RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11830
(387 letters)
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal
protei photoreceptor, signaling protein; HET: MAN NAG
BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2
PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A*
2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A*
1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A*
...
Length = 349
Score = 85.9 bits (213), Expect = 7e-19
Identities = 33/185 (17%), Positives = 75/185 (40%), Gaps = 16/185 (8%)
Query: 148 GNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQK 207
N L VT+ ++ +++ +LA+ADL M F + Y + +
Sbjct: 55 INFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTL--------YTSLHGYFVF 106
Query: 208 GY-GCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANKLTIHRTTYFILVGYVYAS 266
G GC + GF ++++++L ++ +ER+ + + + + + + +V A
Sbjct: 107 GPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMAL 166
Query: 267 IMGALPMFGISSYS------TTSICLPMDTRHLGSKIYVHTLLLFSSLV-FAMICVCYFQ 319
A P+ G S Y + I ++ +V + + ++ +I CY Q
Sbjct: 167 ACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQ 226
Query: 320 IYSSL 324
+ ++
Sbjct: 227 LVFTV 231
Score = 33.1 bits (76), Expect = 0.14
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 86 FPGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAF 122
FP N L VT+ ++ +++ +LA+ADL M F
Sbjct: 53 FPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVF 89
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 83.4 bits (206), Expect = 1e-17
Identities = 38/184 (20%), Positives = 75/184 (40%), Gaps = 14/184 (7%)
Query: 148 GNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQK 207
GN V+ + S ++ I +LA +D + + W
Sbjct: 51 GNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGF-------PLMTISCFLKKWIF 103
Query: 208 GY-GCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANK-LTIHRTTYFILVGYVYA 265
G+ CKV GF+ +SI T+ MI+++R+ I R + A+K ++ R I+ ++++
Sbjct: 104 GFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWS 163
Query: 266 SIMGALPMFGISSY----STTSICLPMDTRHLGSKIYVHTLLLFSSLV-FAMICVCYFQI 320
+ P+FG +Y + +R ++ + + + +I CYF I
Sbjct: 164 VLWAIGPIFGWGAYTLEGVLCNCSFDYISRDSTTRSNILCMFILGFFGPILIIFFCYFNI 223
Query: 321 YSSL 324
S+
Sbjct: 224 VMSV 227
Score = 31.8 bits (72), Expect = 0.42
Identities = 8/37 (21%), Positives = 15/37 (40%)
Query: 86 FPGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAF 122
GN V+ + S ++ I +LA +D +
Sbjct: 49 CGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSL 85
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor,
lipid receptor, multiple sclerosi autoimmunity,
structural genomics, PSI-biology; HET: ML5 NAG; 2.80A
{Homo sapiens} PDB: 3v2w_A*
Length = 520
Score = 69.1 bits (168), Expect = 5e-13
Identities = 37/177 (20%), Positives = 63/177 (35%), Gaps = 20/177 (11%)
Query: 148 GNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQK 207
N VL + I +LA++DL +
Sbjct: 80 ENIFVLLTIWKTKKFHRPMYYFIGNLALSDLLAGVAYTANL--------LLSGATTYKLT 131
Query: 208 GYGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANKLTIHRTTYFILVGYVYASI 267
+ A S+F+L I +ER+ ++ + N R I +V + I
Sbjct: 132 PAQWFLREGSMFVALSASVFSLLAIAIERYITMLKMKLHNGSNNFRLFLLISACWVISLI 191
Query: 268 MGALPMFG---ISSYSTTSICLPMDTRHLGSKIYVHTLLLFSSLVFAMICVCYFQIY 321
+G LP+ G IS+ S+ S LP+ K Y+ LF + VF ++ + +Y
Sbjct: 192 LGGLPIMGWNCISALSSCSTVLPLY-----HKHYI----LFCTTVFTLLLLSIVILY 239
Score = 29.8 bits (66), Expect = 1.8
Identities = 9/46 (19%), Positives = 14/46 (30%)
Query: 84 LIFPGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAV 129
I N VL + I +LA++DL +
Sbjct: 76 FIILENIFVLLTIWKTKKFHRPMYYFIGNLALSDLLAGVAYTANLL 121
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural
genomics, PSI-2, protein structure initiative; HET: ITD
OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A*
3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Length = 502
Score = 65.3 bits (159), Expect = 1e-11
Identities = 37/180 (20%), Positives = 65/180 (36%), Gaps = 19/180 (10%)
Query: 148 GNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQK 207
GN V+ V + +S+ HL++ADL L A+ + +W
Sbjct: 65 GNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVITLPFWAV----------DAVANWYF 114
Query: 208 GYG-CKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANKLTIHRTTYFILVGYVYAS 266
G CK + S++ L I+L+R+ +I A + + + VG +
Sbjct: 115 GNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPA 174
Query: 267 IMGALPMF---GISSYSTTSICL---PMDTRHLGSKIYVHTLLLFSSLVFAMICVCYFQI 320
++ +P F +S IC P D + + + L + I CY I
Sbjct: 175 LLLTIPDFIFANVSEADDRYICDRFYPNDLWVVVFQFQHIMVGLILPGIV--ILSCYCII 232
Score = 36.0 bits (83), Expect = 0.017
Identities = 16/67 (23%), Positives = 24/67 (35%), Gaps = 10/67 (14%)
Query: 84 LIFPGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAVKDLQSTEVYFNYAY 143
GN V+ V + +S+ HL++ADL L AV +
Sbjct: 61 TGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVITLPFWAV----------DAVA 110
Query: 144 DWQKGNA 150
+W GN
Sbjct: 111 NWYFGNF 117
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR
network, structural genomics, GPCR membrane 7TM NOP ORL1
cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo
sapiens}
Length = 434
Score = 64.8 bits (158), Expect = 1e-11
Identities = 39/187 (20%), Positives = 66/187 (35%), Gaps = 16/187 (8%)
Query: 148 GNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQK 207
GN V+ V L T K+ I +LA+AD + L L W
Sbjct: 142 GNCLVMYVILRHTKMKTATNIYIFNLALADTLVLLTLPFQGTDILLGF---------WPF 192
Query: 208 G-YGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANKLTIHRTTYFILVGYVYAS 266
G CK + + S FTL ++++R+ +I + A + + V +
Sbjct: 193 GNALCKTVIAIDYYNMFTSTFTLTAMSVDRYVAICHPIRALDVRTSSKAQAVNVAIWALA 252
Query: 267 IMGALPMF---GISSYSTTSICLPM--DTRHLGSKIYVHTLLLFSSLV-FAMICVCYFQI 320
+ +P+ CL + ++ + LFS +V +I VCY +
Sbjct: 253 SVVGVPVAIMGSAQVEDEEIECLVEIPTPQDYWGPVFAICIFLFSFIVPVLVISVCYSLM 312
Query: 321 YSSLGNV 327
L V
Sbjct: 313 IRRLRGV 319
Score = 33.6 bits (77), Expect = 0.089
Identities = 13/44 (29%), Positives = 18/44 (40%)
Query: 86 FPGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAV 129
GN V+ V L T K+ I +LA+AD + L
Sbjct: 140 LLGNCLVMYVILRHTKMKTATNIYIFNLALADTLVLLTLPFQGT 183
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR,
membrane protein, LCP, mesophase, structural genomics,
PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Length = 488
Score = 61.7 bits (149), Expect = 1e-10
Identities = 37/189 (19%), Positives = 72/189 (38%), Gaps = 25/189 (13%)
Query: 148 GNAAV-LAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQ 206
GN V AV L+ + ++V + + LA AD+ + + AI ST
Sbjct: 38 GNVLVCWAVWLNS-NLQNVTNYFVVSLAAADIAVGVLAIPFAI--TISTGFCAACHG--- 91
Query: 207 KGYGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRAL-YANKLTIHRTTYFILVGYVYA 265
C + +Q SIF+L I ++R+ +I+ L Y +T R I + +V +
Sbjct: 92 ----CLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLS 147
Query: 266 SIMGALPMFGISSYSTTSICLPMDTRHLGSK--------IYVHTLLLFSSLV-----FAM 312
+G PM G ++ + + ++ ++ F+ +
Sbjct: 148 FAIGLTPMLGWNNCGQPKEGKNHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLL 207
Query: 313 ICVCYFQIY 321
+ Y +I+
Sbjct: 208 MLGVYLRIF 216
Score = 27.4 bits (60), Expect = 8.9
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 84 LIFPGNAAV-LAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAV 129
L GN V AV L+ + ++V + + LA AD+ + + A+
Sbjct: 34 LAILGNVLVCWAVWLNS-NLQNVTNYFVVSLAAADIAVGVLAIPFAI 79
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics,
PSI-2, protein structure initiative, AC technologies
center for gene to 3D structure; HET: ETQ MAL; 2.89A
{Homo sapiens}
Length = 481
Score = 59.4 bits (143), Expect = 6e-10
Identities = 39/185 (21%), Positives = 77/185 (41%), Gaps = 29/185 (15%)
Query: 148 GNAAV-LAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQ 206
GN V +AV R + ++ +L+ LA+ADL +A ++ + EV W
Sbjct: 55 GNGLVCMAVLKER-ALQTTTNYLVVSLAVADLLVATLVMPWVV----YLEVTGGV---WN 106
Query: 207 KGYG-CKVAGFVTVFASQLSIFTLGMITLERWYSIKRAL----YANKLTIHRTTYFILVG 261
C V + V SI+ L I+++R+ ++ + + + R I
Sbjct: 107 FSRICCDVFVTLDVMMCTASIWNLCAISIDRYTAVVMPVHYQHGTGQSSCRRVALMITAV 166
Query: 262 YVYASIMGALPMFGISSYSTTSICLPMDTRHLGSKIYVHTLLLFSSLV-----FAMICVC 316
+V A + +FG ++ ++C + + +V ++SS+V F + +
Sbjct: 167 WVLAFAVSCPLLFGFNTTGDPTVCS------ISNPDFV----IYSSVVSFYLPFGVTVLV 216
Query: 317 YFQIY 321
Y +IY
Sbjct: 217 YARIY 221
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide
receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A
2ksb_A
Length = 364
Score = 58.1 bits (141), Expect = 1e-09
Identities = 36/185 (19%), Positives = 76/185 (41%), Gaps = 18/185 (9%)
Query: 148 GNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQK 207
GN V+ + L+ ++V + + +LA A+ MA + ++ + +W
Sbjct: 49 GNVVVMWIILAHKRMRTVTNYFLVNLAFAEASMAAFNTVV--------NFTYAVHNEWYY 100
Query: 208 G-YGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANKLTIHRTTYFILVGYVYAS 266
G + CK F + A SI+++ + +R+ +I L +L+ T I V +V A
Sbjct: 101 GLFYCKFHNFFPIAAVFASIYSMTAVAFDRYMAIIHPLQP-RLSATATKVVICVIWVLAL 159
Query: 267 IMGALPMF---GISSYSTTSICL---PMDTRHLGSKIYVHTLLLFSSLV-FAMICVCYFQ 319
++ A P + + +C+ P + K+Y + + + +I Y
Sbjct: 160 LL-AFPQGYYSTTETMPSRVVCMIEWPEHPNKIYEKVYHICVTVLIYFLPLLVIGYAYTV 218
Query: 320 IYSSL 324
+ +L
Sbjct: 219 VGITL 223
Score = 30.8 bits (70), Expect = 0.81
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 88 GNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAF 122
GN V+ + L+ ++V + + +LA A+ MA
Sbjct: 49 GNVVVMWIILAHKRMRTVTNYFLVNLAFAEASMAA 83
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled
receptor, 7 transmembrane receptor, signal
protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A
{Mus musculus} PDB: 4ej4_A* 4djh_A*
Length = 464
Score = 58.5 bits (141), Expect = 1e-09
Identities = 37/182 (20%), Positives = 60/182 (32%), Gaps = 20/182 (10%)
Query: 148 GNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQK 207
GN V+ V + T K+ I +LA+AD L + W
Sbjct: 34 GNFLVMYVIVRYTKMKTATNIYIFNLALADALATSTLPFQS---------VNYLMGTWPF 84
Query: 208 GYG-CKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANKLTIHRTTYFILVGYVYAS 266
G CK+ + + SIFTL ++++R+ ++ + A R + V S
Sbjct: 85 GNILCKIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPVKALDFRTPRNAKIVNVCNWILS 144
Query: 267 IMGALPMF---GISSYSTTSICL-----PMDTRHLGSKIYVHTLLLFSSLVFAMICVCYF 318
LP+ + C P KI V + +I VCY
Sbjct: 145 SAIGLPVMFMATTKYRQGSIDCTLTFSHPTWYWENLLKICVFIFAFI--MPVLIITVCYG 202
Query: 319 QI 320
+
Sbjct: 203 LM 204
Score = 33.0 bits (75), Expect = 0.16
Identities = 13/46 (28%), Positives = 20/46 (43%)
Query: 84 LIFPGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAV 129
+ GN V+ V + T K+ I +LA+AD L +V
Sbjct: 30 VGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADALATSTLPFQSV 75
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein
engineering, GPCR network, PSI-biology, struct genomics,
membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A
{Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A*
3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Length = 447
Score = 56.2 bits (135), Expect = 7e-09
Identities = 37/189 (19%), Positives = 71/189 (37%), Gaps = 25/189 (13%)
Query: 148 GNAAV-LAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQ 206
GN V AV L+ + ++V + + LA AD+ + + AI + F A
Sbjct: 48 GNVLVCWAVWLNS-NLQNVTNYFVVSLAAADIAVGVLAIPFAI----TISTGFCAACHG- 101
Query: 207 KGYGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRAL-YANKLTIHRTTYFILVGYVYA 265
C + +Q SIF+L I ++R+ +I+ L Y +T R I + +V +
Sbjct: 102 ----CLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLS 157
Query: 266 SIMGALPMFG--------ISSYSTTSICLPMDTRHLGSKIYVHTLLLFSSLV-----FAM 312
+G PM G + + ++ ++ F+ +
Sbjct: 158 FAIGLTPMLGWNNCGQPKEGKNHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLL 217
Query: 313 ICVCYFQIY 321
+ Y +I+
Sbjct: 218 MLGVYLRIF 226
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor,
nanobody, G protein-coupled RE GPCR, signal
transduction, G protein signaling; HET: P0G; 3.20A
{Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A
Length = 514
Score = 56.5 bits (136), Expect = 7e-09
Identities = 37/191 (19%), Positives = 76/191 (39%), Gaps = 34/191 (17%)
Query: 148 GNAAV-LAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQ 206
GN V A+ ++V + I+ LA ADL M ++ + + F +
Sbjct: 199 GNVLVITAIAKFE-RLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFW--- 254
Query: 207 KGYGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRAL-YANKLTIHRTTYFILVGYVYA 265
C+ + V SI TL +I ++R+++I Y + LT ++ IL+ ++ +
Sbjct: 255 ----CEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVS 310
Query: 266 SIMGALPMF----------GISSYSTTSICLPMDTRHLGSKIYVHTLLLFSSLV-----F 310
+ LP+ I+ Y+ + C ++ Y + SS+V
Sbjct: 311 GLTSFLPIQMHWYRATHQEAINCYAEETCCDFFT-----NQAYA----IASSIVSFYVPL 361
Query: 311 AMICVCYFQIY 321
++ Y +++
Sbjct: 362 VIMVFVYSRVF 372
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G
protein-coupled receptor, GPCR, SI protein-antagonist
complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Length = 467
Score = 52.0 bits (124), Expect = 1e-07
Identities = 32/184 (17%), Positives = 68/184 (36%), Gaps = 23/184 (12%)
Query: 148 GNAAV-LAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQ 206
GN V +++ ++R ++V + + LA ADL + + + L +Y Y W
Sbjct: 40 GNILVMVSIKVNR-HLQTVNNYFLFSLACADLIIGVFSMNLYT-------LYTVIGY-WP 90
Query: 207 KGYG-CKVAGFVTVFASQLSIFTLGMITLERWYSIKRAL-YANKLTIHRTTYFILVGYVY 264
G C + + S S+ L +I+ +R++ + + L Y K T I +V
Sbjct: 91 LGPVVCDLWLALDYVVSNASVMNLLIISFDRYFCVTKPLTYPVKRTTKMAGMMIAAAWVL 150
Query: 265 ASIMGALPMFGISSYSTTSICLPMDT--RHLGSKIYVHTLLLFSSLV-----FAMICVCY 317
+ I+ A + + + + +++ ++ V Y
Sbjct: 151 SFILWAPAILFWQFIVGVRTVEDGECYIQFFSNAAVT----FGTAIAAFYLPVIIMTVLY 206
Query: 318 FQIY 321
+ I
Sbjct: 207 WHIS 210
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR
BETA1-adrenoceptor, stabilising mutat biased agonist;
HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A*
2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A*
2ycx_A* 2ycy_A* 2ycz_A*
Length = 315
Score = 50.5 bits (121), Expect = 3e-07
Identities = 30/187 (16%), Positives = 68/187 (36%), Gaps = 26/187 (13%)
Query: 148 GNAAV-LAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQ 206
GN V A+ ++ +++ I+ LA ADL + ++ + +
Sbjct: 28 GNVLVIAAIGSTQ-RLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFL--- 83
Query: 207 KGYGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRAL-YANKLTIHRTTYFILVGYVYA 265
C++ + V SI TL +I ++R+ +I Y + +T R I + +
Sbjct: 84 ----CELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAIS 139
Query: 266 SIMGALPMF----------GISSYSTTSICLPMDTRHLGSKIYVHTLLLFSSLV-FAMIC 314
+++ LP+ + Y C + ++ Y + S + ++
Sbjct: 140 ALVSFLPIMMHWWRDEDPQALKCYQDPGCCDFVT-----NRAYAIASSIISFYIPLLIMI 194
Query: 315 VCYFQIY 321
++Y
Sbjct: 195 FVALRVY 201
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics,
PSI-biology, membrane protein, GPCR NET GPCR, hydrolase;
HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Length = 452
Score = 50.5 bits (120), Expect = 5e-07
Identities = 34/181 (18%), Positives = 71/181 (39%), Gaps = 17/181 (9%)
Query: 148 GNAAV-LAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQ 206
N V AV R +V I L++ADL + ++ + I L ++
Sbjct: 25 LNLLVLYAVRSER-KLHTVGNLYIVSLSVADLIVGAVVMPMNILYLLMSKWSLGRPL--- 80
Query: 207 KGYGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRAL-YANKLTIHRTTYFILVGYVYA 265
C + AS SIF++ ++ ++R+ S+++ L Y T R + IL + +
Sbjct: 81 ----CLFWLSMDYVASTASIFSVFILCIDRYRSVQQPLRYLKYRTKTRASATILGAWFLS 136
Query: 266 SIMGALPMFGISSYSTTSICLPMDTRHLGSKIYVHTLLLFSSLV-----FAMICVCYFQI 320
+ +P+ G + + + D V + ++++ ++ Y +I
Sbjct: 137 FLW-VIPILGWNHFMQQTSVRREDKCETDF-YDVTWFKVMTAIINFYLPTLLMLWFYAKI 194
Query: 321 Y 321
Y
Sbjct: 195 Y 195
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion,
lipidic cubic phase, lipidic, mesophase, cholesterol,
membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo
sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A*
3pds_A*
Length = 500
Score = 49.3 bits (117), Expect = 1e-06
Identities = 37/191 (19%), Positives = 75/191 (39%), Gaps = 34/191 (17%)
Query: 148 GNAAV-LAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDWQ 206
GN V A+ ++V + I+ LA ADL M ++ + F +
Sbjct: 57 GNVLVITAIAKFE-RLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFW--- 112
Query: 207 KGYGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRAL-YANKLTIHRTTYFILVGYVYA 265
C+ + V SI TL +I ++R+++I Y + LT ++ IL+ ++ +
Sbjct: 113 ----CEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVS 168
Query: 266 SIMGALPMF----------GISSYSTTSICLPMDTRHLGSKIYVHTLLLFSSLV-----F 310
+ LP+ I+ Y+ + C ++ Y + SS+V
Sbjct: 169 GLTSFLPIQMHWYRATHQEAINCYAEETCCDFFT-----NQAYA----IASSIVSFYVPL 219
Query: 311 AMICVCYFQIY 321
++ Y +++
Sbjct: 220 VIMVFVYSRVF 230
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.3 bits (75), Expect = 0.14
Identities = 50/376 (13%), Positives = 92/376 (24%), Gaps = 140/376 (37%)
Query: 2 KMYANSLLDMKIVRTGLNHIPQFPVS--------NDLVMEVI-FLGYNNIKIIEGR-AFN 51
K Y N LL + V+ F +S V + + +I +
Sbjct: 241 KPYENCLLVLLNVQNA-KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 52 GSQ----ISKFV----SKIRPE-QKLNPR------------PSAYNTY--YNFTRL---- 84
+ + K++ + E NPR + ++ + N +L
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359
Query: 85 --------------------IFPGNAAVLAVTLSR---TSEKSVPRFLISHLAMADLC-- 119
+FP +A + + LS KS +++ L L
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419
Query: 120 ----MAFYL----LLLAVKDLQSTEV-------Y-FNYAYDWQKGNAAVLAVTLSRTSEK 163
+ L L VK + Y +D +
Sbjct: 420 QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDS---------------DDL 464
Query: 164 SVPR-------FLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAYDW--QK----GYG 210
P + HL + L V+ + + + QK
Sbjct: 465 IPPYLDQYFYSHIGHHLKNIEHPERMTLF---------RMVFLD--FRFLEQKIRHDSTA 513
Query: 211 CKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANKLTIHRTTYFILVGYVYASIMGA 270
+G + QL Y + + Y LV +I+
Sbjct: 514 WNASGSILNTLQQLK------------------FYKPYICDNDPKYERLVN----AILDF 551
Query: 271 LPMFGISSYSTTSICL 286
LP + + L
Sbjct: 552 LPKIEENLICSKYTDL 567
Score = 32.5 bits (73), Expect = 0.30
Identities = 34/226 (15%), Positives = 66/226 (29%), Gaps = 84/226 (37%)
Query: 183 YLLLLAIKDLQSTEVY-F-----NYAYDW---QKGYGCKVAGFVTV-FASQLS------- 225
L + Q V F Y + + +T + Q
Sbjct: 65 LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124
Query: 226 IFTLGMIT-LERWYSIKRALYANKLTIHRTTYFILVGYVYASIMGALPMFGISSYSTTSI 284
+F ++ L+ + +++AL +L + ++ G + G
Sbjct: 125 VFAKYNVSRLQPYLKLRQALL--ELRPAK--NVLIDG-----------VLGS-------- 161
Query: 285 CLPMDTRHLGSKIYVHTLLLFSSLV------FAMICVCYFQIY-SSLGNVLTAD------ 331
G K + + + + C F+I+ +L N + +
Sbjct: 162 ---------G-K---------TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML 202
Query: 332 --LLFLITG-ISSYSTTSICLPMDT--------RHLGSKIYVHTLL 366
LL+ I +S S S + + R L SK Y + LL
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.39
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 10/36 (27%)
Query: 128 AVKDLQST-EVYFNYAYDWQKGNAAVLAVTLSRTSE 162
A+K LQ++ ++ YA D +A LA+ T E
Sbjct: 21 ALKKLQASLKL---YADD----SAPALAI--KATME 47
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.6 bits (71), Expect = 0.59
Identities = 39/215 (18%), Positives = 66/215 (30%), Gaps = 79/215 (36%)
Query: 46 EGRA-----FNGSQ--ISKFVSKIRPEQKLNPRPSAYNTYYNFTRLIFPGNAAVLAVTLS 98
EG A F G Q + ++R L Y TY+ + +A L+ L
Sbjct: 151 EGNAQLVAIFGG-QGNTDDYFEELR---DL------YQTYHVLVGDLIKFSAETLS-ELI 199
Query: 99 RTSEKSVPRF-----LISHLAMAD-------LC-------------MAFYLLLLAVKDLQ 133
RT+ + F ++ L L +A Y++ +
Sbjct: 200 RTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFT 259
Query: 134 STEVYFNYAYDWQKGN---------AAVLAVTLSRTS-EKSVPR-----FLI---SHLAM 175
E+ + KG A +A T S S SV + F I + A
Sbjct: 260 PGEL-----RSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAY 314
Query: 176 ADLCMAFYLL-------------LLAIKDLQSTEV 197
+ + +L +L+I +L +V
Sbjct: 315 PNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQV 349
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex,
GPCR, graves' disea autoimmunity, receptor-autoantibody
complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB:
3g04_C*
Length = 239
Score = 30.0 bits (68), Expect = 1.2
Identities = 8/38 (21%), Positives = 15/38 (39%), Gaps = 4/38 (10%)
Query: 15 RTGLNHIPQFPVSNDLVMEVIFLGYNNIKIIEGRAFNG 52
+ IP P S + + L +++ I AF+
Sbjct: 20 CKDIQRIPSLPPS----TQTLKLIETHLRTIPSHAFSN 53
>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein;
NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A
Length = 32
Score = 26.6 bits (59), Expect = 1.5
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 225 SIFTLGMITLERWYSIKRAL-YANKLTIHR 253
SI L I+L+R++SI +A+ Y K T R
Sbjct: 3 SIVHLCAISLDRYWSITQAIEYNLKRTPRR 32
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics,
riken structural genomics/proteomics initiative, RSGI;
NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Length = 130
Score = 27.4 bits (60), Expect = 4.6
Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 104 SVPR-FLISHLAMADLCMAFYLLLLAVKDLQSTEVYFNYAYDWQKGNAAVL 153
+P+ H + ++ +LL +D+ F Y+Y W + VL
Sbjct: 30 VIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSY-WNSSQSYVL 79
>2h9a_A Carbon monoxide dehydrogenase corrinoid/iron- sulfur protein, gamma
subunit; heterodimer, beta-alpha-barrels,
oxidoreductase; HET: B12; 1.90A {Carboxydothermus
hydrogenoformans} PDB: 2ycl_A*
Length = 445
Score = 28.4 bits (63), Expect = 4.6
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 11/48 (22%)
Query: 47 GRAFNGSQISKFVSKIRPEQKLNPRPSAYNTYYNFTRLIFPGNAAVLA 94
F +I++F+ + +K+N R + I PG AVL+
Sbjct: 378 AGKFTPEKIAQFLKESGIAEKVNHR-----------KAILPGGVAVLS 414
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex,
leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A
{Homo sapiens} PDB: 1xwd_C*
Length = 350
Score = 28.3 bits (63), Expect = 5.3
Identities = 7/39 (17%), Positives = 16/39 (41%), Gaps = 5/39 (12%)
Query: 15 RTGLNHIPQ-FPVSNDLVMEVIFLGYNNIKIIEGRAFNG 52
+ + IP P + + +++I+ AF+G
Sbjct: 18 ESKVTEIPSDLPRN----AIELRFVLTKLRVIQKGAFSG 52
Score = 27.5 bits (61), Expect = 7.3
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 7 SLLDMKIVRTGLNHIPQFPVSNDLVMEVIFLGYNN-IKIIEGRAFNG 52
+L + I TG+ H+P + L ++ + N I IE +F G
Sbjct: 105 NLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG 151
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion,
synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 28.2 bits (63), Expect = 5.4
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 5/39 (12%)
Query: 15 RTGLNHIPQ-FPVSNDLVMEVIFLGYNNIKIIEGRAFNG 52
R L +P + ++ L N I+II+ +F
Sbjct: 52 RKNLREVPDGISTN----TRLLNLHENQIQIIKVNSFKH 86
>4djd_C C/Fe-SP, corrinoid/iron-sulfur protein large subunit; TIM barrel,
rossmann fold, B12-dependent methyltransferase; HET:
B12; 2.38A {Moorella thermoacetica} PDB: 4dje_C* 4djf_C*
Length = 446
Score = 28.0 bits (62), Expect = 5.9
Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 11/48 (22%)
Query: 47 GRAFNGSQISKFVSKIRPEQKLNPRPSAYNTYYNFTRLIFPGNAAVLA 94
F +I+ + K+ + K+ R+I PG AVL
Sbjct: 379 DGKFEAEKIAAVMKKVDLDNKVKRH-----------RIIIPGAVAVLK 415
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 27.8 bits (62), Expect = 7.0
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
Query: 15 RTGLNHIPQ-FPVSNDLVMEVIFLGYNNIKIIEGRAFNG 52
R GL+ +PQ P + + L NNI++I+ F
Sbjct: 63 RRGLSEVPQGIPSN----TRYLNLMENNIQMIQADTFRH 97
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.328 0.139 0.415
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,611,849
Number of extensions: 319666
Number of successful extensions: 804
Number of sequences better than 10.0: 1
Number of HSP's gapped: 774
Number of HSP's successfully gapped: 59
Length of query: 387
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 292
Effective length of database: 4,049,298
Effective search space: 1182395016
Effective search space used: 1182395016
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 58 (26.6 bits)