RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy11830
         (387 letters)



>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family).
           This family contains, amongst other G-protein-coupled
           receptors (GCPRs), members of the opsin family, which
           have been considered to be typical members of the
           rhodopsin superfamily. They share several motifs, mainly
           the seven transmembrane helices, GCPRs of the rhodopsin
           superfamily. All opsins bind a chromophore, such as
           11-cis-retinal. The function of most opsins other than
           the photoisomerases is split into two steps: light
           absorption and G-protein activation. Photoisomerases, on
           the other hand, are not coupled to G-proteins - they are
           thought to generate and supply the chromophore that is
           used by visual opsins.
          Length = 251

 Score = 79.7 bits (197), Expect = 5e-17
 Identities = 44/182 (24%), Positives = 68/182 (37%), Gaps = 15/182 (8%)

Query: 154 AVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQKGY-GCK 212
            V L     ++     + +LA+ADL     L   A+        Y+    DW  G   CK
Sbjct: 1   LVILRTKKLRTPTNIFLLNLAVADLLFLLTLPPWAL--------YYLVGGDWPFGDALCK 52

Query: 213 VAGFVTVFASQLSIFTLGMITLERWYSIKRAL-YANKLTIHRTTYFILVGYVYASIMGAL 271
           + GF+ V     SI  L  I+++R+ +I   L Y    T  R    ILV +V A ++   
Sbjct: 53  LVGFLFVVNGYASILLLTAISIDRYLAIVHPLRYRRIRTPRRAKVLILVVWVLALLLSLP 112

Query: 272 PMFGI----SSYSTTSICLPMDTRHLGSKIYVHTLLLFSSLV-FAMICVCYFQIYSSLGN 326
           P+             + CL         + Y     L   ++   +I VCY  I  +L  
Sbjct: 113 PLLFSWLRTVEEGNVTTCLIDFPEESTKRSYTLLSTLLGFVLPLLVILVCYTLILRTLRK 172

Query: 327 VL 328
             
Sbjct: 173 RA 174



 Score = 28.0 bits (63), Expect = 7.0
 Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 8/57 (14%)

Query: 94  AVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAVKDLQSTEVYFNYAYDWQKGNA 150
            V L     ++     + +LA+ADL     L   A        +Y+    DW  G+A
Sbjct: 1   LVILRTKKLRTPTNIFLLNLAVADLLFLLTLPPWA--------LYYLVGGDWPFGDA 49


>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like
           protein; Provisional.
          Length = 335

 Score = 35.1 bits (81), Expect = 0.054
 Identities = 29/157 (18%), Positives = 71/157 (45%), Gaps = 12/157 (7%)

Query: 180 MAFYLLLLAIKDLQST-----EVYFNYAYDWQKG-YGCKVAGFVTVFASQLSIFTLGMIT 233
           M  YLL LA+ DL        ++Y+   + W  G + CK+   +       S+  + +++
Sbjct: 74  MDIYLLNLAVSDLLFVMTLPFQIYYYILFQWSFGEFACKIVSGLYYIGFYNSMNFITVMS 133

Query: 234 LERWYSIKRALYANKLTIHRTTYFILVGYVYASIMGALPMFGI----SSYSTTSICLPMD 289
           ++R+ +I   + +NK+   +  Y + +     SI+   P+  +      + T   C+  +
Sbjct: 134 VDRYIAIVHPVKSNKINTVKYGYIVSLVIWIISIIETTPILFVYTTKKDHETLICCMFYN 193

Query: 290 TRHLGSKIYVHTLLLFSSLV--FAMICVCYFQIYSSL 324
            + +  K++++  +    ++    ++  CY +I  +L
Sbjct: 194 NKTMNWKLFINFEINIIGMLIPLTILLYCYSKILITL 230


>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP)
           Family protein.  [Transport and binding proteins,
           Other].
          Length = 617

 Score = 31.2 bits (71), Expect = 1.0
 Identities = 28/139 (20%), Positives = 41/139 (29%), Gaps = 37/139 (26%)

Query: 213 VAGFVTVFASQLSIFTLGMITLERWYSIKRALYANKLTIHRTTYFILVGYVYASIMGALP 272
           V   + VF ++L +F     T    Y +               YF+      A  +  LP
Sbjct: 408 VFPVINVFTAELPVFLRE--TRSGLYRVS-------------AYFL------AKTIAELP 446

Query: 273 MFGISSYSTTSICLPMDTRHLGSKIYVHTLLLFSSLVFAMICVCYFQIYSSLGNVLTADL 332
           +F I     TSI   M    +G          F  L F  +      + +S G       
Sbjct: 447 LFIILPALFTSITYWM----IG---LRSGATHF--LTFLFLVTLVANVATSFG------- 490

Query: 333 LFLITGISSYSTTSICLPM 351
             +    SS S      P 
Sbjct: 491 YLISCAFSSTSMALTVGPP 509


>gnl|CDD|235235 PRK04165, PRK04165, acetyl-CoA decarbonylase/synthase complex
           subunit gamma; Provisional.
          Length = 450

 Score = 29.4 bits (67), Expect = 3.3
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 11/47 (23%)

Query: 47  GRAFNGSQISKFVSKIRPEQKLNPRPSAYNTYYNFTRLIFPGNAAVL 93
              F G +I+ F+ +   E+K+N R           +LI PG AAVL
Sbjct: 382 AGKFTGEKIADFIKESGIEEKVNHR-----------KLIIPGLAAVL 417


>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat. 
          Length = 60

 Score = 26.4 bits (59), Expect = 5.7
 Identities = 8/21 (38%), Positives = 13/21 (61%)

Query: 32 MEVIFLGYNNIKIIEGRAFNG 52
          ++V+ L  NN+  I   AF+G
Sbjct: 26 LKVLDLSGNNLTSISPEAFSG 46


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.328    0.139    0.415 

Gapped
Lambda     K      H
   0.267   0.0810    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,290,222
Number of extensions: 1849092
Number of successful extensions: 2011
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1998
Number of HSP's successfully gapped: 37
Length of query: 387
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 288
Effective length of database: 6,546,556
Effective search space: 1885408128
Effective search space used: 1885408128
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 60 (26.7 bits)