHH
Confidence 369999 8999999999999999999999999999999999999998 99999999999999999999977666
Q ss_pred eec--ccCCceeeeccCcCccc--chhhhHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy11830 275 GIS--SYSTTSICLPMDTRHLG--SKIYVHT-LLLFSSLVFAMICVCYFQIYSSLGNVLT 329 (387)
Q Consensus 275 ~~~--~~~~~~~C~~~~~~~~~--~~~~~~~-~~~~~~iPl~ii~~~Y~~I~~~lr~~~~ 329 (387)
... ...+...|...+..... ...|... .++.+++|+++++++|.+|++.+|++++
T Consensus 154 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ii~~~y~~i~~~l~~~~~ 213 (464)
T 4dkl_A 154 MATTKYRQGSIDCTLTFSHPTWYWENLLKICVFIFAFIMPVLIITVCYGLMILRLKSVRN 213 (464)
T ss_dssp SBCCEEETTEEECCBCCSSSHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHCCCCCS
T ss_pred heeecccCCCceEEeecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 332 23345668655443322 2233333 3445689999999999999999987665
No 10
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Probab=99.93 E-value=3.9e-27 Score=234.84 Aligned_cols=190 Identities=20% Similarity=0.274 Sum_probs=155.0
Q ss_pred HHHHHHHHHHHhhccccccchhhchhhhhhhcccceeeeeeeccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy11830 117 DLCMAFYLLLLAVKDLQSTEVYFNYAYDWQKGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTE 196 (387)
Q Consensus 117 d~~~~~~~~ii~~~~~~~~~~Y~~~a~~w~~gN~lvi~vi~~~~~l~t~~~~~i~nLavaDll~~~~~~~~~~~~~~~~~ 196 (387)
+.+..+...++++.|+ +||+++++++.+++++|+++|+|+.|||++|++++++.+|..+....
T Consensus 21 ~~~~~~~~~~i~~~gi--------------~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~~~~~--- 83 (488)
T 3eml_A 21 SSVYITVELAIAVLAI--------------LGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITIST--- 83 (488)
T ss_dssp THHHHHHHHHHHHHHH--------------HHHHHHHHHHHHCGGGCSSHHHHHHHHHHHHHHHHHTHHHHHHHHTT---
T ss_pred hhHHHHHHHHHHHHHH--------------HHHHHhhhheeeccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence 3445566666777777 99999999999999999999999999999999999998887764321
Q ss_pred eeeccccCcccC-ccchhhhHHHHHHHHHHHHHHHHHHHHHHhheeccccccc-cccchhhhhhHHHHHHHHHHhhhhhh
Q psy11830 197 VYFNYAYDWQKG-YGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANK-LTIHRTTYFILVGYVYASIMGALPMF 274 (387)
Q Consensus 197 ~~~~~~~~w~~g-~~C~~~~~~~~~~~~~Si~~L~~isidRy~aI~~P~~~~~-~t~~~~~~~i~~iWi~s~~~~~~p~~ 274 (387)
.|..| ..|++..++..++..+|++++++||+|||++|++|++|++ .+++++..+++++|+++++++++|++
T Consensus 84 -------~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~aI~~P~~~~~~~~~~~~~~~i~~~W~~s~~~~~~~~~ 156 (488)
T 3eml_A 84 -------GFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPML 156 (488)
T ss_dssp -------CCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGSTTTSCHHHHHHHHHHHHHHHHHHHTTGGG
T ss_pred -------cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhheeEecccccccccCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 58788 8999999999999999999999999999999999999998 99999999999999999999999998
Q ss_pred eecccCC-------ceeeeccCc-----CcccchhhhH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q psy11830 275 GISSYST-------TSICLPMDT-----RHLGSKIYVH-TLLLFSSLVFAMICVCYFQIYSSLGNVLTA 330 (387)
Q Consensus 275 ~~~~~~~-------~~~C~~~~~-----~~~~~~~~~~-~~~~~~~iPl~ii~~~Y~~I~~~lr~~~~~ 330 (387)
++..+.. ...|...+. .......+.. ..++.+++|+++++++|.+|++.++++.++
T Consensus 157 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~ii~~~y~~I~~~l~~~~~~ 225 (488)
T 3eml_A 157 GWNNCGQPKEGKNHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLNI 225 (488)
T ss_dssp TCCSSCC-------CCSSCTTCEECCHHHHSCHHHHHTTTHHHHTHHHHHHHHHHHHHHHHHHTCCCCH
T ss_pred ccccccccccccccccccccccceeeccccccchhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 7765442 133543221 1112222332 345566899999999999999999987654
No 11
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens}
Probab=99.93 E-value=2.1e-27 Score=236.76 Aligned_cols=185 Identities=19% Similarity=0.273 Sum_probs=156.1
Q ss_pred HHHHHHHHhhccccccchhhchhhhhhhcccceeeeeeeccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccceee
Q psy11830 120 MAFYLLLLAVKDLQSTEVYFNYAYDWQKGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYF 199 (387)
Q Consensus 120 ~~~~~~ii~~~~~~~~~~Y~~~a~~w~~gN~lvi~vi~~~~~l~t~~~~~i~nLavaDll~~~~~~~~~~~~~~~~~~~~ 199 (387)
.++.+.+++++|+ +||+++++++.+++++|+++|+|+.|||++|++++++.+|..+.....
T Consensus 41 ~~~~~~~~~~~g~--------------~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~~~~~~----- 101 (481)
T 3pbl_A 41 YALSYCALILAIV--------------FGNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMPWVVYLEVT----- 101 (481)
T ss_dssp CCSHHHHHHHHHH--------------HHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHH--------------HHHHHHhHHhhhccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----
Confidence 4445556666776 999999999999999999999999999999999999988887755443
Q ss_pred ccccCcccC-ccchhhhHHHHHHHHHHHHHHHHHHHHHHhheeccccc---cc-cccchhhhhhHHHHHHHHHHhhhhhh
Q psy11830 200 NYAYDWQKG-YGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYA---NK-LTIHRTTYFILVGYVYASIMGALPMF 274 (387)
Q Consensus 200 ~~~~~w~~g-~~C~~~~~~~~~~~~~Si~~L~~isidRy~aI~~P~~~---~~-~t~~~~~~~i~~iWi~s~~~~~~p~~ 274 (387)
...|.+| ..|++..++..++..+|++++++||+|||+||++|++| .+ .+++++..+++++|++++++++++++
T Consensus 102 --~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~aI~~P~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~ 179 (481)
T 3pbl_A 102 --GGVWNFSRICCDVFVTLDVMMCTASIWNLCAISIDRYTAVVMPVHYQHGTGQSSCRRVALMITAVWVLAFAVSCPLLF 179 (481)
T ss_dssp --TSCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred --cCccccCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2369999 89999999999999999999999999999999999998 55 88899999999999999999988888
Q ss_pred eecccCCceeeeccCcCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q psy11830 275 GISSYSTTSICLPMDTRHLGSKIYVHTLLLFSSLVFAMICVCYFQIYSSLGNVLTA 330 (387)
Q Consensus 275 ~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~iPl~ii~~~Y~~I~~~lr~~~~~ 330 (387)
+++...+...|...+ ..+.....++.+++|+++++++|++|++.+++++++
T Consensus 180 ~~~~~~~~~~C~~~~-----~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~ 230 (481)
T 3pbl_A 180 GFNTTGDPTVCSISN-----PDFVIYSSVVSFYLPFGVTVLVYARIYVVLKQRRRK 230 (481)
T ss_dssp TTCCCSSTTCCSCCC-----HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred eecccCCCCcccccC-----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 877766666786432 123333445667999999999999999999987664
No 12
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Probab=99.93 E-value=1.7e-27 Score=235.42 Aligned_cols=186 Identities=20% Similarity=0.226 Sum_probs=152.1
Q ss_pred HHHHHHHHhhccccccchhhchhhhhhhcccceeeeeeeccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccceee
Q psy11830 120 MAFYLLLLAVKDLQSTEVYFNYAYDWQKGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYF 199 (387)
Q Consensus 120 ~~~~~~ii~~~~~~~~~~Y~~~a~~w~~gN~lvi~vi~~~~~l~t~~~~~i~nLavaDll~~~~~~~~~~~~~~~~~~~~ 199 (387)
.++.+.++++.|+ +||+++++++.+++++|+++|+++.|||++|+++++...|..+.....
T Consensus 11 ~~~~~~~~~~~gi--------------~gN~~vi~~~~~~~~~~~~~~~~l~~La~~Dll~~~~~~p~~~~~~~~----- 71 (452)
T 3rze_A 11 LVVVLSTICLVTV--------------GLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMNILYLLM----- 71 (452)
T ss_dssp GGTHHHHHHHHHH--------------HHHHHHHHHHHHCSTTCCGGGHHHHHHHHHHHHHHHTHHHHHHHHHHS-----
T ss_pred HHHHHHHHHHHHH--------------HHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----
Confidence 4455666667776 999999999999999999999999999999999999998888765543
Q ss_pred ccccCcccC-ccchhhhHHHHHHHHHHHHHHHHHHHHHHhheeccccccc-cccchhhhhhHHHHHHHHHHhhhhhheec
Q psy11830 200 NYAYDWQKG-YGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANK-LTIHRTTYFILVGYVYASIMGALPMFGIS 277 (387)
Q Consensus 200 ~~~~~w~~g-~~C~~~~~~~~~~~~~Si~~L~~isidRy~aI~~P~~~~~-~t~~~~~~~i~~iWi~s~~~~~~p~~~~~ 277 (387)
+.|.+| ..|++..++..++..+|++++++||+|||+||++|++|++ .+++++..+++++|+++++++ .|.+++.
T Consensus 72 ---~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~is~dRy~aI~~P~~~~~~~~~~~~~~~i~~~W~~~~~~~-~p~~~~~ 147 (452)
T 3rze_A 72 ---SKWSLGRPLCLFWLSMDYVASTASIFSVFILCIDRYRSVQQPLRYLKYRTKTRASATILGAWFLSFLWV-IPILGWN 147 (452)
T ss_dssp ---SSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCTTTTSSHHHHHHHHHHHHHHHGGGH-HHHHCCC
T ss_pred ---CCccCCchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHheeCccccccccchhHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 379999 8999999999999999999999999999999999999999 999999999999999999887 6676665
Q ss_pred ccC------CceeeeccCcCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q psy11830 278 SYS------TTSICLPMDTRHLGSKIYVHTLLLFSSLVFAMICVCYFQIYSSLGNVLTA 330 (387)
Q Consensus 278 ~~~------~~~~C~~~~~~~~~~~~~~~~~~~~~~iPl~ii~~~Y~~I~~~lr~~~~~ 330 (387)
.+. ....|...+.. ...+.....++.+++|+++++++|.+|++.+|++.++
T Consensus 148 ~~~~~~~~~~~~~C~~~~~~--~~~~~~~~~~~~~~~p~~ii~~~y~~I~~~l~~~~~~ 204 (452)
T 3rze_A 148 HFMQQTSVRREDKCETDFYD--VTWFKVMTAIINFYLPTLLMLWFYAKIYKAVRQHCNI 204 (452)
T ss_dssp C-------CCSSSSCCSCTT--CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSCCCCCH
T ss_pred hcccccccCCCCeecCCCcc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 543 23356533322 1222233345566999999999999999999887554
No 13
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A
Probab=99.93 E-value=2.4e-26 Score=221.05 Aligned_cols=188 Identities=21% Similarity=0.298 Sum_probs=150.0
Q ss_pred HHHHHHHHHHhhccccccchhhchhhhhhhcccceeeeeeeccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccce
Q psy11830 118 LCMAFYLLLLAVKDLQSTEVYFNYAYDWQKGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEV 197 (387)
Q Consensus 118 ~~~~~~~~ii~~~~~~~~~~Y~~~a~~w~~gN~lvi~vi~~~~~l~t~~~~~i~nLavaDll~~~~~~~~~~~~~~~~~~ 197 (387)
.+.++...++++.|+ +||+++++++.+++++|+++|+++.|||++|+++++...|..+....
T Consensus 33 ~~~~~~~~~i~~~gi--------------~gN~lvi~vi~~~~~l~~~~~~~l~~LaiaDll~~~~~~p~~~~~~~---- 94 (364)
T 2ks9_A 33 VLWAAAYTVIVVTSV--------------VGNVVVMWIILAHKRMRTVTNYFLVNLAFAEASMAAFNTVVNFTYAV---- 94 (364)
T ss_dssp HHHHHHHHHHHHHHH--------------HHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHH--------------HHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 444555666777777 99999999999999999999999999999999999888887664433
Q ss_pred eeccccCcccC-ccchhhhHHHHHHHHHHHHHHHHHHHHHHhheeccccccccccchhhhhhHHHHHHHHHHhhhhhhee
Q psy11830 198 YFNYAYDWQKG-YGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANKLTIHRTTYFILVGYVYASIMGALPMFGI 276 (387)
Q Consensus 198 ~~~~~~~w~~g-~~C~~~~~~~~~~~~~Si~~L~~isidRy~aI~~P~~~~~~t~~~~~~~i~~iWi~s~~~~~~p~~~~ 276 (387)
.+.|.+| ..|++.+++...+..+|++++++||+|||+||++|++++ .+++++...++++|+.+++.++|+. .+
T Consensus 95 ----~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~isidRy~aI~~P~~~~-~~~~~~~~~i~~~W~~s~~~~~p~~-~~ 168 (364)
T 2ks9_A 95 ----HNEWYYGLFYCKFHNFFPIAAVFASIYSMTAVAFDRYMAIIHPLQPR-LSATATKVVICVIWVLALLLAFPQG-YY 168 (364)
T ss_dssp ----HTSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTS-CCHHHHHHHHHHHHHHHHHHHTTTT-TT
T ss_pred ----cCCccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc-cccchHHHHHHHHHHHHHHHHhHHH-HH
Confidence 2369999 899999999999999999999999999999999999987 6888889999999999999985544 33
Q ss_pred ccc---CCceeeeccCcCcc---cchhhhHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy11830 277 SSY---STTSICLPMDTRHL---GSKIYVHT-LLLFSSLVFAMICVCYFQIYSSLGNVLT 329 (387)
Q Consensus 277 ~~~---~~~~~C~~~~~~~~---~~~~~~~~-~~~~~~iPl~ii~~~Y~~I~~~lr~~~~ 329 (387)
... .+...|...++... ....|... .++.+++|+++++++|.+|.+.++++++
T Consensus 169 ~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~ii~~~y~~i~~~l~~~~~ 228 (364)
T 2ks9_A 169 STTETMPSRVVCMIEWPEHPNKIYEKVYHICVTVLIYFLPLLVIGYAYTVVGITLWASEI 228 (364)
T ss_dssp SCCCBCTTCSSBCCCCSCCCTTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSCSCCC
T ss_pred hhheecCCCCEEeecCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 332 23456875544332 22334443 3455689999999999999999987654
No 14
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A*
Probab=99.93 E-value=3.5e-27 Score=221.35 Aligned_cols=191 Identities=17% Similarity=0.270 Sum_probs=152.0
Q ss_pred HHHHHHHHHHhhccccccchhhchhhhhhhcccceeeeeeeccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccce
Q psy11830 118 LCMAFYLLLLAVKDLQSTEVYFNYAYDWQKGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEV 197 (387)
Q Consensus 118 ~~~~~~~~ii~~~~~~~~~~Y~~~a~~w~~gN~lvi~vi~~~~~l~t~~~~~i~nLavaDll~~~~~~~~~~~~~~~~~~ 197 (387)
...++...++++.|+ +||++++.++.+++++|+++|+++.|||++|++.++...|..+....
T Consensus 12 ~~~~~~~~~~~~~gi--------------~gN~lvi~~i~~~~~~~~~~~~ll~~LaiaDll~~~~~~p~~~~~~~---- 73 (315)
T 4amj_A 12 AGMSLLMALVVLLIV--------------AGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVV---- 73 (315)
T ss_dssp HHHHHHHHHHHHHHH--------------HHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHH--------------HHHHHHhHHhhhchhhcchHHHHHHHHHHHHHHHHHHhccHHHHHHh----
Confidence 445566667777777 99999999999999999999999999999999998888887765443
Q ss_pred eeccccCcccC-ccchhhhHHHHHHHHHHHHHHHHHHHHHHhheeccccccc-cccchhhhhhHHHHHHHHHHhhhhhhe
Q psy11830 198 YFNYAYDWQKG-YGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANK-LTIHRTTYFILVGYVYASIMGALPMFG 275 (387)
Q Consensus 198 ~~~~~~~w~~g-~~C~~~~~~~~~~~~~Si~~L~~isidRy~aI~~P~~~~~-~t~~~~~~~i~~iWi~s~~~~~~p~~~ 275 (387)
.++|.+| ..|++.+++...+..+|++++++||+|||+||++|+++++ .+++++...++++|+.+++.+.+|.+.
T Consensus 74 ----~~~~~~~~~~C~~~~~~~~~~~~~S~~~l~~isidRy~aI~~P~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~ 149 (315)
T 4amj_A 74 ----RGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIMM 149 (315)
T ss_dssp ----HSSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ----cCCeeccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhhHHHhhhHHHHHHHHHHHHHHHH
Confidence 2369999 8999999999999999999999999999999999999998 999999999999999999999888774
Q ss_pred ecccC---CceeeeccCc--CcccchhhhHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q psy11830 276 ISSYS---TTSICLPMDT--RHLGSKIYVHTL-LLFSSLVFAMICVCYFQIYSSLGNVLTA 330 (387)
Q Consensus 276 ~~~~~---~~~~C~~~~~--~~~~~~~~~~~~-~~~~~iPl~ii~~~Y~~I~~~lr~~~~~ 330 (387)
..... +...|...+. +......|.... .+.+++|+++++++|.+|++.+|++.++
T Consensus 150 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~~~~~~~~ 210 (315)
T 4amj_A 150 HWWRDEDPQALKCYQDPGCCDFVTNRAYAIASSIISFYIPLLIMIFVALRVYREAKEQIRK 210 (315)
T ss_dssp TTTCCCSHHHHHHHHCTTCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHTC---
T ss_pred HhccccCCCccccccccccchhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33222 1234543221 222334444443 3445899999999999999999987664
No 15
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Probab=99.92 E-value=1.7e-26 Score=228.76 Aligned_cols=193 Identities=21% Similarity=0.343 Sum_probs=157.1
Q ss_pred HHHHHHHHHHHhhccccccchhhchhhhhhhcccceeeeeeeccCCCchhHHHHHHHHHHHHHHHHHH-HHHHHHHhhcc
Q psy11830 117 DLCMAFYLLLLAVKDLQSTEVYFNYAYDWQKGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYL-LLLAIKDLQST 195 (387)
Q Consensus 117 d~~~~~~~~ii~~~~~~~~~~Y~~~a~~w~~gN~lvi~vi~~~~~l~t~~~~~i~nLavaDll~~~~~-~~~~~~~~~~~ 195 (387)
....+++..+++++|+ +||+++++++.+++++|++.|++++|||++|++.+++. +|..+....
T Consensus 34 ~~~~~i~~~ii~i~gi--------------~gN~lvi~vi~~~~~~~~~~~~ll~~LaiaDll~~~~~~~p~~~~~~~-- 97 (448)
T 2z73_A 34 YYSLGIFIGICGIIGC--------------GGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCF-- 97 (448)
T ss_dssp HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHCSTTCSTTHHHHHHHHHHHHHHHHHHSTTHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHH--------------hhHHHhhhhhhhccccCCccchHHHHHHHHHHHHHHHHhccHHHHHHh--
Confidence 3556777888888887 99999999999999999999999999999999998874 665554433
Q ss_pred ceeeccccCcccC-ccchhhhHHHHHHHHHHHHHHHHHHHHHHhheeccccccc-cccchhhhhhHHHHHHHHHHhhhhh
Q psy11830 196 EVYFNYAYDWQKG-YGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANK-LTIHRTTYFILVGYVYASIMGALPM 273 (387)
Q Consensus 196 ~~~~~~~~~w~~g-~~C~~~~~~~~~~~~~Si~~L~~isidRy~aI~~P~~~~~-~t~~~~~~~i~~iWi~s~~~~~~p~ 273 (387)
...|.+| ..|++..++..++..+|++++++||+|||++|++|+++++ .+++++..+++++|+++++++++++
T Consensus 98 ------~~~~~~~~~~C~~~~~~~~~~~~~S~~~l~~isidRy~aI~~P~~~~~~~~~~~~~~~i~~~W~~s~~~~~~~~ 171 (448)
T 2z73_A 98 ------LKKWIFGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWAIGPI 171 (448)
T ss_dssp ------TTSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTCCCCCHHHHHHHHHHHHHHHHHHHSGGG
T ss_pred ------cCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceechhHHHHHHHHHHHHHHHHHHHHH
Confidence 2368888 8999999999999999999999999999999999999988 9999999999999999999998888
Q ss_pred heecccC---CceeeeccCcC-cccchhhhHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q psy11830 274 FGISSYS---TTSICLPMDTR-HLGSKIYVHT-LLLFSSLVFAMICVCYFQIYSSLGNVLTAD 331 (387)
Q Consensus 274 ~~~~~~~---~~~~C~~~~~~-~~~~~~~~~~-~~~~~~iPl~ii~~~Y~~I~~~lr~~~~~~ 331 (387)
++++.+. ....|...+.. +.....+... .++.+++|+++++++|.+|++.++|+.++.
T Consensus 172 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~lP~~ii~~~y~~I~~~l~~~~~~~ 234 (448)
T 2z73_A 172 FGWGAYTLEGVLCNCSFDYISRDSTTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKEM 234 (448)
T ss_dssp GTSSCEEECTTSSSEEECCSCCSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred hceeeeeecCCceeEecccccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8765432 23457644332 2223334333 344468999999999999999998877643
No 16
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR network, structural genomics, GPCR membrane 7TM NOP ORL1 cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo sapiens}
Probab=99.92 E-value=4.4e-26 Score=225.20 Aligned_cols=190 Identities=22% Similarity=0.233 Sum_probs=143.6
Q ss_pred HHHHHHHHHHHhhccccccchhhchhhhhhhcccceeeeeeeccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy11830 117 DLCMAFYLLLLAVKDLQSTEVYFNYAYDWQKGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTE 196 (387)
Q Consensus 117 d~~~~~~~~ii~~~~~~~~~~Y~~~a~~w~~gN~lvi~vi~~~~~l~t~~~~~i~nLavaDll~~~~~~~~~~~~~~~~~ 196 (387)
+....+..++++++|+ +||+++++++.+++++|+++|+++.|||++|++++ +..|........
T Consensus 125 ~~~~~~~~~~i~~~gi--------------~gN~lvi~~i~~~~~l~~~~~~ll~~LAvsDll~~-~~~p~~~~~~~~-- 187 (434)
T 4ea3_A 125 KVTIVGLYLAVCVGGL--------------LGNCLVMYVILRHTKMKTATNIYIFNLALADTLVL-LTLPFQGTDILL-- 187 (434)
T ss_dssp HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHH-TTHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHH--------------HHHHHeeeeeeecCccCchhHHHHHHHHHHHHHHH-HHhHHHHHHHHh--
Confidence 3445556666677776 99999999999999999999999999999999984 445555544332
Q ss_pred eeeccccCcccC-ccchhhhHHHHHHHHHHHHHHHHHHHHHHhheeccccccc-cccchhhhhhHHHHHHHHHHhhhhhh
Q psy11830 197 VYFNYAYDWQKG-YGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANK-LTIHRTTYFILVGYVYASIMGALPMF 274 (387)
Q Consensus 197 ~~~~~~~~w~~g-~~C~~~~~~~~~~~~~Si~~L~~isidRy~aI~~P~~~~~-~t~~~~~~~i~~iWi~s~~~~~~p~~ 274 (387)
+.|.+| ..|++..++..++..+|++++++||+|||+||++|++|++ .+++++..+++++|+.++++++|+.+
T Consensus 188 ------~~~~~~~~~C~~~~~~~~~~~~~S~~~l~~isidRy~aI~~Pl~~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~ 261 (434)
T 4ea3_A 188 ------GFWPFGNALCKTVIAIDYYNMFTSTFTLTAMSVDRYVAICHPIRALDVRTSSKAQAVNVAIWALASVVGVPVAI 261 (434)
T ss_dssp ------TSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------cCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhEEEcccccccccchhhhHHhhhhhhhHHHHHHhhHhe
Confidence 258888 8999999999999999999999999999999999999999 99999999999999999999965554
Q ss_pred eec-c-cCCceeeeccCcCcc--cchhhhH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy11830 275 GIS-S-YSTTSICLPMDTRHL--GSKIYVH-TLLLFSSLVFAMICVCYFQIYSSLGNVLT 329 (387)
Q Consensus 275 ~~~-~-~~~~~~C~~~~~~~~--~~~~~~~-~~~~~~~iPl~ii~~~Y~~I~~~lr~~~~ 329 (387)
... . ......|...+.... ....|.. ...+.+++|+++++++|.+|++++|++++
T Consensus 262 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~I~~~l~~~~~ 321 (434)
T 4ea3_A 262 MGSAQVEDEEIECLVEIPTPQDYWGPVFAICIFLFSFIVPVLVISVCYSLMIRRLRGVRL 321 (434)
T ss_dssp HEEECCCSSCCCEEECCCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred eeeeEeecCceeEEEecCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 222 1 223445764433322 1222333 34455689999999999999999988665
No 17
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A*
Probab=99.92 E-value=1e-26 Score=234.78 Aligned_cols=193 Identities=18% Similarity=0.315 Sum_probs=155.5
Q ss_pred HHHHHHHHHHHhhccccccchhhchhhhhhhcccceeeeeeeccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy11830 117 DLCMAFYLLLLAVKDLQSTEVYFNYAYDWQKGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTE 196 (387)
Q Consensus 117 d~~~~~~~~ii~~~~~~~~~~Y~~~a~~w~~gN~lvi~vi~~~~~l~t~~~~~i~nLavaDll~~~~~~~~~~~~~~~~~ 196 (387)
....++++.+++++|+ +||+++++++.+++++|+++|++++|||++|++++++.+|..+.....
T Consensus 182 ~~~~~i~~~ii~~~gi--------------~gN~lvi~vi~~~~~lr~~~~~ll~nLAiaDll~~~~~~p~~~~~~~~-- 245 (514)
T 3sn6_R 182 VVGMGIVMSLIVLAIV--------------FGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILT-- 245 (514)
T ss_dssp HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHH--------------HhHHHhhhheecccccccHHHHHHHHHHHHHHHHHHHhCHHHHHHHHc--
Confidence 3556777788888887 999999999999999999999999999999999999888887765542
Q ss_pred eeeccccCcccC-ccchhhhHHHHHHHHHHHHHHHHHHHHHHhheeccccccc-cccchhhhhhHHHHHHHHHHhhhhhh
Q psy11830 197 VYFNYAYDWQKG-YGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANK-LTIHRTTYFILVGYVYASIMGALPMF 274 (387)
Q Consensus 197 ~~~~~~~~w~~g-~~C~~~~~~~~~~~~~Si~~L~~isidRy~aI~~P~~~~~-~t~~~~~~~i~~iWi~s~~~~~~p~~ 274 (387)
..|.+| ..|++..++..++..+|++++++||+|||++|++|++|++ .+++++..+++++|+++++++++|..
T Consensus 246 ------~~~~~~~~~C~~~~~l~~~~~~~S~~~l~~isidRy~aI~~Pl~~~~~~t~~~~~~~i~~~Wi~s~l~~~~p~~ 319 (514)
T 3sn6_R 246 ------KTWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQ 319 (514)
T ss_dssp ------TSCCSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHCCHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred ------CCeeCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccchhccchHHHHHHHHHHHHHHHHHhhhhh
Confidence 369999 8999999999999999999999999999999999999999 99999999999999999999877764
Q ss_pred -eecccCC--ceeeeccC--cCcccchhhhHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q psy11830 275 -GISSYST--TSICLPMD--TRHLGSKIYVHT-LLLFSSLVFAMICVCYFQIYSSLGNVLTAD 331 (387)
Q Consensus 275 -~~~~~~~--~~~C~~~~--~~~~~~~~~~~~-~~~~~~iPl~ii~~~Y~~I~~~lr~~~~~~ 331 (387)
.+..+.. ...|.... ........|... .++.+++|+++++++|.+|++.+|++.++.
T Consensus 320 ~~~~~~~~~~~~~c~~~~~~~~~~~~~~y~~~~~~~~~~lP~~ii~~~y~~I~~~l~~~~~~~ 382 (514)
T 3sn6_R 320 MHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQKI 382 (514)
T ss_dssp TTTTC---CHHHHHHHSSSCCCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceecccCcccceeecccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 3333221 22343221 122233344443 455568999999999999999998876543
No 18
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Probab=99.92 E-value=1.3e-26 Score=228.75 Aligned_cols=190 Identities=20% Similarity=0.265 Sum_probs=151.7
Q ss_pred HHHHHHHHHHHhhccccccchhhchhhhhhhcccceeeeeeeccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy11830 117 DLCMAFYLLLLAVKDLQSTEVYFNYAYDWQKGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTE 196 (387)
Q Consensus 117 d~~~~~~~~ii~~~~~~~~~~Y~~~a~~w~~gN~lvi~vi~~~~~l~t~~~~~i~nLavaDll~~~~~~~~~~~~~~~~~ 196 (387)
+.+..+...++++.|+ +||+++++++.+++++|+++|+++.|||++|+++++..+|..+...
T Consensus 31 ~~~~~~i~~~i~~~gi--------------~gN~~vl~~~~~~~~l~~~~~~~l~~La~~Dll~~~~~~p~~~~~~---- 92 (447)
T 4eiy_A 31 SSVYITVELAIAVLAI--------------LGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITIS---- 92 (447)
T ss_dssp HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHTHHHHHHHHH----
T ss_pred cchHHHHHHHHHHHHH--------------HHHHHHHHHHHHccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh----
Confidence 3445555666677776 9999999999999999999999999999999999998888776432
Q ss_pred eeeccccCcccC-ccchhhhHHHHHHHHHHHHHHHHHHHHHHhheeccccccc-cccchhhhhhHHHHHHHHHHhhhhhh
Q psy11830 197 VYFNYAYDWQKG-YGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANK-LTIHRTTYFILVGYVYASIMGALPMF 274 (387)
Q Consensus 197 ~~~~~~~~w~~g-~~C~~~~~~~~~~~~~Si~~L~~isidRy~aI~~P~~~~~-~t~~~~~~~i~~iWi~s~~~~~~p~~ 274 (387)
..|..| ..|++..++..++..+|++++++||+|||+||++|++|++ .+++++..+++++|+++++++++|.+
T Consensus 93 ------~~~~~~~~~C~~~~~~~~~~~~~S~~~l~~is~dRy~aI~~P~~~~~~~~~~~~~~~i~~~Wi~s~~~~~~~~~ 166 (447)
T 4eiy_A 93 ------TGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPML 166 (447)
T ss_dssp ------TTCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHSCHHHHHHHHHHHHHHHHHHHTGGGG
T ss_pred ------cccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHeEEecccccchhhhHHHHHHHHhHHHHHHHHHHHhhhh
Confidence 157677 8899999999999999999999999999999999999998 99999999999999999999989998
Q ss_pred eecccCCc-------eeeeccCc-----CcccchhhhHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q psy11830 275 GISSYSTT-------SICLPMDT-----RHLGSKIYVHT-LLLFSSLVFAMICVCYFQIYSSLGNVLTA 330 (387)
Q Consensus 275 ~~~~~~~~-------~~C~~~~~-----~~~~~~~~~~~-~~~~~~iPl~ii~~~Y~~I~~~lr~~~~~ 330 (387)
++..+... ..|.+.+. .......+... .++.+++|+++++++|.+|++.+|++.++
T Consensus 167 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~ii~~~y~~I~~~l~~~~~~ 235 (447)
T 4eiy_A 167 GWNNCGQPKEGKNHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLAD 235 (447)
T ss_dssp TCSSTTSCCHHHHHHTTCCTTEEECCHHHHSCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeccccccCccccccccccccchhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 77654421 22432211 11111222222 23445899999999999999999987554
No 19
>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein; NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A
Probab=98.40 E-value=6.4e-08 Score=58.31 Aligned_cols=29 Identities=38% Similarity=0.442 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHhheeccccccc-cccc
Q psy11830 224 LSIFTLGMITLERWYSIKRALYANK-LTIH 252 (387)
Q Consensus 224 ~Si~~L~~isidRy~aI~~P~~~~~-~t~~ 252 (387)
+|++++++||+|||+||++|++|.. .+++
T Consensus 2 ~Si~~L~~is~dRy~aI~~Pl~~~~~~t~~ 31 (32)
T 1hll_A 2 SSIVHLCAISLDRYWSITQAIEYNLKRTPR 31 (32)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHGGGSSCCCC
T ss_pred cHHHHHHHHHHHHHHHhhhhhhcccccCCC
Confidence 6899999999999999999999987 6654
No 20
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.25 E-value=5.9e-07 Score=85.51 Aligned_cols=48 Identities=8% Similarity=0.137 Sum_probs=43.4
Q ss_pred cceeeEEEc-cCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830 6 NSLLDMKIV-RTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS 53 (387)
Q Consensus 6 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~ 53 (387)
.+|.+|++. +|+++.||++.|+++++|+.|||++|+|+.+++..|.++
T Consensus 177 ~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L 225 (350)
T 4ay9_X 177 TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENL 225 (350)
T ss_dssp EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTC
T ss_pred cchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccc
Confidence 468888886 589999999999999999999999999999999988876
No 21
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.09 E-value=1.9e-06 Score=73.18 Aligned_cols=56 Identities=5% Similarity=0.077 Sum_probs=46.2
Q ss_pred ccceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCcccccccccC
Q psy11830 5 ANSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSKI 62 (387)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~~ 62 (387)
..+|++|++++|+|+.++...|.++.+|+.|+|++|+|+.+++..|.++ .+++.+.
T Consensus 29 ~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l--~~L~~L~ 84 (170)
T 3g39_A 29 PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKL--TQLTQLS 84 (170)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTC--TTCCEEE
T ss_pred CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCC--CCCCEEE
Confidence 4678889999999999988889999999999999999999998888776 4444443
No 22
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.07 E-value=2.5e-06 Score=74.08 Aligned_cols=47 Identities=21% Similarity=0.384 Sum_probs=23.7
Q ss_pred ceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830 7 SLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS 53 (387)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~ 53 (387)
+|++|++++|+|..++...|.++.+|+.|+|++|+|+.+++.+|.++
T Consensus 55 ~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l 101 (193)
T 2wfh_A 55 HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGL 101 (193)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTC
T ss_pred CCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCC
Confidence 34455555555555555555555555555555555555555544443
No 23
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.02 E-value=3.4e-06 Score=71.96 Aligned_cols=55 Identities=5% Similarity=0.136 Sum_probs=44.8
Q ss_pred ccceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCccccccccc
Q psy11830 5 ANSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSK 61 (387)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~ 61 (387)
..+|++|++++|+|+.+++..|.++++|+.|+|++|+|+.+++..|.++ .+++.+
T Consensus 32 ~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l--~~L~~L 86 (174)
T 2r9u_A 32 PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKL--TQLTQL 86 (174)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC--TTCCEE
T ss_pred CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCc--chhhEE
Confidence 3678889999999999988888889999999999999999888888665 444444
No 24
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.97 E-value=5.4e-06 Score=70.40 Aligned_cols=54 Identities=17% Similarity=0.182 Sum_probs=48.4
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCccccccccc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSK 61 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~ 61 (387)
.+|++|++++|+|+.+|+..|..+++|+.|+|++|+|+.+++..|..+ .+++.+
T Consensus 54 ~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l--~~L~~L 107 (170)
T 3g39_A 54 TQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNL--KSLTHI 107 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC--TTCCEE
T ss_pred ccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCC--CCCCEE
Confidence 579999999999999999999999999999999999999999999776 444433
No 25
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.96 E-value=5.4e-06 Score=73.49 Aligned_cols=48 Identities=13% Similarity=0.162 Sum_probs=35.4
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS 53 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~ 53 (387)
.+|++|++++|+|..++...|.++++|+.|+|++|+|+.+++..|.++
T Consensus 56 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l 103 (220)
T 2v9t_B 56 KKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGL 103 (220)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCC
Confidence 467777777777777777777777777777777777777777777655
No 26
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.95 E-value=6.4e-06 Score=70.26 Aligned_cols=54 Identities=19% Similarity=0.158 Sum_probs=48.2
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCccccccccc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSK 61 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~ 61 (387)
.+|++|++++|+|+.+|+..|.++++|+.|+|++|+|+.+++..|..+ .+++.+
T Consensus 57 ~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l--~~L~~L 110 (174)
T 2r9u_A 57 VNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNL--KSLTHI 110 (174)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC--TTCSEE
T ss_pred cCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccc--cCCCEE
Confidence 579999999999999999999999999999999999999999989776 444443
No 27
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.84 E-value=9.5e-06 Score=71.87 Aligned_cols=54 Identities=13% Similarity=0.213 Sum_probs=43.5
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCccccccccc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSK 61 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~ 61 (387)
.+|++|++++|+|+.+++..|.++.+|+.|+|++|+|+.+++..|.++ .+++.+
T Consensus 57 ~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l--~~L~~L 110 (220)
T 2v70_A 57 PQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGL--ESLKTL 110 (220)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTC--SSCCEE
T ss_pred CCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCC--cCCCEE
Confidence 468888888888888888888888888888888888888888888766 444444
No 28
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.83 E-value=1.1e-05 Score=69.80 Aligned_cols=48 Identities=19% Similarity=0.136 Sum_probs=32.3
Q ss_pred cceeeEEEccCccccCCCC-CcccccceeEEEecCCcceeeccccccCc
Q psy11830 6 NSLLDMKIVRTGLNHIPQF-PVSNDLVMEVIFLGYNNIKIIEGRAFNGS 53 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~l~~n~i~~~~~~~f~~~ 53 (387)
.+|++|++++|+|..+|+. .|..+++|+.|+|++|+|+.+++..|.++
T Consensus 29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 77 (192)
T 1w8a_A 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGA 77 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTC
T ss_pred CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCc
Confidence 3666777777777777653 46667777777777777777766666655
No 29
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.81 E-value=1.1e-05 Score=71.45 Aligned_cols=56 Identities=20% Similarity=0.268 Sum_probs=48.9
Q ss_pred ccceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCcccccccccC
Q psy11830 5 ANSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSKI 62 (387)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~~ 62 (387)
..+|++|++++|+|+.+|+..|.++++|+.|+|++|+|+.+++.+|.++ .+++.+.
T Consensus 31 ~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l--~~L~~L~ 86 (220)
T 2v9t_B 31 PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGL--RSLNSLV 86 (220)
T ss_dssp CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTC--SSCCEEE
T ss_pred CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCC--cCCCEEE
Confidence 3578999999999999999999999999999999999999999999887 4454443
No 30
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.80 E-value=6.8e-06 Score=83.62 Aligned_cols=49 Identities=18% Similarity=0.217 Sum_probs=40.6
Q ss_pred ccceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830 5 ANSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS 53 (387)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~ 53 (387)
-.++++||+++|+|+.||+..|+++++|+.|||++|+|+.+++.+|.++
T Consensus 51 p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L 99 (635)
T 4g8a_A 51 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL 99 (635)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTC
T ss_pred CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCC
Confidence 3577888888888888888888888888888888888888888888776
No 31
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.79 E-value=1.3e-05 Score=71.39 Aligned_cols=48 Identities=8% Similarity=0.157 Sum_probs=29.3
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS 53 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~ 53 (387)
.+|++|++++|+|..++...|.++.+|+.|+|++|+|+.+++..|.++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l 87 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSL 87 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccC
Confidence 455666666666666666666666666666666666666666555544
No 32
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.78 E-value=1.3e-05 Score=70.94 Aligned_cols=55 Identities=16% Similarity=0.145 Sum_probs=45.0
Q ss_pred ccceeeEEEccCccccC-CCCCcccccceeEEEecCCcceeeccccccCccccccccc
Q psy11830 5 ANSLLDMKIVRTGLNHI-PQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSK 61 (387)
Q Consensus 5 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~ 61 (387)
.+.+++|++++|+|+.+ |+..|..+++|+.|+|++|+|+.+++.+|.++ .+++.+
T Consensus 31 ~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l--~~L~~L 86 (220)
T 2v70_A 31 PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGA--SGVNEI 86 (220)
T ss_dssp CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTC--TTCCEE
T ss_pred CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCC--CCCCEE
Confidence 45678899999999999 45778999999999999999999999888776 444444
No 33
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.78 E-value=1.4e-05 Score=69.37 Aligned_cols=70 Identities=16% Similarity=0.301 Sum_probs=54.3
Q ss_pred ccceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCcccccccccCCCCccccC-CCCCCCc
Q psy11830 5 ANSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSKIRPEQKLNP-RPSAYNT 77 (387)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~~~~~~~~~p-~~~~~~~ 77 (387)
..+|++|++++|+|+.+| ..|.++.+|+.|+|++|+|+.+++.+|.++ .+++.+...+..-+. .++.|..
T Consensus 30 ~~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l--~~L~~L~Ls~N~l~~i~~~~f~~ 100 (193)
T 2wfh_A 30 PRDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNM--TQLLTLILSYNRLRCIPPRTFDG 100 (193)
T ss_dssp CTTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTC--TTCCEEECCSSCCCBCCTTTTTT
T ss_pred CCCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCC--CCCCEEECCCCccCEeCHHHhCC
Confidence 468999999999999999 689999999999999999999999999887 555555433332222 3445544
No 34
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.75 E-value=1.8e-05 Score=67.20 Aligned_cols=48 Identities=15% Similarity=0.193 Sum_probs=35.0
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS 53 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~ 53 (387)
.+|++|++++|+++.+|...|+++++|+.|+|++|+|+.+++..|.+.
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 75 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKL 75 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCC
Confidence 467777777777777777777777777777777777777777766555
No 35
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.72 E-value=1.6e-05 Score=80.77 Aligned_cols=55 Identities=18% Similarity=0.186 Sum_probs=49.0
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCcccccccccC
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSKI 62 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~~ 62 (387)
.+|++|++++|+|+.||+..|+++.+|+.|+|++|+|+.+++..|.++ .+++.+.
T Consensus 76 ~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L--~~L~~L~ 130 (635)
T 4g8a_A 76 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL--SSLQKLV 130 (635)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTC--TTCCEEE
T ss_pred CCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCC--CCCCEEE
Confidence 479999999999999999999999999999999999999999999887 5555443
No 36
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.69 E-value=2.2e-05 Score=74.13 Aligned_cols=57 Identities=11% Similarity=0.120 Sum_probs=47.4
Q ss_pred cceeeEEEcc-CccccCCCCCcccccceeEEEecCCcceeeccccccCcccccccccCCC
Q psy11830 6 NSLLDMKIVR-TGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSKIRP 64 (387)
Q Consensus 6 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~~~~ 64 (387)
.+|++|+|++ |+|..+|+..|.++.+|+.|||++|+|+.+++.+|.++ .+|+.+...
T Consensus 31 ~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l--~~L~~L~l~ 88 (347)
T 2ifg_A 31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFT--PRLSRLNLS 88 (347)
T ss_dssp SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSC--SCCCEEECC
T ss_pred CCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCC--cCCCEEeCC
Confidence 3589999996 99999999999999999999999999999999999877 555544333
No 37
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=97.61 E-value=3.7e-05 Score=69.25 Aligned_cols=48 Identities=17% Similarity=0.279 Sum_probs=38.2
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS 53 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~ 53 (387)
.+|++|++++|+|..+|...|+.+++|+.|+|++|+|+.+++..|...
T Consensus 83 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 130 (251)
T 3m19_A 83 TELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRL 130 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccC
Confidence 467888888888888888888888888888888888888887777655
No 38
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.61 E-value=3.9e-05 Score=66.90 Aligned_cols=48 Identities=15% Similarity=0.194 Sum_probs=37.7
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS 53 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~ 53 (387)
.+|++|++++|+++.+|...|.++++|+.|+|++|+|+.+++..|.+.
T Consensus 52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 99 (208)
T 2o6s_A 52 TSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKL 99 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred ccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCc
Confidence 467788888888888888778888888888888888888877777655
No 39
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.59 E-value=2.4e-05 Score=73.52 Aligned_cols=82 Identities=21% Similarity=0.333 Sum_probs=65.2
Q ss_pred ccceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCccccccc-ccCCCCccccC-CCCCCCchhhhH
Q psy11830 5 ANSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFV-SKIRPEQKLNP-RPSAYNTYYNFT 82 (387)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~-~~~~~~~~~~p-~~~~~~~~~~~l 82 (387)
..+|+++++++|+++.||+..|.++.+|+.++|++| ++.|++.+|.++ ..++ .+..++ .... ++++|..|...-
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~--~~L~~~l~l~~-~l~~I~~~aF~~c~~L~ 300 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNC--GRLAGTLELPA-SVTAIEFGAFMGCDNLR 300 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTC--TTCCEEEEECT-TCCEECTTTTTTCTTEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCC--hhccEEEEEcc-cceEEchhhhhCCccCC
Confidence 468999999999999999999999999999999998 999999999998 6665 554444 3322 678888887655
Q ss_pred HhhhccCe
Q psy11830 83 RLIFPGNA 90 (387)
Q Consensus 83 ~~~~~gn~ 90 (387)
.+.+-+|.
T Consensus 301 ~l~l~~n~ 308 (329)
T 3sb4_A 301 YVLATGDK 308 (329)
T ss_dssp EEEECSSC
T ss_pred EEEeCCCc
Confidence 54443443
No 40
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.59 E-value=4.3e-05 Score=64.87 Aligned_cols=54 Identities=9% Similarity=0.258 Sum_probs=45.5
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCccccccccc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSK 61 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~ 61 (387)
.+|++|++++|+|..+|+..|.++++|+.|+|++|+|+.+++..|.+. .+++.+
T Consensus 52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l--~~L~~L 105 (177)
T 2o6r_A 52 TQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKL--TQLKEL 105 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC--TTCCEE
T ss_pred ccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCC--cccCEE
Confidence 578999999999999999999999999999999999999998888765 444444
No 41
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.58 E-value=3.4e-05 Score=73.55 Aligned_cols=48 Identities=13% Similarity=0.134 Sum_probs=34.9
Q ss_pred cceeeEEEccCccccCCCCCcc-cccceeEEEecCCcceeeccccccCc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVS-NDLVMEVIFLGYNNIKIIEGRAFNGS 53 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~l~~n~i~~~~~~~f~~~ 53 (387)
+.+++|++++|+|+.+++..|. ++.+|+.|+|++|+|+.+++.+|.++
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l 87 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPV 87 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCC
Confidence 4566777777777777777776 77777777777777777777777665
No 42
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.58 E-value=3.6e-05 Score=72.67 Aligned_cols=49 Identities=16% Similarity=0.308 Sum_probs=46.3
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCcc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQ 54 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~ 54 (387)
.+|++|+|++|+|+.+|+..|.++++|+.|||++|+|+.+++..|..++
T Consensus 56 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~ 104 (347)
T 2ifg_A 56 GELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS 104 (347)
T ss_dssp CCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC
T ss_pred cCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC
Confidence 5799999999999999999999999999999999999999999998764
No 43
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.55 E-value=5.3e-05 Score=66.03 Aligned_cols=55 Identities=13% Similarity=0.216 Sum_probs=47.6
Q ss_pred ccceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCccccccccc
Q psy11830 5 ANSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSK 61 (387)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~ 61 (387)
..+|++|++++|+++.+|+..|+++++|+.|+|++|+++.+++..|.+. .+++.+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L 81 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKL--TSLTYL 81 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTC--TTCCEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCC--CCcCEE
Confidence 3578999999999999999999999999999999999999999888776 444444
No 44
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.54 E-value=5.5e-05 Score=67.28 Aligned_cols=68 Identities=16% Similarity=0.190 Sum_probs=53.4
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCcccccccccCCCCccccCCCCCC
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSKIRPEQKLNPRPSAY 75 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~~~~~~~~~p~~~~~ 75 (387)
.+|++|++++|+|..+|...|.++++|+.|+|++|+|+.+++..|..+ .+++.+...+.+-..-|+.+
T Consensus 64 ~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l--~~L~~L~Ls~N~l~~lp~~~ 131 (229)
T 3e6j_A 64 INLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRL--VHLKELFMCCNKLTELPRGI 131 (229)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC--TTCCEEECCSSCCCSCCTTG
T ss_pred cCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcc--hhhCeEeccCCcccccCccc
Confidence 579999999999999999999999999999999999999999998776 55555543333333344444
No 45
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=97.53 E-value=5.7e-05 Score=67.99 Aligned_cols=54 Identities=9% Similarity=0.039 Sum_probs=47.4
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCccccccccc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSK 61 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~ 61 (387)
.+|++|++++|+|+.+++..|.++++|+.|+|++|+|+.+++..|... .+++.+
T Consensus 59 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L 112 (251)
T 3m19_A 59 TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHL--TQLDKL 112 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTC--TTCCEE
T ss_pred ccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhccc--CCCCEE
Confidence 579999999999999999999999999999999999999999988776 444444
No 46
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=97.53 E-value=5.2e-05 Score=70.07 Aligned_cols=48 Identities=13% Similarity=0.155 Sum_probs=41.0
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS 53 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~ 53 (387)
.+|++|++++|+|+.+|...|.++.+|+.|+|++|+|+.+++..|..+
T Consensus 100 ~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 147 (290)
T 1p9a_G 100 PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 147 (290)
T ss_dssp TTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTC
T ss_pred CCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccc
Confidence 468888888888888888888888888888888888888888888765
No 47
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.51 E-value=5.9e-05 Score=65.14 Aligned_cols=55 Identities=22% Similarity=0.288 Sum_probs=46.9
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCcccccccccC
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSKI 62 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~~ 62 (387)
.+|++|++++|+|+.++...|.++++|+.|+|++|+|+.+++..|.++ .+++.+.
T Consensus 54 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l--~~L~~L~ 108 (192)
T 1w8a_A 54 PHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGL--HQLKTLN 108 (192)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTC--TTCCEEE
T ss_pred CCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCC--CCCCEEE
Confidence 478999999999999998999999999999999999999999988776 4454443
No 48
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=97.44 E-value=3.5e-05 Score=68.77 Aligned_cols=49 Identities=22% Similarity=0.354 Sum_probs=43.5
Q ss_pred ccceeeEEEccCccccCCCCCcccccceeEEEecCCc-ceeeccccccCc
Q psy11830 5 ANSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNN-IKIIEGRAFNGS 53 (387)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~-i~~~~~~~f~~~ 53 (387)
..+|++|++++|+|+.+|+..|+++++|+.|+|++|+ ++.+++.+|.++
T Consensus 30 ~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l 79 (239)
T 2xwt_C 30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNL 79 (239)
T ss_dssp CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESC
T ss_pred CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCC
Confidence 4578999999999999999999999999999999997 999999888776
No 49
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=97.44 E-value=8.4e-05 Score=68.61 Aligned_cols=53 Identities=13% Similarity=0.180 Sum_probs=44.8
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCccccccccc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSK 61 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~ 61 (387)
.+|++|++++|+|..+|+ .+..+++|+.|+|++|+|+.+++..|.++ ..++.+
T Consensus 77 ~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~l~~N~l~~l~~~~~~~l--~~L~~L 129 (290)
T 1p9a_G 77 PVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGL--GELQEL 129 (290)
T ss_dssp TTCCEEECCSSCCSSCCC-CTTTCTTCCEEECCSSCCCCCCSSTTTTC--TTCCEE
T ss_pred CcCCEEECCCCcCCcCch-hhccCCCCCEEECCCCcCcccCHHHHcCC--CCCCEE
Confidence 578999999999999986 56789999999999999999999999876 444444
No 50
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.43 E-value=8.4e-05 Score=70.45 Aligned_cols=49 Identities=22% Similarity=0.289 Sum_probs=45.0
Q ss_pred ccceeeEEEccCccccCCCCCcccccceeEEEecCCcc-eeeccccccCc
Q psy11830 5 ANSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNI-KIIEGRAFNGS 53 (387)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i-~~~~~~~f~~~ 53 (387)
-.++++|++++|+|+.||++.|+++++|+.|+|++|+| +.+++.+|.++
T Consensus 29 ~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L 78 (350)
T 4ay9_X 29 PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNL 78 (350)
T ss_dssp CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSC
T ss_pred CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcc
Confidence 35799999999999999999999999999999999998 56899999876
No 51
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.38 E-value=9.1e-05 Score=70.54 Aligned_cols=71 Identities=11% Similarity=0.123 Sum_probs=55.2
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCcccccccccCCCCccccC-CCCCCCch
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSKIRPEQKLNP-RPSAYNTY 78 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~~~~~~~~~p-~~~~~~~~ 78 (387)
.+|++|++++|+|..++...|.++++|+.|||++|+|+.+++..|.++ .+++.+...+..... .++.|...
T Consensus 64 ~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l--~~L~~L~L~~N~i~~~~~~~~~~l 135 (361)
T 2xot_A 64 TNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDL--QALEVLLLYNNHIVVVDRNAFEDM 135 (361)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC--TTCCEEECCSSCCCEECTTTTTTC
T ss_pred cccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCC--cCCCEEECCCCcccEECHHHhCCc
Confidence 579999999999999999999999999999999999999999999887 555555333322221 34555443
No 52
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=97.38 E-value=0.00011 Score=66.87 Aligned_cols=48 Identities=19% Similarity=0.360 Sum_probs=37.0
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS 53 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~ 53 (387)
.+|++|++++|+++.+|...|+++++|+.|+|++|+|+.+++..|.+.
T Consensus 109 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 156 (270)
T 2o6q_A 109 VNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKL 156 (270)
T ss_dssp SSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred cCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCC
Confidence 467778888888888887777777888888888888887777777655
No 53
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=97.36 E-value=0.00012 Score=66.59 Aligned_cols=48 Identities=10% Similarity=0.247 Sum_probs=36.3
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS 53 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~ 53 (387)
.+|++|++++|+|..+|...|.++++|+.|+|++|+|+.+++..|.++
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l 84 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKEL 84 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSC
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCC
Confidence 467777777777777777777777777777777777777777777655
No 54
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=97.35 E-value=0.00012 Score=71.61 Aligned_cols=45 Identities=20% Similarity=0.339 Sum_probs=22.5
Q ss_pred ceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830 7 SLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS 53 (387)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~ 53 (387)
+|++|++++|+++.+|+ +.++.+|+.|+|++|+|+.+++..|.++
T Consensus 186 ~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 230 (440)
T 3zyj_A 186 NLRYLNLAMCNLREIPN--LTPLIKLDELDLSGNHLSAIRPGSFQGL 230 (440)
T ss_dssp SCCEEECTTSCCSSCCC--CTTCSSCCEEECTTSCCCEECTTTTTTC
T ss_pred ccCeecCCCCcCccccc--cCCCcccCEEECCCCccCccChhhhccC
Confidence 45555555555555543 3444455555555555555555444443
No 55
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.25 E-value=0.00017 Score=65.74 Aligned_cols=56 Identities=18% Similarity=0.210 Sum_probs=44.2
Q ss_pred cccceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCccccccccc
Q psy11830 4 YANSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSK 61 (387)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~ 61 (387)
+..+|++|++++|+++.+|...|.++++|+.|+|++|+|+.+++..|.+. .+++.+
T Consensus 26 l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L 81 (276)
T 2z62_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL--SHLSTL 81 (276)
T ss_dssp SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTC--TTCCEE
T ss_pred CCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCC--cCCCEE
Confidence 34578888888888888888888888888888888888888888888765 444443
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=97.23 E-value=0.00018 Score=70.64 Aligned_cols=48 Identities=27% Similarity=0.340 Sum_probs=39.2
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS 53 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~ 53 (387)
.++++|++++|+|+.++...|+++++|+.|+|++|+|+.+++..|.++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l 122 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGL 122 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCc
Confidence 567888888888888888888888888888888888888888888765
No 57
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.22 E-value=0.00013 Score=61.76 Aligned_cols=45 Identities=7% Similarity=-0.017 Sum_probs=36.5
Q ss_pred ceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830 7 SLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS 53 (387)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~ 53 (387)
+|++|++++|+|+.+ ..+..+++|+.|+|++|+|+.+++..|.+.
T Consensus 43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l 87 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQAL 87 (176)
T ss_dssp CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHC
T ss_pred CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcC
Confidence 788888888888888 467788888888888888888887776554
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=97.22 E-value=0.00021 Score=65.34 Aligned_cols=48 Identities=15% Similarity=0.256 Sum_probs=33.0
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS 53 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~ 53 (387)
.+|++|++++|++..++...|.++++|+.|+|++|+++.+++..|...
T Consensus 105 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 152 (285)
T 1ozn_A 105 GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL 152 (285)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred cCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccC
Confidence 356677777777777766667777777777777777777766666554
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=97.21 E-value=0.00019 Score=70.09 Aligned_cols=49 Identities=22% Similarity=0.248 Sum_probs=40.8
Q ss_pred ccceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830 5 ANSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS 53 (387)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~ 53 (387)
..++++|++++|+|+.++...|+++++|+.|+|++|+|+.+++.+|.++
T Consensus 63 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l 111 (440)
T 3zyj_A 63 STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGL 111 (440)
T ss_dssp CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTC
T ss_pred CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCC
Confidence 3567888888888888888888888888888888888888888888776
No 60
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=97.20 E-value=0.00023 Score=64.77 Aligned_cols=48 Identities=15% Similarity=0.230 Sum_probs=38.1
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS 53 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~ 53 (387)
.+|++|++++|+++.+|...|..+++|+.|+|++|+++.+++..|...
T Consensus 109 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 156 (272)
T 3rfs_A 109 TNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKL 156 (272)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred cCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccC
Confidence 567888888888888888888888888888888888888887777655
No 61
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=97.20 E-value=0.00018 Score=70.62 Aligned_cols=45 Identities=16% Similarity=0.253 Sum_probs=25.3
Q ss_pred ceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830 7 SLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS 53 (387)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~ 53 (387)
+|++|++++|+++.+|+ +..+.+|+.|+|++|+|+.+++..|.++
T Consensus 197 ~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 241 (452)
T 3zyi_A 197 NLKYLNLGMCNIKDMPN--LTPLVGLEELEMSGNHFPEIRPGSFHGL 241 (452)
T ss_dssp TCCEEECTTSCCSSCCC--CTTCTTCCEEECTTSCCSEECGGGGTTC
T ss_pred CCCEEECCCCccccccc--ccccccccEEECcCCcCcccCcccccCc
Confidence 45556666666665553 4455555555555555555555555544
No 62
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.18 E-value=0.00022 Score=64.84 Aligned_cols=54 Identities=19% Similarity=0.170 Sum_probs=47.6
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCccccccccc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSK 61 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~ 61 (387)
.+|++|++++|+++.++...|.++++|+.|+|++|+++.+++..|.++ .+++.+
T Consensus 52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L 105 (276)
T 2z62_A 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL--SSLQKL 105 (276)
T ss_dssp TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTC--TTCCEE
T ss_pred cCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCC--ccccEE
Confidence 579999999999999999999999999999999999999999999776 444443
No 63
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=97.18 E-value=0.00012 Score=65.33 Aligned_cols=48 Identities=13% Similarity=0.096 Sum_probs=43.8
Q ss_pred cceeeEEEccCc-cccCCCCCcccccceeEEEecC-CcceeeccccccCc
Q psy11830 6 NSLLDMKIVRTG-LNHIPQFPVSNDLVMEVIFLGY-NNIKIIEGRAFNGS 53 (387)
Q Consensus 6 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~l~~-n~i~~~~~~~f~~~ 53 (387)
.+|++|++++|+ ++.+|+..|+++++|+.|+|++ |+|+.+++..|.+.
T Consensus 55 ~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l 104 (239)
T 2xwt_C 55 PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKEL 104 (239)
T ss_dssp TTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECC
T ss_pred CCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCC
Confidence 578999999997 9999999999999999999998 99999999998776
No 64
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=97.17 E-value=0.00026 Score=64.50 Aligned_cols=48 Identities=13% Similarity=0.164 Sum_probs=34.5
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS 53 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~ 53 (387)
.+|++|++++|+++.+|...|.++++|+.|+|++|+++.+++..|.++
T Consensus 85 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 132 (272)
T 3rfs_A 85 TNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKL 132 (272)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTC
T ss_pred CCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccC
Confidence 356777777777777777777777777777777777777777666554
No 65
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.15 E-value=0.0001 Score=62.55 Aligned_cols=44 Identities=14% Similarity=0.139 Sum_probs=32.9
Q ss_pred cceeeEEEccCccccCCCCCccccc-ceeEEEecCCcceeeccccccCc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDL-VMEVIFLGYNNIKIIEGRAFNGS 53 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~l~~n~i~~~~~~~f~~~ 53 (387)
.+|++|++++|+++.+|+ +..+. +|+.|+|++|.|+.+ ..|.++
T Consensus 19 ~~L~~L~l~~n~l~~i~~--~~~~~~~L~~L~Ls~N~l~~~--~~l~~l 63 (176)
T 1a9n_A 19 VRDRELDLRGYKIPVIEN--LGATLDQFDAIDFSDNEIRKL--DGFPLL 63 (176)
T ss_dssp TSCEEEECTTSCCCSCCC--GGGGTTCCSEEECCSSCCCEE--CCCCCC
T ss_pred CCceEEEeeCCCCchhHH--hhhcCCCCCEEECCCCCCCcc--cccccC
Confidence 468889999999988854 33444 889999999998888 455544
No 66
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=97.07 E-value=0.00021 Score=67.59 Aligned_cols=49 Identities=14% Similarity=0.272 Sum_probs=41.1
Q ss_pred ccceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830 5 ANSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS 53 (387)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~ 53 (387)
..+|++|++++|+|+.+|...|+++++|+.|+|++|+|+.+++..|.+.
T Consensus 51 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 99 (353)
T 2z80_A 51 TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSL 99 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCC
Confidence 3578888888888888888888888888888888888888888888765
No 67
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=97.06 E-value=0.00035 Score=63.85 Aligned_cols=55 Identities=15% Similarity=0.236 Sum_probs=47.0
Q ss_pred ccceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCccccccccc
Q psy11830 5 ANSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSK 61 (387)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~ 61 (387)
..+|++|++++|+|+.+|...|+++++|+.|+|++|+|+.+++..|.+. ..++.+
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L 85 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGL--ALLEQL 85 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC--TTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCc--cCCCEE
Confidence 4678999999999999999999999999999999999999999888776 444443
No 68
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=97.04 E-value=0.00032 Score=69.14 Aligned_cols=47 Identities=17% Similarity=0.130 Sum_probs=24.0
Q ss_pred ceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830 7 SLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS 53 (387)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~ 53 (387)
+|++|++++|+++.+|+..|.++++|+.|+|++|+|+.+.+..|.++
T Consensus 81 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l 127 (477)
T 2id5_A 81 NLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDL 127 (477)
T ss_dssp TCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred cCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHcccc
Confidence 44555555555555555555555555555555555555555444443
No 69
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=97.02 E-value=0.00037 Score=68.60 Aligned_cols=47 Identities=26% Similarity=0.446 Sum_probs=36.6
Q ss_pred ceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830 7 SLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS 53 (387)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~ 53 (387)
+|++|++++|+++.+|...|.++++|+.|+|++|.|+.+++..|.++
T Consensus 225 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 271 (477)
T 2id5_A 225 NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHEL 271 (477)
T ss_dssp CCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTC
T ss_pred cccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhcccc
Confidence 67788888888888877777777788888888888887777777665
No 70
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=97.01 E-value=0.00038 Score=70.70 Aligned_cols=55 Identities=18% Similarity=0.242 Sum_probs=44.6
Q ss_pred ccceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCccccccccc
Q psy11830 5 ANSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSK 61 (387)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~ 61 (387)
..++++|++++|+++.+++..|+++++|+.|+|++|+|+.+++.+|.++ .+++.+
T Consensus 31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l--~~L~~L 85 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGL--HHLSNL 85 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTC--TTCCEE
T ss_pred CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhch--hhcCEe
Confidence 4678888888888888888888888888888888888888888888776 444444
No 71
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=97.00 E-value=0.00043 Score=66.30 Aligned_cols=47 Identities=11% Similarity=0.357 Sum_probs=27.8
Q ss_pred ceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830 7 SLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS 53 (387)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~ 53 (387)
+|++|++++|++..+|...|+.+++|+.|+|++|.|+.+++..|.+.
T Consensus 70 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 116 (390)
T 3o6n_A 70 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV 116 (390)
T ss_dssp CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred cCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCC
Confidence 45566666666666665566666666666666666666655555444
No 72
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=96.99 E-value=0.00026 Score=66.97 Aligned_cols=54 Identities=20% Similarity=0.207 Sum_probs=46.6
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCccccccccc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSK 61 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~ 61 (387)
.+|++|++++|+++.++...|+++++|+.|+|++|+|+.+++..|.+. .+++.+
T Consensus 76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L 129 (353)
T 2z80_A 76 VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPL--SSLTFL 129 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTC--TTCSEE
T ss_pred CCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCC--ccCCEE
Confidence 578999999999999999999999999999999999999999888776 444444
No 73
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=96.92 E-value=0.00045 Score=70.14 Aligned_cols=55 Identities=16% Similarity=0.098 Sum_probs=45.1
Q ss_pred ccceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCccccccccc
Q psy11830 5 ANSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSK 61 (387)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~ 61 (387)
-+++++|++++|+|+.+++..|+++++|+.|+|++|+|+.+++.+|.++ .+++.+
T Consensus 32 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l--~~L~~L 86 (606)
T 3t6q_A 32 PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQ--HRLDTL 86 (606)
T ss_dssp CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTC--TTCCEE
T ss_pred CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCc--cccCee
Confidence 4578889999999999988888889999999999999998888888776 444444
No 74
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=96.88 E-value=0.00052 Score=68.91 Aligned_cols=49 Identities=18% Similarity=0.217 Sum_probs=37.7
Q ss_pred ccceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830 5 ANSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS 53 (387)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~ 53 (387)
..+++.|++++|+++.+++..|+++++|+.|||++|+|+.+++.+|.++
T Consensus 27 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l 75 (570)
T 2z63_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL 75 (570)
T ss_dssp CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTC
T ss_pred cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCc
Confidence 3567778888888888877777778888888888888888777777665
No 75
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=96.87 E-value=0.0005 Score=67.07 Aligned_cols=48 Identities=17% Similarity=0.191 Sum_probs=37.8
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS 53 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~ 53 (387)
.+|++|++++|++..++...|.++++|+.|+|++|+++.+++..|.+.
T Consensus 299 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 346 (455)
T 3v47_A 299 TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENL 346 (455)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTC
T ss_pred CCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCc
Confidence 467788888888888877778888888888888888888877777665
No 76
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.87 E-value=0.0004 Score=70.36 Aligned_cols=37 Identities=11% Similarity=0.207 Sum_probs=20.1
Q ss_pred eeeEEEccCccccCCCCCcccccceeEEEecCCcceeec
Q psy11830 8 LLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIE 46 (387)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~ 46 (387)
|+.|++++|+|+.+|+ +.++++|+.|+|++|+|+.+|
T Consensus 443 L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N~l~~lp 479 (567)
T 1dce_A 443 VRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALP 479 (567)
T ss_dssp CSEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCCCCC
T ss_pred ceEEEecCCCCCCCcC--ccccccCcEeecCcccccccc
Confidence 4455555555555553 555555555555555555554
No 77
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=96.86 E-value=0.0009 Score=62.45 Aligned_cols=55 Identities=16% Similarity=0.088 Sum_probs=47.1
Q ss_pred ccceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCccccccccc
Q psy11830 5 ANSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSK 61 (387)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~ 61 (387)
..+|++|++++|+|+.+|+..|+++++|+.|+|++|+|+.+++..|.++ .+++.+
T Consensus 51 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L 105 (330)
T 1xku_A 51 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPL--VKLERL 105 (330)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTC--TTCCEE
T ss_pred CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCC--CCCCEE
Confidence 4578899999999999999999999999999999999999999888776 444444
No 78
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=96.86 E-value=0.00052 Score=64.12 Aligned_cols=48 Identities=10% Similarity=0.223 Sum_probs=31.4
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS 53 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~ 53 (387)
.+|++|++++|+++.++...|..+++|+.|+|++|+|+.+++..|.+.
T Consensus 192 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 239 (330)
T 1xku_A 192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT 239 (330)
T ss_dssp TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGS
T ss_pred ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCC
Confidence 456666666666666666666666667777777777766666666544
No 79
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=96.85 E-value=0.00046 Score=57.75 Aligned_cols=48 Identities=10% Similarity=0.021 Sum_probs=39.1
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeecc-ccccCc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEG-RAFNGS 53 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~-~~f~~~ 53 (387)
.+|++|++++|++...++..+.++++|+.|+|++|+|+.++. ..+..+
T Consensus 71 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l 119 (168)
T 2ell_A 71 PKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKL 119 (168)
T ss_dssp SSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSC
T ss_pred CCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcC
Confidence 478899999999998667777788999999999999998865 566554
No 80
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.84 E-value=0.00065 Score=54.84 Aligned_cols=41 Identities=17% Similarity=0.146 Sum_probs=27.9
Q ss_pred eEEEccCccc--cCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830 10 DMKIVRTGLN--HIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS 53 (387)
Q Consensus 10 ~~~~~~~~~~--~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~ 53 (387)
.++.++++++ .+|+.... +|+.|||++|+|+.+++..|.++
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp~---~l~~L~Ls~N~l~~l~~~~f~~l 54 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFPV---DTTELVLTGNNLTALPPGLLDAL 54 (130)
T ss_dssp EEECCSSCCCTTTSCSCCCT---TCSEEECTTSCCSSCCTTTGGGC
T ss_pred EEEeCCCCCccccCCCCCCc---CCCEEECCCCcCCccChhhhhhc
Confidence 5667777777 77754332 46677777777777777777665
No 81
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=96.84 E-value=0.00063 Score=68.31 Aligned_cols=48 Identities=19% Similarity=0.185 Sum_probs=42.9
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS 53 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~ 53 (387)
.+|++|++++|+++.+++..|+++++|+.|+|++|+++.+++.+|.++
T Consensus 52 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 99 (570)
T 2z63_A 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL 99 (570)
T ss_dssp SSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTC
T ss_pred CCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCc
Confidence 478899999999999999999999999999999999999998888776
No 82
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=96.82 E-value=0.00064 Score=66.28 Aligned_cols=48 Identities=19% Similarity=0.208 Sum_probs=43.7
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS 53 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~ 53 (387)
.+|++|++++|++..++...++.+++|+.|+|++|+|+.+++..|.+.
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 322 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGL 322 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCc
Confidence 689999999999999999999999999999999999999999888776
No 83
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=96.81 E-value=0.00067 Score=64.95 Aligned_cols=48 Identities=17% Similarity=0.153 Sum_probs=26.5
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS 53 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~ 53 (387)
++++.|++++|+++.+|+..|+.+++|+.|+|++|+|+.+++..|.+.
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l 92 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYA 92 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCC
Confidence 445555555555555555555555555555555555555555555443
No 84
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=96.80 E-value=0.0005 Score=64.40 Aligned_cols=72 Identities=25% Similarity=0.330 Sum_probs=53.5
Q ss_pred cceeeEEEccCccc--------------------cCCCCCccc--------ccceeEEEecCCcceeeccccccCccccc
Q psy11830 6 NSLLDMKIVRTGLN--------------------HIPQFPVSN--------DLVMEVIFLGYNNIKIIEGRAFNGSQISK 57 (387)
Q Consensus 6 ~~~~~~~~~~~~~~--------------------~~~~~~~~~--------~~~~~~l~l~~n~i~~~~~~~f~~~~~~~ 57 (387)
.+|++|||++|+|. .||+..|.+ +.+|+.++|++ .++.|++.+|.++ .+
T Consensus 49 ~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~--~~ 125 (329)
T 3sb4_A 49 PSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGC--DN 125 (329)
T ss_dssp TTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTC--TT
T ss_pred ccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcC--cc
Confidence 57899999999998 788999999 99999999998 9999999999887 55
Q ss_pred ccccCCCCccc-cCCCCCCCchhh
Q psy11830 58 FVSKIRPEQKL-NPRPSAYNTYYN 80 (387)
Q Consensus 58 ~~~~~~~~~~~-~p~~~~~~~~~~ 80 (387)
++.+..++... .=.+++|..|..
T Consensus 126 L~~l~l~~n~i~~i~~~aF~~~~~ 149 (329)
T 3sb4_A 126 LKICQIRKKTAPNLLPEALADSVT 149 (329)
T ss_dssp CCEEEBCCSSCCEECTTSSCTTTC
T ss_pred cceEEcCCCCccccchhhhcCCCc
Confidence 55554433322 125567766543
No 85
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=96.79 E-value=0.00077 Score=62.14 Aligned_cols=45 Identities=11% Similarity=0.192 Sum_probs=21.1
Q ss_pred ceeeEEEccCccccCCCCCcccccceeEEEecCCcceeecccccc
Q psy11830 7 SLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFN 51 (387)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~ 51 (387)
+|++|++++|++..++...+..+++|+.|+|++|+|+.+++..|.
T Consensus 176 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 220 (306)
T 2z66_A 176 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK 220 (306)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGT
T ss_pred CCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhcc
Confidence 344444444444444444444444444444444444444444443
No 86
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=96.78 E-value=0.00046 Score=69.05 Aligned_cols=48 Identities=19% Similarity=0.245 Sum_probs=29.2
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS 53 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~ 53 (387)
.+|++|++++|+++.++...|+++++|+.|+|++|+|+.+++.+|.++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l 73 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSL 73 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhcccc
Confidence 356666666666666665666666666666666666666666555544
No 87
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=96.78 E-value=0.00026 Score=72.97 Aligned_cols=48 Identities=23% Similarity=0.416 Sum_probs=32.1
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS 53 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~ 53 (387)
.+|++|++++|+++.||+..|.++++|+.|||++|+++.+++..|.+.
T Consensus 536 ~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l 583 (680)
T 1ziw_A 536 SHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQ 583 (680)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCC
Confidence 356666666666666666666666667777777777766666666554
No 88
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=96.77 E-value=0.0012 Score=61.78 Aligned_cols=55 Identities=13% Similarity=0.113 Sum_probs=46.5
Q ss_pred ccceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCccccccccc
Q psy11830 5 ANSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSK 61 (387)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~ 61 (387)
..+|++|++++|+|..++...|+++++|+.|+|++|+|+.+++..|.++ .+++.+
T Consensus 53 ~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L 107 (332)
T 2ft3_A 53 SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPL--RKLQKL 107 (332)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTC--TTCCEE
T ss_pred CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCc--CCCCEE
Confidence 3578999999999999999899999999999999999999988888776 444444
No 89
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=96.76 E-value=0.0004 Score=65.04 Aligned_cols=48 Identities=17% Similarity=0.171 Sum_probs=36.4
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS 53 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~ 53 (387)
.+|++|++++|+++.++...+.++++|+.|+|++|+|+.+++..|...
T Consensus 193 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l 240 (332)
T 2ft3_A 193 ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFL 240 (332)
T ss_dssp SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGC
T ss_pred CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCC
Confidence 467777777777777777777777788888888888887777777554
No 90
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=96.74 E-value=0.00089 Score=68.94 Aligned_cols=48 Identities=15% Similarity=0.145 Sum_probs=34.1
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS 53 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~ 53 (387)
.+|++|++++|++..+|+..|+++.+|+.|+|++|+++.+++..|.++
T Consensus 73 ~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 120 (680)
T 1ziw_A 73 PMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120 (680)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTC
T ss_pred cCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHcccc
Confidence 356777777777777777777777777777777777777777766655
No 91
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=96.74 E-value=0.00046 Score=57.75 Aligned_cols=46 Identities=13% Similarity=-0.034 Sum_probs=39.3
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS 53 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~ 53 (387)
.+|++|++++|+|+.+ ..+..+++|+.|+|++|+|+...+..+..+
T Consensus 49 ~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 94 (168)
T 2ell_A 49 VNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKL 94 (168)
T ss_dssp GGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHC
T ss_pred CCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhC
Confidence 5799999999999999 778899999999999999999655555433
No 92
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=96.74 E-value=0.00089 Score=68.13 Aligned_cols=46 Identities=13% Similarity=0.265 Sum_probs=21.1
Q ss_pred ceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccC
Q psy11830 7 SLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNG 52 (387)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~ 52 (387)
+|++|++++|+|..+|+..|+++++|+.|+|++|.|+.+++..|.+
T Consensus 100 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~ 145 (597)
T 3oja_B 100 TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHN 145 (597)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhcc
Confidence 3444444444444444444444444444444444444444444433
No 93
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=96.73 E-value=0.00075 Score=68.48 Aligned_cols=54 Identities=15% Similarity=0.150 Sum_probs=43.5
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCccccccccc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSK 61 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~ 61 (387)
.+|++|++++|+++.+++..|.++.+|+.|+|++|+|+.+++..|.++ .+++.+
T Consensus 56 ~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l--~~L~~L 109 (606)
T 3vq2_A 56 SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGL--TSLENL 109 (606)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTC--TTCCEE
T ss_pred ccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCc--ccCCEE
Confidence 468888888888888888888888888888888888888888888776 444433
No 94
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=96.70 E-value=0.00085 Score=67.60 Aligned_cols=48 Identities=13% Similarity=0.107 Sum_probs=40.4
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS 53 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~ 53 (387)
.+|++|++++|+|..+|+..|+++++|+.|+|++|+|+.+++.+|.++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 99 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFN 99 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCC
Confidence 578888888888888888888888888888888888888888888775
No 95
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=96.61 E-value=0.0007 Score=67.74 Aligned_cols=71 Identities=13% Similarity=0.019 Sum_probs=55.4
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCcccccccccCCCCcccc--CCCCCCCch
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSKIRPEQKLN--PRPSAYNTY 78 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~~~~~~~~~--p~~~~~~~~ 78 (387)
.+|++|++++|+|+.+++..|+++.+|+.|||++|+++.+++..|.++ .+++.+........ +.++.|...
T Consensus 50 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~~~~~~l 122 (549)
T 2z81_A 50 ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPL--SSLKYLNLMGNPYQTLGVTSLFPNL 122 (549)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTC--TTCCEEECTTCCCSSSCSSCSCTTC
T ss_pred CcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccC--CCCcEEECCCCcccccchhhhhhcc
Confidence 579999999999999999999999999999999999999999989776 55555533332222 344455443
No 96
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=96.56 E-value=0.001 Score=67.40 Aligned_cols=48 Identities=15% Similarity=0.225 Sum_probs=40.1
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS 53 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~ 53 (387)
.+|++|++++|++..+++..|+++.+|+.|+|++|+++.+++..|.++
T Consensus 57 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 104 (606)
T 3t6q_A 57 INLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGP 104 (606)
T ss_dssp TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSC
T ss_pred ccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhccc
Confidence 468888888888888888888888888888888888888888888776
No 97
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=96.51 E-value=0.00092 Score=69.80 Aligned_cols=37 Identities=19% Similarity=0.290 Sum_probs=16.0
Q ss_pred eeeEEEccCccccCCCCCcccccceeEEEecCCcceee
Q psy11830 8 LLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKII 45 (387)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~ 45 (387)
|++|+|++|+|+.||+ .+.++.+|+.|||++|+|+.+
T Consensus 249 L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~l 285 (727)
T 4b8c_D 249 LTRLYLNGNSLTELPA-EIKNLSNLRVLDLSHNRLTSL 285 (727)
T ss_dssp CSCCBCTTSCCSCCCG-GGGGGTTCCEEECTTSCCSSC
T ss_pred CCEEEeeCCcCcccCh-hhhCCCCCCEEeCcCCcCCcc
Confidence 4444444444444432 234444444444444444444
No 98
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=96.39 E-value=0.0022 Score=64.54 Aligned_cols=47 Identities=11% Similarity=0.159 Sum_probs=40.5
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS 53 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~ 53 (387)
.+|++|++++|+|+.||+..+ .+++|+.|||++|+|+.+++..|...
T Consensus 450 ~~L~~L~L~~N~l~~ip~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~l 496 (562)
T 3a79_B 450 PKVKVLDLHNNRIMSIPKDVT-HLQALQELNVASNQLKSVPDGVFDRL 496 (562)
T ss_dssp TTCSEEECCSSCCCCCCTTTT-SSCCCSEEECCSSCCCCCCTTSTTTC
T ss_pred CcCCEEECCCCcCcccChhhc-CCCCCCEEECCCCCCCCCCHHHHhcC
Confidence 578899999999999998888 88899999999999998888877655
No 99
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=96.36 E-value=0.0019 Score=65.69 Aligned_cols=48 Identities=10% Similarity=0.351 Sum_probs=41.3
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS 53 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~ 53 (387)
.+|+.|++++|+|..+|...|+++++|+.|+|++|.|+.+++..|.++
T Consensus 75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 122 (597)
T 3oja_B 75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV 122 (597)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCC
Confidence 468888888888888888888888889999999998888888888766
No 100
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.35 E-value=0.0021 Score=65.09 Aligned_cols=80 Identities=11% Similarity=0.181 Sum_probs=53.7
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCcccccccccCCCCccccCC--CCCCCchhhhHH
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSKIRPEQKLNPR--PSAYNTYYNFTR 83 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~~~~~~~~~p~--~~~~~~~~~~l~ 83 (387)
.+|+.|++++|+|+.+|+ .+.++++|+.|+|++|+|+.+| .|.++ ..++.+...+...+.. |+.+......-.
T Consensus 463 ~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~lp--~l~~l--~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~ 537 (567)
T 1dce_A 463 LLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVD--GVANL--PRLQELLLCNNRLQQSAAIQPLVSCPRLVL 537 (567)
T ss_dssp TTCCEEECCSSCCCCCCG-GGGGCTTCCEEECCSSCCCCCG--GGTTC--SSCCEEECCSSCCCSSSTTGGGGGCTTCCE
T ss_pred ccCcEeecCcccccccch-hhhcCCCCCEEECCCCCCCCCc--ccCCC--CCCcEEECCCCCCCCCCCcHHHhcCCCCCE
Confidence 479999999999999987 7889999999999999999987 56555 4444443333222222 555544333333
Q ss_pred hhhccCe
Q psy11830 84 LIFPGNA 90 (387)
Q Consensus 84 ~~~~gn~ 90 (387)
+.+-||-
T Consensus 538 L~L~~N~ 544 (567)
T 1dce_A 538 LNLQGNS 544 (567)
T ss_dssp EECTTSG
T ss_pred EEecCCc
Confidence 3444553
No 101
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=96.35 E-value=0.0017 Score=59.84 Aligned_cols=40 Identities=15% Similarity=0.096 Sum_probs=20.4
Q ss_pred ceeeEEEccCccccCCCCCcccccceeEEEecCCcceeecc
Q psy11830 7 SLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEG 47 (387)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~ 47 (387)
+|++|++++|++..+|+. +..+++|+.|+|++|+++.+++
T Consensus 79 ~L~~L~Ls~n~i~~l~~~-~~~l~~L~~L~l~~n~l~~~~~ 118 (306)
T 2z66_A 79 SLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSE 118 (306)
T ss_dssp CCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESSTT
T ss_pred ccCEEECCCCccccChhh-cCCCCCCCEEECCCCccccccc
Confidence 455555555555555443 4445555555555555555444
No 102
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=96.32 E-value=0.00065 Score=55.56 Aligned_cols=46 Identities=7% Similarity=-0.005 Sum_probs=36.2
Q ss_pred ccceeeEEEccCccc--cCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830 5 ANSLLDMKIVRTGLN--HIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS 53 (387)
Q Consensus 5 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~ 53 (387)
..+|++|++++|+++ .+|+ .+..+++|+.|+|++|.|+.+ ..|...
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n~l~~~--~~~~~l 63 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEG-LTDEFEELEFLSTINVGLTSI--ANLPKL 63 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCS-CCTTCTTCCEEECTTSCCCCC--TTCCCC
T ss_pred CccCeEEEccCCcCChhHHHH-HHhhcCCCcEEECcCCCCCCc--hhhhcC
Confidence 467888999999988 7775 677888899999999988888 445444
No 103
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=96.31 E-value=0.00072 Score=55.28 Aligned_cols=48 Identities=13% Similarity=0.070 Sum_probs=39.0
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeecc-ccccCc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEG-RAFNGS 53 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~-~~f~~~ 53 (387)
.+|++|++++|+|....+..+..+++|+.|+|++|+|+.++. ..+.+.
T Consensus 64 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l 112 (149)
T 2je0_A 64 NKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKL 112 (149)
T ss_dssp TTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGC
T ss_pred CCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhC
Confidence 478999999999999555677789999999999999998753 556554
No 104
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=96.28 E-value=0.0012 Score=65.55 Aligned_cols=48 Identities=8% Similarity=0.113 Sum_probs=36.6
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS 53 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~ 53 (387)
.+|++|++++|+|+.+++..|+++++|+.|+|++|+|+.+++..|.++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 68 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFN 68 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcc
Confidence 567777777777777777777777777777777777777777777665
No 105
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=96.27 E-value=0.0024 Score=67.73 Aligned_cols=47 Identities=13% Similarity=0.109 Sum_probs=22.5
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCC-cceeeccccccC
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYN-NIKIIEGRAFNG 52 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n-~i~~~~~~~f~~ 52 (387)
.+|++||+++|+|+.+++..|+++.+|+.|+|++| .+..+++.+|.+
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~ 71 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRN 71 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSS
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcC
Confidence 34555666666655555444444444444444444 333344444433
No 106
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=96.26 E-value=0.0025 Score=67.54 Aligned_cols=54 Identities=17% Similarity=0.152 Sum_probs=44.7
Q ss_pred cceeeEEEccC-ccccCCCCCcccccceeEEEecCCcceeeccccccCccccccccc
Q psy11830 6 NSLLDMKIVRT-GLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSK 61 (387)
Q Consensus 6 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~ 61 (387)
.+|++|++++| .+..|++..|+++++|+.|+|++|.|+.+++..|.++ .+++.+
T Consensus 48 ~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l--~~L~~L 102 (844)
T 3j0a_A 48 EQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGL--FHLFEL 102 (844)
T ss_dssp CSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSC--SSCCCE
T ss_pred ccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCC--cccCEe
Confidence 46889999998 6778888889999999999999999999999988876 444444
No 107
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=96.25 E-value=0.0016 Score=60.49 Aligned_cols=45 Identities=13% Similarity=0.210 Sum_probs=31.2
Q ss_pred cceeeEEEccCccccCCCCCc-ccccceeEEEecCCcceeeccccc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPV-SNDLVMEVIFLGYNNIKIIEGRAF 50 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~l~~n~i~~~~~~~f 50 (387)
.+|++|++++|++..++...+ ..+++|+.|+|++|.|+.+++..+
T Consensus 144 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 189 (317)
T 3o53_A 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV 189 (317)
T ss_dssp SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCC
T ss_pred CCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccc
Confidence 467777777777777765554 356777777777777777765544
No 108
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=96.17 E-value=0.0016 Score=68.06 Aligned_cols=68 Identities=9% Similarity=0.103 Sum_probs=49.0
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCcccccccccCCCCccccCCCCCCCc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSKIRPEQKLNPRPSAYNT 77 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~~~~~~~~~p~~~~~~~ 77 (387)
.+|++|+|++|+|..||+..| .+.+|+.|+|++|.|+.+++ .|..+ .+|+.+.......+.-|+.|..
T Consensus 224 ~~L~~L~Ls~n~l~~l~~~~~-~l~~L~~L~Ls~N~l~~lp~-~~~~l--~~L~~L~Ls~N~l~~lp~~~~~ 291 (727)
T 4b8c_D 224 QLWHALDLSNLQIFNISANIF-KYDFLTRLYLNGNSLTELPA-EIKNL--SNLRVLDLSHNRLTSLPAELGS 291 (727)
T ss_dssp CCCCEEECTTSCCSCCCGGGG-GCCSCSCCBCTTSCCSCCCG-GGGGG--TTCCEEECTTSCCSSCCSSGGG
T ss_pred CCCcEEECCCCCCCCCChhhc-CCCCCCEEEeeCCcCcccCh-hhhCC--CCCCEEeCcCCcCCccChhhcC
Confidence 568899999999999998888 88999999999999998874 45554 4455444333333344555544
No 109
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=96.16 E-value=0.0029 Score=59.17 Aligned_cols=47 Identities=11% Similarity=0.203 Sum_probs=37.1
Q ss_pred ccceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830 5 ANSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS 53 (387)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~ 53 (387)
..+|++|++++|+++.+|+. +..+++|+.|+|++|+++.+++. |..+
T Consensus 182 l~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~N~l~~l~~~-l~~l 228 (328)
T 4fcg_A 182 LVNLQSLRLEWTGIRSLPAS-IANLQNLKSLKIRNSPLSALGPA-IHHL 228 (328)
T ss_dssp STTCCEEEEEEECCCCCCGG-GGGCTTCCEEEEESSCCCCCCGG-GGGC
T ss_pred CCCCCEEECcCCCcCcchHh-hcCCCCCCEEEccCCCCCcCchh-hccC
Confidence 35788899999999888865 77888899999999988887763 5443
No 110
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=96.14 E-value=0.0026 Score=59.56 Aligned_cols=40 Identities=15% Similarity=0.264 Sum_probs=18.9
Q ss_pred ceeeEEEcc-CccccCCCCC--------cccccceeEEEecCCcceeec
Q psy11830 7 SLLDMKIVR-TGLNHIPQFP--------VSNDLVMEVIFLGYNNIKIIE 46 (387)
Q Consensus 7 ~~~~~~~~~-~~~~~~~~~~--------~~~~~~~~~l~l~~n~i~~~~ 46 (387)
+|++|++++ |.+..+|+.. |.++++|+.|+|++|+|+.++
T Consensus 151 ~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp 199 (328)
T 4fcg_A 151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLP 199 (328)
T ss_dssp TCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCC
T ss_pred CCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcch
Confidence 455555555 2334444332 223555555555555555444
No 111
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=96.08 E-value=0.0031 Score=62.60 Aligned_cols=47 Identities=13% Similarity=0.200 Sum_probs=38.8
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS 53 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~ 53 (387)
.+|++|++++|+|+.+|+..+ .+++|+.|+|++|+|+.+++..|...
T Consensus 421 ~~L~~L~Ls~N~l~~ip~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~l 467 (520)
T 2z7x_B 421 PRIKVLDLHSNKIKSIPKQVV-KLEALQELNVASNQLKSVPDGIFDRL 467 (520)
T ss_dssp TTCCEEECCSSCCCCCCGGGG-GCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred ccCCEEECCCCcccccchhhh-cCCCCCEEECCCCcCCccCHHHhccC
Confidence 578888888888888888777 88888888888888888888767555
No 112
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=95.89 E-value=0.0043 Score=57.43 Aligned_cols=44 Identities=9% Similarity=0.115 Sum_probs=22.2
Q ss_pred ceeeEEEccCccccCC-CCCcccccceeEEEecCCcceeeccccc
Q psy11830 7 SLLDMKIVRTGLNHIP-QFPVSNDLVMEVIFLGYNNIKIIEGRAF 50 (387)
Q Consensus 7 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~l~~n~i~~~~~~~f 50 (387)
+|++|++++|++...+ ...+..+++|+.|+|++|+|+.+++..+
T Consensus 229 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~ 273 (312)
T 1wwl_A 229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP 273 (312)
T ss_dssp CCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC
T ss_pred CCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc
Confidence 4555555555555543 2344445555555555555555544443
No 113
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=95.87 E-value=0.0068 Score=63.52 Aligned_cols=48 Identities=13% Similarity=0.042 Sum_probs=27.4
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS 53 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~ 53 (387)
.+|+.||+++|++....+..++++++|+.|||++|++++..+..|.++
T Consensus 632 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L 679 (768)
T 3rgz_A 632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDL 679 (768)
T ss_dssp BCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred ccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCC
Confidence 455666666666664444555566666666666666665555555443
No 114
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=95.86 E-value=0.0027 Score=58.89 Aligned_cols=48 Identities=8% Similarity=-0.070 Sum_probs=28.2
Q ss_pred cceeeEEEcc-CccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830 6 NSLLDMKIVR-TGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS 53 (387)
Q Consensus 6 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~ 53 (387)
.+|++|++++ |++.......|.++++|+.|+|++|+|+...+..|..+
T Consensus 76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l 124 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI 124 (313)
T ss_dssp TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGC
T ss_pred CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCC
Confidence 3566666663 66664444455666666666666666665555555444
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=95.86 E-value=0.003 Score=57.12 Aligned_cols=39 Identities=15% Similarity=0.158 Sum_probs=33.8
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeec
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIE 46 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~ 46 (387)
.+|++|++++|+|..+| .++.+++|+.|+|++|+|+.++
T Consensus 106 ~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~Ls~N~i~~~~ 144 (263)
T 1xeu_A 106 ACLSRLFLDNNELRDTD--SLIHLKNLEILSIRNNKLKSIV 144 (263)
T ss_dssp SSCCEEECCSSCCSBSG--GGTTCTTCCEEECTTSCCCBCG
T ss_pred CcccEEEccCCccCCCh--hhcCcccccEEECCCCcCCCCh
Confidence 57888999999999986 4788899999999999999886
No 116
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.80 E-value=0.0036 Score=56.94 Aligned_cols=41 Identities=17% Similarity=0.224 Sum_probs=36.5
Q ss_pred ceeeEEEccCccccCCC--CCcccccceeEEEecCCcceeecc
Q psy11830 7 SLLDMKIVRTGLNHIPQ--FPVSNDLVMEVIFLGYNNIKIIEG 47 (387)
Q Consensus 7 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~l~~n~i~~~~~ 47 (387)
+|..|+|++|+|..++. ..++.+++|+.|+|++|+|+.+++
T Consensus 171 ~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~ 213 (267)
T 3rw6_A 171 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERE 213 (267)
T ss_dssp TCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGG
T ss_pred CCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchh
Confidence 79999999999999985 566789999999999999998843
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=95.77 E-value=0.0074 Score=54.51 Aligned_cols=44 Identities=7% Similarity=0.081 Sum_probs=33.7
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS 53 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~ 53 (387)
.+|++|++++|+|+.+| .++.+++|+.|+|++|+|+.+++ |.++
T Consensus 41 ~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l 84 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDL 84 (263)
T ss_dssp TTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTC
T ss_pred CcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccC
Confidence 46778888888888887 46777888888888888888776 5444
No 118
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.74 E-value=0.0069 Score=48.66 Aligned_cols=40 Identities=13% Similarity=0.204 Sum_probs=36.9
Q ss_pred cccceeeEEEccCccccCCCCCcccccceeEEEecCCcce
Q psy11830 4 YANSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIK 43 (387)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~ 43 (387)
+..+|++|+|++|+|+.||+..|..+.+|+.|+|++|.+.
T Consensus 29 lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 29 FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4568999999999999999999999999999999999764
No 119
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=95.71 E-value=0.0041 Score=57.12 Aligned_cols=44 Identities=18% Similarity=0.148 Sum_probs=34.2
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS 53 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~ 53 (387)
.+|++|++++|++..+ ..++.+++|+.|+|++|+|+.+++ +..+
T Consensus 134 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l 177 (291)
T 1h6t_A 134 PQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGL 177 (291)
T ss_dssp TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTC
T ss_pred CCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCC
Confidence 4688888888888888 367788888888888888888876 5444
No 120
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=95.66 E-value=0.0075 Score=55.90 Aligned_cols=46 Identities=7% Similarity=0.092 Sum_probs=34.8
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeecccccc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFN 51 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~ 51 (387)
.+|++|++++|+++.+++..|..+++|+.|+|++|.|+.+++..+.
T Consensus 120 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 165 (317)
T 3o53_A 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA 165 (317)
T ss_dssp SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGG
T ss_pred CCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHh
Confidence 3577777777777777777777778888888888888877766663
No 121
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=95.63 E-value=0.0055 Score=52.59 Aligned_cols=46 Identities=13% Similarity=0.127 Sum_probs=30.3
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS 53 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~ 53 (387)
.+|++|++++|++..++ .++.+++|+.|+|++|+++...+..|.++
T Consensus 66 ~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l 111 (197)
T 4ezg_A 66 HNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGL 111 (197)
T ss_dssp TTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTC
T ss_pred CCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccChhhcCC
Confidence 45677777777666664 45666777777777777776555556554
No 122
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=95.63 E-value=0.0052 Score=56.84 Aligned_cols=44 Identities=7% Similarity=0.068 Sum_probs=31.6
Q ss_pred cceeeEEEccCccc-cCCCCCc-ccccceeEEEecCCcceeeccccc
Q psy11830 6 NSLLDMKIVRTGLN-HIPQFPV-SNDLVMEVIFLGYNNIKIIEGRAF 50 (387)
Q Consensus 6 ~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~l~l~~n~i~~~~~~~f 50 (387)
.+|++|++++|+++ .+|+..| ..+++|+.|+|++|+|+.+ +..|
T Consensus 95 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~ 140 (312)
T 1wwl_A 95 SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWL 140 (312)
T ss_dssp SCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHH
T ss_pred CCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHH
Confidence 56778888888887 4666554 7777888888888888777 4444
No 123
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=95.61 E-value=0.0046 Score=57.35 Aligned_cols=47 Identities=17% Similarity=0.202 Sum_probs=35.4
Q ss_pred cceeeEEEccCcccc---CCCCCcccccceeEEEecC-CcceeeccccccCc
Q psy11830 6 NSLLDMKIVRTGLNH---IPQFPVSNDLVMEVIFLGY-NNIKIIEGRAFNGS 53 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~l~~-n~i~~~~~~~f~~~ 53 (387)
.++++|++++|++.. +| ..+.++++|+.|+|++ |.++...+..|..+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~-~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l 100 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIP-SSLANLPYLNFLYIGGINNLVGPIPPAIAKL 100 (313)
T ss_dssp CCEEEEEEECCCCSSCEECC-GGGGGCTTCSEEEEEEETTEESCCCGGGGGC
T ss_pred ceEEEEECCCCCccCCcccC-hhHhCCCCCCeeeCCCCCcccccCChhHhcC
Confidence 468888888888884 54 4677888888888884 88887767777554
No 124
>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens}
Probab=95.49 E-value=0.041 Score=49.92 Aligned_cols=44 Identities=34% Similarity=0.431 Sum_probs=36.5
Q ss_pred hhhccCeeEEEeeeccCCCCCcchhhhhhhhHHHHHHHHHHHHH
Q psy11830 84 LIFPGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLL 127 (387)
Q Consensus 84 ~~~~gn~~~~~~~~~~~~~~~~~~~~~~~l~~ad~~~~~~~~ii 127 (387)
+++.||.+++....++++.++....++.|||+||++.++.+...
T Consensus 24 ~gv~gN~lvi~vi~~~~~lrt~~n~~i~nLAvaDll~~l~~p~~ 67 (296)
T 2lnl_A 24 LSLLGNSLVMLVILYSRVGRSVTDVYLLNLALADLLFALTLPIW 67 (296)
T ss_dssp HHHHHHHHHHHHHHHCTTCCSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHhhhHH
Confidence 36899999998877777778888999999999999988765443
No 125
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=95.45 E-value=0.0044 Score=63.55 Aligned_cols=47 Identities=13% Similarity=0.153 Sum_probs=34.8
Q ss_pred ceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830 7 SLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS 53 (387)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~ 53 (387)
+|++|++++|+++.+|+..|..+++|+.|+|++|+|+.+++..|.+.
T Consensus 434 ~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~ 480 (636)
T 4eco_A 434 NVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDE 480 (636)
T ss_dssp CEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEET
T ss_pred CCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccc
Confidence 67777777777777777777777777777777777777777776543
No 126
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=95.40 E-value=0.006 Score=56.46 Aligned_cols=39 Identities=8% Similarity=0.131 Sum_probs=21.8
Q ss_pred ceeeEEEccCccccCCCCCcccccceeEEEecCCcceeecc
Q psy11830 7 SLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEG 47 (387)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~ 47 (387)
+|++|++++|++..+|. +..+++|+.|+|++|+++.+++
T Consensus 130 ~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~ 168 (308)
T 1h6u_A 130 NLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP 168 (308)
T ss_dssp TCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG
T ss_pred CCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh
Confidence 45555555555555554 5555555555555555555544
No 127
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=95.40 E-value=0.0058 Score=60.50 Aligned_cols=45 Identities=13% Similarity=0.210 Sum_probs=33.8
Q ss_pred cceeeEEEccCccccCCCCCcc-cccceeEEEecCCcceeeccccc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVS-NDLVMEVIFLGYNNIKIIEGRAF 50 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~l~~n~i~~~~~~~f 50 (387)
.+|..|++++|++..++...+. .+++|+.|+|++|.|+.+++..+
T Consensus 144 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~ 189 (487)
T 3oja_A 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV 189 (487)
T ss_dssp SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCC
T ss_pred CCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccccccc
Confidence 4688888888888886655554 67888888888888888866554
No 128
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=95.28 E-value=0.01 Score=54.81 Aligned_cols=46 Identities=4% Similarity=0.033 Sum_probs=35.8
Q ss_pred cceeeEEEccCccccCCCCCcccc---cceeEEEecCCcceeecccccc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSND---LVMEVIFLGYNNIKIIEGRAFN 51 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~l~~n~i~~~~~~~f~ 51 (387)
.+|++|++++|+|..+.+..+..+ ++|+.|+|++|+|+.+++..+.
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~ 272 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLPA 272 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCCS
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhcC
Confidence 578999999999999833333343 6999999999999998877663
No 129
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.28 E-value=0.017 Score=54.71 Aligned_cols=73 Identities=16% Similarity=0.268 Sum_probs=43.1
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCcccccccccCCCCccccC-CCCCCCchhhhH
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSKIRPEQKLNP-RPSAYNTYYNFT 82 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~l 82 (387)
.+|..+++. ++++.|++..|.++.+|+.++|.+|.++.|++.+|.+. .+|+....|+- ... +..+|..|..+-
T Consensus 263 ~~l~~i~l~-~~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c--~~L~~i~lp~~-l~~I~~~aF~~C~~L~ 336 (379)
T 4h09_A 263 TALKTLNFY-AKVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDC--VKLSSVTLPTA-LKTIQVYAFKNCKALS 336 (379)
T ss_dssp TTCCEEEEC-CCCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTC--TTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred ehhcccccc-ccceeccccccccccccccccccccccceehhhhhcCC--CCCCEEEcCcc-ccEEHHHHhhCCCCCC
Confidence 356666663 45777777777777777777777777777777777775 33433322221 111 445565554443
No 130
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=95.25 E-value=0.0071 Score=55.93 Aligned_cols=40 Identities=8% Similarity=0.187 Sum_probs=25.9
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeecc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEG 47 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~ 47 (387)
.+|++|++++|+++.+| .+..+++|+.|+|++|+|+.+++
T Consensus 85 ~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~l~~n~l~~~~~ 124 (308)
T 1h6u_A 85 TKITELELSGNPLKNVS--AIAGLQSIKTLDLTSTQITDVTP 124 (308)
T ss_dssp CSCCEEECCSCCCSCCG--GGTTCTTCCEEECTTSCCCCCGG
T ss_pred CCCCEEEccCCcCCCch--hhcCCCCCCEEECCCCCCCCchh
Confidence 35666777777776665 35666666666666666666654
No 131
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=95.24 E-value=0.011 Score=58.60 Aligned_cols=46 Identities=11% Similarity=0.092 Sum_probs=41.0
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS 53 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~ 53 (387)
.+|++|++++|+|..+|...|+.+++|+.|+|++|.|+.+.+ |.++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l 79 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESL 79 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccC
Confidence 379999999999999999999999999999999999998776 5554
No 132
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=95.24 E-value=0.014 Score=49.88 Aligned_cols=39 Identities=8% Similarity=0.099 Sum_probs=32.8
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeec
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIE 46 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~ 46 (387)
.+|++|++++|+|..+| .+..+++|+.|+|++|.++.++
T Consensus 44 ~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~~~ 82 (197)
T 4ezg_A 44 NSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATNYN 82 (197)
T ss_dssp HTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSCCG
T ss_pred CCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCcch
Confidence 46888999999999888 4778889999999999887765
No 133
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=95.18 E-value=0.011 Score=60.46 Aligned_cols=42 Identities=17% Similarity=0.358 Sum_probs=21.4
Q ss_pred ceeeEEEccCccccCCCCCccccc-------ceeEEEecCCcceeeccc
Q psy11830 7 SLLDMKIVRTGLNHIPQFPVSNDL-------VMEVIFLGYNNIKIIEGR 48 (387)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~l~~n~i~~~~~~ 48 (387)
+|++|++++|+|..+|+..|..+. +|+.|+|++|+|+.+++.
T Consensus 458 ~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~ 506 (636)
T 4eco_A 458 PLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDD 506 (636)
T ss_dssp CCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGG
T ss_pred CCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChh
Confidence 455555555555555555544332 555555555555554443
No 134
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=95.15 E-value=0.0078 Score=63.98 Aligned_cols=51 Identities=14% Similarity=0.191 Sum_probs=37.9
Q ss_pred ceeeEEEccCccccCCC-CCcccccceeEEEecCCcceeeccccccCccccccccc
Q psy11830 7 SLLDMKIVRTGLNHIPQ-FPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSK 61 (387)
Q Consensus 7 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~ 61 (387)
+|++|++++|++..||+ ..++++++|+.|+|++|+|+.++ .|..+ .+++.+
T Consensus 549 ~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp--~~~~L--~~L~~L 600 (876)
T 4ecn_A 549 KIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE--AFGTN--VKLTDL 600 (876)
T ss_dssp TCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC--CCCTT--SEESEE
T ss_pred CccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch--hhcCC--CcceEE
Confidence 68888888888888876 56778888888888888888777 56554 444444
No 135
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=95.10 E-value=0.0092 Score=54.73 Aligned_cols=39 Identities=23% Similarity=0.394 Sum_probs=33.4
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeec
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIE 46 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~ 46 (387)
.+|++|++++|+|..++ .+..+++|+.|+|++|+|+.++
T Consensus 112 ~~L~~L~L~~n~i~~~~--~l~~l~~L~~L~l~~n~l~~~~ 150 (291)
T 1h6t_A 112 KKLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITDIT 150 (291)
T ss_dssp TTCCEEECTTSCCCCCG--GGGGCTTCCEEECCSSCCCCCG
T ss_pred CCCCEEECCCCcCCCCh--hhcCCCCCCEEEccCCcCCcch
Confidence 57889999999999885 4778899999999999999883
No 136
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=95.08 E-value=0.018 Score=53.09 Aligned_cols=38 Identities=13% Similarity=-0.104 Sum_probs=24.1
Q ss_pred ceeeEEEccCccccCCCCCcccccceeEEEecCCccee
Q psy11830 7 SLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKI 44 (387)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~ 44 (387)
+|++|++++|++..+|...|+.+++|+.|||++|++..
T Consensus 146 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 183 (310)
T 4glp_A 146 GLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLG 183 (310)
T ss_dssp CCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCH
T ss_pred CCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCcc
Confidence 56666666666666666666666666666666666544
No 137
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=95.07 E-value=0.015 Score=56.07 Aligned_cols=47 Identities=11% Similarity=0.147 Sum_probs=33.0
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcce-----eeccccccCc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIK-----IIEGRAFNGS 53 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~-----~~~~~~f~~~ 53 (387)
.+|+.+++ +|+++.|++..|.++.+|+.++|.+|.++ .|++.+|.++
T Consensus 248 ~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c 299 (401)
T 4fdw_A 248 SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGC 299 (401)
T ss_dssp CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTC
T ss_pred CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCC
Confidence 35666666 56677777777777777777777776665 6777777766
No 138
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=94.97 E-value=0.011 Score=56.96 Aligned_cols=80 Identities=15% Similarity=0.199 Sum_probs=58.3
Q ss_pred cceeeEEEccCccc-----cCCCCCcccccceeEEEecCCcceeeccccccCcccccccccCCCCccccCCCCCCCchhh
Q psy11830 6 NSLLDMKIVRTGLN-----HIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSKIRPEQKLNPRPSAYNTYYN 80 (387)
Q Consensus 6 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 80 (387)
.+|+++++.+|.+. .|++..|.++.+|+.++|. |.++.|++.+|.++ .+++.+..++.--.=+.++|..| .
T Consensus 271 ~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c--~~L~~l~lp~~l~~I~~~aF~~~-~ 346 (401)
T 4fdw_A 271 PELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGN--RKVTQLTIPANVTQINFSAFNNT-G 346 (401)
T ss_dssp TTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTC--CSCCEEEECTTCCEECTTSSSSS-C
T ss_pred CCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCC--CCccEEEECccccEEcHHhCCCC-C
Confidence 57999999988877 8999999999999999999 56999999999986 44444433322111156788877 5
Q ss_pred hHHhhhccC
Q psy11830 81 FTRLIFPGN 89 (387)
Q Consensus 81 ~l~~~~~gn 89 (387)
+-.+.+-||
T Consensus 347 L~~l~l~~n 355 (401)
T 4fdw_A 347 IKEVKVEGT 355 (401)
T ss_dssp CCEEEECCS
T ss_pred CCEEEEcCC
Confidence 444444444
No 139
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=94.96 E-value=0.01 Score=55.46 Aligned_cols=37 Identities=22% Similarity=0.349 Sum_probs=19.3
Q ss_pred ceeeEEEccCccccCCCCCcccccceeEEEecCCcceee
Q psy11830 7 SLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKII 45 (387)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~ 45 (387)
+|++|++++|+++.+|. +..+++|+.|+|++|.++.+
T Consensus 67 ~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~ 103 (347)
T 4fmz_A 67 NLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI 103 (347)
T ss_dssp TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC
T ss_pred CccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc
Confidence 45555555555555544 44555555555555555554
No 140
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=94.85 E-value=0.017 Score=58.75 Aligned_cols=40 Identities=18% Similarity=0.111 Sum_probs=26.8
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeecc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEG 47 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~ 47 (387)
.+|+.|++++|+|..+ ..++.+++|+.|+|++|+|+.+++
T Consensus 131 ~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~ 170 (605)
T 1m9s_A 131 PQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 170 (605)
T ss_dssp TTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG
T ss_pred CccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh
Confidence 3566777777777766 345666677777777777766655
No 141
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=94.84 E-value=0.013 Score=61.24 Aligned_cols=94 Identities=13% Similarity=0.109 Sum_probs=62.4
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCcccccccccCCCCcc---ccCCCCCCCchhhhH
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSKIRPEQK---LNPRPSAYNTYYNFT 82 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~~~~~~~---~~p~~~~~~~~~~~l 82 (387)
.+|++|++++|++....+..++++++|+.|||++|++++..+..|.++ ..++.+...... .-|+..+|.. +-
T Consensus 656 ~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l--~~L~~L~ls~N~l~g~iP~~~~~~~---~~ 730 (768)
T 3rgz_A 656 PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL--TMLTEIDLSNNNLSGPIPEMGQFET---FP 730 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGC--CCCSEEECCSSEEEEECCSSSSGGG---SC
T ss_pred ccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCC--CCCCEEECcCCcccccCCCchhhcc---CC
Confidence 468999999999997667889999999999999999999999998776 444444322221 2233333322 22
Q ss_pred HhhhccCeeEEEeeeccCCCCC
Q psy11830 83 RLIFPGNAAVLAVTLSRTSEKS 104 (387)
Q Consensus 83 ~~~~~gn~~~~~~~~~~~~~~~ 104 (387)
...+.||.-.+-..+..|++..
T Consensus 731 ~~~~~gN~~Lcg~~l~~C~~~~ 752 (768)
T 3rgz_A 731 PAKFLNNPGLCGYPLPRCDPSN 752 (768)
T ss_dssp GGGGCSCTEEESTTSCCCCSCC
T ss_pred HHHhcCCchhcCCCCcCCCCCc
Confidence 2357788765533233455444
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=94.83 E-value=0.0053 Score=52.74 Aligned_cols=40 Identities=23% Similarity=0.319 Sum_probs=30.2
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeecc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEG 47 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~ 47 (387)
.+|++|++++|++..+| .+.++++|+.|+|++|+|+.+++
T Consensus 48 ~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l~~ 87 (198)
T 1ds9_A 48 KACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIEN 87 (198)
T ss_dssp TTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSCSS
T ss_pred CCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccccc
Confidence 36777888888888877 67777788888888887776654
No 143
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=94.82 E-value=0.0078 Score=63.98 Aligned_cols=47 Identities=11% Similarity=0.152 Sum_probs=35.8
Q ss_pred ceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830 7 SLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS 53 (387)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~ 53 (387)
+|++|++++|++..+|+..+..+++|+.|+|++|+|+.+++..|...
T Consensus 674 ~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~ 720 (876)
T 4ecn_A 674 NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPK 720 (876)
T ss_dssp CEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCT
T ss_pred CcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccc
Confidence 67777777777777777777777778888888888887777777643
No 144
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=94.69 E-value=0.014 Score=54.54 Aligned_cols=44 Identities=18% Similarity=0.228 Sum_probs=38.5
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS 53 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~ 53 (387)
.+|++|++++|+++.+| .+..+++|+.|+|++|+++.+++ +...
T Consensus 88 ~~L~~L~L~~n~i~~~~--~~~~l~~L~~L~l~~n~i~~~~~--~~~l 131 (347)
T 4fmz_A 88 VKLTNLYIGTNKITDIS--ALQNLTNLRELYLNEDNISDISP--LANL 131 (347)
T ss_dssp TTCCEEECCSSCCCCCG--GGTTCTTCSEEECTTSCCCCCGG--GTTC
T ss_pred CcCCEEEccCCcccCch--HHcCCCcCCEEECcCCcccCchh--hccC
Confidence 57999999999999987 48899999999999999999887 5444
No 145
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=94.46 E-value=0.017 Score=58.47 Aligned_cols=37 Identities=16% Similarity=0.219 Sum_probs=23.9
Q ss_pred ceeeEEEccCccccCCCCCcccccceeEEEecCCcceeecc
Q psy11830 7 SLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEG 47 (387)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~ 47 (387)
+|..|++++|+|+.||+ .+++|+.|+|++|+|+.+++
T Consensus 141 ~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~ 177 (571)
T 3cvr_A 141 LLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE 177 (571)
T ss_dssp TCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC
T ss_pred cccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch
Confidence 46666666666666665 35566777777777766666
No 146
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=94.30 E-value=0.003 Score=54.35 Aligned_cols=40 Identities=18% Similarity=0.268 Sum_probs=30.2
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeec
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIE 46 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~ 46 (387)
.+|+.|++++|+|..+|+ .+..+++|+.|+|++|+|+.++
T Consensus 70 ~~L~~L~l~~n~l~~l~~-~~~~~~~L~~L~L~~N~l~~l~ 109 (198)
T 1ds9_A 70 ENLRILSLGRNLIKKIEN-LDAVADTLEELWISYNQIASLS 109 (198)
T ss_dssp TTCCEEEEEEEEECSCSS-HHHHHHHCSEEEEEEEECCCHH
T ss_pred CCCCEEECCCCCcccccc-hhhcCCcCCEEECcCCcCCcCC
Confidence 467788888888888864 4556677888888888888775
No 147
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=94.28 E-value=0.02 Score=58.55 Aligned_cols=17 Identities=6% Similarity=0.124 Sum_probs=9.1
Q ss_pred cceeEEEecCCcceeec
Q psy11830 30 LVMEVIFLGYNNIKIIE 46 (387)
Q Consensus 30 ~~~~~l~l~~n~i~~~~ 46 (387)
++|+.|+|++|.|+.++
T Consensus 221 ~~L~~L~Ls~N~L~~lp 237 (622)
T 3g06_A 221 SGLKELIVSGNRLTSLP 237 (622)
T ss_dssp TTCCEEECCSSCCSCCC
T ss_pred CCCCEEEccCCccCcCC
Confidence 44555555555555544
No 148
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=94.18 E-value=0.039 Score=52.24 Aligned_cols=53 Identities=11% Similarity=0.159 Sum_probs=39.5
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCccccccccc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSK 61 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~ 61 (387)
.+|+++++.+++++.|++..|.++.+|+.++|.+ .++.|++.+|.+. ..|+..
T Consensus 286 ~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~-~l~~I~~~aF~~C--~~L~~i 338 (379)
T 4h09_A 286 SNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT-ALKTIQVYAFKNC--KALSTI 338 (379)
T ss_dssp TTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTC--TTCCCC
T ss_pred cccccccccccccceehhhhhcCCCCCCEEEcCc-cccEEHHHHhhCC--CCCCEE
Confidence 5677888887788888888888888888888864 4788888888776 444444
No 149
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=94.18 E-value=0.018 Score=56.38 Aligned_cols=40 Identities=23% Similarity=0.262 Sum_probs=24.2
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeecc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEG 47 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~ 47 (387)
.+|++|++++|+++.+|+ +.++++|+.|+|++|+++.+++
T Consensus 68 ~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~ 107 (466)
T 1o6v_A 68 NNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP 107 (466)
T ss_dssp TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG
T ss_pred cCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh
Confidence 455666666666666654 5566666666666666665554
No 150
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=94.05 E-value=0.038 Score=55.85 Aligned_cols=38 Identities=16% Similarity=0.270 Sum_probs=26.3
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeecc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEG 47 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~ 47 (387)
.+|.+|++++|+|+.+|+ +. .+|+.|+|++|+|+.+++
T Consensus 160 ~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~lp~ 197 (571)
T 3cvr_A 160 TSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLESLPA 197 (571)
T ss_dssp TTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSSCCC
T ss_pred CCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCchhh
Confidence 466777777777777776 43 667777777777776666
No 151
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=93.97 E-value=0.021 Score=58.20 Aligned_cols=38 Identities=13% Similarity=0.106 Sum_probs=21.9
Q ss_pred ceeeEEEccCccccCCCCCcccccceeEEEecCCcceeec
Q psy11830 7 SLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIE 46 (387)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~ 46 (387)
+|++|++++|+|..+| .+..+++|+.|+|++|+|+.++
T Consensus 88 ~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l~ 125 (605)
T 1m9s_A 88 NLGWLFLDENKIKDLS--SLKDLKKLKSLSLEHNGISDIN 125 (605)
T ss_dssp TCCEEECCSSCCCCCT--TSTTCTTCCEEECTTSCCCCCG
T ss_pred CCCEEECcCCCCCCCh--hhccCCCCCEEEecCCCCCCCc
Confidence 4566666666666655 3455555666666665555543
No 152
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=93.77 E-value=0.026 Score=53.96 Aligned_cols=46 Identities=20% Similarity=0.321 Sum_probs=28.4
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS 53 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~ 53 (387)
.+|.++++ +++++.|++..|.++.+|+.++|.+ .++.|.+.+|.+.
T Consensus 288 ~~L~~i~l-~~~i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~C 333 (394)
T 4gt6_A 288 PALQDIEF-SSRITELPESVFAGCISLKSIDIPE-GITQILDDAFAGC 333 (394)
T ss_dssp TTCCEEEC-CTTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTC
T ss_pred cccccccC-CCcccccCceeecCCCCcCEEEeCC-cccEehHhHhhCC
Confidence 34555555 3556666666666666666666654 3666666666665
No 153
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=93.36 E-value=0.044 Score=53.64 Aligned_cols=39 Identities=10% Similarity=0.206 Sum_probs=24.5
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeec
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIE 46 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~ 46 (387)
.+|++|++++|+++.+| .+..+++|+.|+|++|+|+.++
T Consensus 42 ~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~~~ 80 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDMT--GIEKLTGLTKLICTSNNITTLD 80 (457)
T ss_dssp TTCCEEECCSSCCCCCT--TGGGCTTCSEEECCSSCCSCCC
T ss_pred CCCCEEEccCCCcccCh--hhcccCCCCEEEccCCcCCeEc
Confidence 35666666666666665 3556666666666666666654
No 154
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=93.22 E-value=0.072 Score=54.37 Aligned_cols=38 Identities=11% Similarity=0.146 Sum_probs=20.6
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeecc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEG 47 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~ 47 (387)
.+|++|++++|+|+.||. .+++|+.|+|++|+|+.+++
T Consensus 61 ~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~ 98 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPV 98 (622)
T ss_dssp TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSCCCC
T ss_pred CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCcCCC
Confidence 345555555555555554 34455555555555555544
No 155
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=93.13 E-value=0.047 Score=53.43 Aligned_cols=40 Identities=18% Similarity=0.308 Sum_probs=29.9
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeecc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEG 47 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~ 47 (387)
.+|++|++++|+++.+| .|+++++|+.|+|++|+++.+++
T Consensus 131 ~~L~~L~L~~n~l~~lp--~~~~l~~L~~L~l~~N~l~~lp~ 170 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLP--ELQNSSFLKIIDVDNNSLKKLPD 170 (454)
T ss_dssp TTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSCCCC
T ss_pred CCCCEEECcCCCCCCCc--ccCCCCCCCEEECCCCcCcccCC
Confidence 46777777777777777 37777788888888887777654
No 156
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=93.11 E-value=0.05 Score=53.26 Aligned_cols=41 Identities=12% Similarity=0.066 Sum_probs=19.6
Q ss_pred ceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccc
Q psy11830 7 SLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAF 50 (387)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f 50 (387)
+|++|++++|+++.+| +..+++|+.|+|++|+++.++...+
T Consensus 213 ~L~~L~Ls~N~l~~ip---~~~l~~L~~L~l~~N~l~~~~~~~l 253 (457)
T 3bz5_A 213 QLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLTELDVSTL 253 (457)
T ss_dssp TCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCCCTTC
T ss_pred CCCEEECcCCcccccC---ccccCCCCEEEeeCCcCCCcCHHHC
Confidence 3444445555554444 4444445555555555554444333
No 157
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=93.11 E-value=0.044 Score=53.56 Aligned_cols=44 Identities=16% Similarity=0.171 Sum_probs=39.4
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS 53 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~ 53 (387)
.++++|++.+++++.+|. +..+++|+.|+|++|+++.+++ |.++
T Consensus 46 ~~l~~L~l~~~~i~~l~~--~~~l~~L~~L~Ls~n~l~~~~~--~~~l 89 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLTDITP--LKNL 89 (466)
T ss_dssp HTCCEEECCSSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG--GTTC
T ss_pred ccccEEecCCCCCccCcc--hhhhcCCCEEECCCCccCCchh--hhcc
Confidence 578999999999999985 7889999999999999999987 6555
No 158
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=93.05 E-value=0.073 Score=50.77 Aligned_cols=71 Identities=21% Similarity=0.296 Sum_probs=48.1
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCcccccccccCCCCccccC-CCCCCCchhhh
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGSQISKFVSKIRPEQKLNP-RPSAYNTYYNF 81 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~ 81 (387)
.+|.++++.+ +++.|++..|.++.+|+.++|.+ .++.|++.+|.+. ..|+....|.- ... +.++|..|..+
T Consensus 297 ~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c--~~L~~i~lp~~-l~~I~~~aF~~C~~L 368 (394)
T 4fs7_A 297 SSLTEVKLLD-SVKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGC--TSLSNINFPLS-LRKIGANAFQGCINL 368 (394)
T ss_dssp TTCCEEEECT-TCCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTC--TTCCEECCCTT-CCEECTTTBTTCTTC
T ss_pred cccccccccc-ccceechhhhcCCCCCCEEEeCC-cccEEhHHhccCC--CCCCEEEECcc-ccEehHHHhhCCCCC
Confidence 5677888754 48888888888888888888864 4888888888886 44444433321 111 55667766543
No 159
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=92.52 E-value=0.11 Score=49.66 Aligned_cols=46 Identities=24% Similarity=0.411 Sum_probs=35.3
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS 53 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~ 53 (387)
.+|+++++. ++++.|++..|.++.+|+.++|.+| ++.|++.+|.+.
T Consensus 71 ~~L~~i~lp-~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c 116 (394)
T 4fs7_A 71 RKVTEIKIP-STVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGC 116 (394)
T ss_dssp TTEEEEECC-TTCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTC
T ss_pred CCceEEEeC-CCccCcchhHhhCCCCCcEEEeCCC-ceEccchhhccc
Confidence 467778775 4588888888888888888888644 788888888776
No 160
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=92.21 E-value=0.072 Score=52.06 Aligned_cols=40 Identities=20% Similarity=0.242 Sum_probs=29.2
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeecc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEG 47 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~ 47 (387)
.+|++|++++|+++.+|+ +..+++|+.|+|++|+++.+++
T Consensus 215 ~~L~~L~l~~n~l~~lp~--~~~l~~L~~L~l~~N~l~~l~~ 254 (454)
T 1jl5_A 215 LSLESIVAGNNILEELPE--LQNLPFLTTIYADNNLLKTLPD 254 (454)
T ss_dssp TTCCEEECCSSCCSSCCC--CTTCTTCCEEECCSSCCSSCCS
T ss_pred CcccEEECcCCcCCcccc--cCCCCCCCEEECCCCcCCcccc
Confidence 367777777777777774 6777777777777777777664
No 161
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A*
Probab=91.88 E-value=0.03 Score=55.68 Aligned_cols=63 Identities=17% Similarity=0.152 Sum_probs=46.4
Q ss_pred hhccCeeEEEeeeccCCCCCcchhhhhhhhHHHHHHHHHHHHHhhccccccchhhchhhhhhhcc
Q psy11830 85 IFPGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAVKDLQSTEVYFNYAYDWQKGN 149 (387)
Q Consensus 85 ~~~gn~~~~~~~~~~~~~~~~~~~~~~~l~~ad~~~~~~~~ii~~~~~~~~~~Y~~~a~~w~~gN 149 (387)
++.||.+|++...+.++.++...+++.|||+||+++++......+.. ..+.|......|.++.
T Consensus 77 g~~gN~lvi~vi~~~~~lr~~~~~~l~nLA~aDll~~~~~~p~~~~~--~~~~~~~~~~~c~~~~ 139 (520)
T 3v2y_A 77 IILENIFVLLTIWKTKKFHRPMYYFIGNLALSDLLAGVAYTANLLLS--GATTYKLTPAQWFLRE 139 (520)
T ss_dssp HHHHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHS--GGGGTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccccChHHHHHHHHHHHHHHHHHHHHHHHHHc--cccceeeCccccchHH
Confidence 68999999988777777778888999999999999998876665544 2333444445555544
No 162
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=91.23 E-value=0.039 Score=51.98 Aligned_cols=47 Identities=11% Similarity=0.132 Sum_probs=39.2
Q ss_pred cceeeEEEccCccccCCC----CCccccc-ceeEEEecCCcceeeccccccC
Q psy11830 6 NSLLDMKIVRTGLNHIPQ----FPVSNDL-VMEVIFLGYNNIKIIEGRAFNG 52 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~l~l~~n~i~~~~~~~f~~ 52 (387)
++|++||+++|+|+.++. ..+..++ +|+.|+|++|+|+......+.+
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 73 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQ 73 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHH
Confidence 458999999999999887 7777887 8999999999998887776654
No 163
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=89.42 E-value=0.29 Score=46.56 Aligned_cols=47 Identities=19% Similarity=0.147 Sum_probs=41.1
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCc---ceeeccccccCc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNN---IKIIEGRAFNGS 53 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~---i~~~~~~~f~~~ 53 (387)
++|+...+. ++++.|++..|.++.+|+.+.++.|. ++.|.+.+|.+.
T Consensus 64 ~~L~sI~iP-~svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c 113 (394)
T 4gt6_A 64 YVLTSVQIP-DTVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFC 113 (394)
T ss_dssp SCCCEEEEC-TTCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTC
T ss_pred CcCEEEEEC-CCeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhc
Confidence 458888885 56999999999999999999998765 999999999886
No 164
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=87.37 E-value=0.096 Score=49.28 Aligned_cols=46 Identities=9% Similarity=0.000 Sum_probs=36.5
Q ss_pred ceeeEEEccCccccCCCCCcccc-----cceeEEEecCCcceeeccccccC
Q psy11830 7 SLLDMKIVRTGLNHIPQFPVSND-----LVMEVIFLGYNNIKIIEGRAFNG 52 (387)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~l~~n~i~~~~~~~f~~ 52 (387)
+|++|++++|+|...+...+..+ .+|+.|+|++|+|+......+.+
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 102 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVK 102 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHH
Confidence 78888888888888877777776 78888888888888777665433
No 165
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Probab=86.97 E-value=1.6 Score=41.76 Aligned_cols=47 Identities=21% Similarity=0.289 Sum_probs=36.6
Q ss_pred hhhccCeeEEEeeeccCCCCCcchhhhhhhhHHHHHHHHHHHHHhhc
Q psy11830 84 LIFPGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAVK 130 (387)
Q Consensus 84 ~~~~gn~~~~~~~~~~~~~~~~~~~~~~~l~~ad~~~~~~~~ii~~~ 130 (387)
++++||.+++....+.++.++....++.|||++|++.++......+.
T Consensus 36 ~g~~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~~ 82 (467)
T 3uon_A 36 VTIIGNILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVFSMNLYTL 82 (467)
T ss_dssp HHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHheeeeeecCccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999998776666656778889999999999987766554433
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=86.68 E-value=0.83 Score=34.50 Aligned_cols=39 Identities=15% Similarity=0.180 Sum_probs=35.6
Q ss_pred ccCccccCCCCCcccccceeEEEecCCcceeeccccccCc
Q psy11830 14 VRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNGS 53 (387)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~~ 53 (387)
++.+++.|.+..|.+..+|+.+.|.. .++.|.+.+|.+.
T Consensus 4 ~g~~vt~I~~~aF~~c~~L~~i~iP~-~v~~Ig~~aF~~C 42 (100)
T 2lz0_A 4 EGEPVVGMDKSLFAGNTVIREITVQP-NIGLLYDGMFSGC 42 (100)
T ss_dssp CCCCCCSSCSCTTTTCTTCCCEEECT-TSSCCCTTSSTTC
T ss_pred CCCccCEecHHHhcCCCCCcEEEcCC-chheEcHHHHhcc
Confidence 56789999999999999999999976 5899999999997
No 167
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens}
Probab=85.13 E-value=2 Score=41.19 Aligned_cols=46 Identities=28% Similarity=0.375 Sum_probs=37.0
Q ss_pred hhhccCeeEEEeeeccCCCCCcchhhhhhhhHHHHHHHHHHHHHhh
Q psy11830 84 LIFPGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAV 129 (387)
Q Consensus 84 ~~~~gn~~~~~~~~~~~~~~~~~~~~~~~l~~ad~~~~~~~~ii~~ 129 (387)
++++||.+++....+.++.++...+++.|||++|+++++......+
T Consensus 51 ~g~~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~ 96 (481)
T 3pbl_A 51 AIVFGNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMPWVV 96 (481)
T ss_dssp HHHHHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHhHHhhhccccCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999998877776666777888999999999999877655444
No 168
>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}
Probab=85.05 E-value=0.12 Score=51.05 Aligned_cols=46 Identities=20% Similarity=0.252 Sum_probs=33.0
Q ss_pred hhccCeeEEEeeeccCCCC---CcchhhhhhhhHHHHHHHHHHHHHhhc
Q psy11830 85 IFPGNAAVLAVTLSRTSEK---SVPRFLISHLAMADLCMAFYLLLLAVK 130 (387)
Q Consensus 85 ~~~gn~~~~~~~~~~~~~~---~~~~~~~~~l~~ad~~~~~~~~ii~~~ 130 (387)
+++||.+|++...+.++.+ +...+++.|||+||++++++.+.+.+.
T Consensus 46 g~~gN~lvi~~i~~~~~~r~~~~~~n~~i~~La~aDll~~~~~~p~~~~ 94 (510)
T 4grv_A 46 GTVGNSVTLFTLARKKSLQSLQSTVHYHLGSLALSDLLILLLAMPVELY 94 (510)
T ss_dssp HHHHHHHHHHHTSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhheeeecCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999988766554333 355689999999999988887655544
No 169
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*
Probab=85.00 E-value=0.96 Score=43.21 Aligned_cols=41 Identities=29% Similarity=0.254 Sum_probs=34.0
Q ss_pred hhhccCeeEEEeeeccCCCCCcchhhhhhhhHHHHHHHHHH
Q psy11830 84 LIFPGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYL 124 (387)
Q Consensus 84 ~~~~gn~~~~~~~~~~~~~~~~~~~~~~~l~~ad~~~~~~~ 124 (387)
++++||.+++....+.++.++...+++.|||++|+++++.+
T Consensus 30 ~gi~gN~lvi~~~~~~~~~~~~~~~~l~~La~~Dll~~~~~ 70 (464)
T 4dkl_A 30 VGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADALATSTL 70 (464)
T ss_dssp HHHHHHHHHHHHHHHCSTTCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHeehhhhhccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 36899999988877766666778889999999999888764
No 170
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=83.00 E-value=0.16 Score=48.11 Aligned_cols=41 Identities=7% Similarity=-0.014 Sum_probs=21.9
Q ss_pred cceeeEEEccCcccc-----CCCCCcccccceeEEEecCCcceeec
Q psy11830 6 NSLLDMKIVRTGLNH-----IPQFPVSNDLVMEVIFLGYNNIKIIE 46 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~l~~n~i~~~~ 46 (387)
.+|+.|++++|+|.. +|+..+.++++|+.|+|++|.++...
T Consensus 274 ~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 274 IGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp CCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred CCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 345555555555555 55544445555555555555555444
No 171
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=82.98 E-value=0.14 Score=47.16 Aligned_cols=48 Identities=6% Similarity=0.063 Sum_probs=37.3
Q ss_pred ccceeeEEEccCccccCCCCCcccccceeEEEecCCcceee-ccccccCc
Q psy11830 5 ANSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKII-EGRAFNGS 53 (387)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~-~~~~f~~~ 53 (387)
..+++.|++.+|++...+...+ .+++|+.|+|++|.++.. -+..+...
T Consensus 69 ~~~l~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~~~l~~~~~~~~~~~~ 117 (336)
T 2ast_B 69 SQGVIAFRCPRSFMDQPLAEHF-SPFRVQHMDLSNSVIEVSTLHGILSQC 117 (336)
T ss_dssp HTTCSEEECTTCEECSCCCSCC-CCBCCCEEECTTCEECHHHHHHHHTTB
T ss_pred hccceEEEcCCccccccchhhc-cCCCCCEEEccCCCcCHHHHHHHHhhC
Confidence 3678999999999999987755 689999999999988754 33344443
No 172
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=82.70 E-value=0.56 Score=42.30 Aligned_cols=37 Identities=14% Similarity=0.113 Sum_probs=30.6
Q ss_pred cceeeEEEccCccccCCCCCccccc--ceeEEEecCCccee
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDL--VMEVIFLGYNNIKI 44 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~l~~n~i~~ 44 (387)
.+|..|+|++|+|+.+++ +..+. +|+.|+|++|.+..
T Consensus 196 ~~L~~L~Ls~N~i~~~~~--l~~l~~l~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 196 PNLKILNLSGNELKSERE--LDKIKGLKLEELWLDGNSLCD 234 (267)
T ss_dssp TTCCEEECTTSCCCSGGG--GGGGTTSCCSEEECTTSTTGG
T ss_pred CCCCEEECCCCccCCchh--hhhcccCCcceEEccCCcCcc
Confidence 579999999999999843 33344 99999999999975
No 173
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Probab=81.94 E-value=0.25 Score=48.11 Aligned_cols=41 Identities=27% Similarity=0.238 Sum_probs=33.4
Q ss_pred hhhccCeeEEEeeeccCCCCCcchhhhhhhhHHHHHHHHHH
Q psy11830 84 LIFPGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYL 124 (387)
Q Consensus 84 ~~~~gn~~~~~~~~~~~~~~~~~~~~~~~l~~ad~~~~~~~ 124 (387)
++++||.+++....+.++.++...+++.|||++|+++++.+
T Consensus 61 ~g~~gN~lvi~~~~~~~~l~~~~~~~l~~La~~Dll~~~~~ 101 (502)
T 3odu_A 61 TGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVITL 101 (502)
T ss_dssp HHHHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 36899999998877766667788889999999999886543
No 174
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR network, structural genomics, GPCR membrane 7TM NOP ORL1 cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo sapiens}
Probab=81.45 E-value=2.9 Score=39.78 Aligned_cols=39 Identities=31% Similarity=0.337 Sum_probs=32.1
Q ss_pred hhccCeeEEEeeeccCCCCCcchhhhhhhhHHHHHHHHH
Q psy11830 85 IFPGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFY 123 (387)
Q Consensus 85 ~~~gn~~~~~~~~~~~~~~~~~~~~~~~l~~ad~~~~~~ 123 (387)
+++||.+++....++++.++...+++.|||++|++..+.
T Consensus 139 gi~gN~lvi~~i~~~~~l~~~~~~ll~~LAvsDll~~~~ 177 (434)
T 4ea3_A 139 GLLGNCLVMYVILRHTKMKTATNIYIFNLALADTLVLLT 177 (434)
T ss_dssp HHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHeeeeeeecCccCchhHHHHHHHHHHHHHHHHH
Confidence 689999998877776666778888999999999987443
No 175
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Probab=81.24 E-value=0.26 Score=47.18 Aligned_cols=47 Identities=21% Similarity=0.212 Sum_probs=37.5
Q ss_pred hhhccCeeEEEeeeccCCCCCcchhhhhhhhHHHHHHHHHHHHHhhc
Q psy11830 84 LIFPGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAVK 130 (387)
Q Consensus 84 ~~~~gn~~~~~~~~~~~~~~~~~~~~~~~l~~ad~~~~~~~~ii~~~ 130 (387)
++++||.++++...+.++.++....++.|||++|++.++......+.
T Consensus 21 ~gi~gN~~vi~~~~~~~~~~~~~~~~l~~La~~Dll~~~~~~p~~~~ 67 (452)
T 3rze_A 21 VTVGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMNIL 67 (452)
T ss_dssp HHHHHHHHHHHHHHHCSTTCCGGGHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999998777766667788899999999999987766555444
No 176
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A*
Probab=80.56 E-value=0.18 Score=49.53 Aligned_cols=47 Identities=26% Similarity=0.364 Sum_probs=36.8
Q ss_pred hhhccCeeEEEeeeccCCCCCcchhhhhhhhHHHHHHHHHHHHHhhc
Q psy11830 84 LIFPGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAVK 130 (387)
Q Consensus 84 ~~~~gn~~~~~~~~~~~~~~~~~~~~~~~l~~ad~~~~~~~~ii~~~ 130 (387)
++++||.++++...+.++.++...+++.|||+||+++++..+...+.
T Consensus 53 ~gi~gN~lvi~~i~~~~~l~~~~~~~l~nLAiaDll~~~~~~p~~~~ 99 (500)
T 2rh1_A 53 AIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAA 99 (500)
T ss_dssp HHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCccCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999998776666666778899999999999998765544433
No 177
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=80.28 E-value=0.52 Score=43.24 Aligned_cols=39 Identities=3% Similarity=-0.174 Sum_probs=19.4
Q ss_pred eeeEEEccCccccCCCCCcccc--cceeEEEecCCcceeecccc
Q psy11830 8 LLDMKIVRTGLNHIPQFPVSND--LVMEVIFLGYNNIKIIEGRA 49 (387)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~l~~n~i~~~~~~~ 49 (387)
++.+|+++|++. +..+..+ .+++.|+|++|.++...+..
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~ 89 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEH 89 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSC
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhh
Confidence 445555555443 2333344 45555555555555554443
No 178
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ...
Probab=79.96 E-value=0.26 Score=45.32 Aligned_cols=44 Identities=30% Similarity=0.343 Sum_probs=35.5
Q ss_pred hhccCeeEEEeeeccCCCCCcchhhhhhhhHHHHHHHHHHHHHh
Q psy11830 85 IFPGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLA 128 (387)
Q Consensus 85 ~~~gn~~~~~~~~~~~~~~~~~~~~~~~l~~ad~~~~~~~~ii~ 128 (387)
++.||.+++....++++.++....++.|||++|++.++......
T Consensus 52 gi~gN~lvi~~i~~~~~~~~~~~~ll~~Lai~Dll~~~~~~~~~ 95 (349)
T 1u19_A 52 GFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTT 95 (349)
T ss_dssp HHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHhHHheEeehhhhhhhcCchhHHHHHHHHHHHHHHHhcchHH
Confidence 68999999988777666677778899999999999887654443
No 179
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Probab=79.81 E-value=0.24 Score=47.98 Aligned_cols=46 Identities=22% Similarity=0.342 Sum_probs=36.4
Q ss_pred hhhccCeeEEEeeeccCCCCCcchhhhhhhhHHHHHHHHHHHHHhh
Q psy11830 84 LIFPGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAV 129 (387)
Q Consensus 84 ~~~~gn~~~~~~~~~~~~~~~~~~~~~~~l~~ad~~~~~~~~ii~~ 129 (387)
++++||.++++...+.++.++....++.|||++|+++++..+...+
T Consensus 34 ~gi~gN~lvi~~~~~~~~~~~~~~~~l~~La~aDll~~~~~~p~~~ 79 (488)
T 3eml_A 34 LAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAI 79 (488)
T ss_dssp HHHHHHHHHHHHHHHCGGGCSSHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHhhhheeeccccCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999877666666677889999999999998776655443
No 180
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A
Probab=79.73 E-value=0.26 Score=45.80 Aligned_cols=44 Identities=23% Similarity=0.406 Sum_probs=35.0
Q ss_pred hhhccCeeEEEeeeccCCCCCcchhhhhhhhHHHHHHHHHHHHH
Q psy11830 84 LIFPGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLL 127 (387)
Q Consensus 84 ~~~~gn~~~~~~~~~~~~~~~~~~~~~~~l~~ad~~~~~~~~ii 127 (387)
+++.||.+++....++++.++....++.|||++|+++++.....
T Consensus 45 ~gi~gN~lvi~vi~~~~~l~~~~~~~l~~LaiaDll~~~~~~p~ 88 (364)
T 2ks9_A 45 TSVVGNVVVMWIILAHKRMRTVTNYFLVNLAFAEASMAAFNTVV 88 (364)
T ss_dssp HHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999998777766666778889999999999887655443
No 181
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Probab=77.96 E-value=0.25 Score=47.17 Aligned_cols=45 Identities=22% Similarity=0.327 Sum_probs=35.5
Q ss_pred hhhccCeeEEEeeeccCCCCCcchhhhhhhhHHHHHHHHHHHHHh
Q psy11830 84 LIFPGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLA 128 (387)
Q Consensus 84 ~~~~gn~~~~~~~~~~~~~~~~~~~~~~~l~~ad~~~~~~~~ii~ 128 (387)
++++||.+++....+.++.++....++.|||++|++.++..+...
T Consensus 44 ~gi~gN~~vl~~~~~~~~l~~~~~~~l~~La~~Dll~~~~~~p~~ 88 (447)
T 4eiy_A 44 LAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFA 88 (447)
T ss_dssp HHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHccccCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368999999987766666667888899999999999876654443
No 182
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=77.27 E-value=0.5 Score=44.53 Aligned_cols=38 Identities=18% Similarity=0.187 Sum_probs=30.0
Q ss_pred cceeeEEEccCcccc-----CCCCCcccccceeEEEecCCcce
Q psy11830 6 NSLLDMKIVRTGLNH-----IPQFPVSNDLVMEVIFLGYNNIK 43 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~l~~n~i~ 43 (387)
.+|+.|++.+|+|.. +.+..+..+++|+.|+|++|.|+
T Consensus 187 ~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~ 229 (386)
T 2ca6_A 187 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT 229 (386)
T ss_dssp TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCH
T ss_pred CCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCC
Confidence 478999999998882 33346678889999999999984
No 183
>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}
Probab=76.41 E-value=0.23 Score=48.05 Aligned_cols=43 Identities=23% Similarity=0.263 Sum_probs=34.0
Q ss_pred hhhccCeeEEEeeeccCCCCCcchhhhhhhhHHHHHHHHHHHH
Q psy11830 84 LIFPGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLL 126 (387)
Q Consensus 84 ~~~~gn~~~~~~~~~~~~~~~~~~~~~~~l~~ad~~~~~~~~i 126 (387)
++++||.+++....+.++.++...+++.|||+||+++++.+..
T Consensus 33 ~~i~gN~lvi~~~~~~~~l~~~~~~~l~~La~aDll~~~~~~~ 75 (484)
T 3vw7_A 33 VSLPLNIMAIVVFILKMKVKKPAVVYMLHLATADVLFVSVLPF 75 (484)
T ss_dssp HHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999998876666665677788999999999998765443
No 184
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Probab=76.15 E-value=0.43 Score=45.85 Aligned_cols=41 Identities=20% Similarity=0.265 Sum_probs=33.8
Q ss_pred hhhccCeeEEEeeeccCCCCCcchhhhhhhhHHHHHHHHHH
Q psy11830 84 LIFPGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYL 124 (387)
Q Consensus 84 ~~~~gn~~~~~~~~~~~~~~~~~~~~~~~l~~ad~~~~~~~ 124 (387)
++++||.+++....++++.++....++.|||++|++.++..
T Consensus 47 ~gi~gN~lvi~vi~~~~~~~~~~~~ll~~LaiaDll~~~~~ 87 (448)
T 2z73_A 47 IGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVN 87 (448)
T ss_dssp HHHHHHHHHHHHHHHCSTTCSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHhhhhhhhccccCCccchHHHHHHHHHHHHHHHH
Confidence 36899999998877766667778899999999999887653
No 185
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=74.85 E-value=0.37 Score=45.63 Aligned_cols=43 Identities=5% Similarity=-0.048 Sum_probs=32.4
Q ss_pred cceeeEEEccCccccCCCCCc----ccccceeEEEecCCcceeeccc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPV----SNDLVMEVIFLGYNNIKIIEGR 48 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~l~~n~i~~~~~~ 48 (387)
.+|++|++++|+|+..+...+ ...++|+.|||++|.|+.....
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~ 201 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLE 201 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHH
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHH
Confidence 569999999999876443333 4567899999999998876533
No 186
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=73.92 E-value=0.58 Score=45.00 Aligned_cols=39 Identities=8% Similarity=0.025 Sum_probs=19.3
Q ss_pred ceeeEEEccCccccCC----CCCcccccceeEEEecCCcceee
Q psy11830 7 SLLDMKIVRTGLNHIP----QFPVSNDLVMEVIFLGYNNIKII 45 (387)
Q Consensus 7 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~l~~n~i~~~ 45 (387)
+|++|++++|+|.... ...+..+++|+.|+|++|.|+..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 128 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDA 128 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchH
Confidence 3555555555555321 23344555555555555555443
No 187
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=68.22 E-value=0.71 Score=38.82 Aligned_cols=45 Identities=4% Similarity=-0.079 Sum_probs=27.3
Q ss_pred cceeeEEEccC-ccccCCC----CCcccccceeEEEecCCcceeeccccc
Q psy11830 6 NSLLDMKIVRT-GLNHIPQ----FPVSNDLVMEVIFLGYNNIKIIEGRAF 50 (387)
Q Consensus 6 ~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~l~l~~n~i~~~~~~~f 50 (387)
.+|++|++++| +|..-.- ......++|+.|+|++|+|.......+
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l 85 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFAL 85 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHH
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHH
Confidence 56788888887 6654211 112234678888888888766444433
No 188
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A*
Probab=67.72 E-value=0.2 Score=45.15 Aligned_cols=41 Identities=32% Similarity=0.468 Sum_probs=32.8
Q ss_pred hhhccCeeEEEeeeccCCCCCcchhhhhhhhHHHHHHHHHH
Q psy11830 84 LIFPGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYL 124 (387)
Q Consensus 84 ~~~~gn~~~~~~~~~~~~~~~~~~~~~~~l~~ad~~~~~~~ 124 (387)
+++.||.+++....++++.++....++.|||++|++.++..
T Consensus 24 ~gi~gN~lvi~~i~~~~~~~~~~~~ll~~LaiaDll~~~~~ 64 (315)
T 4amj_A 24 LIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLV 64 (315)
T ss_dssp HHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHhHHhhhchhhcchHHHHHHHHHHHHHHHHHHh
Confidence 36899999988776666666778889999999999876543
No 189
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=66.33 E-value=0.85 Score=43.14 Aligned_cols=45 Identities=7% Similarity=-0.009 Sum_probs=34.5
Q ss_pred cceeeEEEccCccccCCCCCc-----ccccceeEEEecCCcceeeccccc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPV-----SNDLVMEVIFLGYNNIKIIEGRAF 50 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~l~~n~i~~~~~~~f 50 (387)
.+|++|++++|+|...+...+ .+..+|+.|+|++|.|+......+
T Consensus 126 ~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l 175 (372)
T 3un9_A 126 LRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVL 175 (372)
T ss_dssp HTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHH
T ss_pred HhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHH
Confidence 368999999999976554444 345789999999999987665554
No 190
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A*
Probab=65.56 E-value=0.39 Score=47.23 Aligned_cols=44 Identities=27% Similarity=0.400 Sum_probs=34.5
Q ss_pred hhccCeeEEEeeeccCCCCCcchhhhhhhhHHHHHHHHHHHHHh
Q psy11830 85 IFPGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLA 128 (387)
Q Consensus 85 ~~~gn~~~~~~~~~~~~~~~~~~~~~~~l~~ad~~~~~~~~ii~ 128 (387)
++.||.+++....+.++.++....++.|||+||+++++......
T Consensus 196 gi~gN~lvi~vi~~~~~lr~~~~~ll~nLAiaDll~~~~~~p~~ 239 (514)
T 3sn6_R 196 IVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFG 239 (514)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTTTTHHHHH
T ss_pred HHHhHHHhhhheecccccccHHHHHHHHHHHHHHHHHHHhCHHH
Confidence 68999999877666666667788899999999998876544433
No 191
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=63.41 E-value=0.83 Score=43.89 Aligned_cols=40 Identities=10% Similarity=0.095 Sum_probs=18.5
Q ss_pred ceeeEEEccCccccCC----CCCcccccceeEEEecCCcceeec
Q psy11830 7 SLLDMKIVRTGLNHIP----QFPVSNDLVMEVIFLGYNNIKIIE 46 (387)
Q Consensus 7 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~l~~n~i~~~~ 46 (387)
+|++|++++|+++... ...+..+++|+.|+|++|+|+...
T Consensus 29 ~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 72 (461)
T 1z7x_W 29 QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVG 72 (461)
T ss_dssp TCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHH
T ss_pred CccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHH
Confidence 4555555555544221 122333455555555555555433
No 192
>2lot_A Apelin receptor; membrane protein; NMR {Homo sapiens} PDB: 2lou_A 2lov_A 2low_A
Probab=61.31 E-value=1.3 Score=30.52 Aligned_cols=16 Identities=25% Similarity=0.397 Sum_probs=13.8
Q ss_pred hcccceeeeeeeccCC
Q psy11830 147 KGNAAVLAVTLSRTSE 162 (387)
Q Consensus 147 ~gN~lvi~vi~~~~~l 162 (387)
+||++|++++.++|.-
T Consensus 44 ~GN~lvl~v~~~~~~~ 59 (64)
T 2lot_A 44 TGNGLVLWTVFRKKGH 59 (64)
T ss_dssp TSSSSHHHHHHHHSSS
T ss_pred hhhhhheeeeeEeccc
Confidence 9999999999877754
No 193
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=57.75 E-value=6.3 Score=32.94 Aligned_cols=34 Identities=12% Similarity=-0.047 Sum_probs=19.1
Q ss_pred ceeeEEEccCccccCCCCCcccccceeEEEecCC
Q psy11830 7 SLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYN 40 (387)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n 40 (387)
.|++||++++.|+...=...+++++|+.|+|+++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC 95 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence 3566666666555443333355566666666665
No 194
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=55.95 E-value=2.9 Score=34.96 Aligned_cols=46 Identities=17% Similarity=0.048 Sum_probs=32.7
Q ss_pred ccceeeEEEccCccccCCCC----CcccccceeEEEecCCcceeeccccc
Q psy11830 5 ANSLLDMKIVRTGLNHIPQF----PVSNDLVMEVIFLGYNNIKIIEGRAF 50 (387)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~l~~n~i~~~~~~~f 50 (387)
..+|++|++++|+|..-.-. ......+|+.|+|++|.|+......+
T Consensus 64 ~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l 113 (185)
T 1io0_A 64 NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 113 (185)
T ss_dssp CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred CCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence 36799999999998753211 12344689999999999987654444
No 195
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=55.86 E-value=2.6 Score=35.98 Aligned_cols=47 Identities=17% Similarity=0.110 Sum_probs=26.3
Q ss_pred cceeeEEEccC-ccccCC----CCCcccccceeEEEecCCcceeeccccccC
Q psy11830 6 NSLLDMKIVRT-GLNHIP----QFPVSNDLVMEVIFLGYNNIKIIEGRAFNG 52 (387)
Q Consensus 6 ~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~l~l~~n~i~~~~~~~f~~ 52 (387)
.+|++|++++| +|..-. -.....-..|+.|+|++|+|...-..++.+
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~ 92 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIE 92 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHH
Confidence 46777888764 554210 001112245777777777777666555544
No 196
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=50.74 E-value=3.6 Score=38.67 Aligned_cols=45 Identities=11% Similarity=0.018 Sum_probs=31.0
Q ss_pred cceeeEEEccCccccCC-CCCc--ccccceeEEEecCCcceeeccccc
Q psy11830 6 NSLLDMKIVRTGLNHIP-QFPV--SNDLVMEVIFLGYNNIKIIEGRAF 50 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~l~l~~n~i~~~~~~~f 50 (387)
.+|+.|++.+|.+..-. ...+ ..+++|+.|+|+.|+|+......+
T Consensus 252 p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L 299 (362)
T 2ra8_A 252 PNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLL 299 (362)
T ss_dssp TTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHH
T ss_pred CCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHH
Confidence 58999999998876311 1111 246889999999999887554443
No 197
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=48.67 E-value=3.4 Score=40.96 Aligned_cols=40 Identities=5% Similarity=-0.219 Sum_probs=27.4
Q ss_pred ccceeeEEEccCccccCC-CCCcccccceeEEEecCCccee
Q psy11830 5 ANSLLDMKIVRTGLNHIP-QFPVSNDLVMEVIFLGYNNIKI 44 (387)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~l~~n~i~~ 44 (387)
..+|++|++.+|+++... .....++++|+.|+|++|.|+.
T Consensus 462 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~ 502 (592)
T 3ogk_B 462 SPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSE 502 (592)
T ss_dssp CTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBH
T ss_pred CccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcH
Confidence 356888888888876522 2233566788888888888654
No 198
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=45.92 E-value=4.2 Score=40.30 Aligned_cols=37 Identities=5% Similarity=0.083 Sum_probs=16.0
Q ss_pred ceeeEEEccCccccCCCC----CcccccceeEEEecCCcce
Q psy11830 7 SLLDMKIVRTGLNHIPQF----PVSNDLVMEVIFLGYNNIK 43 (387)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~l~~n~i~ 43 (387)
+|++|++++|++...+.. ...++++|+.|+|++|+++
T Consensus 165 ~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~ 205 (592)
T 3ogk_B 165 KIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFA 205 (592)
T ss_dssp TCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCS
T ss_pred CCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCC
Confidence 455555555544332111 1223444555555555444
No 199
>2ki9_A Cannabinoid receptor 2; GPCR, G-protein coupled receptor, membrane protein; NMR {Synthetic}
Probab=45.05 E-value=4.2 Score=23.46 Aligned_cols=15 Identities=33% Similarity=0.970 Sum_probs=11.7
Q ss_pred hhhhhhhheeeeecc
Q psy11830 370 SLVFAMICVCYFQIY 384 (387)
Q Consensus 370 ~~~f~~f~~cylpi~ 384 (387)
..+...|++||+|.+
T Consensus 9 ~~vv~~F~icW~P~~ 23 (33)
T 2ki9_A 9 GLVLAVLLICWFPVL 23 (33)
T ss_dssp HHHHHHHTTTSSHHH
T ss_pred HHHHHHHHHHHhHHH
Confidence 455688999999964
No 200
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=41.85 E-value=25 Score=26.10 Aligned_cols=42 Identities=7% Similarity=0.044 Sum_probs=33.9
Q ss_pred cceeeEEEccCccccCCCCCcccccceeEEEecCCcceeeccc
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGR 48 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~n~i~~~~~~ 48 (387)
.+|+++.+.. +++.|.+..|.++.+|+.+.+..++-..+...
T Consensus 20 ~~L~~i~iP~-~v~~Ig~~aF~~C~~L~~i~~~~~~P~~~~~~ 61 (100)
T 2lz0_A 20 TVIREITVQP-NIGLLYDGMFSGCTALEKLILTGEDPSAYSAG 61 (100)
T ss_dssp TTCCCEEECT-TSSCCCTTSSTTCTTCCCEEECCSCGGGCCCT
T ss_pred CCCcEEEcCC-chheEcHHHHhccCCccEEEEcCCCCCeEecc
Confidence 5788888865 69999999999999999999998654444333
No 201
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=39.71 E-value=5.6 Score=39.29 Aligned_cols=38 Identities=8% Similarity=-0.009 Sum_probs=19.4
Q ss_pred cceeeEEEccCccccCCCCCc-ccccceeEEEecCCcce
Q psy11830 6 NSLLDMKIVRTGLNHIPQFPV-SNDLVMEVIFLGYNNIK 43 (387)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~l~~n~i~ 43 (387)
.+|++|++++|++....-..+ ..+++|+.|+|++|.++
T Consensus 456 ~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~ 494 (594)
T 2p1m_B 456 KKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFG 494 (594)
T ss_dssp TTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCC
T ss_pred hhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCc
Confidence 346666666665533221111 34556666666666653
No 202
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=33.45 E-value=13 Score=36.55 Aligned_cols=42 Identities=7% Similarity=0.133 Sum_probs=20.8
Q ss_pred cceeeEEEccC-cccc--CCCCCcccccceeEEEecCCcceeeccc
Q psy11830 6 NSLLDMKIVRT-GLNH--IPQFPVSNDLVMEVIFLGYNNIKIIEGR 48 (387)
Q Consensus 6 ~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~l~l~~n~i~~~~~~ 48 (387)
.+|++|++++| .+.. ++ ....++++|+.|+|++|.++.....
T Consensus 130 ~~L~~L~L~~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~i~~~~~~ 174 (594)
T 2p1m_B 130 KNFKVLVLSSCEGFSTDGLA-AIAATCRNLKELDLRESDVDDVSGH 174 (594)
T ss_dssp TTCCEEEEESCEEEEHHHHH-HHHHHCTTCCEEECTTCEEECCCGG
T ss_pred CCCcEEeCCCcCCCCHHHHH-HHHHhCCCCCEEeCcCCccCCcchH
Confidence 35666666655 3332 11 1223455666666666665554433
No 203
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=30.07 E-value=9.1 Score=35.83 Aligned_cols=40 Identities=5% Similarity=-0.077 Sum_probs=25.7
Q ss_pred cceeeEEEccC--c------cccCCCCCc-ccccceeEEEecCCcceee
Q psy11830 6 NSLLDMKIVRT--G------LNHIPQFPV-SNDLVMEVIFLGYNNIKII 45 (387)
Q Consensus 6 ~~~~~~~~~~~--~------~~~~~~~~~-~~~~~~~~l~l~~n~i~~~ 45 (387)
.+|+.|+|..+ . ++.+.+..- ...++|+.|+|++|+|...
T Consensus 219 p~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~ 267 (362)
T 2ra8_A 219 PNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNV 267 (362)
T ss_dssp TTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHH
T ss_pred CCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchH
Confidence 57899998532 1 222322111 2468999999999999853
No 204
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=20.09 E-value=21 Score=29.70 Aligned_cols=39 Identities=5% Similarity=-0.105 Sum_probs=22.5
Q ss_pred cceeeEEEccCc-cccCCCCCcccc----cceeEEEecCCc-cee
Q psy11830 6 NSLLDMKIVRTG-LNHIPQFPVSND----LVMEVIFLGYNN-IKI 44 (387)
Q Consensus 6 ~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~l~l~~n~-i~~ 44 (387)
.+|++|++++.. |+.-.=...+.+ ++|+.|+|+++. |+.
T Consensus 85 ~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD 129 (176)
T 3e4g_A 85 QYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD 129 (176)
T ss_dssp SCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred CCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH
Confidence 478888888863 332111111222 368899998864 554
Done!