BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11832
(494 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1J8F|A Chain A, Human Sirt2 Histone Deacetylase
Length = 323
Score = 242 bits (618), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 121/223 (54%), Positives = 145/223 (65%), Gaps = 32/223 (14%)
Query: 4 AAGIPDFRSPGSGLYDNLEKYKLPHPMAIFELDYFKHRPEAFYTLAKELYPGSFKPTPCH 63
+AGIPDFRSP +GLYDNLEKY LP+P AIFE+ YFK PE F+ LAKELYPG FK
Sbjct: 57 SAGIPDFRSPSTGLYDNLEKYHLPYPEAIFEISYFKKHPEPFFALAKELYPGQFK----- 111
Query: 64 YFXXXXXXXXXXXRHFTQVYWGSFKPTPCHYFXXXXXXXXXXXRHFTQNIDNLERIAGLP 123
PT CHYF R +TQNID LERIAGL
Sbjct: 112 -------------------------PTICHYFMRLLKDKGLLLRCYTQNIDTLERIAGLE 146
Query: 124 DDKLVEAHGSFHTSHCLT--CRKDYSVAWMKERIFAEVIPTCEKCNGLVKPDIVFFGENL 181
+ LVEAHG+F+TSHC++ CR +Y ++WMKE+IF+EV P CE C LVKPDIVFFGE+L
Sbjct: 147 QEDLVEAHGTFYTSHCVSASCRHEYPLSWMKEKIFSEVTPKCEDCQSLVKPDIVFFGESL 206
Query: 182 PSRYFHRVDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPK 224
P+R+F + DF K DLLL+MGTSL VQPF SL+ K + P+
Sbjct: 207 PARFFSCMQSDFLKVDLLLVMGTSLQVQPFASLISKAPLSTPR 249
Score = 88.6 bits (218), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 67/188 (35%), Positives = 89/188 (47%), Gaps = 34/188 (18%)
Query: 243 LVDKTNIRGSDSDNIDNLERIAGLPDDKLVEAHGSFHTSHCL--TCRKDYSVAWMKE--- 297
L DK + + NID LERIAGL + LVEAHG+F+TSHC+ +CR +Y ++WMKE
Sbjct: 122 LKDKGLLLRCYTQNIDTLERIAGLEQEDLVEAHGTFYTSHCVSASCRHEYPLSWMKEKIF 181
Query: 298 GNLLGRMGITLGLHAGGL----SSIPGGAEVFSALCLE--------------------FG 333
+ + L + S+P A FS C++ F
Sbjct: 182 SEVTPKCEDCQSLVKPDIVFFGESLP--ARFFS--CMQSDFLKVDLLLVMGTSLQVQPFA 237
Query: 334 VHSASAPPHCPRLLINKEKVGVGSRNPXXXXXXXXXXXXFDNENNVRDVFLEGDCDSGCQ 393
+ AP PRLLINKEK G S FD++ RDV G+CD GC
Sbjct: 238 SLISKAPLSTPRLLINKEKAG-QSDPFLGMIMGLGGGMDFDSKKAYRDVAWLGECDQGCL 296
Query: 394 KLADMLGW 401
LA++LGW
Sbjct: 297 ALAELLGW 304
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 23/33 (69%)
Query: 461 FDNENNVRDVFLEGDCDSGCQKLADMLGWGKDI 493
FD++ RDV G+CD GC LA++LGW K++
Sbjct: 276 FDSKKAYRDVAWLGECDQGCLALAELLGWKKEL 308
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 417 FDNENNVRDVFLEGDCDSGCQKLADMLGW 445
FD++ RDV G+CD GC LA++LGW
Sbjct: 276 FDSKKAYRDVAWLGECDQGCLALAELLGW 304
>pdb|1J8F|C Chain C, Human Sirt2 Histone Deacetylase
pdb|1J8F|B Chain B, Human Sirt2 Histone Deacetylase
Length = 323
Score = 242 bits (617), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 121/223 (54%), Positives = 145/223 (65%), Gaps = 32/223 (14%)
Query: 4 AAGIPDFRSPGSGLYDNLEKYKLPHPMAIFELDYFKHRPEAFYTLAKELYPGSFKPTPCH 63
+AGIPDFRSP +GLYDNLEKY LP+P AIFE+ YFK PE F+ LAKELYPG FK
Sbjct: 57 SAGIPDFRSPSTGLYDNLEKYHLPYPEAIFEISYFKKHPEPFFALAKELYPGQFK----- 111
Query: 64 YFXXXXXXXXXXXRHFTQVYWGSFKPTPCHYFXXXXXXXXXXXRHFTQNIDNLERIAGLP 123
PT CHYF R +TQNID LERIAGL
Sbjct: 112 -------------------------PTICHYFMRLLKDKGLLLRCYTQNIDTLERIAGLE 146
Query: 124 DDKLVEAHGSFHTSHCLT--CRKDYSVAWMKERIFAEVIPTCEKCNGLVKPDIVFFGENL 181
+ LVEAHG+F+TSHC++ CR +Y ++WMKE+IF+EV P CE C LVKPDIVFFGE+L
Sbjct: 147 QEDLVEAHGTFYTSHCVSASCRHEYPLSWMKEKIFSEVTPKCEDCQSLVKPDIVFFGESL 206
Query: 182 PSRYFHRVDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPK 224
P+R+F + DF K DLLL+MGTSL VQPF SL+ K + P+
Sbjct: 207 PARFFSCMQSDFLKVDLLLVMGTSLQVQPFASLISKAPLSTPR 249
Score = 88.6 bits (218), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 90/194 (46%), Gaps = 46/194 (23%)
Query: 243 LVDKTNIRGSDSDNIDNLERIAGLPDDKLVEAHGSFHTSHCL--TCRKDYSVAWMKEG-- 298
L DK + + NID LERIAGL + LVEAHG+F+TSHC+ +CR +Y ++WMKE
Sbjct: 122 LKDKGLLLRCYTQNIDTLERIAGLEQEDLVEAHGTFYTSHCVSASCRHEYPLSWMKEKIF 181
Query: 299 -----------NLLGRMGITLGLHAGGLSSIPGGAEVFSALCLE---------------- 331
+L+ + G S+P A FS C++
Sbjct: 182 SEVTPKCEDCQSLVKPDIVFFG------ESLP--ARFFS--CMQSDFLKVDLLLVMGTSL 231
Query: 332 ----FGVHSASAPPHCPRLLINKEKVGVGSRNPXXXXXXXXXXXXFDNENNVRDVFLEGD 387
F + AP PRLLINKEK G S FD++ RDV G+
Sbjct: 232 QVQPFASLISKAPLSTPRLLINKEKAG-QSDPFLGMIMGLGGGMDFDSKKAYRDVAWLGE 290
Query: 388 CDSGCQKLADMLGW 401
CD GC LA++LGW
Sbjct: 291 CDQGCLALAELLGW 304
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 23/33 (69%)
Query: 461 FDNENNVRDVFLEGDCDSGCQKLADMLGWGKDI 493
FD++ RDV G+CD GC LA++LGW K++
Sbjct: 276 FDSKKAYRDVAWLGECDQGCLALAELLGWKKEL 308
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 417 FDNENNVRDVFLEGDCDSGCQKLADMLGW 445
FD++ RDV G+CD GC LA++LGW
Sbjct: 276 FDSKKAYRDVAWLGECDQGCLALAELLGW 304
>pdb|3GLR|A Chain A, Crystal Structure Of Human Sirt3 With Acetyl-Lysine Acecs2
Peptide
pdb|3GLS|A Chain A, Crystal Structure Of Human Sirt3
pdb|3GLS|B Chain B, Crystal Structure Of Human Sirt3
pdb|3GLS|C Chain C, Crystal Structure Of Human Sirt3
pdb|3GLS|D Chain D, Crystal Structure Of Human Sirt3
pdb|3GLS|E Chain E, Crystal Structure Of Human Sirt3
pdb|3GLS|F Chain F, Crystal Structure Of Human Sirt3
pdb|3GLT|A Chain A, Crystal Structure Of Human Sirt3 With Adpr Bound To The
Acecs2 Peptide Containing A Thioacetyl Lysine
pdb|3GLU|A Chain A, Crystal Structure Of Human Sirt3 With Acecs2 Peptide
Length = 285
Score = 200 bits (509), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 103/220 (46%), Positives = 133/220 (60%), Gaps = 31/220 (14%)
Query: 5 AGIPDFRSPGSGLYDNLEKYKLPHPMAIFELDYFKHRPEAFYTLAKELYPGSFKPTPCHY 64
+GIPDFRSPGSGLY NL++Y LP+P AIFEL +F H P+ F+TLAKELYPG++K
Sbjct: 38 SGIPDFRSPGSGLYSNLQQYDLPYPEAIFELPFFFHNPKPFFTLAKELYPGNYK------ 91
Query: 65 FXXXXXXXXXXXRHFTQVYWGSFKPTPCHYFXXXXXXXXXXXRHFTQNIDNLERIAGLPD 124
P HYF R +TQNID LER++G+P
Sbjct: 92 ------------------------PNVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPA 127
Query: 125 DKLVEAHGSFHTSHCLTCRKDYSVAWMKERIFAEVIPTCEKCNGLVKPDIVFFGENLPSR 184
KLVEAHG+F ++ C C++ + ++ + A+ +P C C G+VKPDIVFFGE LP R
Sbjct: 128 SKLVEAHGTFASATCTVCQRPFPGEDIRADVMADRVPRCPVCTGVVKPDIVFFGEPLPQR 187
Query: 185 YFHRVDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPK 224
+ V VDFP ADLLLI+GTSL V+PF SL + V P+
Sbjct: 188 FLLHV-VDFPMADLLLILGTSLEVEPFASLTEAVRSSVPR 226
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 72/170 (42%), Gaps = 39/170 (22%)
Query: 254 SDNIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDYSVAWMKEGNLLGRM-------GI 306
+ NID LER++G+P KLVEAHG+F ++ C C++ + ++ + R+ G+
Sbjct: 113 TQNIDGLERVSGIPASKLVEAHGTFASATCTVCQRPFPGEDIRADVMADRVPRCPVCTGV 172
Query: 307 T--------------LGLHAGGLSSIPGGAEVFSALCLE-FGVHSASAPPHCPRLLINKE 351
LH + ++L +E F + + PRLLIN++
Sbjct: 173 VKPDIVFFGEPLPQRFLLHVVDFPMADLLLILGTSLEVEPFASLTEAVRSSVPRLLINRD 232
Query: 352 KVGVGSRNPXXXXXXXXXXXXFDNENNVRDVFLEGDCDSGCQKLADMLGW 401
VG + +P RDV GD G + L ++LGW
Sbjct: 233 LVGPLAWHPRS-----------------RDVAQLGDVVHGVESLVELLGW 265
>pdb|4FVT|A Chain A, Human Sirt3 Bound To Ac-Acs Peptide And Carba-Nad
Length = 274
Score = 200 bits (509), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 103/220 (46%), Positives = 133/220 (60%), Gaps = 31/220 (14%)
Query: 5 AGIPDFRSPGSGLYDNLEKYKLPHPMAIFELDYFKHRPEAFYTLAKELYPGSFKPTPCHY 64
+GIPDFRSPGSGLY NL++Y LP+P AIFEL +F H P+ F+TLAKELYPG++K
Sbjct: 31 SGIPDFRSPGSGLYSNLQQYDLPYPEAIFELPFFFHNPKPFFTLAKELYPGNYK------ 84
Query: 65 FXXXXXXXXXXXRHFTQVYWGSFKPTPCHYFXXXXXXXXXXXRHFTQNIDNLERIAGLPD 124
P HYF R +TQNID LER++G+P
Sbjct: 85 ------------------------PNVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPA 120
Query: 125 DKLVEAHGSFHTSHCLTCRKDYSVAWMKERIFAEVIPTCEKCNGLVKPDIVFFGENLPSR 184
KLVEAHG+F ++ C C++ + ++ + A+ +P C C G+VKPDIVFFGE LP R
Sbjct: 121 SKLVEAHGTFASATCTVCQRPFPGEDIRADVMADRVPRCPVCTGVVKPDIVFFGEPLPQR 180
Query: 185 YFHRVDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPK 224
+ V VDFP ADLLLI+GTSL V+PF SL + V P+
Sbjct: 181 FLLHV-VDFPMADLLLILGTSLEVEPFASLTEAVRSSVPR 219
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 72/170 (42%), Gaps = 39/170 (22%)
Query: 254 SDNIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDYSVAWMKEGNLLGRM-------GI 306
+ NID LER++G+P KLVEAHG+F ++ C C++ + ++ + R+ G+
Sbjct: 106 TQNIDGLERVSGIPASKLVEAHGTFASATCTVCQRPFPGEDIRADVMADRVPRCPVCTGV 165
Query: 307 T--------------LGLHAGGLSSIPGGAEVFSALCLE-FGVHSASAPPHCPRLLINKE 351
LH + ++L +E F + + PRLLIN++
Sbjct: 166 VKPDIVFFGEPLPQRFLLHVVDFPMADLLLILGTSLEVEPFASLTEAVRSSVPRLLINRD 225
Query: 352 KVGVGSRNPXXXXXXXXXXXXFDNENNVRDVFLEGDCDSGCQKLADMLGW 401
VG + +P RDV GD G + L ++LGW
Sbjct: 226 LVGPLAWHPRS-----------------RDVAQLGDVVHGVESLVELLGW 258
>pdb|4HD8|A Chain A, Crystal Structure Of Human Sirt3 In Complex With
Fluor-de-lys Peptide And Piceatannol
Length = 284
Score = 200 bits (509), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 103/220 (46%), Positives = 133/220 (60%), Gaps = 31/220 (14%)
Query: 5 AGIPDFRSPGSGLYDNLEKYKLPHPMAIFELDYFKHRPEAFYTLAKELYPGSFKPTPCHY 64
+GIPDFRSPGSGLY NL++Y LP+P AIFEL +F H P+ F+TLAKELYPG++K
Sbjct: 37 SGIPDFRSPGSGLYSNLQQYDLPYPEAIFELPFFFHNPKPFFTLAKELYPGNYK------ 90
Query: 65 FXXXXXXXXXXXRHFTQVYWGSFKPTPCHYFXXXXXXXXXXXRHFTQNIDNLERIAGLPD 124
P HYF R +TQNID LER++G+P
Sbjct: 91 ------------------------PNVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPA 126
Query: 125 DKLVEAHGSFHTSHCLTCRKDYSVAWMKERIFAEVIPTCEKCNGLVKPDIVFFGENLPSR 184
KLVEAHG+F ++ C C++ + ++ + A+ +P C C G+VKPDIVFFGE LP R
Sbjct: 127 SKLVEAHGTFASATCTVCQRPFPGEDIRADVMADRVPRCPVCTGVVKPDIVFFGEPLPQR 186
Query: 185 YFHRVDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPK 224
+ V VDFP ADLLLI+GTSL V+PF SL + V P+
Sbjct: 187 FLLHV-VDFPMADLLLILGTSLEVEPFASLTEAVRSSVPR 225
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 72/170 (42%), Gaps = 39/170 (22%)
Query: 254 SDNIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDYSVAWMKEGNLLGRM-------GI 306
+ NID LER++G+P KLVEAHG+F ++ C C++ + ++ + R+ G+
Sbjct: 112 TQNIDGLERVSGIPASKLVEAHGTFASATCTVCQRPFPGEDIRADVMADRVPRCPVCTGV 171
Query: 307 T--------------LGLHAGGLSSIPGGAEVFSALCLE-FGVHSASAPPHCPRLLINKE 351
LH + ++L +E F + + PRLLIN++
Sbjct: 172 VKPDIVFFGEPLPQRFLLHVVDFPMADLLLILGTSLEVEPFASLTEAVRSSVPRLLINRD 231
Query: 352 KVGVGSRNPXXXXXXXXXXXXFDNENNVRDVFLEGDCDSGCQKLADMLGW 401
VG + +P RDV GD G + L ++LGW
Sbjct: 232 LVGPLAWHP-----------------RSRDVAQLGDVVHGVESLVELLGW 264
>pdb|1Q14|A Chain A, Structure And Autoregulation Of The Yeast Hst2 Homolog Of
Sir2
Length = 361
Score = 155 bits (391), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 89/229 (38%), Positives = 118/229 (51%), Gaps = 46/229 (20%)
Query: 6 GIPDFRSPGSGLYDNLEKYKLPHPMAIFELDYFKHRPEAFYTLAKELYPGSFKPTPCHYF 65
GIPDFRSPG+GLY NL + KLP+P A+F++D+F+ P FYTLAKELYPG+F+
Sbjct: 44 GIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTLAKELYPGNFR------- 96
Query: 66 XXXXXXXXXXXRHFTQVYWGSFKPTPCHYFXXXXXXXXXXXRHFTQNIDNLERIAGLPDD 125
P+ HY R +TQNID LER AG+ DD
Sbjct: 97 -----------------------PSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDD 133
Query: 126 KLVEAHGSFHTSHCLTCRKDYSVAWMKERIFAEVIP---TCEKCNGLVKPDIVFFGENLP 182
++EAHGSF HC+ C K Y K ++ I C+ C LVKP IVFFGE+LP
Sbjct: 134 LIIEAHGSFAHCHCIGCGKVYPPQVFKSKLAEHPIKDFVKCDVCGELVKPAIVFFGEDLP 193
Query: 183 SRYFH-------------RVDVDFPKADLLLIMGTSLVVQPFCSLVDKV 218
+ P+ L++++GTSL V PF SL +++
Sbjct: 194 DSFSETWLNDSEWLREKITTSGKHPQQPLVIVVGTSLAVYPFASLPEEI 242
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 30/46 (65%)
Query: 245 DKTNIRGSDSDNIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDY 290
DK ++ + NID LER AG+ DD ++EAHGSF HC+ C K Y
Sbjct: 109 DKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGCGKVY 154
>pdb|2OD7|A Chain A, Crystal Structure Of Yhst2 Bound To The Intermediate
Analogue Adp-Hpd, And And Aceylated H4 Peptide
pdb|2OD9|A Chain A, Structural Basis For Nicotinamide Inhibition And Base
Exchange In Sir2 Enzymes
pdb|2QQF|A Chain A, Hst2 Bound To Adp-Hpd And Acetylated Histone H4
pdb|2QQG|A Chain A, Hst2 Bound To Adp-hpd, Acetyllated Histone H4 And
Nicotinamide
Length = 308
Score = 154 bits (388), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 89/229 (38%), Positives = 118/229 (51%), Gaps = 46/229 (20%)
Query: 6 GIPDFRSPGSGLYDNLEKYKLPHPMAIFELDYFKHRPEAFYTLAKELYPGSFKPTPCHYF 65
GIPDFRSPG+GLY NL + KLP+P A+F++D+F+ P FYTLAKELYPG+F+
Sbjct: 54 GIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTLAKELYPGNFR------- 106
Query: 66 XXXXXXXXXXXRHFTQVYWGSFKPTPCHYFXXXXXXXXXXXRHFTQNIDNLERIAGLPDD 125
P+ HY R +TQNID LER AG+ DD
Sbjct: 107 -----------------------PSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDD 143
Query: 126 KLVEAHGSFHTSHCLTCRKDYSVAWMKERIFAEVIP---TCEKCNGLVKPDIVFFGENLP 182
++EAHGSF HC+ C K Y K ++ I C+ C LVKP IVFFGE+LP
Sbjct: 144 LIIEAHGSFAHCHCIGCGKVYPPQVFKSKLAEHPIKDFVKCDVCGELVKPAIVFFGEDLP 203
Query: 183 SRYFH-------------RVDVDFPKADLLLIMGTSLVVQPFCSLVDKV 218
+ P+ L++++GTSL V PF SL +++
Sbjct: 204 DSFSETWLNDSEWLREKITTSGKHPQQPLVIVVGTSLAVYPFASLPEEI 252
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 30/46 (65%)
Query: 245 DKTNIRGSDSDNIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDY 290
DK ++ + NID LER AG+ DD ++EAHGSF HC+ C K Y
Sbjct: 119 DKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGCGKVY 164
>pdb|1SZC|A Chain A, Structural Basis For Nicotinamide Cleavage And Adp-Ribose
Transfer By Nad+-Dependent Sir2 HistonePROTEIN
DEACETYLASES
pdb|1SZD|A Chain A, Structural Basis For Nicotinamide Cleavage And Adp-Ribose
Transfer By Nad+-Dependent Sir2 HistonePROTEIN
DEACETYLASES
Length = 297
Score = 153 bits (387), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 89/229 (38%), Positives = 118/229 (51%), Gaps = 46/229 (20%)
Query: 6 GIPDFRSPGSGLYDNLEKYKLPHPMAIFELDYFKHRPEAFYTLAKELYPGSFKPTPCHYF 65
GIPDFRSPG+GLY NL + KLP+P A+F++D+F+ P FYTLAKELYPG+F+
Sbjct: 43 GIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTLAKELYPGNFR------- 95
Query: 66 XXXXXXXXXXXRHFTQVYWGSFKPTPCHYFXXXXXXXXXXXRHFTQNIDNLERIAGLPDD 125
P+ HY R +TQNID LER AG+ DD
Sbjct: 96 -----------------------PSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDD 132
Query: 126 KLVEAHGSFHTSHCLTCRKDYSVAWMKERIFAEVIP---TCEKCNGLVKPDIVFFGENLP 182
++EAHGSF HC+ C K Y K ++ I C+ C LVKP IVFFGE+LP
Sbjct: 133 LIIEAHGSFAHCHCIGCGKVYPPQVFKSKLAEHPIKDFVKCDVCGELVKPAIVFFGEDLP 192
Query: 183 SRYFH-------------RVDVDFPKADLLLIMGTSLVVQPFCSLVDKV 218
+ P+ L++++GTSL V PF SL +++
Sbjct: 193 DSFSETWLNDSEWLREKITTSGKHPQQPLVIVVGTSLAVYPFASLPEEI 241
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 30/46 (65%)
Query: 245 DKTNIRGSDSDNIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDY 290
DK ++ + NID LER AG+ DD ++EAHGSF HC+ C K Y
Sbjct: 108 DKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGCGKVY 153
>pdb|1Q17|A Chain A, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary
Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide
pdb|1Q17|B Chain B, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary
Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide
pdb|1Q17|C Chain C, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary
Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide
Length = 300
Score = 153 bits (387), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 89/231 (38%), Positives = 119/231 (51%), Gaps = 46/231 (19%)
Query: 4 AAGIPDFRSPGSGLYDNLEKYKLPHPMAIFELDYFKHRPEAFYTLAKELYPGSFKPTPCH 63
+ GIPDFRSPG+GLY NL + KLP+P A+F++D+F+ P FYTLAKELYPG+F+
Sbjct: 44 SCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTLAKELYPGNFR----- 98
Query: 64 YFXXXXXXXXXXXRHFTQVYWGSFKPTPCHYFXXXXXXXXXXXRHFTQNIDNLERIAGLP 123
P+ HY R +TQNID LER AG+
Sbjct: 99 -------------------------PSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVK 133
Query: 124 DDKLVEAHGSFHTSHCLTCRKDYSVAWMKERIFAEVIP---TCEKCNGLVKPDIVFFGEN 180
DD ++EAHGSF HC+ C K Y K ++ I C+ C LVKP IVFFGE+
Sbjct: 134 DDLIIEAHGSFAHCHCIGCGKVYPPQVFKSKLAEHPIKDFVKCDVCGELVKPAIVFFGED 193
Query: 181 LPSRYFH-------------RVDVDFPKADLLLIMGTSLVVQPFCSLVDKV 218
LP + P+ L++++GTSL V PF SL +++
Sbjct: 194 LPDSFSETWLNDSEWLREKITTSGKHPQQPLVIVVGTSLAVYPFASLPEEI 244
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 30/46 (65%)
Query: 245 DKTNIRGSDSDNIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDY 290
DK ++ + NID LER AG+ DD ++EAHGSF HC+ C K Y
Sbjct: 111 DKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGCGKVY 156
>pdb|1Q1A|A Chain A, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary
Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide
Length = 289
Score = 153 bits (386), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 89/231 (38%), Positives = 119/231 (51%), Gaps = 46/231 (19%)
Query: 4 AAGIPDFRSPGSGLYDNLEKYKLPHPMAIFELDYFKHRPEAFYTLAKELYPGSFKPTPCH 63
+ GIPDFRSPG+GLY NL + KLP+P A+F++D+F+ P FYTLAKELYPG+F+
Sbjct: 34 SCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTLAKELYPGNFR----- 88
Query: 64 YFXXXXXXXXXXXRHFTQVYWGSFKPTPCHYFXXXXXXXXXXXRHFTQNIDNLERIAGLP 123
P+ HY R +TQNID LER AG+
Sbjct: 89 -------------------------PSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVK 123
Query: 124 DDKLVEAHGSFHTSHCLTCRKDYSVAWMKERIFAEVIP---TCEKCNGLVKPDIVFFGEN 180
DD ++EAHGSF HC+ C K Y K ++ I C+ C LVKP IVFFGE+
Sbjct: 124 DDLIIEAHGSFAHCHCIGCGKVYPPQVFKSKLAEHPIKDFVKCDVCGELVKPAIVFFGED 183
Query: 181 LPSRYFH-------------RVDVDFPKADLLLIMGTSLVVQPFCSLVDKV 218
LP + P+ L++++GTSL V PF SL +++
Sbjct: 184 LPDSFSETWLNDSEWLREKITTSGKHPQQPLVIVVGTSLAVYPFASLPEEI 234
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 30/46 (65%)
Query: 245 DKTNIRGSDSDNIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDY 290
DK ++ + NID LER AG+ DD ++EAHGSF HC+ C K Y
Sbjct: 101 DKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGCGKVY 146
>pdb|2OD2|A Chain A, Crystal Structure Of Yhst2 I117f Mutant Bound To
Carba-Nad+ And An Acetylated H4 Peptide
Length = 308
Score = 151 bits (382), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 88/229 (38%), Positives = 117/229 (51%), Gaps = 46/229 (20%)
Query: 6 GIPDFRSPGSGLYDNLEKYKLPHPMAIFELDYFKHRPEAFYTLAKELYPGSFKPTPCHYF 65
GIPDFRSPG+GLY NL + KLP+P A+F++D+F+ P FYTLAKELYPG+F+
Sbjct: 54 GIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTLAKELYPGNFR------- 106
Query: 66 XXXXXXXXXXXRHFTQVYWGSFKPTPCHYFXXXXXXXXXXXRHFTQNIDNLERIAGLPDD 125
P+ HY R +TQN D LER AG+ DD
Sbjct: 107 -----------------------PSKFHYLLKLFQDKDVLKRVYTQNFDTLERQAGVKDD 143
Query: 126 KLVEAHGSFHTSHCLTCRKDYSVAWMKERIFAEVIP---TCEKCNGLVKPDIVFFGENLP 182
++EAHGSF HC+ C K Y K ++ I C+ C LVKP IVFFGE+LP
Sbjct: 144 LIIEAHGSFAHCHCIGCGKVYPPQVFKSKLAEHPIKDFVKCDVCGELVKPAIVFFGEDLP 203
Query: 183 SRYFH-------------RVDVDFPKADLLLIMGTSLVVQPFCSLVDKV 218
+ P+ L++++GTSL V PF SL +++
Sbjct: 204 DSFSETWLNDSEWLREKITTSGKHPQQPLVIVVGTSLAVYPFASLPEEI 252
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 29/46 (63%)
Query: 245 DKTNIRGSDSDNIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDY 290
DK ++ + N D LER AG+ DD ++EAHGSF HC+ C K Y
Sbjct: 119 DKDVLKRVYTQNFDTLERQAGVKDDLIIEAHGSFAHCHCIGCGKVY 164
>pdb|4I5I|A Chain A, Crystal Structure Of The Sirt1 Catalytic Domain Bound To
Nad And An Ex527 Analog
pdb|4I5I|B Chain B, Crystal Structure Of The Sirt1 Catalytic Domain Bound To
Nad And An Ex527 Analog
Length = 287
Score = 134 bits (337), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 75/228 (32%), Positives = 119/228 (52%), Gaps = 40/228 (17%)
Query: 4 AAGIPDFRSPGSGLYDNL--EKYKLPHPMAIFELDYFKHRPEAFYTLAKELYPGSFKPTP 61
+ GIPDFRS G+Y L + LP P A+F+++YF+ P F+ AKE+YPG F
Sbjct: 30 SCGIPDFRS-RDGIYARLAVDFPDLPDPQAMFDIEYFRKDPRPFFKFAKEIYPGQF---- 84
Query: 62 CHYFXXXXXXXXXXXRHFTQVYWGSFKPTPCHYFXXXXXXXXXXXRHFTQNIDNLERIAG 121
+P+ CH F R++TQNID LE++AG
Sbjct: 85 --------------------------QPSLCHKFIALSDKEGKLLRNYTQNIDTLEQVAG 118
Query: 122 LPDDKLVEAHGSFHTSHCLTCRKDYSVAWMKERIFAEVIPTCEKCNG-----LVKPDIVF 176
+ ++++ HGSF T+ CL C+ ++ IF +V+P C +C ++KP+IVF
Sbjct: 119 I--QRIIQCHGSFATASCLICKYKVDCEAVRGDIFNQVVPRCPRCPADEPLAIMKPEIVF 176
Query: 177 FGENLPSRYFHRVDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPK 224
FGENLP ++ + D + DLL+++G+SL V+P + + + P+
Sbjct: 177 FGENLPEQFHRAMKYDKDEVDLLIVIGSSLKVRPVALIPSSIPHEVPQ 224
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Query: 240 FCSLVDKT-NIRGSDSDNIDNLERIAGLPDDKLVEAHGSFHTSHCLTCR 287
F +L DK + + + NID LE++AG+ ++++ HGSF T+ CL C+
Sbjct: 92 FIALSDKEGKLLRNYTQNIDTLEQVAGI--QRIIQCHGSFATASCLICK 138
>pdb|4IAO|A Chain A, Crystal Structure Of Sir2 C543s Mutant In Complex With Sid
Domain Of Sir4
pdb|4IAO|B Chain B, Crystal Structure Of Sir2 C543s Mutant In Complex With Sid
Domain Of Sir4
Length = 492
Score = 108 bits (270), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 77/261 (29%), Positives = 109/261 (41%), Gaps = 74/261 (28%)
Query: 4 AAGIPDFRSPGSGLYDNLEKYKLPHPMAIFELDYFKHRPEAFYTLAKELYPGSFKPTPCH 63
+ GIPDFRS G Y ++ L P +F + F H P FY +A + P
Sbjct: 198 SLGIPDFRS-SEGFYSKIKHLGLDDPQDVFNYNIFMHDPSVFYNIANMVLPPE------- 249
Query: 64 YFXXXXXXXXXXXRHFTQVYWGSFKPTPCHYFXXXXXXXXXXXRHFTQNIDNLERIAGLP 123
++Y +P H F R++TQNIDNLE AG+
Sbjct: 250 -----------------KIY------SPLHSFIKMLQMKGKLLRNYTQNIDNLESYAGIS 286
Query: 124 DDKLVEAHGSFHTSHCLTCRKDYSVAWMKERIFAEV----IPTCEKC------------- 166
DKLV+ HGSF T+ C+TC + ERIF ++ +P C C
Sbjct: 287 TDKLVQCHGSFATATCVTCHWNLP----GERIFNKIRNLELPLCPYCYKKRREYFPEGYN 342
Query: 167 ----------------------NGLVKPDIVFFGENLPSRYFHRVDVDFPKADLLLIMGT 204
G++KPDI FFGE LP+++ + D + DLL+ +GT
Sbjct: 343 NKVGVAASQGSMSERPPYILNSYGVLKPDITFFGEALPNKFHKSIREDILECDLLICIGT 402
Query: 205 SLVVQPFCSLVDKVDVDFPKA 225
SL V P +V+ V P+
Sbjct: 403 SLKVAPVSEIVNMVPSHVPQV 423
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 229 LIMGTSLVVQPFCSLVDKTNIRG----SDSDNIDNLERIAGLPDDKLVEAHGSFHTSHCL 284
+++ + P S + ++G + + NIDNLE AG+ DKLV+ HGSF T+ C+
Sbjct: 244 MVLPPEKIYSPLHSFIKMLQMKGKLLRNYTQNIDNLESYAGISTDKLVQCHGSFATATCV 303
Query: 285 TC 286
TC
Sbjct: 304 TC 305
>pdb|2HJH|A Chain A, Crystal Structure Of The Sir2 Deacetylase
pdb|2HJH|B Chain B, Crystal Structure Of The Sir2 Deacetylase
Length = 354
Score = 108 bits (269), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 79/261 (30%), Positives = 111/261 (42%), Gaps = 74/261 (28%)
Query: 4 AAGIPDFRSPGSGLYDNLEKYKLPHPMAIFELDYFKHRPEAFYTLAKELYPGSFKPTPCH 63
+ GIPDFRS G Y ++ L P +F + F H P FY +A + P
Sbjct: 60 SLGIPDFRS-SEGFYSKIKHLGLDDPQDVFNYNIFXHDPSVFYNIANXVLPPE------- 111
Query: 64 YFXXXXXXXXXXXRHFTQVYWGSFKPTPCHYFXXXXXXXXXXXRHFTQNIDNLERIAGLP 123
++Y +P H F R++TQNIDNLE AG+
Sbjct: 112 -----------------KIY------SPLHSFIKXLQXKGKLLRNYTQNIDNLESYAGIS 148
Query: 124 DDKLVEAHGSFHTSHCLTCRKDYSVAWMKERIFAEV----IPTCEKC------------- 166
DKLV+ HGSF T+ C+TC + ERIF ++ +P C C
Sbjct: 149 TDKLVQCHGSFATATCVTCHWNLP----GERIFNKIRNLELPLCPYCYKKRREYFPEGYN 204
Query: 167 ----------------------NGLVKPDIVFFGENLPSRYFHRVDVDFPKADLLLIMGT 204
G++KPDI FFGE LP+++ + D + DLL+ +GT
Sbjct: 205 NKVGVAASQGSXSERPPYILNSYGVLKPDITFFGEALPNKFHKSIREDILECDLLICIGT 264
Query: 205 SLVVQPFCSLVDKVDVDFPKA 225
SL V P +V+ V P+
Sbjct: 265 SLKVAPVSEIVNXVPSHVPQV 285
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Query: 236 VVQPFCSLVDKTNIRG----SDSDNIDNLERIAGLPDDKLVEAHGSFHTSHCLTC 286
+ P S + +G + + NIDNLE AG+ DKLV+ HGSF T+ C+TC
Sbjct: 113 IYSPLHSFIKXLQXKGKLLRNYTQNIDNLESYAGISTDKLVQCHGSFATATCVTC 167
>pdb|1YC5|A Chain A, Sir2-P53 Peptide-Nicotinamide
pdb|2H4F|A Chain A, Sir2-P53 Peptide-Nad+
pdb|2H4J|A Chain A, Sir2-Deacetylated Peptide (From Enzymatic Turnover In
Crystal)
pdb|2H2D|A Chain A, The Structural Basis For Sirtuin Substrate Affinity
pdb|2H2F|A Chain A, The Structural Basis For Sirtuin Substrate Affinity
pdb|2H2G|A Chain A, The Structural Basis Of Sirtuin Substrate Affinity
pdb|2H2H|A Chain A, The Structural Basis Of Sirtuin Substrate Specificity
pdb|2H2I|A Chain A, The Structural Basis Of Sirtuin Substrate Affinity
pdb|3D4B|A Chain A, Crystal Structure Of Sir2tm In Complex With Acetyl P53
Peptide And Dadme-Nad+
pdb|3D81|A Chain A, Sir2-S-Alkylamidate Complex Crystal Structure
pdb|3PDH|A Chain A, Structure Of Sir2tm Bound To A Propionylated Peptide
Length = 246
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 97/211 (45%), Gaps = 40/211 (18%)
Query: 5 AGIPDFRSPGSGLYDNLEKYKLPHPMAIFELDYFKHRPEAFYTLAKE-LYPGSFKPTPCH 63
+GIPDFR P +G+Y + +F++D+F PE FY AKE ++P
Sbjct: 28 SGIPDFRGP-NGIYKK-------YSQNVFDIDFFYSHPEEFYRFAKEGIFP--------- 70
Query: 64 YFXXXXXXXXXXXRHFTQVYWGSFKPTPCHYFXXXXXXXXXXXRHFTQNIDNLERIAGLP 123
KP H TQNID L + AG
Sbjct: 71 --------------------MLQAKPNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAG-- 108
Query: 124 DDKLVEAHGSFHTSHCLTCRKDYSVAWMKERIFAEVIPTCEKCNGLVKPDIVFFGENLPS 183
K++E HG+ +C+ C K Y+V + +++ + +P C+ CN L++P+IVFFGENLP
Sbjct: 109 SKKVIELHGNVEEYYCVRCEKKYTVEDVIKKLESSDVPLCDDCNSLIRPNIVFFGENLPQ 168
Query: 184 RYFHRVDVDFPKADLLLIMGTSLVVQPFCSL 214
+A L++++G+SLVV P L
Sbjct: 169 DALREAIGLSSRASLMIVLGSSLVVYPAAEL 199
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 240 FCSLVDKTNIRGSDSDNIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDYSV 292
L +K I + NID L + AG K++E HG+ +C+ C K Y+V
Sbjct: 83 LAKLEEKGLIEAVITQNIDRLHQRAG--SKKVIELHGNVEEYYCVRCEKKYTV 133
>pdb|2H4H|A Chain A, Sir2 H116y Mutant-P53 Peptide-Nad
Length = 246
Score = 102 bits (254), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 97/211 (45%), Gaps = 40/211 (18%)
Query: 5 AGIPDFRSPGSGLYDNLEKYKLPHPMAIFELDYFKHRPEAFYTLAKE-LYPGSFKPTPCH 63
+GIPDFR P +G+Y + +F++D+F PE FY AKE ++P
Sbjct: 28 SGIPDFRGP-NGIYKK-------YSQNVFDIDFFYSHPEEFYRFAKEGIFP--------- 70
Query: 64 YFXXXXXXXXXXXRHFTQVYWGSFKPTPCHYFXXXXXXXXXXXRHFTQNIDNLERIAGLP 123
KP H TQNID L + AG
Sbjct: 71 --------------------MLQAKPNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAG-- 108
Query: 124 DDKLVEAHGSFHTSHCLTCRKDYSVAWMKERIFAEVIPTCEKCNGLVKPDIVFFGENLPS 183
K++E +G+ +C+ C K Y+V + +++ + +P C+ CN L++P+IVFFGENLP
Sbjct: 109 SKKVIELYGNVEEYYCVRCEKKYTVEDVIKKLESSDVPLCDDCNSLIRPNIVFFGENLPQ 168
Query: 184 RYFHRVDVDFPKADLLLIMGTSLVVQPFCSL 214
+A L++++G+SLVV P L
Sbjct: 169 DALREAIGLSSRASLMIVLGSSLVVYPAAEL 199
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 240 FCSLVDKTNIRGSDSDNIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDYSV 292
L +K I + NID L + AG K++E +G+ +C+ C K Y+V
Sbjct: 83 LAKLEEKGLIEAVITQNIDRLHQRAG--SKKVIELYGNVEEYYCVRCEKKYTV 133
>pdb|2H59|A Chain A, Sir2 H116a-Deacetylated P53 Peptide-3'-O-Acetyl Adp Ribose
pdb|2H59|B Chain B, Sir2 H116a-Deacetylated P53 Peptide-3'-O-Acetyl Adp Ribose
pdb|3JR3|A Chain A, Sir2 Bound To Acetylated Peptide
Length = 246
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 96/211 (45%), Gaps = 40/211 (18%)
Query: 5 AGIPDFRSPGSGLYDNLEKYKLPHPMAIFELDYFKHRPEAFYTLAKE-LYPGSFKPTPCH 63
+GIPDFR P +G+Y + +F++D+F PE FY AKE ++P
Sbjct: 28 SGIPDFRGP-NGIYKK-------YSQNVFDIDFFYSHPEEFYRFAKEGIFP--------- 70
Query: 64 YFXXXXXXXXXXXRHFTQVYWGSFKPTPCHYFXXXXXXXXXXXRHFTQNIDNLERIAGLP 123
KP H TQNID L + AG
Sbjct: 71 --------------------MLQAKPNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAG-- 108
Query: 124 DDKLVEAHGSFHTSHCLTCRKDYSVAWMKERIFAEVIPTCEKCNGLVKPDIVFFGENLPS 183
K++E G+ +C+ C K Y+V + +++ + +P C+ CN L++P+IVFFGENLP
Sbjct: 109 SKKVIELAGNVEEYYCVRCEKKYTVEDVIKKLESSDVPLCDDCNSLIRPNIVFFGENLPQ 168
Query: 184 RYFHRVDVDFPKADLLLIMGTSLVVQPFCSL 214
+A L++++G+SLVV P L
Sbjct: 169 DALREAIGLSSRASLMIVLGSSLVVYPAAEL 199
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 240 FCSLVDKTNIRGSDSDNIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDYSV 292
L +K I + NID L + AG K++E G+ +C+ C K Y+V
Sbjct: 83 LAKLEEKGLIEAVITQNIDRLHQRAG--SKKVIELAGNVEEYYCVRCEKKYTV 133
>pdb|1MA3|A Chain A, Structure Of A Sir2 Enzyme Bound To An Acetylated P53
Peptide
pdb|1S7G|A Chain A, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|B Chain B, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|C Chain C, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|D Chain D, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|E Chain E, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1YC2|A Chain A, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|B Chain B, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|C Chain C, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|D Chain D, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|E Chain E, Sir2af2-Nad-Adpribose-Nicotinamide
Length = 253
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 80/211 (37%), Gaps = 39/211 (18%)
Query: 5 AGIPDFRSPGSGLYDNLEKYKLPHPMAIFELDYFKHRPEAFYTLAKELYPGSFKPTPCHY 64
+GIP FR GL+ + P + + FK P AF+ + E+ F
Sbjct: 30 SGIPTFRGE-DGLWRKYD------PEEVASISGFKRNPRAFWEFSMEMKDKLFA------ 76
Query: 65 FXXXXXXXXXXXRHFTQVYWGSFKPTPCHYFXXXXXXXXXXXRHFTQNIDNLERIAGLPD 124
+P P HY TQNID L + AG
Sbjct: 77 -----------------------EPNPAHYAIAELERMGIVKAVITQNIDMLHQRAG--S 111
Query: 125 DKLVEAHGSFHTSHCLTCRKDYSVAWMKERIFAEVIPTCEKCNGL-VKPDIVFFGENLPS 183
+++E HGS CL C + Y + E IP C KC VKP +V FGE LP
Sbjct: 112 RRVLELHGSMDKLDCLDCHETYDWSEFVEDFNKGEIPRCRKCGSYYVKPRVVLFGEPLPQ 171
Query: 184 RYFHRVDVDFPKADLLLIMGTSLVVQPFCSL 214
R + D +++G+SLVV P L
Sbjct: 172 RTLFEAIEEAKHCDAFMVVGSSLVVYPAAEL 202
>pdb|1M2J|A Chain A, Sir2 Homologue H80n Mutant-Adp Ribose Complex
Length = 249
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 56/106 (52%), Gaps = 5/106 (4%)
Query: 109 FTQNIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDYSVAWMKERIFAEVIPTCEKCNG 168
TQN+D+L AG ++ HGS C +C + V + +P C+KC
Sbjct: 96 ITQNVDDLHERAG--SRNVIHLHGSLRVVRCTSCNNSFEVESAPK---IPPLPKCDKCGS 150
Query: 169 LVKPDIVFFGENLPSRYFHRVDVDFPKADLLLIMGTSLVVQPFCSL 214
L++P +V+FGE LP R + +AD++++ GTS VVQP SL
Sbjct: 151 LLRPGVVWFGEMLPPDVLDRAMREVERADVIIVAGTSAVVQPAASL 196
>pdb|1M2H|A Chain A, Sir2 Homologue S24a Mutant-adp Ribose Complex
Length = 249
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 56/106 (52%), Gaps = 5/106 (4%)
Query: 109 FTQNIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDYSVAWMKERIFAEVIPTCEKCNG 168
TQN+D+L AG ++ HGS C +C + V + +P C+KC
Sbjct: 96 ITQNVDDLHERAG--SRNVIHLHGSLRVVRCTSCNNSFEVESAPK---IPPLPKCDKCGS 150
Query: 169 LVKPDIVFFGENLPSRYFHRVDVDFPKADLLLIMGTSLVVQPFCSL 214
L++P +V+FGE LP R + +AD++++ GTS VVQP SL
Sbjct: 151 LLRPGVVWFGEMLPPDVLDRAMREVERADVIIVAGTSAVVQPAASL 196
>pdb|1M2G|A Chain A, Sir2 Homologue-Adp Ribose Complex
Length = 249
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 56/106 (52%), Gaps = 5/106 (4%)
Query: 109 FTQNIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDYSVAWMKERIFAEVIPTCEKCNG 168
TQN+D+L AG ++ HGS C +C + V + +P C+KC
Sbjct: 96 ITQNVDDLHERAG--SRNVIHLHGSLRVVRCTSCNNSFEVESAPK---IPPLPKCDKCGS 150
Query: 169 LVKPDIVFFGENLPSRYFHRVDVDFPKADLLLIMGTSLVVQPFCSL 214
L++P +V+FGE LP R + +AD++++ GTS VVQP SL
Sbjct: 151 LLRPGVVWFGEMLPPDVLDRAMREVERADVIIVAGTSAVVQPAASL 196
>pdb|1ICI|A Chain A, Crystal Structure Of A Sir2 Homolog-Nad Complex
pdb|1ICI|B Chain B, Crystal Structure Of A Sir2 Homolog-Nad Complex
Length = 256
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 56/106 (52%), Gaps = 5/106 (4%)
Query: 109 FTQNIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDYSVAWMKERIFAEVIPTCEKCNG 168
TQN+D+L AG ++ HGS C +C + V + +P C+KC
Sbjct: 107 ITQNVDDLHERAG--SRNVIHLHGSLRVVRCTSCNNSFEVESAPK---IPPLPKCDKCGS 161
Query: 169 LVKPDIVFFGENLPSRYFHRVDVDFPKADLLLIMGTSLVVQPFCSL 214
L++P +V+FGE LP R + +AD++++ GTS VVQP SL
Sbjct: 162 LLRPGVVWFGEMLPPDVLDRAMREVERADVIIVAGTSAVVQPAASL 207
>pdb|1M2K|A Chain A, Sir2 Homologue F159a Mutant-Adp Ribose Complex
Length = 249
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 55/106 (51%), Gaps = 5/106 (4%)
Query: 109 FTQNIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDYSVAWMKERIFAEVIPTCEKCNG 168
TQN+D+L AG ++ HGS C +C + V + +P C+KC
Sbjct: 96 ITQNVDDLHERAG--SRNVIHLHGSLRVVRCTSCNNSFEVESAPK---IPPLPKCDKCGS 150
Query: 169 LVKPDIVFFGENLPSRYFHRVDVDFPKADLLLIMGTSLVVQPFCSL 214
L++P +V+ GE LP R + +AD++++ GTS VVQP SL
Sbjct: 151 LLRPGVVWAGEMLPPDVLDRAMREVERADVIIVAGTSAVVQPAASL 196
>pdb|1M2N|A Chain A, Sir2 Homologues (D102gF159AR170A) MUTANT-2'-O-Acetyl Adp
Ribose Complex
pdb|1M2N|B Chain B, Sir2 Homologues (D102gF159AR170A) MUTANT-2'-O-Acetyl Adp
Ribose Complex
Length = 249
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 53/106 (50%), Gaps = 5/106 (4%)
Query: 109 FTQNIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDYSVAWMKERIFAEVIPTCEKCNG 168
TQN+D L AG ++ HGS C +C + V + +P C+KC
Sbjct: 96 ITQNVDGLHERAG--SRNVIHLHGSLRVVRCTSCNNSFEVESAPK---IPPLPKCDKCGS 150
Query: 169 LVKPDIVFFGENLPSRYFHRVDVDFPKADLLLIMGTSLVVQPFCSL 214
L++P +V+ GE LP + +AD++++ GTS VVQP SL
Sbjct: 151 LLRPGVVWAGEMLPPDVLDAAMREVERADVIIVAGTSAVVQPAASL 196
>pdb|2B4Y|A Chain A, Crystal Structure Of Human Sirtuin Homolog 5
pdb|2B4Y|B Chain B, Crystal Structure Of Human Sirtuin Homolog 5
pdb|2B4Y|C Chain C, Crystal Structure Of Human Sirtuin Homolog 5
pdb|2B4Y|D Chain D, Crystal Structure Of Human Sirtuin Homolog 5
Length = 271
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 60/129 (46%), Gaps = 21/129 (16%)
Query: 109 FTQNIDNLERIAGLPDDKLVEAHGSFHTSHCLTC---RKDYSV--------------AWM 151
TQNID L R AG + L+E HGS + C +C ++Y
Sbjct: 107 ITQNIDELHRKAGTKN--LLEIHGSLFKTRCTSCGVVAENYKSPICPALSGKGAPEPGTQ 164
Query: 152 KERIFAEVIPTCEK--CNGLVKPDIVFFGENLPSRYFHRVDVDFPKADLLLIMGTSLVVQ 209
I E +P CE+ C GL++P +V+FGENL VD + DL L++GTS VV
Sbjct: 165 DASIPVEKLPRCEEAGCGGLLRPHVVWFGENLDPAILEEVDRELAHCDLCLVVGTSSVVY 224
Query: 210 PFCSLVDKV 218
P +V
Sbjct: 225 PAAXFAPQV 233
>pdb|4G1C|A Chain A, Human Sirt5 Bound To Succ-Idh2 And Carba-Nad
pdb|4G1C|B Chain B, Human Sirt5 Bound To Succ-Idh2 And Carba-Nad
Length = 267
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 60/129 (46%), Gaps = 21/129 (16%)
Query: 109 FTQNIDNLERIAGLPDDKLVEAHGSFHTSHCLTC---RKDYSV--------------AWM 151
TQNID L R AG + L+E HGS + C +C ++Y
Sbjct: 103 ITQNIDELHRKAGTKN--LLEIHGSLFKTRCTSCGVVAENYKSPICPALSGKGAPEPGTQ 160
Query: 152 KERIFAEVIPTCEK--CNGLVKPDIVFFGENLPSRYFHRVDVDFPKADLLLIMGTSLVVQ 209
I E +P CE+ C GL++P +V+FGENL VD + DL L++GTS VV
Sbjct: 161 DASIPVEKLPRCEEAGCGGLLRPHVVWFGENLDPAILEEVDRELAHCDLCLVVGTSSVVY 220
Query: 210 PFCSLVDKV 218
P +V
Sbjct: 221 PAAMFAPQV 229
>pdb|2NYR|A Chain A, Crystal Structure Of Human Sirtuin Homolog 5 In Complex
With Suramin
pdb|2NYR|B Chain B, Crystal Structure Of Human Sirtuin Homolog 5 In Complex
With Suramin
Length = 271
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 60/129 (46%), Gaps = 21/129 (16%)
Query: 109 FTQNIDNLERIAGLPDDKLVEAHGSFHTSHCLTC---RKDYSV--------------AWM 151
TQNID L R AG + L+E HGS + C +C ++Y
Sbjct: 107 ITQNIDELHRKAGTKN--LLEIHGSLFKTRCTSCGVVAENYKSPICPALSGKGAPEPGTQ 164
Query: 152 KERIFAEVIPTCEK--CNGLVKPDIVFFGENLPSRYFHRVDVDFPKADLLLIMGTSLVVQ 209
I E +P CE+ C GL++P +V+FGENL VD + DL L++GTS VV
Sbjct: 165 DASIPVEKLPRCEEAGCGGLLRPHVVWFGENLDPAILEEVDRELAHCDLCLVVGTSSVVY 224
Query: 210 PFCSLVDKV 218
P +V
Sbjct: 225 PAAMFAPQV 233
>pdb|3RIG|A Chain A, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And
Desuccinylase
pdb|3RIG|B Chain B, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And
Desuccinylase
pdb|3RIY|A Chain A, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And
Desuccinylase
pdb|3RIY|B Chain B, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And
Desuccinylase
pdb|4F4U|A Chain A, The Bicyclic Intermediate Structure Provides Insights Into
The Desuccinylation Mechanism Of Sirt5
pdb|4F4U|B Chain B, The Bicyclic Intermediate Structure Provides Insights Into
The Desuccinylation Mechanism Of Sirt5
pdb|4F56|A Chain A, The Bicyclic Intermediate Structure Provides Insights Into
The Desuccinylation Mechanism Of Sirt5
pdb|4F56|B Chain B, The Bicyclic Intermediate Structure Provides Insights Into
The Desuccinylation Mechanism Of Sirt5
Length = 273
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 60/129 (46%), Gaps = 21/129 (16%)
Query: 109 FTQNIDNLERIAGLPDDKLVEAHGSFHTSHCLTC---RKDYSV--------------AWM 151
TQNID L R AG + L+E HGS + C +C ++Y
Sbjct: 109 ITQNIDELHRKAGTKN--LLEIHGSLFKTRCTSCGVVAENYKSPICPALSGKGAPEPGTQ 166
Query: 152 KERIFAEVIPTCEK--CNGLVKPDIVFFGENLPSRYFHRVDVDFPKADLLLIMGTSLVVQ 209
I E +P CE+ C GL++P +V+FGENL VD + DL L++GTS VV
Sbjct: 167 DASIPVEKLPRCEEAGCGGLLRPHVVWFGENLDPAILEEVDRELAHCDLCLVVGTSSVVY 226
Query: 210 PFCSLVDKV 218
P +V
Sbjct: 227 PAAMFAPQV 235
>pdb|4HDA|A Chain A, Crystal Structure Of Human Sirt5 In Complex With
Fluor-de-lys Peptide And Resveratrol
pdb|4HDA|B Chain B, Crystal Structure Of Human Sirt5 In Complex With
Fluor-de-lys Peptide And Resveratrol
Length = 275
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 60/129 (46%), Gaps = 21/129 (16%)
Query: 109 FTQNIDNLERIAGLPDDKLVEAHGSFHTSHCLTC---RKDYSV--------------AWM 151
TQNID L R AG + L+E HGS + C +C ++Y
Sbjct: 111 ITQNIDELHRKAGTKN--LLEIHGSLFKTRCTSCGVVAENYKSPICPALSGKGAPEPGTQ 168
Query: 152 KERIFAEVIPTCEK--CNGLVKPDIVFFGENLPSRYFHRVDVDFPKADLLLIMGTSLVVQ 209
I E +P CE+ C GL++P +V+FGENL VD + DL L++GTS VV
Sbjct: 169 DASIPVEKLPRCEEAGCGGLLRPHVVWFGENLDPAILEEVDRELAHCDLCLVVGTSSVVY 228
Query: 210 PFCSLVDKV 218
P +V
Sbjct: 229 PAAMFAPQV 237
>pdb|3U31|A Chain A, Plasmodium Falciparum Sir2a Preferentially Hydrolyzes
Medium And Long Chain Fatty Acyl Lysine
pdb|3U3D|A Chain A, Plasmodium Falciparum Sir2a Preferentially Hydrolyzes
Medium And Long Chain Fatty Acyl Lysine
Length = 290
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 69/159 (43%), Gaps = 14/159 (8%)
Query: 110 TQNIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDYS---VAWMKERIFAEVIPTCEKC 166
TQN+D L +G + K++ HG+ + C TC K + K F +P C
Sbjct: 130 TQNVDGLHEASG--NTKVISLHGNVFEAVCCTCNKIVKLNKIMLQKTSHFMHQLPPECPC 187
Query: 167 NGLVKPDIVFFGENLPSRYFHRVDVDFPKADLLLIMGTSLVVQPFCSLV--------DKV 218
G+ KP+I+ FGE + S + + K DLLL++GTS V +L V
Sbjct: 188 GGIFKPNIILFGEVVSSDLLKEAEEEIAKCDLLLVIGTSSTVSTATNLCHFACKKKKKIV 247
Query: 219 DVDFPKADLLLIMGTSLVVQPFCSLVDKTNI-RGSDSDN 256
+++ K + M V F L NI +GS N
Sbjct: 248 EINISKTYITNKMSDYHVCAKFSELTKVANILKGSSEKN 286
>pdb|3JWP|A Chain A, Crystal Structure Of Plasmodium Falciparum Sir2a
(Pf13_0152) In Complex With Amp
Length = 265
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 68/160 (42%), Gaps = 14/160 (8%)
Query: 109 FTQNIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDYS---VAWMKERIFAEVIPTCEK 165
TQN+D L +G + K++ HG+ + C TC K + K F +P
Sbjct: 104 VTQNVDGLHEASG--NTKVISLHGNVFEAVCCTCNKIVKLNKIXLQKTSHFXHQLPPECP 161
Query: 166 CNGLVKPDIVFFGENLPSRYFHRVDVDFPKADLLLIMGTSLVVQPFCSLV--------DK 217
C G+ KP+I+ FGE + S + + K DLLL++GTS V +L
Sbjct: 162 CGGIFKPNIILFGEVVSSDLLKEAEEEIAKCDLLLVIGTSSTVSTATNLCHFACKKKKKI 221
Query: 218 VDVDFPKADLLLIMGTSLVVQPFCSLVDKTNI-RGSDSDN 256
V+++ K + V F L NI +GS N
Sbjct: 222 VEINISKTYITNKXSDYHVCAKFSELTKVANILKGSSEKN 261
>pdb|3K35|A Chain A, Crystal Structure Of Human Sirt6
pdb|3K35|B Chain B, Crystal Structure Of Human Sirt6
pdb|3K35|C Chain C, Crystal Structure Of Human Sirt6
pdb|3K35|D Chain D, Crystal Structure Of Human Sirt6
pdb|3K35|E Chain E, Crystal Structure Of Human Sirt6
pdb|3K35|F Chain F, Crystal Structure Of Human Sirt6
Length = 318
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 58/138 (42%), Gaps = 9/138 (6%)
Query: 86 SFKPTPCHYFXXXXXXXXXXXRHFTQNIDNLERIAGLPDDKLVEAHGSFHTSHCLTCR-- 143
S +PT H +QN+D L +G P DKL E HG+ C C+
Sbjct: 88 SARPTQTHMALVQLERVGLLRFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECAKCKTQ 147
Query: 144 --KDYSVAWMKERIFAEVIPTCE-----KCNGLVKPDIVFFGENLPSRYFHRVDVDFPKA 196
+D V M + + + C G ++ I+ + ++LP R D A
Sbjct: 148 YVRDTVVGTMGLKATGRLCTVAKARGLRACRGELRDTILDWEDSLPDRDLALADEASRNA 207
Query: 197 DLLLIMGTSLVVQPFCSL 214
DL + +GTSL ++P +L
Sbjct: 208 DLSITLGTSLQIRPSGNL 225
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Query: 254 SDNIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDYSVAWMKEGNLLGRMGI 306
S N+D L +G P DKL E HG+ C C+ Y ++G MG+
Sbjct: 112 SQNVDGLHVRSGFPRDKLAELHGNMFVEECAKCKTQYV-----RDTVVGTMGL 159
>pdb|3PKI|A Chain A, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|B Chain B, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|C Chain C, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|D Chain D, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|E Chain E, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|F Chain F, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKJ|A Chain A, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|B Chain B, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|C Chain C, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|D Chain D, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|E Chain E, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|F Chain F, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
Length = 355
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 58/138 (42%), Gaps = 9/138 (6%)
Query: 86 SFKPTPCHYFXXXXXXXXXXXRHFTQNIDNLERIAGLPDDKLVEAHGSFHTSHCLTCR-- 143
S +PT H +QN+D L +G P DKL E HG+ C C+
Sbjct: 88 SARPTQTHMALVQLERVGLLRFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECAKCKTQ 147
Query: 144 --KDYSVAWMKERIFAEVIPTCE-----KCNGLVKPDIVFFGENLPSRYFHRVDVDFPKA 196
+D V M + + + C G ++ I+ + ++LP R D A
Sbjct: 148 YVRDTVVGTMGLKATGRLCTVAKARGLRACRGELRDTILDWEDSLPDRDLALADEASRNA 207
Query: 197 DLLLIMGTSLVVQPFCSL 214
DL + +GTSL ++P +L
Sbjct: 208 DLSITLGTSLQIRPSGNL 225
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Query: 254 SDNIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDYSVAWMKEGNLLGRMGI 306
S N+D L +G P DKL E HG+ C C+ Y ++G MG+
Sbjct: 112 SQNVDGLHVRSGFPRDKLAELHGNMFVEECAKCKTQYV-----RDTVVGTMGL 159
>pdb|3AY3|A Chain A, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|B Chain B, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|C Chain C, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|D Chain D, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
Length = 267
Score = 35.4 bits (80), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 60/139 (43%), Gaps = 22/139 (15%)
Query: 154 RIFAEVIPTCEKCNGLVKPDIVFFGENLPSRYFHRVDVD---------FPKADLLLIMGT 204
RI EV + GL K FGE+L S Y+H+ D++ FPK +M T
Sbjct: 122 RIDTEVPRRPDSLYGLSK----CFGEDLASLYYHKFDIETLNIRIGSCFPKPKDARMMAT 177
Query: 205 SLVVQPFCSLVDKVDVDFPKADLLLIMGTSLVVQPFCSLVDKTNIRG---SDSDNI--DN 259
L V F L+ + V PK ++ G S + + DK+ G DS I +
Sbjct: 178 WLSVDDFMRLMKRAFV-APKLGCTVVYGASANTESWWD-NDKSAFLGWVPQDSSEIWREE 235
Query: 260 LERIAGL--PDDKLVEAHG 276
+E+ AG PDD V G
Sbjct: 236 IEQQAGEIDPDDPAVIYQG 254
>pdb|1S5P|A Chain A, Structure And Substrate Binding Properties Of Cobb, A Sir2
Homolog Protein Deacetylase From Eschericia Coli
Length = 235
Score = 31.6 bits (70), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 15/115 (13%)
Query: 110 TQNIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDYSVAWMKERIFAEVIP--TCEKCN 167
TQNIDNL AG + ++ HG C + + W +V P C C
Sbjct: 89 TQNIDNLHERAG--NTNVIHMHGELLKVRC--SQSGQVLDWT-----GDVTPEDKCHCCQ 139
Query: 168 --GLVKPDIVFFGENLPSRYFHRVDVDFPKADLLLIMGTSLVVQPFCSLVDKVDV 220
++P +V+FGE +P + + AD+ + +GTS V P V + +
Sbjct: 140 FPAPLRPHVVWFGE-MPLG-MDEIYMALSMADIFIAIGTSGHVYPAAGFVHEAKL 192
>pdb|2R3V|A Chain A, The Biochemical And Structural Basis For Feedback
Inhibition Of Mevalonate Kinase And Isoprenoid
Metabolism
pdb|2R3V|B Chain B, The Biochemical And Structural Basis For Feedback
Inhibition Of Mevalonate Kinase And Isoprenoid
Metabolism
pdb|2R3V|C Chain C, The Biochemical And Structural Basis For Feedback
Inhibition Of Mevalonate Kinase And Isoprenoid
Metabolism
pdb|2R3V|D Chain D, The Biochemical And Structural Basis For Feedback
Inhibition Of Mevalonate Kinase And Isoprenoid
Metabolism
Length = 396
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 5/96 (5%)
Query: 200 LIMGTSLVVQPFCSLVDKVDVDFPKADLLLIMGTSLVVQPFCSLVDKTNIRGSDSDNIDN 259
L + T L +QP + KVD+ P + + + S +++ ++ S+ ++
Sbjct: 33 LNLRTFLRLQPHSN--GKVDLSLPNIGIKRAWDVARLQSLDTSFLEQGDVTTPTSEQVEK 90
Query: 260 LERIAGLPDDKLVE---AHGSFHTSHCLTCRKDYSV 292
L+ +AGLPDD V A +F + CRK ++
Sbjct: 91 LKEVAGLPDDCAVTERLAVLAFLYLYLSICRKQRAL 126
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.142 0.463
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,650,699
Number of Sequences: 62578
Number of extensions: 572793
Number of successful extensions: 939
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 770
Number of HSP's gapped (non-prelim): 130
length of query: 494
length of database: 14,973,337
effective HSP length: 103
effective length of query: 391
effective length of database: 8,527,803
effective search space: 3334370973
effective search space used: 3334370973
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)