RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11830
         (387 letters)



>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
          Length = 348

 Score = 38.4 bits (88), Expect = 0.001
 Identities = 29/267 (10%), Positives = 71/267 (26%), Gaps = 18/267 (6%)

Query: 84  LIFPGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAVKDLQSTEVYFNYAY 143
           L FP N   L VT+     ++   +++ +LA+ADL M F      +         F    
Sbjct: 50  LGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTG 109

Query: 144 DWQKGNAAVLAVTLSRTSEKSVPRFLISHLAMADLCMAFYLLLLAIKDLQSTEVYFNYAY 203
              +G  A L   ++  S                  +A    ++  K + +     N+A 
Sbjct: 110 CNLEGFFATLGGEIALWSLV---------------VLAIERYVVVCKPMSNFRFGENHAI 154

Query: 204 DWQKGYGCKVAGFVTVFASQLSIFTLGMITLERWYSIKRALYANKLTIHRTTYFILVGYV 263
                                S +    +                        F++   +
Sbjct: 155 MGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFII 214

Query: 264 YASIMGALPMFGISSYSTTSICLPMDTRHLGSKIYVHTLLLFSSLVFAMICVCYFQI--- 320
              ++       + +    +           ++  V  +++   + F +  + Y  +   
Sbjct: 215 PLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFY 274

Query: 321 YSSLGNVLTADLLFLITGISSYSTTSI 347
             +        +   I    + ++   
Sbjct: 275 IFTHQGSDFGPIFMTIPAFFAKTSAVY 301


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.139    0.415 

Gapped
Lambda     K      H
   0.267   0.0544    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,350,750
Number of extensions: 58430
Number of successful extensions: 109
Number of sequences better than 10.0: 1
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 3
Length of query: 387
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 300
Effective length of database: 1,213,086
Effective search space: 363925800
Effective search space used: 363925800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 54 (25.0 bits)