Query psy11832
Match_columns 494
No_of_seqs 360 out of 2440
Neff 6.7
Searched_HMMs 46136
Date Fri Aug 16 20:06:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11832.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11832hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2682|consensus 100.0 2.9E-66 6.3E-71 488.0 10.1 246 2-461 48-296 (314)
2 PTZ00410 NAD-dependent SIR2; P 100.0 2.1E-60 4.6E-65 484.0 22.1 204 1-236 40-243 (349)
3 cd01408 SIRT1 SIRT1: Eukaryoti 100.0 1.1E-53 2.3E-58 419.0 18.4 204 1-238 11-215 (235)
4 cd01413 SIR2_Af2 SIR2_Af2: Arc 100.0 8.3E-51 1.8E-55 395.5 18.5 203 1-243 15-217 (222)
5 COG0846 SIR2 NAD-dependent pro 100.0 4.9E-51 1.1E-55 400.0 16.1 208 1-247 23-232 (250)
6 PTZ00409 Sir2 (Silent Informat 100.0 1.4E-50 3.1E-55 403.3 18.3 204 1-244 39-247 (271)
7 PRK14138 NAD-dependent deacety 100.0 2.1E-50 4.6E-55 397.6 17.4 208 1-248 22-229 (244)
8 cd01409 SIRT4 SIRT4: Eukaryoti 100.0 1.6E-49 3.5E-54 394.6 18.8 208 1-246 19-253 (260)
9 cd01410 SIRT7 SIRT7: Eukaryoti 100.0 2.6E-49 5.7E-54 380.5 17.3 190 1-243 11-201 (206)
10 cd01407 SIR2-fam SIR2 family o 100.0 5.3E-49 1.1E-53 382.0 19.0 201 1-242 11-212 (218)
11 cd01411 SIR2H SIR2H: Uncharact 100.0 1.8E-48 3.9E-53 379.8 18.5 199 1-244 19-217 (225)
12 cd01412 SIRT5_Af1_CobB SIRT5_A 100.0 6.3E-48 1.4E-52 375.9 15.9 198 1-241 11-208 (224)
13 PTZ00408 NAD-dependent deacety 100.0 1.3E-47 2.8E-52 376.7 16.7 198 1-242 15-217 (242)
14 PRK00481 NAD-dependent deacety 100.0 4.1E-47 8.8E-52 374.3 17.7 199 1-242 24-222 (242)
15 PF02146 SIR2: Sir2 family; I 100.0 4.9E-47 1.1E-51 357.1 11.3 173 1-210 4-178 (178)
16 PRK05333 NAD-dependent deacety 100.0 1.3E-45 2.9E-50 371.5 17.8 204 1-243 30-260 (285)
17 cd00296 SIR2 SIR2 superfamily 100.0 3.2E-43 6.8E-48 341.6 18.6 200 1-238 11-210 (222)
18 KOG2684|consensus 100.0 1.2E-43 2.7E-48 359.5 16.0 202 2-237 100-319 (412)
19 PTZ00410 NAD-dependent SIR2; P 100.0 2.5E-40 5.3E-45 337.1 8.5 218 231-493 97-328 (349)
20 KOG2683|consensus 100.0 8.2E-38 1.8E-42 295.2 15.1 206 2-245 57-294 (305)
21 KOG2684|consensus 100.0 9.9E-35 2.2E-39 294.8 8.4 196 209-455 140-353 (412)
22 KOG1905|consensus 100.0 5.7E-35 1.2E-39 284.2 2.9 199 2-255 67-274 (353)
23 KOG2682|consensus 100.0 1E-31 2.2E-36 254.2 6.2 111 108-218 124-235 (314)
24 PRK14138 NAD-dependent deacety 100.0 1.7E-30 3.7E-35 256.2 10.0 161 231-401 71-243 (244)
25 cd01408 SIRT1 SIRT1: Eukaryoti 100.0 2.1E-30 4.5E-35 254.3 9.0 157 231-395 66-235 (235)
26 cd01409 SIRT4 SIRT4: Eukaryoti 100.0 1.8E-30 4E-35 258.1 8.3 153 231-391 70-259 (260)
27 cd01410 SIRT7 SIRT7: Eukaryoti 100.0 4.1E-30 8.9E-35 247.4 8.1 149 232-387 46-206 (206)
28 COG0846 SIR2 NAD-dependent pro 100.0 3E-30 6.4E-35 253.4 7.0 160 232-400 75-246 (250)
29 PRK05333 NAD-dependent deacety 99.9 4.1E-28 8.8E-33 244.6 11.0 163 231-401 80-279 (285)
30 PTZ00409 Sir2 (Silent Informat 99.9 4.6E-28 1E-32 241.8 9.5 159 231-399 89-262 (271)
31 PTZ00408 NAD-dependent deacety 99.9 4.6E-28 1E-32 238.3 8.8 154 231-399 67-235 (242)
32 cd01413 SIR2_Af2 SIR2_Af2: Arc 99.9 8E-28 1.7E-32 234.2 8.2 146 231-387 65-222 (222)
33 PRK00481 NAD-dependent deacety 99.9 4E-27 8.6E-32 232.2 9.5 155 231-399 74-240 (242)
34 PF02146 SIR2: Sir2 family; I 99.9 5.7E-28 1.2E-32 227.5 1.5 117 231-355 57-176 (178)
35 cd01412 SIRT5_Af1_CobB SIRT5_A 99.9 7.3E-27 1.6E-31 227.8 8.0 151 231-395 61-223 (224)
36 cd01411 SIR2H SIR2H: Uncharact 99.9 3.5E-27 7.6E-32 230.1 5.5 142 231-390 71-223 (225)
37 cd01407 SIR2-fam SIR2 family o 99.9 1.1E-26 2.4E-31 225.7 8.3 146 231-387 61-218 (218)
38 cd00296 SIR2 SIR2 superfamily 99.9 2.4E-23 5.2E-28 202.2 8.6 127 231-368 63-192 (222)
39 KOG2683|consensus 99.8 7.9E-22 1.7E-26 187.1 5.2 155 232-394 110-304 (305)
40 KOG1905|consensus 99.8 3.5E-21 7.6E-26 188.1 3.0 169 231-402 98-282 (353)
41 cd01406 SIR2-like Sir2-like: P 97.8 0.00015 3.2E-09 71.6 11.7 118 85-231 76-217 (242)
42 PF13289 SIR2_2: SIR2-like dom 93.1 0.3 6.6E-06 43.2 6.9 50 186-235 76-127 (143)
43 PF00205 TPP_enzyme_M: Thiamin 85.6 1.1 2.4E-05 39.8 4.3 49 187-238 69-117 (137)
44 smart00834 CxxC_CXXC_SSSS Puta 84.3 0.31 6.8E-06 34.1 0.0 34 135-171 4-37 (41)
45 PF09723 Zn-ribbon_8: Zinc rib 81.3 0.41 9E-06 34.3 -0.3 35 134-171 3-38 (42)
46 PF07295 DUF1451: Protein of u 81.0 0.82 1.8E-05 41.9 1.4 30 134-169 110-139 (146)
47 PRK11032 hypothetical protein; 79.9 0.94 2E-05 42.1 1.5 30 134-169 122-151 (160)
48 smart00834 CxxC_CXXC_SSSS Puta 79.1 1.3 2.8E-05 30.9 1.7 33 278-315 3-35 (41)
49 PF09723 Zn-ribbon_8: Zinc rib 76.2 1.7 3.8E-05 31.0 1.6 32 278-314 3-34 (42)
50 PF02591 DUF164: Putative zinc 75.3 3.3 7.1E-05 31.4 3.1 41 126-170 16-56 (56)
51 TIGR02605 CxxC_CxxC_SSSS putat 72.8 1.2 2.6E-05 33.1 0.1 31 135-168 4-34 (52)
52 smart00531 TFIIE Transcription 72.7 2.6 5.6E-05 38.5 2.3 37 136-172 99-135 (147)
53 COG3091 SprT Zn-dependent meta 72.5 1.7 3.6E-05 39.9 1.0 67 103-171 85-151 (156)
54 TIGR02605 CxxC_CxxC_SSSS putat 72.1 1.9 4.2E-05 31.9 1.1 32 278-314 3-34 (52)
55 PF09845 DUF2072: Zn-ribbon co 72.0 2 4.3E-05 38.5 1.3 26 282-315 3-28 (131)
56 TIGR00373 conserved hypothetic 71.1 3.7 8E-05 38.1 2.9 32 135-171 108-139 (158)
57 PF14353 CpXC: CpXC protein 69.1 3.6 7.7E-05 36.5 2.3 35 281-315 2-47 (128)
58 PF07295 DUF1451: Protein of u 68.0 3.2 7E-05 38.1 1.8 30 278-315 110-139 (146)
59 COG1379 PHP family phosphoeste 67.3 1.7 3.6E-05 44.6 -0.2 40 130-174 240-279 (403)
60 PRK06266 transcription initiat 67.0 4.3 9.3E-05 38.4 2.5 33 135-172 116-148 (178)
61 TIGR00595 priA primosomal prot 66.6 12 0.00027 41.1 6.3 42 185-235 300-342 (505)
62 COG3364 Zn-ribbon containing p 66.6 2.8 6E-05 35.9 1.0 27 281-315 3-29 (112)
63 cd00350 rubredoxin_like Rubred 65.6 3.5 7.7E-05 27.8 1.2 24 137-168 2-25 (33)
64 PRK00398 rpoP DNA-directed RNA 64.9 3.5 7.7E-05 29.9 1.2 29 135-169 2-30 (46)
65 PRK06260 threonine synthase; V 64.6 4.7 0.0001 42.9 2.5 31 135-173 2-32 (397)
66 TIGR02098 MJ0042_CXXC MJ0042 f 64.4 2.8 6.1E-05 28.9 0.6 34 136-171 2-36 (38)
67 COG1579 Zn-ribbon protein, pos 63.9 7.4 0.00016 38.6 3.6 41 126-170 191-231 (239)
68 PRK12496 hypothetical protein; 63.7 2 4.3E-05 40.2 -0.4 54 107-171 93-154 (164)
69 TIGR00373 conserved hypothetic 63.2 5.2 0.00011 37.1 2.3 30 279-315 108-137 (158)
70 PRK06266 transcription initiat 63.2 5 0.00011 38.0 2.2 29 280-315 117-145 (178)
71 PF01155 HypA: Hydrogenase exp 60.6 3.9 8.5E-05 35.7 0.9 34 272-315 62-95 (113)
72 COG1198 PriA Primosomal protei 60.6 16 0.00035 42.0 6.0 16 221-236 503-518 (730)
73 PRK14873 primosome assembly pr 60.5 14 0.00031 42.0 5.6 14 160-173 422-436 (665)
74 PRK05580 primosome assembly pr 60.1 19 0.00041 41.2 6.5 40 185-233 468-508 (679)
75 COG2331 Uncharacterized protei 59.8 2.9 6.2E-05 33.9 -0.1 41 135-178 11-56 (82)
76 cd00729 rubredoxin_SM Rubredox 59.2 6.4 0.00014 26.9 1.6 26 136-169 2-27 (34)
77 PF10571 UPF0547: Uncharacteri 58.7 6.2 0.00014 25.4 1.3 21 282-314 2-22 (26)
78 TIGR03254 oxalate_oxc oxalyl-C 57.9 12 0.00027 41.3 4.5 60 176-238 246-305 (554)
79 COG1198 PriA Primosomal protei 57.9 24 0.00052 40.6 6.7 24 279-315 461-484 (730)
80 COG1996 RPC10 DNA-directed RNA 57.2 4.6 9.9E-05 30.1 0.6 27 281-315 7-33 (49)
81 PRK11032 hypothetical protein; 57.1 7.1 0.00015 36.4 2.0 30 278-315 122-151 (160)
82 PF13717 zinc_ribbon_4: zinc-r 56.6 8.5 0.00018 26.6 1.8 32 280-314 2-33 (36)
83 PRK06882 acetolactate synthase 55.0 11 0.00024 41.9 3.5 47 188-238 265-311 (574)
84 PRK08979 acetolactate synthase 54.6 11 0.00024 41.9 3.5 48 187-238 264-311 (572)
85 PRK07591 threonine synthase; V 54.4 8.3 0.00018 41.4 2.3 31 134-173 16-46 (421)
86 TIGR00354 polC DNA polymerase, 53.9 8.5 0.00018 44.9 2.3 38 129-174 1000-1042(1095)
87 PRK07979 acetolactate synthase 53.1 12 0.00027 41.5 3.5 47 188-238 265-311 (574)
88 PRK06260 threonine synthase; V 52.4 8.3 0.00018 40.9 1.9 28 278-315 1-28 (397)
89 PF13719 zinc_ribbon_5: zinc-r 52.4 9.3 0.0002 26.5 1.5 32 280-314 2-33 (37)
90 PRK00564 hypA hydrogenase nick 52.4 8.3 0.00018 33.9 1.6 33 274-315 65-97 (117)
91 PRK07418 acetolactate synthase 52.1 13 0.00028 41.8 3.5 47 188-238 283-329 (616)
92 smart00659 RPOLCX RNA polymera 51.4 8.6 0.00019 27.9 1.2 26 137-169 3-28 (44)
93 PRK09259 putative oxalyl-CoA d 51.0 19 0.00042 40.0 4.6 59 177-238 254-312 (569)
94 PF13248 zf-ribbon_3: zinc-rib 50.7 8.1 0.00018 24.6 0.9 25 136-170 2-26 (26)
95 PRK04023 DNA polymerase II lar 50.3 11 0.00023 44.4 2.3 38 129-174 1025-1067(1121)
96 PRK08527 acetolactate synthase 50.1 15 0.00033 40.8 3.6 47 188-238 262-308 (563)
97 PRK00564 hypA hydrogenase nick 50.1 6.4 0.00014 34.7 0.5 37 126-169 61-97 (117)
98 PRK03824 hypA hydrogenase nick 50.0 6.7 0.00014 35.4 0.6 15 135-149 69-83 (135)
99 PF09538 FYDLN_acid: Protein o 49.8 10 0.00022 33.0 1.7 30 136-173 9-39 (108)
100 PLN02470 acetolactate synthase 49.6 16 0.00034 40.9 3.6 46 188-237 272-317 (585)
101 PRK09107 acetolactate synthase 48.5 16 0.00035 40.9 3.5 48 188-239 273-320 (595)
102 TIGR00100 hypA hydrogenase nic 48.0 8 0.00017 33.9 0.8 27 279-315 69-95 (115)
103 PRK14714 DNA polymerase II lar 47.7 12 0.00026 45.1 2.3 38 129-174 1241-1283(1337)
104 CHL00099 ilvB acetohydroxyacid 47.4 18 0.00039 40.4 3.6 45 189-237 277-321 (585)
105 smart00531 TFIIE Transcription 47.4 14 0.0003 33.7 2.3 34 280-315 99-132 (147)
106 PRK06466 acetolactate synthase 47.1 18 0.00038 40.3 3.5 48 188-239 265-312 (574)
107 PRK12380 hydrogenase nickel in 46.9 8.3 0.00018 33.7 0.7 29 277-315 67-95 (113)
108 PRK07789 acetolactate synthase 46.8 18 0.00039 40.7 3.5 46 188-237 290-335 (612)
109 COG1379 PHP family phosphoeste 46.7 5.8 0.00012 40.9 -0.4 101 199-315 165-274 (403)
110 PRK06725 acetolactate synthase 46.7 17 0.00037 40.5 3.3 47 188-238 273-319 (570)
111 PF09845 DUF2072: Zn-ribbon co 46.6 9.1 0.0002 34.4 0.9 26 138-169 3-28 (131)
112 TIGR00315 cdhB CO dehydrogenas 46.5 32 0.00069 32.1 4.5 40 189-231 91-133 (162)
113 PRK03681 hypA hydrogenase nick 46.3 12 0.00025 32.9 1.5 29 278-315 68-96 (114)
114 TIGR01504 glyox_carbo_lig glyo 46.1 17 0.00036 40.8 3.1 47 188-238 262-308 (588)
115 TIGR03844 cysteate_syn cysteat 46.1 14 0.0003 39.4 2.4 30 135-173 1-30 (398)
116 PRK06048 acetolactate synthase 45.9 19 0.00041 40.0 3.5 48 188-239 266-313 (561)
117 PF05191 ADK_lid: Adenylate ki 45.5 7.9 0.00017 26.9 0.3 30 137-170 2-31 (36)
118 COG1439 Predicted nucleic acid 45.0 11 0.00024 35.6 1.2 29 135-173 138-166 (177)
119 PRK03824 hypA hydrogenase nick 44.3 13 0.00028 33.5 1.6 16 279-294 69-84 (135)
120 PF12172 DUF35_N: Rubredoxin-l 44.0 14 0.0003 25.4 1.3 28 275-314 6-33 (37)
121 PRK07591 threonine synthase; V 43.7 13 0.00028 39.9 1.8 29 276-315 14-42 (421)
122 PRK06450 threonine synthase; V 43.6 16 0.00034 38.1 2.3 29 136-173 3-31 (338)
123 PLN02573 pyruvate decarboxylas 43.5 21 0.00045 39.9 3.4 48 188-239 284-331 (578)
124 PRK05858 hypothetical protein; 43.4 27 0.00058 38.6 4.2 57 177-239 244-300 (542)
125 PF01155 HypA: Hydrogenase exp 43.2 8.4 0.00018 33.6 0.2 35 127-169 61-95 (113)
126 PRK07282 acetolactate synthase 43.2 22 0.00048 39.5 3.5 47 188-238 269-315 (566)
127 PF14169 YdjO: Cold-inducible 41.9 13 0.00029 28.7 1.1 37 135-176 17-55 (59)
128 PRK06112 acetolactate synthase 41.7 23 0.0005 39.4 3.4 46 188-237 277-322 (578)
129 PRK08322 acetolactate synthase 41.6 23 0.0005 39.1 3.3 47 188-239 255-301 (547)
130 PRK08978 acetolactate synthase 41.4 24 0.00052 39.0 3.4 46 188-237 255-300 (548)
131 PRK08273 thiamine pyrophosphat 41.2 24 0.00053 39.5 3.5 44 188-238 265-308 (597)
132 TIGR00118 acolac_lg acetolacta 41.1 24 0.00051 39.1 3.3 46 188-237 260-305 (558)
133 PRK00762 hypA hydrogenase nick 41.1 17 0.00036 32.3 1.7 33 279-315 69-101 (124)
134 PF04016 DUF364: Domain of unk 40.6 33 0.00072 31.3 3.7 73 186-263 53-127 (147)
135 TIGR03844 cysteate_syn cysteat 40.3 18 0.00038 38.7 2.1 26 279-315 1-26 (398)
136 PRK06456 acetolactate synthase 40.2 26 0.00057 38.9 3.5 47 189-238 267-313 (572)
137 PRK06276 acetolactate synthase 39.2 28 0.0006 38.9 3.5 46 188-237 262-307 (586)
138 COG2260 Predicted Zn-ribbon RN 39.0 20 0.00043 27.7 1.6 21 282-316 7-27 (59)
139 PRK08155 acetolactate synthase 38.8 30 0.00066 38.4 3.7 47 189-239 271-317 (564)
140 PRK06546 pyruvate dehydrogenas 38.4 26 0.00056 39.2 3.1 63 337-400 260-323 (578)
141 cd00730 rubredoxin Rubredoxin; 38.3 8.1 0.00017 28.9 -0.6 32 137-168 2-42 (50)
142 PF00301 Rubredoxin: Rubredoxi 37.1 9.6 0.00021 28.1 -0.4 34 136-169 1-43 (47)
143 COG3357 Predicted transcriptio 37.0 12 0.00025 31.5 0.1 35 279-322 57-91 (97)
144 COG3962 Acetolactate synthase 36.6 40 0.00088 36.7 4.0 52 187-241 287-338 (617)
145 TIGR02300 FYDLN_acid conserved 36.5 22 0.00048 31.8 1.7 30 136-173 9-39 (129)
146 PRK11269 glyoxylate carboligas 36.5 32 0.00068 38.5 3.4 46 188-237 263-308 (591)
147 PRK14715 DNA polymerase II lar 36.5 23 0.0005 43.0 2.3 37 129-174 1530-1571(1627)
148 PF13240 zinc_ribbon_2: zinc-r 35.8 15 0.00033 22.8 0.5 22 138-169 1-22 (23)
149 PF14353 CpXC: CpXC protein 35.8 19 0.00042 31.8 1.3 19 275-293 33-51 (128)
150 COG1029 FwdB Formylmethanofura 35.7 46 0.00099 35.1 4.1 87 171-281 306-396 (429)
151 TIGR00375 conserved hypothetic 35.5 25 0.00053 37.3 2.2 38 131-174 235-272 (374)
152 PRK06965 acetolactate synthase 35.4 36 0.00077 38.1 3.6 48 188-238 280-327 (587)
153 PRK12496 hypothetical protein; 35.2 22 0.00049 33.1 1.7 27 279-315 126-152 (164)
154 PF10083 DUF2321: Uncharacteri 35.0 8.7 0.00019 35.4 -1.0 37 107-171 14-50 (158)
155 PRK07524 hypothetical protein; 34.8 34 0.00073 37.7 3.3 48 187-237 255-303 (535)
156 PRK07710 acetolactate synthase 34.4 36 0.00078 37.9 3.4 46 188-237 274-319 (571)
157 PF00205 TPP_enzyme_M: Thiamin 33.9 37 0.00081 29.9 2.9 59 336-395 71-137 (137)
158 PRK14873 primosome assembly pr 33.4 64 0.0014 36.9 5.2 10 306-315 422-431 (665)
159 COG1675 TFA1 Transcription ini 33.4 28 0.0006 33.0 2.0 31 136-171 113-143 (176)
160 PF13453 zf-TFIIB: Transcripti 32.8 11 0.00023 26.7 -0.7 28 282-315 1-28 (41)
161 TIGR03393 indolpyr_decarb indo 32.7 36 0.00079 37.5 3.1 46 188-237 265-310 (539)
162 COG0178 UvrA Excinuclease ATPa 32.0 2E+02 0.0044 33.7 8.7 37 278-316 242-279 (935)
163 COG0028 IlvB Thiamine pyrophos 31.8 54 0.0012 36.6 4.2 66 334-400 258-329 (550)
164 PRK00945 acetyl-CoA decarbonyl 31.8 79 0.0017 29.8 4.7 35 194-231 107-141 (171)
165 PRK06154 hypothetical protein; 31.5 46 0.001 37.0 3.7 45 188-238 273-317 (565)
166 COG1439 Predicted nucleic acid 30.6 32 0.0007 32.5 1.9 25 279-315 138-162 (177)
167 PRK08197 threonine synthase; V 30.5 27 0.00058 37.0 1.6 29 135-172 6-34 (394)
168 TIGR03394 indol_phenyl_DC indo 30.2 47 0.001 36.7 3.4 45 188-236 261-305 (535)
169 KOG1185|consensus 30.2 42 0.0009 36.7 2.8 61 176-239 257-317 (571)
170 PRK08266 hypothetical protein; 30.0 40 0.00087 37.1 2.9 46 188-238 256-301 (542)
171 PRK07525 sulfoacetaldehyde ace 30.0 48 0.001 37.0 3.5 47 188-237 259-307 (588)
172 TIGR00173 menD 2-succinyl-5-en 29.9 67 0.0014 34.4 4.5 43 191-239 271-313 (432)
173 PRK06450 threonine synthase; V 29.9 29 0.00064 36.1 1.7 24 281-315 4-27 (338)
174 PRK08197 threonine synthase; V 29.8 29 0.00063 36.8 1.6 27 278-315 5-31 (394)
175 PF08790 zf-LYAR: LYAR-type C2 29.7 20 0.00044 23.5 0.3 17 282-298 2-18 (28)
176 PRK07449 2-succinyl-5-enolpyru 29.6 67 0.0015 35.6 4.6 46 189-239 280-325 (568)
177 PRK07758 hypothetical protein; 29.4 25 0.00054 29.9 0.8 23 255-277 53-75 (95)
178 PF03604 DNA_RNApol_7kD: DNA d 29.3 33 0.00071 23.2 1.2 24 282-314 2-25 (32)
179 PRK09444 pntB pyridine nucleot 28.1 1.2E+02 0.0026 33.0 5.9 38 323-363 357-399 (462)
180 PRK08327 acetolactate synthase 28.1 41 0.0009 37.4 2.6 43 189-237 273-315 (569)
181 PRK11788 tetratricopeptide rep 26.0 34 0.00073 35.2 1.3 29 137-175 355-385 (389)
182 PLN02569 threonine synthase 25.3 47 0.001 36.5 2.3 30 135-173 48-77 (484)
183 TIGR02418 acolac_catab acetola 25.3 66 0.0014 35.4 3.5 46 188-238 255-300 (539)
184 PF07191 zinc-ribbons_6: zinc- 24.8 21 0.00045 28.7 -0.4 26 135-171 16-41 (70)
185 PRK06457 pyruvate dehydrogenas 24.7 75 0.0016 35.2 3.8 42 188-238 252-293 (549)
186 PRK07092 benzoylformate decarb 24.7 72 0.0016 35.1 3.7 48 187-237 264-311 (530)
187 PRK07789 acetolactate synthase 24.3 65 0.0014 36.2 3.3 64 337-400 292-361 (612)
188 PRK05638 threonine synthase; V 24.2 46 0.00099 35.9 1.9 28 136-173 1-28 (442)
189 PRK08327 acetolactate synthase 23.9 98 0.0021 34.5 4.6 65 336-400 273-344 (569)
190 PF09151 DUF1936: Domain of un 23.8 46 0.00099 22.4 1.1 12 162-173 3-15 (36)
191 cd07153 Fur_like Ferric uptake 23.7 2.2E+02 0.0048 24.1 5.8 52 86-148 32-85 (116)
192 COG1579 Zn-ribbon protein, pos 23.5 50 0.0011 32.8 1.9 39 271-315 192-230 (239)
193 KOG1465|consensus 23.1 90 0.002 32.2 3.6 101 182-288 149-253 (353)
194 PF07282 OrfB_Zn_ribbon: Putat 22.9 62 0.0014 25.1 2.0 47 260-314 8-54 (69)
195 PRK07418 acetolactate synthase 22.5 69 0.0015 36.1 3.0 64 337-400 285-354 (616)
196 COG1867 TRM1 N2,N2-dimethylgua 22.2 81 0.0017 33.4 3.2 69 136-215 240-309 (380)
197 TIGR03457 sulphoacet_xsc sulfo 22.2 74 0.0016 35.4 3.2 47 188-237 255-303 (579)
198 PRK06546 pyruvate dehydrogenas 22.2 89 0.0019 34.9 3.8 41 188-238 258-298 (578)
199 KOG2462|consensus 22.1 59 0.0013 32.9 2.1 34 281-314 188-223 (279)
200 COG1110 Reverse gyrase [DNA re 22.1 69 0.0015 38.2 2.8 44 138-201 696-741 (1187)
201 PF05265 DUF723: Protein of un 22.0 1.3E+02 0.0028 23.4 3.5 43 122-167 16-60 (60)
202 PF02233 PNTB: NAD(P) transhyd 22.0 1.1E+02 0.0024 33.4 4.3 29 333-364 373-401 (463)
203 PRK08979 acetolactate synthase 21.9 93 0.002 34.6 3.9 65 336-400 266-336 (572)
204 PRK08617 acetolactate synthase 21.6 78 0.0017 35.0 3.2 46 189-239 262-307 (552)
205 PRK08199 thiamine pyrophosphat 21.6 85 0.0018 34.8 3.5 49 188-237 263-311 (557)
206 PRK07064 hypothetical protein; 21.6 75 0.0016 35.0 3.1 45 188-237 257-301 (544)
207 PRK09462 fur ferric uptake reg 21.4 2.2E+02 0.0049 25.6 5.7 52 86-148 49-102 (148)
208 COG1545 Predicted nucleic-acid 20.9 68 0.0015 29.1 2.1 28 276-315 25-52 (140)
209 COG0028 IlvB Thiamine pyrophos 20.9 94 0.002 34.7 3.6 48 187-239 258-305 (550)
210 PF05605 zf-Di19: Drought indu 20.9 87 0.0019 23.3 2.3 35 280-314 2-39 (54)
211 PLN02470 acetolactate synthase 20.8 93 0.002 34.8 3.6 64 337-400 274-343 (585)
212 cd02766 MopB_3 The MopB_3 CD i 20.7 91 0.002 34.1 3.4 51 190-242 152-204 (501)
213 PF02150 RNA_POL_M_15KD: RNA p 20.7 50 0.0011 22.7 0.9 11 163-173 4-14 (35)
214 KOG4718|consensus 20.6 67 0.0015 31.3 2.0 31 137-169 195-225 (235)
215 PRK08611 pyruvate oxidase; Pro 20.4 96 0.0021 34.6 3.6 42 188-238 260-301 (576)
216 PRK08273 thiamine pyrophosphat 20.2 84 0.0018 35.2 3.1 64 336-400 266-333 (597)
217 PRK07979 acetolactate synthase 20.1 1E+02 0.0023 34.2 3.8 65 336-400 266-336 (574)
218 PRK06154 hypothetical protein; 20.0 92 0.002 34.7 3.3 63 336-400 274-342 (565)
No 1
>KOG2682|consensus
Probab=100.00 E-value=2.9e-66 Score=487.96 Aligned_cols=246 Identities=44% Similarity=0.717 Sum_probs=219.4
Q ss_pred cccCCCCCccCCCCccccccccCCCCCcchhcchhHHhhChHHHHHHHHHHCCCCCCCChhHHHHHHHhhhhhhhhhhcc
Q psy11832 2 FGAAGIPDFRSPGSGLYDNLEKYKLPHPMAIFELDYFKHRPEAFYTLAKELYPGSFKPTPCHYFLKLLHQKNLLLRHFTQ 81 (494)
Q Consensus 2 ~~~SGIPdFRg~~~Glw~~~~~~~~~~~~~~~~~~~f~~~P~~f~~~~~~~~~~~~~Pn~~h~~l~~l~~~~~~~~~~~~ 81 (494)
+|++|||||||+++|+|+|++++++|+||++|+.+||++||++||...+++|+++++||..||+++.
T Consensus 48 STsaGIPDFRSP~tGlY~NLqr~~LPYpEAiFel~yF~~nP~PF~tLAkELyPgnfkPt~~HYflrL------------- 114 (314)
T KOG2682|consen 48 STSAGIPDFRSPGTGLYDNLQRYHLPYPEAIFELSYFKKNPEPFFTLAKELYPGNFKPTITHYFLRL------------- 114 (314)
T ss_pred ccccCCCCCCCCCchhhhhHHHhcCCChhhhhccHHhhcCCchHHHHHHHhCCCCcCchhHHHHHHH-------------
Confidence 7999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred cccCCCCCChhHHHHHHHHhcCCccEEEeccccchHHhcCCCCCCEEEecCCcCccccCCCCcccchHHHHHHHhhcCCC
Q psy11832 82 VYWGSFKPTPCHYFLKLLHQKNLLLRHFTQNIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDYSVAWMKERIFAEVIP 161 (494)
Q Consensus 82 ~~~~~~~Pn~~H~~La~L~~~~~~~~iiTQNIDgLh~kAG~~~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~i~~~~~P 161 (494)
|++
T Consensus 115 -----------------l~D------------------------------------------------------------ 117 (314)
T KOG2682|consen 115 -----------------LHD------------------------------------------------------------ 117 (314)
T ss_pred -----------------Hcc------------------------------------------------------------
Confidence 222
Q ss_pred CCCCCCCeeeeeEEecCCCCChHHHHHHHhHcCCCCeEEEeCcCCChhhhhhhhhhhhhcCCCceEEEEecccccccccc
Q psy11832 162 TCEKCNGLVKPDIVFFGENLPSRYFHRVDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPKADLLLIMGTSLVVQPFC 241 (494)
Q Consensus 162 ~C~~Cgg~lrP~Vv~FgE~~~~~~~~~a~~~~~~aDlllvvGTSl~V~pa~~lv~~~~~~~~~a~lv~IN~~p~~~h~~a 241 (494)
T Consensus 118 -------------------------------------------------------------------------------- 117 (314)
T KOG2682|consen 118 -------------------------------------------------------------------------------- 117 (314)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccCCCCcchhhhhHhhCCCCCceeeccCccceeecC-CCCCccchHHHHhhhccCCCCCCccCCCCCCCCCCC
Q psy11832 242 SLVDKTNIRGSDSDNIDNLERIAGLPDDKLVEAHGSFHTSHCL-TCRKDYSVAWMKEGNLLGRMGITLGLHAGGLSSIPG 320 (494)
Q Consensus 242 ~l~~~~~l~~v~TQNID~Le~~AG~~~~~vvE~HGs~~~~~C~-~C~~~y~~~~~~~~i~~~~~~~p~c~~C~g~~~i~~ 320 (494)
||.|+++||||||||||.||++.+.+|||||||+++||+ .|++.|+.+|||.+|+...+ |+|+.|+| ++|
T Consensus 118 ----K~lL~r~YTQNIDtLER~aGv~d~~lvEAHGtFa~s~Ci~~C~~~yp~e~~ka~i~~~~v--pkC~vC~~---lVK 188 (314)
T KOG2682|consen 118 ----KGLLLRCYTQNIDTLERIAGVPDEDLVEAHGTFATSHCISSCRHEYPLEWMKAKIMSEVV--PKCEVCQG---LVK 188 (314)
T ss_pred ----ccHHHHHHhccchHHHHhcCCCHHHHHHhccceeeeeehhhhcCcCCHHHHHHHHHhccC--CCCchhhc---ccc
Confidence 345567899999999999999999999999999999999 69999999999999987655 68899998 599
Q ss_pred CcEEe--ccCChhHHHhhhcCCCCCCeEEEeccccccCCCCcchhhhcccCCCCCCCCCCcccEEEeCChhHHHHHHHHH
Q psy11832 321 GAEVF--SALCLEFGVHSASAPPHCPRLLINKEKVGVGSRNPLMGLLGLSEGLGFDNENNVRDVFLEGDCDSGCQKLADM 398 (494)
Q Consensus 321 p~ivf--e~l~~~~~~~~~~~~~~~Dlliv~GTSl~V~~~~P~a~l~~~~~g~~~~~~~~~~dl~i~g~~~~~~~~L~~~ 398 (494)
|+||| |+||.+|++....++..||++|||||||+| +|||+|+... +.-+|||
T Consensus 189 P~IVFfGE~LP~rF~e~~~~D~~~~dl~lV~GTSL~V---~PFAsLpe~v--------------------p~~v~Rl--- 242 (314)
T KOG2682|consen 189 PDIVFFGESLPARFFECMQSDFLKVDLLLVMGTSLQV---QPFASLPEKV--------------------PLSVPRL--- 242 (314)
T ss_pred ccEEEecCCccHHHHHHHhhcccccceEEEeccceee---eecccchhhh--------------------hhcCcee---
Confidence 99999 789999999999999999999999999999 9999886311 1122222
Q ss_pred hCCCchHHHhhcCccccCCCCCCCccceEEeCCcHHHHHHHHHHcCCchhhhhhhcccCCCCC
Q psy11832 399 LGWGIPLMGLLGLSEGLGFDNENNVRDVFLEGDCDSGCQKLADMLGWGIPLMGLLGLSEGLGF 461 (494)
Q Consensus 399 lg~~~~~~~l~~~~~~~~f~~~~~~~Dv~~lgdcD~~~~~l~~~lgW~~el~~l~~~~~~~~~ 461 (494)
|+|++....|--..++|||+|+||||+||++|+++|||++||++|+..+.++--
T Consensus 243 ---------LiNre~~Gp~~~~~r~rDv~~lgd~d~~~eaLvelLGW~eele~lv~~e~~~ld 296 (314)
T KOG2682|consen 243 ---------LINREKAGPFLGMIRYRDVAWLGDCDQGVEALVELLGWKEELEDLVRREHGSLD 296 (314)
T ss_pred ---------EecccccCccccCcccccchhhccHHHHHHHHHHHhCcHHHHHHHHHhhccccc
Confidence 677777777777788999999999999999999999999999999998877643
No 2
>PTZ00410 NAD-dependent SIR2; Provisional
Probab=100.00 E-value=2.1e-60 Score=484.04 Aligned_cols=204 Identities=46% Similarity=0.809 Sum_probs=180.5
Q ss_pred CcccCCCCCccCCCCccccccccCCCCCcchhcchhHHhhChHHHHHHHHHHCCCCCCCChhHHHHHHHhhhhhhhhhhc
Q psy11832 1 MFGAAGIPDFRSPGSGLYDNLEKYKLPHPMAIFELDYFKHRPEAFYTLAKELYPGSFKPTPCHYFLKLLHQKNLLLRHFT 80 (494)
Q Consensus 1 ~~~~SGIPdFRg~~~Glw~~~~~~~~~~~~~~~~~~~f~~~P~~f~~~~~~~~~~~~~Pn~~h~~l~~l~~~~~~~~~~~ 80 (494)
|+|+||||||||+++|+|+++.++++.+|+++|++++|++||+.||+|++.+..
T Consensus 40 ISteSGIPdFRs~~~Glw~~~~~~~~~~pe~~fs~~~f~~~P~~f~~~~r~~~~-------------------------- 93 (349)
T PTZ00410 40 ISVAAGIPDFRSPHTGIYAKLGKYNLNSPTDAFSLTLLREKPEVFYSIAREMDL-------------------------- 93 (349)
T ss_pred cccccCCCcccCcCCCcCccccccCCCCHHHHcCHHHHHHCHHHHHHHHHHhhc--------------------------
Confidence 689999999999944999998777777899999999999999999999876421
Q ss_pred ccccCCCCCChhHHHHHHHHhcCCccEEEeccccchHHhcCCCCCCEEEecCCcCccccCCCCcccchHHHHHHHhhcCC
Q psy11832 81 QVYWGSFKPTPCHYFLKLLHQKNLLLRHFTQNIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDYSVAWMKERIFAEVI 160 (494)
Q Consensus 81 ~~~~~~~~Pn~~H~~La~L~~~~~~~~iiTQNIDgLh~kAG~~~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~i~~~~~ 160 (494)
+-..++||++|++|+.|+++|++.+||||||||||++||+++++|+|+||++++++|..|++.|+.++....+....+
T Consensus 94 --~~~~a~Pn~aH~aLa~Le~~G~l~~vITQNIDgLh~rAG~~~~~ViElHGsl~~~~C~~C~~~~~~~~~~~~~~~~~v 171 (349)
T PTZ00410 94 --WPGHFQPTAVHHFIRLLADEGRLLRCCTQNIDGLERAAGVPPSLLVEAHGSFSAASCIECHTPYDIEQAYLEARSGKV 171 (349)
T ss_pred --ccCcCCCCHHHHHHHHHHhcCCcceEEecchhhhHhhcCCCcccEEEeccCCCeeEeCCCCCCcchhHHHHHhhcCCC
Confidence 012467888888888899999999999999999999999998999999999999999999999887766555555678
Q ss_pred CCCCCCCCeeeeeEEecCCCCChHHHHHHHhHcCCCCeEEEeCcCCChhhhhhhhhhhhhcCCCceEEEEeccccc
Q psy11832 161 PTCEKCNGLVKPDIVFFGENLPSRYFHRVDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPKADLLLIMGTSLV 236 (494)
Q Consensus 161 P~C~~Cgg~lrP~Vv~FgE~~~~~~~~~a~~~~~~aDlllvvGTSl~V~pa~~lv~~~~~~~~~a~lv~IN~~p~~ 236 (494)
|+|+.|||.+||+||||||.+|+..++ +.+++++||++|||||||+|+|++.++..+ ..++++|+||.+++.
T Consensus 172 P~C~~CgG~lRPdVVlFGE~lp~~~~~-a~~~~~~aDllLVIGTSL~V~Paa~l~~~a---~~~~pvviIN~e~~~ 243 (349)
T PTZ00410 172 PHCSTCGGIVKPDVVFFGENLPDAFFN-VHHDIPEAELLLIIGTSLQVHPFALLACVV---PKDVPRVLFNLERVG 243 (349)
T ss_pred CCCCCCCCccCCcEEecCCcCCHHHHH-HHHHHHhCCEEEEECcCCcccCHHHHHHHH---hcCCCEEEECccccC
Confidence 999999999999999999999998887 889999999999999999999999999887 357899999977663
No 3
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=100.00 E-value=1.1e-53 Score=418.95 Aligned_cols=204 Identities=55% Similarity=1.070 Sum_probs=183.9
Q ss_pred CcccCCCCCccCCCC-ccccccccCCCCCcchhcchhHHhhChHHHHHHHHHHCCCCCCCChhHHHHHHHhhhhhhhhhh
Q psy11832 1 MFGAAGIPDFRSPGS-GLYDNLEKYKLPHPMAIFELDYFKHRPEAFYTLAKELYPGSFKPTPCHYFLKLLHQKNLLLRHF 79 (494)
Q Consensus 1 ~~~~SGIPdFRg~~~-Glw~~~~~~~~~~~~~~~~~~~f~~~P~~f~~~~~~~~~~~~~Pn~~h~~l~~l~~~~~~~~~~ 79 (494)
|||+||||||||+ + |+|+++.+++..++++++++++|.+||+.||+|++.++.
T Consensus 11 iS~~SGIPdfR~~-~~G~w~~~~~~~~~~~~~~~~~~~f~~~p~~~~~~~~~~~~------------------------- 64 (235)
T cd01408 11 ISTSAGIPDFRSP-GTGLYANLARYNLPYPEAMFDISYFRKNPRPFYALAKELYP------------------------- 64 (235)
T ss_pred cccccCCCCcCCC-CCCcchhhhhccCCCHHHhcCHHHHHHChHHHHHHHHHHhc-------------------------
Confidence 7899999999999 7 999987776665789999999999999999999887542
Q ss_pred cccccCCCCCChhHHHHHHHHhcCCccEEEeccccchHHhcCCCCCCEEEecCCcCccccCCCCcccchHHHHHHHhhcC
Q psy11832 80 TQVYWGSFKPTPCHYFLKLLHQKNLLLRHFTQNIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDYSVAWMKERIFAEV 159 (494)
Q Consensus 80 ~~~~~~~~~Pn~~H~~La~L~~~~~~~~iiTQNIDgLh~kAG~~~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~i~~~~ 159 (494)
.+++||++|++|++|+++++.++||||||||||+|||+++++|+|+||++++++|+.|++.|+.++....+....
T Consensus 65 -----~~a~Pn~~H~~la~L~~~g~~~~viTQNiD~Lh~raG~~~~~V~elHG~l~~~~C~~C~~~~~~~~~~~~~~~~~ 139 (235)
T cd01408 65 -----GQFKPSVAHYFIKLLEDKGLLLRNYTQNIDTLERVAGVPDDRIIEAHGSFATAHCIKCKHKYPGDWMREDIFNQE 139 (235)
T ss_pred -----CcCCCCHHHHHHHHHHhcCCceEEEEeccchHHHHcCCCccCEEEeCcCCCccccccCCCcCCHHHHHHHHhCCC
Confidence 246777778888889999999999999999999999999899999999999999999999998877766665556
Q ss_pred CCCCCCCCCeeeeeEEecCCCCChHHHHHHHhHcCCCCeEEEeCcCCChhhhhhhhhhhhhcCCCceEEEEeccccccc
Q psy11832 160 IPTCEKCNGLVKPDIVFFGENLPSRYFHRVDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPKADLLLIMGTSLVVQ 238 (494)
Q Consensus 160 ~P~C~~Cgg~lrP~Vv~FgE~~~~~~~~~a~~~~~~aDlllvvGTSl~V~pa~~lv~~~~~~~~~a~lv~IN~~p~~~h 238 (494)
+|+||.|||.|||+||||||.+|+..++.+.+++++||++|||||||+|+|+++|++.++ .++++|+||.+|+...
T Consensus 140 ~p~C~~Cgg~lrP~Vv~FGE~lp~~~~~~~~~~~~~aDlllvvGTSl~V~pa~~l~~~~~---~~~~~v~iN~~~~~~~ 215 (235)
T cd01408 140 VPKCPRCGGLVKPDIVFFGESLPSRFFSHMEEDKEEADLLIVIGTSLKVAPFASLPSRVP---SEVPRVLINREPVGHL 215 (235)
T ss_pred CccCCCCCCCccCcEEECCCCCCHHHHHHHHHHHhcCCEEEEECCCCeeccHHHHHHHHh---CCCcEEEEeCCCCCCC
Confidence 899999999999999999999999988999999999999999999999999999998882 5789999999999865
No 4
>cd01413 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The Sir2 homolog from the archaea Sulfolobus solftaricus deacetylates the non-specific DNA protein Alba to mediate transcription repression.
Probab=100.00 E-value=8.3e-51 Score=395.47 Aligned_cols=203 Identities=33% Similarity=0.631 Sum_probs=180.8
Q ss_pred CcccCCCCCccCCCCccccccccCCCCCcchhcchhHHhhChHHHHHHHHHHCCCCCCCChhHHHHHHHhhhhhhhhhhc
Q psy11832 1 MFGAAGIPDFRSPGSGLYDNLEKYKLPHPMAIFELDYFKHRPEAFYTLAKELYPGSFKPTPCHYFLKLLHQKNLLLRHFT 80 (494)
Q Consensus 1 ~~~~SGIPdFRg~~~Glw~~~~~~~~~~~~~~~~~~~f~~~P~~f~~~~~~~~~~~~~Pn~~h~~l~~l~~~~~~~~~~~ 80 (494)
|+|+||||||||+ +|+|+++ ++++++++++|.+||+.||+|+++++..
T Consensus 15 iS~~sGIp~FR~~-~glw~~~------~~~~~~~~~~f~~~p~~~w~~~~~~~~~------------------------- 62 (222)
T cd01413 15 ISTESGIPDFRSP-DGLWKKY------DPEEVASIDYFYRNPEEFWRFYKEIILG------------------------- 62 (222)
T ss_pred hhhhhCCCCccCc-CCCcCCC------CHHHhccHHHHhHCHHHHHHHHHHHhcc-------------------------
Confidence 7899999999999 5999864 3789999999999999999999876421
Q ss_pred ccccCCCCCChhHHHHHHHHhcCCccEEEeccccchHHhcCCCCCCEEEecCCcCccccCCCCcccchHHHHHHHhhcCC
Q psy11832 81 QVYWGSFKPTPCHYFLKLLHQKNLLLRHFTQNIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDYSVAWMKERIFAEVI 160 (494)
Q Consensus 81 ~~~~~~~~Pn~~H~~La~L~~~~~~~~iiTQNIDgLh~kAG~~~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~i~~~~~ 160 (494)
+..++||++|++|++|++++++++||||||||||+||| .++|+|+||++++++|++|++.|+.+.. ..+....+
T Consensus 63 ---~~~a~Pn~~H~~La~L~~~~~~~~viTQNiDgLh~~AG--~~~v~elHG~l~~~~C~~C~~~~~~~~~-~~~~~~~~ 136 (222)
T cd01413 63 ---LLEAQPNKAHYFLAELEKQGIIKAIITQNIDGLHQRAG--SKNVIELHGTLQTAYCVNCGSKYDLEEV-KYAKKHEV 136 (222)
T ss_pred ---cCCCCCCHHHHHHHHHHhcCCCeEEEEeccchhhHHcC--CCcEEEccCCcCcceECCCCCCcchhHH-HHhccCCC
Confidence 23678999999999999999999999999999999999 4799999999999999999999887665 22334568
Q ss_pred CCCCCCCCeeeeeEEecCCCCChHHHHHHHhHcCCCCeEEEeCcCCChhhhhhhhhhhhhcCCCceEEEEeccccccccc
Q psy11832 161 PTCEKCNGLVKPDIVFFGENLPSRYFHRVDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPKADLLLIMGTSLVVQPF 240 (494)
Q Consensus 161 P~C~~Cgg~lrP~Vv~FgE~~~~~~~~~a~~~~~~aDlllvvGTSl~V~pa~~lv~~~~~~~~~a~lv~IN~~p~~~h~~ 240 (494)
|+||.|||.+||+||+|||.+|+..++.+.+++++||++||||||++|+|+++|+..+ ...++++|+||.+|+.....
T Consensus 137 p~C~~Cgg~lrP~Vv~fgE~lp~~~~~~a~~~~~~~Dl~lvvGTSl~V~p~~~l~~~a--~~~g~~~i~iN~~~~~~~~~ 214 (222)
T cd01413 137 PRCPKCGGIIRPDVVLFGEPLPQALLREAIEAAKEADLFIVLGSSLVVYPANLLPLIA--KENGAKLVIVNADETPFDYI 214 (222)
T ss_pred CcCCCCCCccCCCEEECCCCCCHHHHHHHHHHHhcCCEEEEEccCCEeccHhHHHHHH--HHcCCeEEEEcCCCCCCCcc
Confidence 9999999999999999999999999999999999999999999999999999999988 46789999999999987666
Q ss_pred ccc
Q psy11832 241 CSL 243 (494)
Q Consensus 241 a~l 243 (494)
+.+
T Consensus 215 ~~~ 217 (222)
T cd01413 215 ADL 217 (222)
T ss_pred eeE
Confidence 543
No 5
>COG0846 SIR2 NAD-dependent protein deacetylases, SIR2 family [Transcription]
Probab=100.00 E-value=4.9e-51 Score=399.99 Aligned_cols=208 Identities=33% Similarity=0.538 Sum_probs=184.2
Q ss_pred CcccCCCCCccCCCCcccc-ccccCCCCCcchhcchhHHhhChHHHHHHHHHHCCCCCCCChhHHHHHHHhhhhhhhhhh
Q psy11832 1 MFGAAGIPDFRSPGSGLYD-NLEKYKLPHPMAIFELDYFKHRPEAFYTLAKELYPGSFKPTPCHYFLKLLHQKNLLLRHF 79 (494)
Q Consensus 1 ~~~~SGIPdFRg~~~Glw~-~~~~~~~~~~~~~~~~~~f~~~P~~f~~~~~~~~~~~~~Pn~~h~~l~~l~~~~~~~~~~ 79 (494)
|||+|||||||+. +|+|. ++ +|++++++++|++||+.||+|+.++...
T Consensus 23 iSa~sGIpdFR~~-~Gl~~~~~------~p~~l~s~~~f~~~p~~~~~f~~~~~~~------------------------ 71 (250)
T COG0846 23 ISAESGIPDFRSK-DGLWSDKY------DPEDLASPSGFRRDPELVWDFYSERLRL------------------------ 71 (250)
T ss_pred cccccCCCcccCC-CCCCCCCC------CHHHHhCHHHHhhCHHHHHHHHHHHHHh------------------------
Confidence 7999999999999 69998 43 5999999999999999999999776421
Q ss_pred cccccCCCCCChhHHHHHHHHhcCCccEEEeccccchHHhcCCCCCCEEEecCCcCccccCCCCcccchHHHHHHHhhcC
Q psy11832 80 TQVYWGSFKPTPCHYFLKLLHQKNLLLRHFTQNIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDYSVAWMKERIFAEV 159 (494)
Q Consensus 80 ~~~~~~~~~Pn~~H~~La~L~~~~~~~~iiTQNIDgLh~kAG~~~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~i~~~~ 159 (494)
...++||++|++|++|++++++++||||||||||++||+ .+|+|+||++...+|..|+..+..+++........
T Consensus 72 ----~~~a~Pn~~H~~la~le~~~~~~~iiTQNiD~Lhe~AGs--~~Vi~lHGsl~~~~C~~C~~~~~~~~~~~~~~~~~ 145 (250)
T COG0846 72 ----LYLAQPNKAHYALAELEDKGKLLRIITQNIDGLHERAGS--KNVIELHGSLKRVRCSKCGNQYYDEDVIKFIEDGL 145 (250)
T ss_pred ----hhcCCCCHHHHHHHHHhhcCCceEEEecccchHHHHcCC--CcEEEeccceeeeEeCCCcCccchhhhhhhcccCC
Confidence 123788888888999999999999999999999999996 59999999999999999999887666544444446
Q ss_pred CCCCCCCCC-eeeeeEEecCCCCChHHHHHHHhHcCCCCeEEEeCcCCChhhhhhhhhhhhhcCCCceEEEEeccccccc
Q psy11832 160 IPTCEKCNG-LVKPDIVFFGENLPSRYFHRVDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPKADLLLIMGTSLVVQ 238 (494)
Q Consensus 160 ~P~C~~Cgg-~lrP~Vv~FgE~~~~~~~~~a~~~~~~aDlllvvGTSl~V~pa~~lv~~~~~~~~~a~lv~IN~~p~~~h 238 (494)
+|+||.||+ .+||+||||||.+|...++.+.++++.||++||+|||+.|+|++.++..+ ..+++.+|.||..++.+.
T Consensus 146 ~p~C~~Cg~~~lrP~VV~fGE~lp~~~~~~~~~~~~~~d~liviGTSl~V~Paa~~p~~~--~~~g~~~i~iN~~~~~~~ 223 (250)
T COG0846 146 IPRCPKCGGPVLRPDVVWFGEPLPASFLDEALEALKEADLLIVIGTSLKVYPAAGLPELA--KRRGAKVIEINLEPTRLD 223 (250)
T ss_pred CCcCccCCCccccCCEEEeCCCCCHHHHHHHHHHhccCCEEEEECcceEEcChhhhhHHH--HhcCCEEEEECCCcccCc
Confidence 899999999 99999999999999999999999999999999999999999999988856 689999999999999988
Q ss_pred ccccccccc
Q psy11832 239 PFCSLVDKT 247 (494)
Q Consensus 239 ~~a~l~~~~ 247 (494)
+.+.+.-.+
T Consensus 224 ~~~d~~i~~ 232 (250)
T COG0846 224 PIADEVIRG 232 (250)
T ss_pred chhHHHHHh
Confidence 877655443
No 6
>PTZ00409 Sir2 (Silent Information Regulator) protein; Provisional
Probab=100.00 E-value=1.4e-50 Score=403.31 Aligned_cols=204 Identities=25% Similarity=0.459 Sum_probs=175.7
Q ss_pred CcccCCCCCccCCCCccccccccCCCCCcchhcchhHHhhChHHHHHHHHHHCCCCCCCChhHHHHHHHhhhhhhhhhhc
Q psy11832 1 MFGAAGIPDFRSPGSGLYDNLEKYKLPHPMAIFELDYFKHRPEAFYTLAKELYPGSFKPTPCHYFLKLLHQKNLLLRHFT 80 (494)
Q Consensus 1 ~~~~SGIPdFRg~~~Glw~~~~~~~~~~~~~~~~~~~f~~~P~~f~~~~~~~~~~~~~Pn~~h~~l~~l~~~~~~~~~~~ 80 (494)
|||+||||||||+++|+|+++ +|++++++.+|.+||+.||+|++++..
T Consensus 39 iSteSGIPdFR~~~~Glw~~~------~~~~~~t~~~f~~~p~~~~~~~~~~~~-------------------------- 86 (271)
T PTZ00409 39 TSAESNIPSFRGPSSSIWSKY------DPKIYGTIWGFWKYPEKIWEVIRDISS-------------------------- 86 (271)
T ss_pred echhhCCCcccCCCCccccCC------CHHHhccHHHHHHChHHHHHHHHHhhh--------------------------
Confidence 789999999999845999875 478999999999999999999876421
Q ss_pred ccccCCCCCChhHHHHHHHHhcCCccEEEeccccchHHhcCCCCCCEEEecCCcCccccCCCCcccchHHHH-HH---Hh
Q psy11832 81 QVYWGSFKPTPCHYFLKLLHQKNLLLRHFTQNIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDYSVAWMK-ER---IF 156 (494)
Q Consensus 81 ~~~~~~~~Pn~~H~~La~L~~~~~~~~iiTQNIDgLh~kAG~~~~~v~elHG~~~~~~C~~C~~~~~~~~~~-~~---i~ 156 (494)
..+++||++|++|++|+++|+..+||||||||||++||. ++|+|+|||+++.+|+.|++.++.+... .. ..
T Consensus 87 ---~~~a~PN~~H~aLa~Le~~g~~~~vITQNIDgLh~rAGs--~~V~ElHG~l~~~~C~~C~~~~~~~~~~~~~~~~~~ 161 (271)
T PTZ00409 87 ---DYEIELNPGHVALSTLESLGYLKFVVTQNVDGLHEESGN--TKVIPLHGSVFEARCCTCRKTIQLNKIMLQKTSHFM 161 (271)
T ss_pred ---cccCCCCHHHHHHHHHHhcCCCcEEEeccccchHhHcCC--CcEEEeccCcCcceeCCCCCCcccCHHHHhhhhhhc
Confidence 135788999999999999999999999999999999994 7999999999999999999987644322 11 11
Q ss_pred hcCCCCCCCCCCeeeeeEEecCCCCChHHHHHHHhHcCCCCeEEEeCcCCChhhhhhhhhhhhhcCCCceEEEEeccccc
Q psy11832 157 AEVIPTCEKCNGLVKPDIVFFGENLPSRYFHRVDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPKADLLLIMGTSLV 236 (494)
Q Consensus 157 ~~~~P~C~~Cgg~lrP~Vv~FgE~~~~~~~~~a~~~~~~aDlllvvGTSl~V~pa~~lv~~~~~~~~~a~lv~IN~~p~~ 236 (494)
...+|+|+ |||.+||+||||||.+|...++.|.+++++||++||||||++|+|+++|+..+ ...++++|+||.+|+.
T Consensus 162 ~~~~P~C~-Cgg~lrP~VV~FGE~lp~~~~~~a~~~~~~aDlllviGTSl~V~pa~~l~~~a--~~~g~~vi~IN~~~t~ 238 (271)
T PTZ00409 162 HQLPPECP-CGGIFKPNVILFGEVIPKSLLKQAEKEIDKCDLLLVVGTSSSVSTATNLCYRA--HRKKKKIVEVNISKTY 238 (271)
T ss_pred cCCCCCCC-CCCcccCcEEEeCCcCCHHHHHHHHHHHHcCCEEEEECCCCcccCHHHHHHHH--HHcCCCEEEECCCCCC
Confidence 23479999 99999999999999999999999999999999999999999999999999987 5678999999999998
Q ss_pred cc-cccccc
Q psy11832 237 VQ-PFCSLV 244 (494)
Q Consensus 237 ~h-~~a~l~ 244 (494)
.. ..+.+.
T Consensus 239 ~~~~~~d~~ 247 (271)
T PTZ00409 239 ITNRISDYH 247 (271)
T ss_pred CCCccccEE
Confidence 65 344433
No 7
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=100.00 E-value=2.1e-50 Score=397.57 Aligned_cols=208 Identities=35% Similarity=0.598 Sum_probs=184.5
Q ss_pred CcccCCCCCccCCCCccccccccCCCCCcchhcchhHHhhChHHHHHHHHHHCCCCCCCChhHHHHHHHhhhhhhhhhhc
Q psy11832 1 MFGAAGIPDFRSPGSGLYDNLEKYKLPHPMAIFELDYFKHRPEAFYTLAKELYPGSFKPTPCHYFLKLLHQKNLLLRHFT 80 (494)
Q Consensus 1 ~~~~SGIPdFRg~~~Glw~~~~~~~~~~~~~~~~~~~f~~~P~~f~~~~~~~~~~~~~Pn~~h~~l~~l~~~~~~~~~~~ 80 (494)
|+|+||||||||+ +|+|+++ +++++++.+|.++|+.||+|+++.+.
T Consensus 22 iS~~SGIp~fR~~-~gl~~~~-------~~~~~~~~~~~~~p~~~w~~~~~~~~-------------------------- 67 (244)
T PRK14138 22 ISTPSGIPDFRGP-QGIYKKY-------PQNVFDIDFFYSHPEEFYRFAKEGIF-------------------------- 67 (244)
T ss_pred cchhhCCCCcCCC-CCCccCC-------cccccCHHHHHhCHHHHHHHHHHhhc--------------------------
Confidence 7999999999999 6999863 57889999999999999999876431
Q ss_pred ccccCCCCCChhHHHHHHHHhcCCccEEEeccccchHHhcCCCCCCEEEecCCcCccccCCCCcccchHHHHHHHhhcCC
Q psy11832 81 QVYWGSFKPTPCHYFLKLLHQKNLLLRHFTQNIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDYSVAWMKERIFAEVI 160 (494)
Q Consensus 81 ~~~~~~~~Pn~~H~~La~L~~~~~~~~iiTQNIDgLh~kAG~~~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~i~~~~~ 160 (494)
.+.+++||.+|++|+.|+++|+..+||||||||||++||. ++|+|+||++++++|++|++.|+.+.....+....+
T Consensus 68 --~~~~~~Pn~~H~ala~L~~~g~~~~viTQNIDgLh~~aG~--~~VielHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~ 143 (244)
T PRK14138 68 --PMLEAKPNLAHVLLAKLEEKGLIEAVITQNIDRLHQKAGS--KKVIELHGNVEEYYCVRCGKRYTVEDVIEKLEKSDV 143 (244)
T ss_pred --ccccCCCCHHHHHHHHHHHcCCceEEEeecccChhhHcCC--CeEEEccCCcCeeEECCCCCcccHHHHHHHHhcCCC
Confidence 2346789999999999999999999999999999999994 799999999999999999999988776655555568
Q ss_pred CCCCCCCCeeeeeEEecCCCCChHHHHHHHhHcCCCCeEEEeCcCCChhhhhhhhhhhhhcCCCceEEEEeccccccccc
Q psy11832 161 PTCEKCNGLVKPDIVFFGENLPSRYFHRVDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPKADLLLIMGTSLVVQPF 240 (494)
Q Consensus 161 P~C~~Cgg~lrP~Vv~FgE~~~~~~~~~a~~~~~~aDlllvvGTSl~V~pa~~lv~~~~~~~~~a~lv~IN~~p~~~h~~ 240 (494)
|+||.|||.+||+||||||.+|...++.+.+++++||++|||||||+|+|+++|+..+ ...++++|+||.+|+.....
T Consensus 144 p~Cp~Cgg~lrP~Vv~FgE~~p~~~~~~~~~~~~~aDl~lviGTSl~V~pa~~l~~~~--~~~g~~~i~iN~~~t~~d~~ 221 (244)
T PRK14138 144 PRCDDCSGLIRPNIVFFGEALPQDALREAIRLSSKASLMIVMGSSLVVYPAAELPLIT--VRSGGKLVIVNLGETPLDDI 221 (244)
T ss_pred CCCCCCCCeECCCEEECCCcCCHHHHHHHHHHHhcCCEEEEeCcCCeeecHhHHHHHH--HHcCCeEEEEcCCCCCCCcc
Confidence 9999999999999999999999999999999999999999999999999999999887 45789999999999998877
Q ss_pred cccccccc
Q psy11832 241 CSLVDKTN 248 (494)
Q Consensus 241 a~l~~~~~ 248 (494)
+.+.-.+.
T Consensus 222 ~~~~i~~~ 229 (244)
T PRK14138 222 ATLKYNMD 229 (244)
T ss_pred eeEEEeCC
Confidence 76544443
No 8
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=100.00 E-value=1.6e-49 Score=394.57 Aligned_cols=208 Identities=30% Similarity=0.489 Sum_probs=175.6
Q ss_pred CcccCCCCCccCCCCccccccccCCCCCcchhcchhHHhhChHHHHHHHHHHCCCCCCCChhHHHHHHHhhhhhhhhhhc
Q psy11832 1 MFGAAGIPDFRSPGSGLYDNLEKYKLPHPMAIFELDYFKHRPEAFYTLAKELYPGSFKPTPCHYFLKLLHQKNLLLRHFT 80 (494)
Q Consensus 1 ~~~~SGIPdFRg~~~Glw~~~~~~~~~~~~~~~~~~~f~~~P~~f~~~~~~~~~~~~~Pn~~h~~l~~l~~~~~~~~~~~ 80 (494)
|||+||||||||+ +|+|++. + ++ +++..|.+||+.+|.|+...+..
T Consensus 19 iSt~SGIPdFR~~-~Glw~~~--~---~~---~~~~~f~~~p~~~~~~~~~~~~~------------------------- 64 (260)
T cd01409 19 ISTESGIPDYRSE-GGLYSRT--F---RP---MTHQEFMRSPAARQRYWARSFVG------------------------- 64 (260)
T ss_pred eehhhCCCCCCCc-CCcccCC--C---CC---CCHHHHHhCcHHHHHHHHHHHhh-------------------------
Confidence 7999999999999 5999973 1 13 46689999999888776543210
Q ss_pred ccccCCCCCChhHHHHHHHHhcCCccEEEeccccchHHhcCCCCCCEEEecCCcCccccCCCCcccchHHHHHHHh----
Q psy11832 81 QVYWGSFKPTPCHYFLKLLHQKNLLLRHFTQNIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDYSVAWMKERIF---- 156 (494)
Q Consensus 81 ~~~~~~~~Pn~~H~~La~L~~~~~~~~iiTQNIDgLh~kAG~~~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~i~---- 156 (494)
+..+..++||++|++|++|+++|+..+||||||||||++||+ ++|+|+|||+++++|..|++.++.+++...+.
T Consensus 65 ~~~~~~~~Pn~~H~~la~L~~~g~~~~viTQNIDgLh~~aG~--~~vielHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~ 142 (260)
T cd01409 65 WPRFSAAQPNAAHRALAALEAAGRLHGLITQNVDGLHTKAGS--RNVVELHGSLHRVVCLSCGFRTPRAELQDRLEALNP 142 (260)
T ss_pred hhhhccCCCCHHHHHHHHHHHcCCCeeEEeeccchhHHHcCC--CCEEEEeeecCEEEeCCCcCccCHHHHHHHHhhcCc
Confidence 011246899999999999999999999999999999999996 69999999999999999999988665543221
Q ss_pred -----------------------hcCCCCCCCCCCeeeeeEEecCCCCChHHHHHHHhHcCCCCeEEEeCcCCChhhhhh
Q psy11832 157 -----------------------AEVIPTCEKCNGLVKPDIVFFGENLPSRYFHRVDVDFPKADLLLIMGTSLVVQPFCS 213 (494)
Q Consensus 157 -----------------------~~~~P~C~~Cgg~lrP~Vv~FgE~~~~~~~~~a~~~~~~aDlllvvGTSl~V~pa~~ 213 (494)
...+|+||.|||.+||+||||||.+|...++.|.+++++||++|||||||+|+|+++
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~C~~Cgg~lrP~VV~FGE~lp~~~~~~a~~~~~~aDlllviGTSl~V~pa~~ 222 (260)
T cd01409 143 GFAEQAAGQAPDGDVDLEDEQVAGFRVPECERCGGVLKPDVVFFGENVPRDRVVTAAARLAEADALLVLGSSLMVYSGYR 222 (260)
T ss_pred chhhhhcccCCCcccccchhhcccCCCCCCCCCCCEECCCEEECCCCCCHHHHHHHHHHHhcCCEEEEeCcCceecchhh
Confidence 124799999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhcCCCceEEEEeccccccccccccccc
Q psy11832 214 LVDKVDVDFPKADLLLIMGTSLVVQPFCSLVDK 246 (494)
Q Consensus 214 lv~~~~~~~~~a~lv~IN~~p~~~h~~a~l~~~ 246 (494)
++..+ ...|+++|+||.+|+.....+.+.-.
T Consensus 223 l~~~a--~~~g~~viiIN~~~t~~d~~a~~~i~ 253 (260)
T cd01409 223 FVLAA--AEAGLPIAIVNIGPTRADHLATLKVD 253 (260)
T ss_pred HHHHH--HHCCCcEEEEcCCCCCCCccccEEEe
Confidence 99988 45699999999999998776654433
No 9
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=100.00 E-value=2.6e-49 Score=380.49 Aligned_cols=190 Identities=32% Similarity=0.468 Sum_probs=165.5
Q ss_pred CcccCCCCCccCCCCccccccccCCCCCcchhcchhHHhhChHHHHHHHHHHCCCCCCCChhHHHHHHHhhhhhhhhhhc
Q psy11832 1 MFGAAGIPDFRSPGSGLYDNLEKYKLPHPMAIFELDYFKHRPEAFYTLAKELYPGSFKPTPCHYFLKLLHQKNLLLRHFT 80 (494)
Q Consensus 1 ~~~~SGIPdFRg~~~Glw~~~~~~~~~~~~~~~~~~~f~~~P~~f~~~~~~~~~~~~~Pn~~h~~l~~l~~~~~~~~~~~ 80 (494)
|||+||||||||+ +|+|++.. + |.++|..+|.|+
T Consensus 11 iS~~SGIP~fR~~-~Glw~~~~------~--------~~~~~~~~~~~~------------------------------- 44 (206)
T cd01410 11 ISTSAGIPDFRGP-NGVWTLLP------E--------DKGRRRFSWRFR------------------------------- 44 (206)
T ss_pred ccHhhCCCcccCc-CCCcccCC------c--------cccChHHHhhhh-------------------------------
Confidence 7899999999999 69998642 1 566787777643
Q ss_pred ccccCCCCCChhHHHHHHHHhcCCccEEEeccccchHHhcCCCCCCEEEecCCcCccccCCCCcccchHHHHHHHh-hcC
Q psy11832 81 QVYWGSFKPTPCHYFLKLLHQKNLLLRHFTQNIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDYSVAWMKERIF-AEV 159 (494)
Q Consensus 81 ~~~~~~~~Pn~~H~~La~L~~~~~~~~iiTQNIDgLh~kAG~~~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~i~-~~~ 159 (494)
.++||++|++|++|+++++.++||||||||||++||+++++|+|+||++++++|++|++.++.++....+. ...
T Consensus 45 -----~~~Pn~~H~~La~l~~~g~~~~viTQNID~Lh~~AG~~~~~vielHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~ 119 (206)
T cd01410 45 -----RAEPTLTHMALVELERAGLLKFVISQNVDGLHLRSGLPREKLSELHGNMFIEVCKSCGPEYVRDDVVETRGDKET 119 (206)
T ss_pred -----cCCCCHHHHHHHHHHHCCCCceEEecCccchHhHcCcCcccEEEecCCcCcccCCCCCCccchHHHHHHhhcCCC
Confidence 24677777777779988999999999999999999998899999999999999999999988776665543 346
Q ss_pred CCCCCCCCCeeeeeEEecCCCCChHHHHHHHhHcCCCCeEEEeCcCCChhhhhhhhhhhhhcCCCceEEEEecccccccc
Q psy11832 160 IPTCEKCNGLVKPDIVFFGENLPSRYFHRVDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPKADLLLIMGTSLVVQP 239 (494)
Q Consensus 160 ~P~C~~Cgg~lrP~Vv~FgE~~~~~~~~~a~~~~~~aDlllvvGTSl~V~pa~~lv~~~~~~~~~a~lv~IN~~p~~~h~ 239 (494)
+|+|+.|||.+||+||||||.+|...++.+.+++++||++||||||++|+|+++|+..+ ...++++|+||.+|+....
T Consensus 120 ~p~C~~Cgg~lrP~VV~FgE~lp~~~~~~a~~~~~~aDlllviGTSl~V~pa~~l~~~~--~~~g~~vi~iN~~~~~~d~ 197 (206)
T cd01410 120 GRRCHACGGILKDTIVDFGERLPPENWMGAAAAACRADLFLCLGTSLQVTPAANLPLKA--ARAGGRLVIVNLQPTPKDK 197 (206)
T ss_pred CCcCCCCcCccCCcEEECCCCCCHHHHHHHHHHHhcCCEEEEECcCceehhHHHHHHHH--HhcCCeEEEECCCCCCCCc
Confidence 89999999999999999999999999999999999999999999999999999999887 4678999999999999776
Q ss_pred cccc
Q psy11832 240 FCSL 243 (494)
Q Consensus 240 ~a~l 243 (494)
.+.+
T Consensus 198 ~~d~ 201 (206)
T cd01410 198 LADL 201 (206)
T ss_pred cccE
Confidence 6543
No 10
>cd01407 SIR2-fam SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer.
Probab=100.00 E-value=5.3e-49 Score=381.97 Aligned_cols=201 Identities=37% Similarity=0.624 Sum_probs=178.0
Q ss_pred CcccCCCCCccCCCCccccccccCCCCCcchh-cchhHHhhChHHHHHHHHHHCCCCCCCChhHHHHHHHhhhhhhhhhh
Q psy11832 1 MFGAAGIPDFRSPGSGLYDNLEKYKLPHPMAI-FELDYFKHRPEAFYTLAKELYPGSFKPTPCHYFLKLLHQKNLLLRHF 79 (494)
Q Consensus 1 ~~~~SGIPdFRg~~~Glw~~~~~~~~~~~~~~-~~~~~f~~~P~~f~~~~~~~~~~~~~Pn~~h~~l~~l~~~~~~~~~~ 79 (494)
|+|+||||||||+ +|+|+++. ++.+ +++++|+++|+.||+|++.+..
T Consensus 11 iS~~sGIpdfR~~-~G~~~~~~------~~~~~~~~~~~~~~p~~~~~~~~~~~~------------------------- 58 (218)
T cd01407 11 ISTESGIPDFRSP-GGLWARLD------PEELAFSPEAFRRDPELFWGFYRERRY------------------------- 58 (218)
T ss_pred cccccCCCcccCC-CCccccCC------hhhccCCHHHHHHCHHHHHHHHHHhhh-------------------------
Confidence 7899999999999 69999864 3444 4899999999999999876531
Q ss_pred cccccCCCCCChhHHHHHHHHhcCCccEEEeccccchHHhcCCCCCCEEEecCCcCccccCCCCcccchHHHHHHHhhcC
Q psy11832 80 TQVYWGSFKPTPCHYFLKLLHQKNLLLRHFTQNIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDYSVAWMKERIFAEV 159 (494)
Q Consensus 80 ~~~~~~~~~Pn~~H~~La~L~~~~~~~~iiTQNIDgLh~kAG~~~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~i~~~~ 159 (494)
+.+++||++|++|++|+++++.++||||||||||++||++ +|+|+||++..++|+.|++.++.+.....+....
T Consensus 59 ----~~~~~Pn~~H~~L~~L~~~~~~~~viTQNiDgL~~~aG~~--~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~ 132 (218)
T cd01407 59 ----PLNAQPNPAHRALAELERKGKLKRVITQNVDGLHQRAGSP--KVIELHGSLFRVRCTKCGKEYPRDELQADIDREE 132 (218)
T ss_pred ----hccCCCCHHHHHHHHHHhcCCCeeEEEeccchhHHHcCCC--CEEECcCCcCcceeCCCcCCCcHHHHhHhhccCC
Confidence 3467899999999999999999999999999999999985 9999999999999999999987765544555667
Q ss_pred CCCCCCCCCeeeeeEEecCCCCChHHHHHHHhHcCCCCeEEEeCcCCChhhhhhhhhhhhhcCCCceEEEEecccccccc
Q psy11832 160 IPTCEKCNGLVKPDIVFFGENLPSRYFHRVDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPKADLLLIMGTSLVVQP 239 (494)
Q Consensus 160 ~P~C~~Cgg~lrP~Vv~FgE~~~~~~~~~a~~~~~~aDlllvvGTSl~V~pa~~lv~~~~~~~~~a~lv~IN~~p~~~h~ 239 (494)
+|+||.|||.+||+||+|||.+|.. ++++.++++++|++||||||+.|+|++++++.+ ..+++++|+||.+|+....
T Consensus 133 ~p~C~~Cg~~lrP~Vv~fgE~~p~~-~~~a~~~~~~~Dl~lvlGTSl~V~p~~~l~~~~--~~~~~~~i~iN~~~~~~~~ 209 (218)
T cd01407 133 VPRCPKCGGLLRPDVVFFGESLPEE-LDEAAEALAKADLLLVIGTSLQVYPAAGLPLYA--PERGAPVVIINLEPTPADR 209 (218)
T ss_pred CCcCCCCCCccCCCeEECCCCCcHH-HHHHHHHHhcCCEEEEeCCCcccccHHHHHHHH--HHCCCeEEEECCCCCCCCc
Confidence 9999999999999999999999999 999999999999999999999999999999998 3469999999999999765
Q ss_pred ccc
Q psy11832 240 FCS 242 (494)
Q Consensus 240 ~a~ 242 (494)
.+.
T Consensus 210 ~~d 212 (218)
T cd01407 210 KAD 212 (218)
T ss_pred cce
Confidence 443
No 11
>cd01411 SIR2H SIR2H: Uncharacterized prokaryotic Sir2 homologs from several gram positive bacterial species and Fusobacteria; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=100.00 E-value=1.8e-48 Score=379.75 Aligned_cols=199 Identities=36% Similarity=0.561 Sum_probs=175.4
Q ss_pred CcccCCCCCccCCCCccccccccCCCCCcchhcchhHHhhChHHHHHHHHHHCCCCCCCChhHHHHHHHhhhhhhhhhhc
Q psy11832 1 MFGAAGIPDFRSPGSGLYDNLEKYKLPHPMAIFELDYFKHRPEAFYTLAKELYPGSFKPTPCHYFLKLLHQKNLLLRHFT 80 (494)
Q Consensus 1 ~~~~SGIPdFRg~~~Glw~~~~~~~~~~~~~~~~~~~f~~~P~~f~~~~~~~~~~~~~Pn~~h~~l~~l~~~~~~~~~~~ 80 (494)
|+|+||||||||+ +|+|+++. .+ ++++++++++|.++|+.||+|+++.+
T Consensus 19 iS~~sGIpdfR~~-~G~w~~~~--~~-~~~~~~~~~~~~~~p~~~~~~~~~~~--------------------------- 67 (225)
T cd01411 19 VSTASGIPDYRSK-NGLYNEIY--KY-SPEYLLSHDFLEREPEKFYQFVKENL--------------------------- 67 (225)
T ss_pred cccccCCCCccCC-CcCccCcC--CC-ChHHeecHHHHHHCHHHHHHHHHHHh---------------------------
Confidence 7999999999999 69999864 22 58999999999999999999887642
Q ss_pred ccccCCCCCChhHHHHHHHHhcCCccEEEeccccchHHhcCCCCCCEEEecCCcCccccCCCCcccchHHHHHHHhhcCC
Q psy11832 81 QVYWGSFKPTPCHYFLKLLHQKNLLLRHFTQNIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDYSVAWMKERIFAEVI 160 (494)
Q Consensus 81 ~~~~~~~~Pn~~H~~La~L~~~~~~~~iiTQNIDgLh~kAG~~~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~i~~~~~ 160 (494)
.+.+++||.+|++|++|++++ +++||||||||||++|| .++|+|+||+++..+|++|++.++.+.. ..+
T Consensus 68 --~~~~~~Pn~~H~~La~L~~~~-~~~viTQNvD~Lh~~aG--~~~v~elHG~~~~~~C~~C~~~~~~~~~------~~~ 136 (225)
T cd01411 68 --YFPDAKPNIIHQKMAELEKMG-LKAVITQNIDGLHQKAG--SKNVVEFHGSLYRIYCTVCGKTVDWEEY------LKS 136 (225)
T ss_pred --hCCCCCCCHHHHHHHHHHHcC-CcEEEEeccchhhhhcC--CCcEEEeCCCcCeeEeCCCCCccchhhc------CCC
Confidence 134678899999999999877 89999999999999999 4799999999999999999988765432 247
Q ss_pred CCCCCCCCeeeeeEEecCCCCChHHHHHHHhHcCCCCeEEEeCcCCChhhhhhhhhhhhhcCCCceEEEEeccccccccc
Q psy11832 161 PTCEKCNGLVKPDIVFFGENLPSRYFHRVDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPKADLLLIMGTSLVVQPF 240 (494)
Q Consensus 161 P~C~~Cgg~lrP~Vv~FgE~~~~~~~~~a~~~~~~aDlllvvGTSl~V~pa~~lv~~~~~~~~~a~lv~IN~~p~~~h~~ 240 (494)
|+||.|||.+||+||+|||.+|...++.+.++++++|++||||||+.|+|+++++..+ .+++++|+||.+|+.....
T Consensus 137 p~C~~Cgg~lrP~vv~fge~~~~~~~~~~~~~~~~~DlllviGTSl~v~p~~~l~~~~---~~~~~~i~iN~~~~~~~~~ 213 (225)
T cd01411 137 PYHAKCGGVIRPDIVLYEEMLNESVIEEAIQAIEKADLLVIVGTSFVVYPFAGLIDYR---QAGANLIAINKEPTQLDSP 213 (225)
T ss_pred CCCCCCCCEeCCCEEEcCCCCCHHHHHHHHHHHhcCCEEEEECcCCeehhHHHHHHHH---hCCCeEEEECCCCCCCCcc
Confidence 9999999999999999999999999999999999999999999999999999999876 2699999999999998776
Q ss_pred cccc
Q psy11832 241 CSLV 244 (494)
Q Consensus 241 a~l~ 244 (494)
+.+.
T Consensus 214 ~~~~ 217 (225)
T cd01411 214 ATLV 217 (225)
T ss_pred hheh
Confidence 5543
No 12
>cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity.
Probab=100.00 E-value=6.3e-48 Score=375.85 Aligned_cols=198 Identities=30% Similarity=0.477 Sum_probs=174.7
Q ss_pred CcccCCCCCccCCCCccccccccCCCCCcchhcchhHHhhChHHHHHHHHHHCCCCCCCChhHHHHHHHhhhhhhhhhhc
Q psy11832 1 MFGAAGIPDFRSPGSGLYDNLEKYKLPHPMAIFELDYFKHRPEAFYTLAKELYPGSFKPTPCHYFLKLLHQKNLLLRHFT 80 (494)
Q Consensus 1 ~~~~SGIPdFRg~~~Glw~~~~~~~~~~~~~~~~~~~f~~~P~~f~~~~~~~~~~~~~Pn~~h~~l~~l~~~~~~~~~~~ 80 (494)
|+|+||||||||+ +|+|+++ .+++++++.+|.++|+.+|+|+..+..
T Consensus 11 iS~~sGIp~fR~~-~g~~~~~------~~~~~~~~~~f~~~p~~~w~f~~~~~~-------------------------- 57 (224)
T cd01412 11 ISAESGIPTFRDA-DGLWARF------DPEELATPEAFARDPELVWEFYNWRRR-------------------------- 57 (224)
T ss_pred cchhhCCCCccCc-CCCcCCC------ChhhcCCHHHHHHCHHHHHHHHHHHHH--------------------------
Confidence 7999999999999 5999875 368899999999999999998865421
Q ss_pred ccccCCCCCChhHHHHHHHHhcCCccEEEeccccchHHhcCCCCCCEEEecCCcCccccCCCCcccchHHHHHHHhhcCC
Q psy11832 81 QVYWGSFKPTPCHYFLKLLHQKNLLLRHFTQNIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDYSVAWMKERIFAEVI 160 (494)
Q Consensus 81 ~~~~~~~~Pn~~H~~La~L~~~~~~~~iiTQNIDgLh~kAG~~~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~i~~~~~ 160 (494)
.+..++||.+|++|++|++++++++||||||||||++||+ ++|+|+||++..++|..|++.+..+. .+....+
T Consensus 58 --~~~~~~Pn~~H~~L~~L~~~~~~~~viTqNiDgL~~~aG~--~~v~e~HG~~~~~~C~~C~~~~~~~~---~~~~~~~ 130 (224)
T cd01412 58 --KALRAQPNPAHLALAELERRLPNVLLITQNVDGLHERAGS--RNVIELHGSLFRVRCSSCGYVGENNE---EIPEEEL 130 (224)
T ss_pred --HccccCCCHHHHHHHHHHhcCCCeEEEEccchHhhHHhCC--CceEeeCCCcCccccCCCCCCCCcch---hhhccCC
Confidence 1246789999999999999888999999999999999997 89999999999999999999876542 2334568
Q ss_pred CCCCCCCCeeeeeEEecCCCCChHHHHHHHhHcCCCCeEEEeCcCCChhhhhhhhhhhhhcCCCceEEEEeccccccccc
Q psy11832 161 PTCEKCNGLVKPDIVFFGENLPSRYFHRVDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPKADLLLIMGTSLVVQPF 240 (494)
Q Consensus 161 P~C~~Cgg~lrP~Vv~FgE~~~~~~~~~a~~~~~~aDlllvvGTSl~V~pa~~lv~~~~~~~~~a~lv~IN~~p~~~h~~ 240 (494)
|+||.|||.+||+||+|||.+|. .++.+.++++++|++||||||+.|.|+.++++.+ ..+++++|+||.+|+.....
T Consensus 131 p~C~~Cgg~lrp~Vv~fge~~p~-~~~~~~~~~~~~dl~lvlGTsl~v~p~~~l~~~~--~~~~~~~i~iN~~~~~~~~~ 207 (224)
T cd01412 131 PRCPKCGGLLRPGVVWFGESLPL-ALLEAVEALAKADLFLVIGTSGVVYPAAGLPEEA--KERGARVIEINPEPTPLSPI 207 (224)
T ss_pred CCCCCCCCccCCceEECCCCCHH-HHHHHHHHHHcCCEEEEECcCccchhHHHHHHHH--HHCCCeEEEECCCCCCCCCc
Confidence 99999999999999999999999 8899999999999999999999999999999876 46899999999999987643
Q ss_pred c
Q psy11832 241 C 241 (494)
Q Consensus 241 a 241 (494)
+
T Consensus 208 ~ 208 (224)
T cd01412 208 A 208 (224)
T ss_pred C
Confidence 3
No 13
>PTZ00408 NAD-dependent deacetylase; Provisional
Probab=100.00 E-value=1.3e-47 Score=376.69 Aligned_cols=198 Identities=25% Similarity=0.351 Sum_probs=166.7
Q ss_pred CcccCCCCCccCCCCccccccccCCCCCcchhcchhHHhhChHHHHHHHHHHCCCCCCCChhHHHHHHHhhhhhhhhhhc
Q psy11832 1 MFGAAGIPDFRSPGSGLYDNLEKYKLPHPMAIFELDYFKHRPEAFYTLAKELYPGSFKPTPCHYFLKLLHQKNLLLRHFT 80 (494)
Q Consensus 1 ~~~~SGIPdFRg~~~Glw~~~~~~~~~~~~~~~~~~~f~~~P~~f~~~~~~~~~~~~~Pn~~h~~l~~l~~~~~~~~~~~ 80 (494)
|||+||||||||+ +|+|+++ ++++++++.+|.+||+.+|+|+..+..
T Consensus 15 iS~~SGIPdFR~~-~Glw~~~------~~~~~~~~~~f~~~p~~~~~f~~~~~~-------------------------- 61 (242)
T PTZ00408 15 ISAESGISTFRDG-NGLWENH------RVEDVATPDAFLRNPALVQRFYNERRR-------------------------- 61 (242)
T ss_pred hhhhhCCCcccCC-CCCCCCC------ChhhcCCHHHHHhCHHHHHHHHHHHHH--------------------------
Confidence 7899999999999 6999864 478889999999999999998754310
Q ss_pred ccccCCCCCChhHHHHHHHHhc--CCccEEEeccccchHHhcCCCCCCEEEecCCcCccccCCCCcccchHHHHHHHhhc
Q psy11832 81 QVYWGSFKPTPCHYFLKLLHQK--NLLLRHFTQNIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDYSVAWMKERIFAE 158 (494)
Q Consensus 81 ~~~~~~~~Pn~~H~~La~L~~~--~~~~~iiTQNIDgLh~kAG~~~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~i~~~ 158 (494)
.....+++||.+|++|++|++. ++.++||||||||||++||. ++|+|+||++++++|+.|++.|+.+... ..
T Consensus 62 ~~~~~~~~Pn~~H~~L~~Le~~~~~~~~~iiTQNiDgLh~~AG~--~~v~elHG~~~~~~C~~C~~~~~~~~~~----~~ 135 (242)
T PTZ00408 62 ALLSSSVKPNKAHFALAKLEREYRGGKVVVVTQNVDNLHERAGS--THVLHMHGELLKVRCTATGHVFDWTEDV----VH 135 (242)
T ss_pred HhccCCCCCCHHHHHHHHHHHhhcCCcEEEEeecccchhhHcCC--CcEEEecCccceEEECCCCcccCchhhh----hc
Confidence 0012467899999999999875 78899999999999999995 7899999999999999999988754322 12
Q ss_pred CCCCCCCCC--CeeeeeEEecCC-CCChHHHHHHHhHcCCCCeEEEeCcCCChhhhhhhhhhhhhcCCCceEEEEecccc
Q psy11832 159 VIPTCEKCN--GLVKPDIVFFGE-NLPSRYFHRVDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPKADLLLIMGTSL 235 (494)
Q Consensus 159 ~~P~C~~Cg--g~lrP~Vv~FgE-~~~~~~~~~a~~~~~~aDlllvvGTSl~V~pa~~lv~~~~~~~~~a~lv~IN~~p~ 235 (494)
.+|+||.|| |.+||+|||||| .+|...++ +++.+||++||||||++|+|+++|+..+ ...++++|+||.+|+
T Consensus 136 ~~p~C~~Cg~~g~lrP~vV~FGE~~~~~~~~~---~~~~~~DlllviGTSl~V~pa~~l~~~a--~~~g~~vi~IN~~~~ 210 (242)
T PTZ00408 136 GSSRCKCCGCVGTLRPHIVWFGEMPLYMDEIE---SVMSKTDLFVAVGTSGNVYPAAGFVGRA--QFYGATTLELNLEEG 210 (242)
T ss_pred CCCccccCCCCCCCCCCEEEcCCCCCcHHHHH---HHHHhCCEEEEEccCCccccHHHHHHHH--HHcCCeEEEECCCCC
Confidence 479999998 999999999999 77765554 4478899999999999999999999988 567999999999998
Q ss_pred ccccccc
Q psy11832 236 VVQPFCS 242 (494)
Q Consensus 236 ~~h~~a~ 242 (494)
.....+.
T Consensus 211 ~~~~~~~ 217 (242)
T PTZ00408 211 TNYSQFD 217 (242)
T ss_pred CCCccCC
Confidence 7765443
No 14
>PRK00481 NAD-dependent deacetylase; Provisional
Probab=100.00 E-value=4.1e-47 Score=374.30 Aligned_cols=199 Identities=31% Similarity=0.499 Sum_probs=176.0
Q ss_pred CcccCCCCCccCCCCccccccccCCCCCcchhcchhHHhhChHHHHHHHHHHCCCCCCCChhHHHHHHHhhhhhhhhhhc
Q psy11832 1 MFGAAGIPDFRSPGSGLYDNLEKYKLPHPMAIFELDYFKHRPEAFYTLAKELYPGSFKPTPCHYFLKLLHQKNLLLRHFT 80 (494)
Q Consensus 1 ~~~~SGIPdFRg~~~Glw~~~~~~~~~~~~~~~~~~~f~~~P~~f~~~~~~~~~~~~~Pn~~h~~l~~l~~~~~~~~~~~ 80 (494)
|||+||||||||. +|+|+++ ++++++++++|.++|+.||.|++.+..
T Consensus 24 iS~~sGip~FR~~-~gl~~~~------~~~~~~~~~~~~~~p~~~w~f~~~~~~-------------------------- 70 (242)
T PRK00481 24 ISAESGIPDFRSA-NGLWEEH------RPEDVASPEGFARDPELVWKFYNERRR-------------------------- 70 (242)
T ss_pred cccccCCCCccCC-CcCccCC------CHHHhccHHHHhhCHHHHHHHHHHHHH--------------------------
Confidence 7999999999998 6999863 478999999999999999998865421
Q ss_pred ccccCCCCCChhHHHHHHHHhcCCccEEEeccccchHHhcCCCCCCEEEecCCcCccccCCCCcccchHHHHHHHhhcCC
Q psy11832 81 QVYWGSFKPTPCHYFLKLLHQKNLLLRHFTQNIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDYSVAWMKERIFAEVI 160 (494)
Q Consensus 81 ~~~~~~~~Pn~~H~~La~L~~~~~~~~iiTQNIDgLh~kAG~~~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~i~~~~~ 160 (494)
.+.+++||++|++|++|+++|++++||||||||||++||. ++|+|+||+++.++|++|++.|+.+... ...+
T Consensus 71 --~~~~~~Pn~~H~~L~~L~~~~~~~~viTqNiD~L~~~aG~--~~v~elHG~~~~~~C~~C~~~~~~~~~~----~~~~ 142 (242)
T PRK00481 71 --QLLDAKPNAAHRALAELEKLGKLVTVITQNIDGLHERAGS--KNVIELHGSLLRARCTKCGQTYDLDEYL----KPEP 142 (242)
T ss_pred --HhccCCCCHHHHHHHHHHhcCCCeEEEEeccchhHHHcCC--CceeeccCCcCceeeCCCCCCcChhhhc----cCCC
Confidence 0126789999999999998899999999999999999995 7999999999999999999988765443 2358
Q ss_pred CCCCCCCCeeeeeEEecCCCCChHHHHHHHhHcCCCCeEEEeCcCCChhhhhhhhhhhhhcCCCceEEEEeccccccccc
Q psy11832 161 PTCEKCNGLVKPDIVFFGENLPSRYFHRVDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPKADLLLIMGTSLVVQPF 240 (494)
Q Consensus 161 P~C~~Cgg~lrP~Vv~FgE~~~~~~~~~a~~~~~~aDlllvvGTSl~V~pa~~lv~~~~~~~~~a~lv~IN~~p~~~h~~ 240 (494)
|+||.|||.+||+||+|||.+|+..+..+.++++++|++||||||++|+|+.++++.+ ..+++++|+||.+|+.....
T Consensus 143 p~C~~Cgg~lrP~Vv~fge~~~~~~~~~a~~~~~~~dl~lviGTsl~V~p~~~l~~~~--~~~~~~~i~iN~~~~~~~~~ 220 (242)
T PRK00481 143 PRCPKCGGILRPDVVLFGEMLPELAIDEAYEALEEADLFIVIGTSLVVYPAAGLPYEA--REHGAKTVEINLEPTPLDSL 220 (242)
T ss_pred CCCCCCCCccCCCeEECCCCCCHHHHHHHHHHHhcCCEEEEECCCceEcCHhHHHHHH--HHCCCeEEEECCCCCCCCCc
Confidence 9999999999999999999999998999999999999999999999999999999866 46899999999999986554
Q ss_pred cc
Q psy11832 241 CS 242 (494)
Q Consensus 241 a~ 242 (494)
+.
T Consensus 221 ~~ 222 (242)
T PRK00481 221 FD 222 (242)
T ss_pred cC
Confidence 43
No 15
>PF02146 SIR2: Sir2 family; InterPro: IPR003000 These sequences represent the Sirtuin (Sir2-related) family of NAD+-dependent deacetylases. This family of enzymes is broadly conserved from bacteria to humans. In yeast, Sir2 proteins form complexes with other proteins to silence chromatin by accessing histones and deacetylating them. Sir2 proteins have been proposed to play a role in silencing, chromosome stability and ageing []. The bacterial enzyme CobB, an homologue of Sir2, is a phosphoribosyltransferase []. An in vitro ADP ribosyltransferase activity has also been associated with human members of this family []. Sir2-like enzymes employ NAD+ as a cosubstrate in deacetylation reactions [] and catalyse a reaction in which the cleavage of NAD(+)and histone and/or protein deacetylation are coupled to the formation of O-acetyl-ADP-ribose, a novel metabolite. The dependence of the reaction on both NAD(+) and the generation of this potential second messenger offers new clues to understanding the function and regulation of nuclear, cytoplasmic and mitochondrial Sir2-like enzymes []. Silent Information Regulator protein of Saccharomyces cerevisiae (Sir2) is one of several factors critical for silencing at least three loci. Among them, it is unique because it silences the rDNA as well as the mating type loci and telomeres []. Sir2 interacts in a complex with itself and with Sir3 and Sir4, two proteins that are able to interact with nucleosomes. In addition Sir2 also interacts with ubiquitination factors and/or complexes []. Homologues of Sir2 share a core domain including the GAG and NID motifs and a putative C4 Zinc finger. The regions containing these three conserved motifs are individually essential for Sir2 silencing function, as are the four cysteins []. In addition, the conserved residues HG next to the putative Zn finger have been shown to be essential for the ADP ribosyltransferase activity []. ; GO: 0008270 zinc ion binding, 0070403 NAD+ binding, 0006476 protein deacetylation; PDB: 1S5P_A 3PKI_E 3PKJ_F 3K35_A 1ICI_A 1M2K_A 1M2G_A 1M2N_B 1M2H_A 1M2J_A ....
Probab=100.00 E-value=4.9e-47 Score=357.06 Aligned_cols=173 Identities=40% Similarity=0.659 Sum_probs=141.6
Q ss_pred CcccCCCCCccC-CCCccccccccCCCCCcchhcchhHHhhChHHHHH-HHHHHCCCCCCCChhHHHHHHHhhhhhhhhh
Q psy11832 1 MFGAAGIPDFRS-PGSGLYDNLEKYKLPHPMAIFELDYFKHRPEAFYT-LAKELYPGSFKPTPCHYFLKLLHQKNLLLRH 78 (494)
Q Consensus 1 ~~~~SGIPdFRg-~~~Glw~~~~~~~~~~~~~~~~~~~f~~~P~~f~~-~~~~~~~~~~~Pn~~h~~l~~l~~~~~~~~~ 78 (494)
|||+|||||||| + +|+|+++. +..+.++.+|.++|..+|+ |++.+.
T Consensus 4 iS~~SGIpdfR~~~-~Glw~~~~------~~~l~~~~~~~~~~~~~~~~f~~~~~------------------------- 51 (178)
T PF02146_consen 4 ISTASGIPDFRSDP-DGLWTKYK------PEELATPEAFFSDPEFVWEKFYRFRR------------------------- 51 (178)
T ss_dssp GGGGGT--SSSSTT-SCHHHHCH------HHHHSSHHHHHHHHHHHHHHHHHHHH-------------------------
T ss_pred cchhhCCCccccCC-CCcceeee------ccccccccccccccchhhhHHHHHhh-------------------------
Confidence 789999999999 7 79999864 4557788899999998777 543321
Q ss_pred hcccccCCCCCChhHHHHHHHHhcCCccEEEeccccchHHhcCCCCCCEEEecCCcCccccCCCCcccchHHHHHHHhhc
Q psy11832 79 FTQVYWGSFKPTPCHYFLKLLHQKNLLLRHFTQNIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDYSVAWMKERIFAE 158 (494)
Q Consensus 79 ~~~~~~~~~~Pn~~H~~La~L~~~~~~~~iiTQNIDgLh~kAG~~~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~i~~~ 158 (494)
......++||.+|++|++|+++++.++||||||||||++||++ +|+|+|||++.++|+.|++.++.+.....+...
T Consensus 52 --~~~~~~a~Pn~~H~~La~L~~~g~~~~viTQNIDgLh~~AG~~--~vielHG~l~~~~C~~C~~~~~~~~~~~~~~~~ 127 (178)
T PF02146_consen 52 --KVISKDAEPNPGHRALAELEKKGKLKRVITQNIDGLHQKAGSP--KVIELHGSLFRLRCSKCGKEYDREDIVDSIDEE 127 (178)
T ss_dssp --HHCTCTS---HHHHHHHHHHHTTSEEEEEES-SSSHHHHTTES--CEEETTEEEEEEEETTTSBEEEGHHHHHHHHTT
T ss_pred --hhccccCCCChhHHHHHHHHHhhhhccceecccchhhhcccch--hhHHHHhhhceeeecCCCccccchhhccccccc
Confidence 0111278899999999999999999999999999999999985 999999999999999999999888777777778
Q ss_pred CCCCCCCCCCeeeeeEEecCCCCChHHHHHHHhHcCCCCeEEEeCcCCChhh
Q psy11832 159 VIPTCEKCNGLVKPDIVFFGENLPSRYFHRVDVDFPKADLLLIMGTSLVVQP 210 (494)
Q Consensus 159 ~~P~C~~Cgg~lrP~Vv~FgE~~~~~~~~~a~~~~~~aDlllvvGTSl~V~p 210 (494)
..|+||.||+.|||+||+|||.+| ..+..+.+++++||++|||||||+|+|
T Consensus 128 ~~~~C~~C~~~lrp~vv~fgE~~~-~~~~~~~~~~~~~Dl~lviGTSl~V~P 178 (178)
T PF02146_consen 128 EPPRCPKCGGLLRPDVVLFGESLP-EEIEEAIEDAEEADLLLVIGTSLQVYP 178 (178)
T ss_dssp SSCBCTTTSCBEEEEE--BTSB-S-HHHHHHHHHHHH-SEEEEESS-STSTT
T ss_pred ccccccccCccCCCCeeecCCCCH-HHHHHHHHHHHcCCEEEEEccCcEEEC
Confidence 899999999999999999999999 778899999999999999999999998
No 16
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=100.00 E-value=1.3e-45 Score=371.46 Aligned_cols=204 Identities=25% Similarity=0.408 Sum_probs=167.3
Q ss_pred CcccCCCCCccCCCCccccccccCCCCCcchhcchhHHhhChHHHHHHHHHHCCCCCCCChhHHHHHHHhhhhhhhhhhc
Q psy11832 1 MFGAAGIPDFRSPGSGLYDNLEKYKLPHPMAIFELDYFKHRPEAFYTLAKELYPGSFKPTPCHYFLKLLHQKNLLLRHFT 80 (494)
Q Consensus 1 ~~~~SGIPdFRg~~~Glw~~~~~~~~~~~~~~~~~~~f~~~P~~f~~~~~~~~~~~~~Pn~~h~~l~~l~~~~~~~~~~~ 80 (494)
|||+||||||||+ +|+|++.. ++ +...|..+|...|.|++..+. .
T Consensus 30 iS~~SGIPdFR~~-~G~w~~~~------~~---~~~~~~~~~~~~~~~~~~~~~-------------------------~ 74 (285)
T PRK05333 30 ISTDSGIPDYRDR-NGQWKRSP------PI---TYQAFMGSDAARRRYWARSMV-------------------------G 74 (285)
T ss_pred cccccCCCcccCC-CCccccCC------cc---cHHHHhcCchhhHHHHHHHHh-------------------------h
Confidence 7999999999999 69998742 32 345677777654444432210 0
Q ss_pred ccccCCCCCChhHHHHHHHHhcCCccEEEeccccchHHhcCCCCCCEEEecCCcCccccCCCCcccchHHHHHHHh----
Q psy11832 81 QVYWGSFKPTPCHYFLKLLHQKNLLLRHFTQNIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDYSVAWMKERIF---- 156 (494)
Q Consensus 81 ~~~~~~~~Pn~~H~~La~L~~~~~~~~iiTQNIDgLh~kAG~~~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~i~---- 156 (494)
+..+..++||++|++|++|+++|++++||||||||||+||| .++|+|+||++..++|++|++.++.++....+.
T Consensus 75 ~~~~~~~~Pn~~H~aLa~L~~~g~~~~viTQNIDgLh~rAG--~~~ViElHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~ 152 (285)
T PRK05333 75 WPVFGRAQPNAAHHALARLGAAGRIERLVTQNVDGLHQRAG--SRDVIELHGRLDGVRCMGCGARHPRAEIQHVLEAANP 152 (285)
T ss_pred chhcccCCCCHHHHHHHHHHHcCCcccEEecccchhHHHcC--CCCEEeecCCcCEEEECCCCCcCCHHHHHHHHhhcCc
Confidence 01134689999999999999999999999999999999999 479999999999999999999887665433221
Q ss_pred -----------------------hcCCCCCCCCCCeeeeeEEecCCCCChHHHHHHHhHcCCCCeEEEeCcCCChhhhhh
Q psy11832 157 -----------------------AEVIPTCEKCNGLVKPDIVFFGENLPSRYFHRVDVDFPKADLLLIMGTSLVVQPFCS 213 (494)
Q Consensus 157 -----------------------~~~~P~C~~Cgg~lrP~Vv~FgE~~~~~~~~~a~~~~~~aDlllvvGTSl~V~pa~~ 213 (494)
...+|+||.|||.|||+||+|||.+|+..+..+.++++++|++||||||+.|+|++.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~iP~C~~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~~DlllvvGTSl~V~p~~~ 232 (285)
T PRK05333 153 EWLALEAAPAPDGDADLEWAAFDHFRVPACPACGGILKPDVVFFGENVPRERVAAARAALDAADAVLVVGSSLMVYSGYR 232 (285)
T ss_pred chhhhhcccCCCccccccccccccCCCCCCCCCCCcccCCEEEcCCCCCHHHHHHHHHHHhcCCEEEEECcCceecchhh
Confidence 124799999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhcCCCceEEEEecccccccccccc
Q psy11832 214 LVDKVDVDFPKADLLLIMGTSLVVQPFCSL 243 (494)
Q Consensus 214 lv~~~~~~~~~a~lv~IN~~p~~~h~~a~l 243 (494)
|++.+ ...++++|+||.+|+.....+.+
T Consensus 233 ~~~~a--~~~g~~~i~IN~~~t~~~~~~~~ 260 (285)
T PRK05333 233 FCVWA--AQQGKPIAALNLGRTRADPLLTL 260 (285)
T ss_pred hHHHH--HHCCCeEEEECCCCCCCCcceeE
Confidence 99887 45577999999999987765533
No 17
>cd00296 SIR2 SIR2 superfamily of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer. Also included in this superfamily is a group of uncharacterized Sir2-like proteins which lack certain key catalytic
Probab=100.00 E-value=3.2e-43 Score=341.58 Aligned_cols=200 Identities=37% Similarity=0.609 Sum_probs=176.2
Q ss_pred CcccCCCCCccCCCCccccccccCCCCCcchhcchhHHhhChHHHHHHHHHHCCCCCCCChhHHHHHHHhhhhhhhhhhc
Q psy11832 1 MFGAAGIPDFRSPGSGLYDNLEKYKLPHPMAIFELDYFKHRPEAFYTLAKELYPGSFKPTPCHYFLKLLHQKNLLLRHFT 80 (494)
Q Consensus 1 ~~~~SGIPdFRg~~~Glw~~~~~~~~~~~~~~~~~~~f~~~P~~f~~~~~~~~~~~~~Pn~~h~~l~~l~~~~~~~~~~~ 80 (494)
+|++||||||||.++|+|+++...... ++.++|..+|+.||.|++++..
T Consensus 11 iS~~sGiP~fr~~~~g~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-------------------------- 59 (222)
T cd00296 11 ISTESGIPDFRGLGTGLWTRLDPEELA-----FSPEAFRRDPELFWLFYKERRY-------------------------- 59 (222)
T ss_pred cccccCCCCccccccchhhcCCccccc-----CCHHHHHHCHHHHHHHHHHHHh--------------------------
Confidence 689999999999944999986533221 5889999999999999887531
Q ss_pred ccccCCCCCChhHHHHHHHHhcCCccEEEeccccchHHhcCCCCCCEEEecCCcCccccCCCCcccchHHHHHHHhhcCC
Q psy11832 81 QVYWGSFKPTPCHYFLKLLHQKNLLLRHFTQNIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDYSVAWMKERIFAEVI 160 (494)
Q Consensus 81 ~~~~~~~~Pn~~H~~La~L~~~~~~~~iiTQNIDgLh~kAG~~~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~i~~~~~ 160 (494)
.+.+++||++|++|++|+++++.++|||||||+||++||++.++|+|+||++...+|..|++.++.++.... ..+
T Consensus 60 --~~~~~~P~~~H~~l~~l~~~~~~~~iiTqNiD~L~~~ag~~~~~v~~lHG~~~~~~C~~C~~~~~~~~~~~~---~~~ 134 (222)
T cd00296 60 --TPLDAKPNPAHRALAELERKGKLKRIITQNVDGLHERAGSRRNRVIELHGSLDRVRCTSCGKEYPRDEVLER---EKP 134 (222)
T ss_pred --hhCcCCCCHHHHHHHHHHHcCCCceEEecChHHHHHHhCCCcCcEEEecCCCCccEECCCCCCcchhhhhhc---cCC
Confidence 134678999999999999999999999999999999999988899999999999999999998876655432 569
Q ss_pred CCCCCCCCeeeeeEEecCCCCChHHHHHHHhHcCCCCeEEEeCcCCChhhhhhhhhhhhhcCCCceEEEEeccccccc
Q psy11832 161 PTCEKCNGLVKPDIVFFGENLPSRYFHRVDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPKADLLLIMGTSLVVQ 238 (494)
Q Consensus 161 P~C~~Cgg~lrP~Vv~FgE~~~~~~~~~a~~~~~~aDlllvvGTSl~V~pa~~lv~~~~~~~~~a~lv~IN~~p~~~h 238 (494)
|+||.|||.+||+|++|||.+|+..+..+.+++.++|++|+||||+.|+|+.++++.+ ...++++++||.+|+...
T Consensus 135 p~C~~C~~~l~p~v~~fge~~~~~~~~~~~~~~~~~d~llviGtSl~v~~~~~l~~~~--~~~~~~~~~in~~~~~~~ 210 (222)
T cd00296 135 PRCPKCGGLLRPDVVDFGEALPKEWFDRALEALLEADLVLVIGTSLTVYPAARLLLRA--PERGAPVVIINREPTPAD 210 (222)
T ss_pred CCCCCCCCcccCceEECCCCCCHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHH--HHCCCcEEEECCCCCCCC
Confidence 9999999999999999999999988899999999999999999999999999999998 357899999999999875
No 18
>KOG2684|consensus
Probab=100.00 E-value=1.2e-43 Score=359.53 Aligned_cols=202 Identities=44% Similarity=0.810 Sum_probs=183.5
Q ss_pred cccCCCCCccCCCCccccccccCCCCCcchhcchhHHhhChHHHHHHHHHHCCCCCCCChhHHHHHHHhhhhhhhhhhcc
Q psy11832 2 FGAAGIPDFRSPGSGLYDNLEKYKLPHPMAIFELDYFKHRPEAFYTLAKELYPGSFKPTPCHYFLKLLHQKNLLLRHFTQ 81 (494)
Q Consensus 2 ~~~SGIPdFRg~~~Glw~~~~~~~~~~~~~~~~~~~f~~~P~~f~~~~~~~~~~~~~Pn~~h~~l~~l~~~~~~~~~~~~ 81 (494)
+|+||||||||. +|+|..+++.++++|.++|++++|+.+|..||+|.+.+++..+.
T Consensus 100 Svs~GIPDFRSs-~G~ys~l~~~~l~sp~~mFd~~~fr~d~~~F~~~a~~l~~~~~~----------------------- 155 (412)
T KOG2684|consen 100 SVSAGIPDFRSS-EGIYSKLKAPDLPSPQAMFDISYFRDDPSIFYRFARELKPPSNN----------------------- 155 (412)
T ss_pred eeecCCCCcccc-ccHHHHhhcccCCCHHHhccchhhhcccHHHHHHHHHhcCCccC-----------------------
Confidence 689999999999 69999999999999999999999999999999999998875443
Q ss_pred cccCCCCCChhHHHHHHHHhcCCccEEEeccccchHHhcCCCCCCEEEecCCcCccccCCCCcccchHHHHHHHhhcCCC
Q psy11832 82 VYWGSFKPTPCHYFLKLLHQKNLLLRHFTQNIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDYSVAWMKERIFAEVIP 161 (494)
Q Consensus 82 ~~~~~~~Pn~~H~~La~L~~~~~~~~iiTQNIDgLh~kAG~~~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~i~~~~~P 161 (494)
|++.|.+|+.|+++|++.++||||||+|+++||...++++++|||+.+..|.+|+..++.+.+.+.+....+|
T Consensus 156 -------ps~~H~Fi~~L~~~gkLlR~YTQNID~LE~~aGl~~~~lVq~HGSf~t~sCt~C~~k~~~~~~~~~~~~~~vp 228 (412)
T KOG2684|consen 156 -------PSAFHEFIKLLEKKGKLLRNYTQNIDGLERKAGLSTNKLVQCHGSFKTASCTKCGYKKPFEELREDIRNQEVP 228 (412)
T ss_pred -------CchHHHHHHHHHhcCceeEEeecccchhhhccCCCcCceEEeccccceeeecccccccChHHHHHHHhcCcCc
Confidence 5555666666999999999999999999999999888899999999999999999999999888888889999
Q ss_pred CCCCCCC------------------eeeeeEEecCCCCChHHHHHHHhHcCCCCeEEEeCcCCChhhhhhhhhhhhhcCC
Q psy11832 162 TCEKCNG------------------LVKPDIVFFGENLPSRYFHRVDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFP 223 (494)
Q Consensus 162 ~C~~Cgg------------------~lrP~Vv~FgE~~~~~~~~~a~~~~~~aDlllvvGTSl~V~pa~~lv~~~~~~~~ 223 (494)
.||.|.+ .|||+||||||.+|+.++.........+|++|||||||.|+|++.+++.++ +
T Consensus 229 ~CP~C~~~~~~r~~~g~r~~~~~vgvlrP~IvffgE~lP~~~~~~~~~d~d~~DllIviGTSLKV~pV~~iv~~~~---~ 305 (412)
T KOG2684|consen 229 VCPDCEGKNEKRRGAGKRCESEGVGVLRPDIVFFGENLPDSFHIGVGADLDECDLLIVIGTSLKVRPVAEIVKSFP---A 305 (412)
T ss_pred cCcccccccccccCccccccccCccccccceEEecCCCChHHHhhhhccccccceEEEeCCccccccHHHHHhhhc---c
Confidence 9999975 899999999999999999888888888999999999999999999999994 4
Q ss_pred CceEEEEecccccc
Q psy11832 224 KADLLLIMGTSLVV 237 (494)
Q Consensus 224 ~a~lv~IN~~p~~~ 237 (494)
+...|.||.+|...
T Consensus 306 ~vpqIliNr~~v~h 319 (412)
T KOG2684|consen 306 KVPQILINRDPVPH 319 (412)
T ss_pred cCcEEEecCccccc
Confidence 55789999886663
No 19
>PTZ00410 NAD-dependent SIR2; Provisional
Probab=100.00 E-value=2.5e-40 Score=337.11 Aligned_cols=218 Identities=27% Similarity=0.370 Sum_probs=154.0
Q ss_pred ecccccccccc-cccccccccCCCCcchhhhhHhhCCCCCceeeccCccceeecCCCCCccchHHHHhhhccCCCCCCcc
Q psy11832 231 MGTSLVVQPFC-SLVDKTNIRGSDSDNIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDYSVAWMKEGNLLGRMGITLG 309 (494)
Q Consensus 231 N~~p~~~h~~a-~l~~~~~l~~v~TQNID~Le~~AG~~~~~vvE~HGs~~~~~C~~C~~~y~~~~~~~~i~~~~~~~p~c 309 (494)
..+|+..|... .|+++|++.++|||||||||++||+++++|||+|||+++.+|++|++.|+.+.+...+... .+|.|
T Consensus 97 ~a~Pn~aH~aLa~Le~~G~l~~vITQNIDgLh~rAG~~~~~ViElHGsl~~~~C~~C~~~~~~~~~~~~~~~~--~vP~C 174 (349)
T PTZ00410 97 HFQPTAVHHFIRLLADEGRLLRCCTQNIDGLERAAGVPPSLLVEAHGSFSAASCIECHTPYDIEQAYLEARSG--KVPHC 174 (349)
T ss_pred cCCCCHHHHHHHHHHhcCCcceEEecchhhhHhhcCCCcccEEEeccCCCeeEeCCCCCCcchhHHHHHhhcC--CCCCC
Confidence 35788888875 6888999999999999999999999999999999999999999999999988765544333 35889
Q ss_pred CCCCCCCCCCCCcEEe--ccCChhHHHhhhcCCCCCCeEEEeccccccCCCCcchhhhcccCCCCCCCCCCcccEEE-eC
Q psy11832 310 LHAGGLSSIPGGAEVF--SALCLEFGVHSASAPPHCPRLLINKEKVGVGSRNPLMGLLGLSEGLGFDNENNVRDVFL-EG 386 (494)
Q Consensus 310 ~~C~g~~~i~~p~ivf--e~l~~~~~~~~~~~~~~~Dlliv~GTSl~V~~~~P~a~l~~~~~g~~~~~~~~~~dl~i-~g 386 (494)
+.|+| ++||+||| |.+|..+.. +.+.+++||+||||||||+| +|++.++..+. ....-++| .+
T Consensus 175 ~~CgG---~lRPdVVlFGE~lp~~~~~-a~~~~~~aDllLVIGTSL~V---~Paa~l~~~a~-------~~~pvviIN~e 240 (349)
T PTZ00410 175 STCGG---IVKPDVVFFGENLPDAFFN-VHHDIPEAELLLIIGTSLQV---HPFALLACVVP-------KDVPRVLFNLE 240 (349)
T ss_pred CCCCC---ccCCcEEecCCcCCHHHHH-HHHHHHhCCEEEEECcCCcc---cCHHHHHHHHh-------cCCCEEEECcc
Confidence 99998 58888887 677877777 88888999999999999999 99998875431 11112222 23
Q ss_pred ChhHHHHHHHHHhCCCchHH----HhhcCccccCCCCCCCccceEEeCCcHHHHHHHHHHcCCchhhhhhhcccCCC---
Q psy11832 387 DCDSGCQKLADMLGWGIPLM----GLLGLSEGLGFDNENNVRDVFLEGDCDSGCQKLADMLGWGIPLMGLLGLSEGL--- 459 (494)
Q Consensus 387 ~~~~~~~~L~~~lg~~~~~~----~l~~~~~~~~f~~~~~~~Dv~~lgdcD~~~~~l~~~lgW~~el~~l~~~~~~~--- 459 (494)
.++...-+++ .+++. .++.+..+..+.+.-+..| .....-++|+
T Consensus 241 ~~~~~~~r~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~g~~~~ 291 (349)
T PTZ00410 241 RVGGLMFRFP-----TDPLTTFHADSVAKEGRSSSSSSRSSSD------------------------SSTSSSSDGYGQF 291 (349)
T ss_pred ccCCceeecc-----CCccccchhhhhhhcccCcccccccccc------------------------ccccccccccccc
Confidence 3322211111 01111 1111222222221111111 1122333444
Q ss_pred ---CCccccccccceeccccchhHHHHHHHhccCccc
Q psy11832 460 ---GFDNENNVRDVFLEGDCDSGCQKLADMLGWGKDI 493 (494)
Q Consensus 460 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (494)
+.|..+++|||||.||||.||.+||++|||++||
T Consensus 292 ~~~~~~~~~~~~d~~~~g~~~~~~~~~~~~lg~~~~l 328 (349)
T PTZ00410 292 GDYEADPGGVCRDIFFPGDCQESVRRLAEALGLGEAL 328 (349)
T ss_pred cccccCccccccceeecccchHHHHHHHHHhCcHHHH
Confidence 3488899999999999999999999999999886
No 20
>KOG2683|consensus
Probab=100.00 E-value=8.2e-38 Score=295.19 Aligned_cols=206 Identities=27% Similarity=0.448 Sum_probs=169.6
Q ss_pred cccCCCCCccCCCCccccccccCCCCCcchhcchhHHhhChHH--HHHHHHHHCCCCCCCChhHHHHHHHhhhhhhhhhh
Q psy11832 2 FGAAGIPDFRSPGSGLYDNLEKYKLPHPMAIFELDYFKHRPEA--FYTLAKELYPGSFKPTPCHYFLKLLHQKNLLLRHF 79 (494)
Q Consensus 2 ~~~SGIPdFRg~~~Glw~~~~~~~~~~~~~~~~~~~f~~~P~~--f~~~~~~~~~~~~~Pn~~h~~l~~l~~~~~~~~~~ 79 (494)
+|+||||||||++-|+|++... .| +...+|.++++.. ||. |.+.
T Consensus 57 STEsGIPDYRS~~VGlYars~~----kP--I~hqdf~rSs~~RqRYWa--Rnf~-------------------------- 102 (305)
T KOG2683|consen 57 STESGIPDYRSEDVGLYARSAH----KP--IQHQDFVRSSRCRQRYWA--RNFV-------------------------- 102 (305)
T ss_pred cccCCCCcccCCCccceeecCC----Cc--chHHHHhhhhHHHHHHHH--Hhhc--------------------------
Confidence 7999999999996699985321 12 2233455555543 444 2222
Q ss_pred cccccCCCCCChhHHHHHHHHhcCCccEEEeccccchHHhcCCCCCCEEEecCCcCccccCCCCcccchHHHHHHH----
Q psy11832 80 TQVYWGSFKPTPCHYFLKLLHQKNLLLRHFTQNIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDYSVAWMKERI---- 155 (494)
Q Consensus 80 ~~~~~~~~~Pn~~H~~La~L~~~~~~~~iiTQNIDgLh~kAG~~~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~i---- 155 (494)
.|.-+..++||++|.||++|++.++.+++||||||+||.|||+ +.|.|+||+.....|..|+...+...+.+++
T Consensus 103 gWprFs~aqPn~~H~ALs~wE~~~r~~wliTQNVD~LH~kAGS--~~~tElHG~~~~VkCl~C~y~~~R~~~Qdrl~~~N 180 (305)
T KOG2683|consen 103 GWPRFSAAQPNPAHYALSKWEKAGRFQWLITQNVDRLHTKAGS--RMVTELHGSAYQVKCLSCGYIEPRQTFQDRLKYLN 180 (305)
T ss_pred CcchhhhcCCCchhHHHHHHhhcCceEEEeeccchhhhhhccc--cceeeeccceEEEEecccCcccchHHHHHHHHhcC
Confidence 2333577899999999999999999999999999999999994 7899999999999999999988765544322
Q ss_pred --------------------------hhcCCCCCCCCCCeeeeeEEecCCCCChHHHHHHHhHcCCCCeEEEeCcCCChh
Q psy11832 156 --------------------------FAEVIPTCEKCNGLVKPDIVFFGENLPSRYFHRVDVDFPKADLLLIMGTSLVVQ 209 (494)
Q Consensus 156 --------------------------~~~~~P~C~~Cgg~lrP~Vv~FgE~~~~~~~~~a~~~~~~aDlllvvGTSl~V~ 209 (494)
....+|.|++|||.|||+|+||||+++.+..+.+.+.+.+||-+||+||||.|+
T Consensus 181 P~fke~~~~~~~~~pDgDv~lpl~~e~gF~IPeC~~CgG~lKpdV~fFGdnvn~dkv~~~~~~v~e~dg~LvlGsSL~v~ 260 (305)
T KOG2683|consen 181 PGFKEAIVSPGHQRPDGDVELPLEFEEGFQIPECEKCGGLLKPDVTFFGDNVNKDKVTFCMEKVKECDGFLVLGSSLMVL 260 (305)
T ss_pred cchhhhccCccccCCCCCeecchhhhhcccCCcccccCCccCCceEEecCCCChHHHHHHHHHHhccCceEEechhHHHH
Confidence 012589999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhcCCCceEEEEecccccccccccccc
Q psy11832 210 PFCSLVDKVDVDFPKADLLLIMGTSLVVQPFCSLVD 245 (494)
Q Consensus 210 pa~~lv~~~~~~~~~a~lv~IN~~p~~~h~~a~l~~ 245 (494)
...+++..+ ...+..+-++|-.||-...+|.|.-
T Consensus 261 Sg~r~i~~a--~~~k~pi~IvNIGpTRaD~~a~lKl 294 (305)
T KOG2683|consen 261 SGFRFIRHA--HEKKKPIAIVNIGPTRADDMATLKL 294 (305)
T ss_pred HHHHHHHHH--HhhcCcEEEEecCCcchhheeeeee
Confidence 999999998 5667888899999999888886543
No 21
>KOG2684|consensus
Probab=100.00 E-value=9.9e-35 Score=294.81 Aligned_cols=196 Identities=25% Similarity=0.348 Sum_probs=157.2
Q ss_pred hhhhhhhhhhhhcCCCceEEEEeccccccccccc-ccccccccCCCCcchhhhhHhhCCCCCceeeccCccceeecCCCC
Q psy11832 209 QPFCSLVDKVDVDFPKADLLLIMGTSLVVQPFCS-LVDKTNIRGSDSDNIDNLERIAGLPDDKLVEAHGSFHTSHCLTCR 287 (494)
Q Consensus 209 ~pa~~lv~~~~~~~~~a~lv~IN~~p~~~h~~a~-l~~~~~l~~v~TQNID~Le~~AG~~~~~vvE~HGs~~~~~C~~C~ 287 (494)
+++..|++.. +|+ +..|+..|.+.+ |+++|+++|+|||||||||++||+...+|||+||||++++|++|+
T Consensus 140 ~~F~~~a~~l---~~~------~~~ps~~H~Fi~~L~~~gkLlR~YTQNID~LE~~aGl~~~~lVq~HGSf~t~sCt~C~ 210 (412)
T KOG2684|consen 140 SIFYRFAREL---KPP------SNNPSAFHEFIKLLEKKGKLLRNYTQNIDGLERKAGLSTNKLVQCHGSFKTASCTKCG 210 (412)
T ss_pred HHHHHHHHHh---cCC------ccCCchHHHHHHHHHhcCceeEEeecccchhhhccCCCcCceEEeccccceeeecccc
Confidence 4566666665 444 334999999995 778899999999999999999999988999999999999999999
Q ss_pred CccchHHHHhhhccCCCCCCccCCCCCC---------------CCCCCCcEEe--ccCChhHHHhhhcCCCCCCeEEEec
Q psy11832 288 KDYSVAWMKEGNLLGRMGITLGLHAGGL---------------SSIPGGAEVF--SALCLEFGVHSASAPPHCPRLLINK 350 (494)
Q Consensus 288 ~~y~~~~~~~~i~~~~~~~p~c~~C~g~---------------~~i~~p~ivf--e~l~~~~~~~~~~~~~~~Dlliv~G 350 (494)
..++.+.+++.+...++ |.||.|.+. .+++||+||| |.+|..++.........||||||||
T Consensus 211 ~k~~~~~~~~~~~~~~v--p~CP~C~~~~~~r~~~g~r~~~~~vgvlrP~IvffgE~lP~~~~~~~~~d~d~~DllIviG 288 (412)
T KOG2684|consen 211 YKKPFEELREDIRNQEV--PVCPDCEGKNEKRRGAGKRCESEGVGVLRPDIVFFGENLPDSFHIGVGADLDECDLLIVIG 288 (412)
T ss_pred cccChHHHHHHHhcCcC--ccCcccccccccccCccccccccCccccccceEEecCCCChHHHhhhhccccccceEEEeC
Confidence 99999999887776554 788999641 2478899998 7889999998888888999999999
Q ss_pred cccccCCCCcchhhhcccCCCCCCCCCCcccEEEeCChhHHHHHHHHHhCCCchHHHhhcCccccCCCCCCCccceEEeC
Q psy11832 351 EKVGVGSRNPLMGLLGLSEGLGFDNENNVRDVFLEGDCDSGCQKLADMLGWGIPLMGLLGLSEGLGFDNENNVRDVFLEG 430 (494)
Q Consensus 351 TSl~V~~~~P~a~l~~~~~g~~~~~~~~~~dl~i~g~~~~~~~~L~~~lg~~~~~~~l~~~~~~~~f~~~~~~~Dv~~lg 430 (494)
|||+| .|++.++... . ..+|+ .++|+....+ ..+|+.++|
T Consensus 289 TSLKV---~pV~~iv~~~-----~---------------~~vpq------------IliNr~~v~h-----~efd~~ll~ 328 (412)
T KOG2684|consen 289 TSLKV---RPVAEIVKSF-----P---------------AKVPQ------------ILINRDPVPH-----AEFDVELLG 328 (412)
T ss_pred Ccccc---ccHHHHHhhh-----c---------------ccCcE------------EEecCccccc-----cccChhhcc
Confidence 99999 8877775321 0 00111 1334333333 338999999
Q ss_pred CcHHHHHHHHHHcCCchhhhhhhcc
Q psy11832 431 DCDSGCQKLADMLGWGIPLMGLLGL 455 (494)
Q Consensus 431 dcD~~~~~l~~~lgW~~el~~l~~~ 455 (494)
|||+++..++..+||..+++++-.+
T Consensus 329 ~CD~v~~~l~~~~g~~~~~~~~~~l 353 (412)
T KOG2684|consen 329 DCDDVIRLLCQKCGWLKPLLSLNDL 353 (412)
T ss_pred chHHHHHHHHhhccccchHhhhhhh
Confidence 9999999999999999988888744
No 22
>KOG1905|consensus
Probab=100.00 E-value=5.7e-35 Score=284.17 Aligned_cols=199 Identities=27% Similarity=0.398 Sum_probs=168.6
Q ss_pred cccCCCCCccCCCCccccccccCCCCCcchhcchhHHhhChHHHHHHHHHHCCCCCCCChhHHHHHHHhhhhhhhhhhcc
Q psy11832 2 FGAAGIPDFRSPGSGLYDNLEKYKLPHPMAIFELDYFKHRPEAFYTLAKELYPGSFKPTPCHYFLKLLHQKNLLLRHFTQ 81 (494)
Q Consensus 2 ~~~SGIPdFRg~~~Glw~~~~~~~~~~~~~~~~~~~f~~~P~~f~~~~~~~~~~~~~Pn~~h~~l~~l~~~~~~~~~~~~ 81 (494)
+|+||||||||+ .|+|+..++..- .. .
T Consensus 67 STaa~IPDfRGp-~GVWTL~~kG~~--~~--------------------------------------------------~ 93 (353)
T KOG1905|consen 67 STAAGIPDFRGP-QGVWTLQQKGKD--KF--------------------------------------------------G 93 (353)
T ss_pred ccccCCCCccCC-CceeehhhcCcc--cc--------------------------------------------------C
Confidence 799999999999 699997654221 00 1
Q ss_pred cccCCCCCChhHHHHHHHHhcCCccEEEeccccchHHhcCCCCCCEEEecCCcCccccCCCCcccchHHHHHHHh-----
Q psy11832 82 VYWGSFKPTPCHYFLKLLHQKNLLLRHFTQNIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDYSVAWMKERIF----- 156 (494)
Q Consensus 82 ~~~~~~~Pn~~H~~La~L~~~~~~~~iiTQNIDgLh~kAG~~~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~i~----- 156 (494)
..+..|.|+.+|++|.+|++.|++.+||||||||||.|+|+|.+++.|+|||++..+|.+|..+|-++...+.+.
T Consensus 94 ~df~~ArPt~THmai~~Lhr~gll~~viSQNvDGLhlrsGlPr~~LsElHGNmfiEvC~sC~~~yvr~~~v~t~gl~at~ 173 (353)
T KOG1905|consen 94 VDFSEARPTVTHMAIVALHRAGLLKHVISQNVDGLHLRSGLPREKLSELHGNMFIEVCKSCRPEYVRDRVVDTVGLKATG 173 (353)
T ss_pred CchhhcCCcchHHHHHHHHHcchhhhhhhccccchhhccCCCHHHHHHHhcchHHHHhhhhcccceehhheeeccccccc
Confidence 124568999999999999999999999999999999999999999999999999999999999987766554331
Q ss_pred -hcCCCC---CCCCCCeeeeeEEecCCCCChHHHHHHHhHcCCCCeEEEeCcCCChhhhhhhhhhhhhcCCCceEEEEec
Q psy11832 157 -AEVIPT---CEKCNGLVKPDIVFFGENLPSRYFHRVDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPKADLLLIMG 232 (494)
Q Consensus 157 -~~~~P~---C~~Cgg~lrP~Vv~FgE~~~~~~~~~a~~~~~~aDlllvvGTSl~V~pa~~lv~~~~~~~~~a~lv~IN~ 232 (494)
.-..-+ |..|.|.++..++-+...+|...|+.|.++.+.||++|++||||+|-|...++-.+ ...+.++++||+
T Consensus 174 R~ct~~k~~~~rscrg~l~d~~ldwe~~lpln~l~~a~~a~~~Ad~~lcLGTSLqI~p~g~lpl~~--~k~g~K~~ivNl 251 (353)
T KOG1905|consen 174 RHCTGRKCRKCRSCRGTLRDFGLDWEDELPLNDLDRATKAAKRADLILCLGTSLQILPKGNLPLKM--KKRGGKIVIVNL 251 (353)
T ss_pred ccccccccccccccccchhhccccccccCCchhhHHHHHHhhhcceEEEeccceEeeeCCCcchhH--hccCceEEEEeC
Confidence 113334 55666888999999999999999999999999999999999999999999999888 458899999999
Q ss_pred ccccccccccccccccccCCCCc
Q psy11832 233 TSLVVQPFCSLVDKTNIRGSDSD 255 (494)
Q Consensus 233 ~p~~~h~~a~l~~~~~l~~v~TQ 255 (494)
++|...+.|++.-+|+..-|.++
T Consensus 252 Q~T~hDk~A~l~Ihg~vd~Vm~~ 274 (353)
T KOG1905|consen 252 QWTPHDKIANLKIHGKVDLVMAS 274 (353)
T ss_pred ccCcccchhheeehhhHHHHHHH
Confidence 99999999999988876655443
No 23
>KOG2682|consensus
Probab=99.97 E-value=1e-31 Score=254.15 Aligned_cols=111 Identities=66% Similarity=1.216 Sum_probs=108.2
Q ss_pred EEeccccchHHhcCCCCCCEEEecCCcCccccC-CCCcccchHHHHHHHhhcCCCCCCCCCCeeeeeEEecCCCCChHHH
Q psy11832 108 HFTQNIDNLERIAGLPDDKLVEAHGSFHTSHCL-TCRKDYSVAWMKERIFAEVIPTCEKCNGLVKPDIVFFGENLPSRYF 186 (494)
Q Consensus 108 iiTQNIDgLh~kAG~~~~~v~elHG~~~~~~C~-~C~~~~~~~~~~~~i~~~~~P~C~~Cgg~lrP~Vv~FgE~~~~~~~ 186 (494)
+||||||+|.+.||+|.+.++|.||++...+|. .|++.|+.+|++..+....+|+|+.|+|.+||+||||||++|.+++
T Consensus 124 ~YTQNIDtLER~aGv~d~~lvEAHGtFa~s~Ci~~C~~~yp~e~~ka~i~~~~vpkC~vC~~lVKP~IVFfGE~LP~rF~ 203 (314)
T KOG2682|consen 124 CYTQNIDTLERIAGVPDEDLVEAHGTFATSHCISSCRHEYPLEWMKAKIMSEVVPKCEVCQGLVKPDIVFFGESLPARFF 203 (314)
T ss_pred HHhccchHHHHhcCCCHHHHHHhccceeeeeehhhhcCcCCHHHHHHHHHhccCCCCchhhccccccEEEecCCccHHHH
Confidence 799999999999999999999999999999999 5999999999999999999999999999999999999999999999
Q ss_pred HHHHhHcCCCCeEEEeCcCCChhhhhhhhhhh
Q psy11832 187 HRVDVDFPKADLLLIMGTSLVVQPFCSLVDKV 218 (494)
Q Consensus 187 ~~a~~~~~~aDlllvvGTSl~V~pa~~lv~~~ 218 (494)
+-.......+|++|||||||.|+|++++++.+
T Consensus 204 e~~~~D~~~~dl~lV~GTSL~V~PFAsLpe~v 235 (314)
T KOG2682|consen 204 ECMQSDFLKVDLLLVMGTSLQVQPFASLPEKV 235 (314)
T ss_pred HHHhhcccccceEEEeccceeeeecccchhhh
Confidence 99999999999999999999999999999887
No 24
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=99.96 E-value=1.7e-30 Score=256.17 Aligned_cols=161 Identities=19% Similarity=0.210 Sum_probs=135.0
Q ss_pred ecccccccccc-cccccccccCCCCcchhhhhHhhCCCCCceeeccCccceeecCCCCCccchHHHHhhhccCCCCCCcc
Q psy11832 231 MGTSLVVQPFC-SLVDKTNIRGSDSDNIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDYSVAWMKEGNLLGRMGITLG 309 (494)
Q Consensus 231 N~~p~~~h~~a-~l~~~~~l~~v~TQNID~Le~~AG~~~~~vvE~HGs~~~~~C~~C~~~y~~~~~~~~i~~~~~~~p~c 309 (494)
+.+|+..|.+. .|+++|++.+||||||||||++|| +++|+|+|||+.+.+|++|++.|+.+.+.+.+... ..|.|
T Consensus 71 ~~~Pn~~H~ala~L~~~g~~~~viTQNIDgLh~~aG--~~~VielHG~~~~~~C~~C~~~~~~~~~~~~~~~~--~~p~C 146 (244)
T PRK14138 71 EAKPNLAHVLLAKLEEKGLIEAVITQNIDRLHQKAG--SKKVIELHGNVEEYYCVRCGKRYTVEDVIEKLEKS--DVPRC 146 (244)
T ss_pred cCCCCHHHHHHHHHHHcCCceEEEeecccChhhHcC--CCeEEEccCCcCeeEECCCCCcccHHHHHHHHhcC--CCCCC
Confidence 56788888875 688889999999999999999999 78999999999999999999999988776543222 35889
Q ss_pred CCCCCCCCCCCCcEEe--ccCChhHHHhhhcCCCCCCeEEEeccccccCCCCcchhhhccc--CCC-------CCCCCCC
Q psy11832 310 LHAGGLSSIPGGAEVF--SALCLEFGVHSASAPPHCPRLLINKEKVGVGSRNPLMGLLGLS--EGL-------GFDNENN 378 (494)
Q Consensus 310 ~~C~g~~~i~~p~ivf--e~l~~~~~~~~~~~~~~~Dlliv~GTSl~V~~~~P~a~l~~~~--~g~-------~~~~~~~ 378 (494)
|.|+| ..||+||| |++|..+++.+.+.+.+||++|||||||.| +|++.|+..+ .|. +.++.+.
T Consensus 147 p~Cgg---~lrP~Vv~FgE~~p~~~~~~~~~~~~~aDl~lviGTSl~V---~pa~~l~~~~~~~g~~~i~iN~~~t~~d~ 220 (244)
T PRK14138 147 DDCSG---LIRPNIVFFGEALPQDALREAIRLSSKASLMIVMGSSLVV---YPAAELPLITVRSGGKLVIVNLGETPLDD 220 (244)
T ss_pred CCCCC---eECCCEEECCCcCCHHHHHHHHHHHhcCCEEEEeCcCCee---ecHhHHHHHHHHcCCeEEEEcCCCCCCCc
Confidence 99998 47788777 677887888888889999999999999999 9999987543 233 3344567
Q ss_pred cccEEEeCChhHHHHHHHHHhCC
Q psy11832 379 VRDVFLEGDCDSGCQKLADMLGW 401 (494)
Q Consensus 379 ~~dl~i~g~~~~~~~~L~~~lg~ 401 (494)
.+|++|+|++++.+++|++.+|.
T Consensus 221 ~~~~~i~~~~~~~l~~l~~~~~~ 243 (244)
T PRK14138 221 IATLKYNMDVVEFANRVMSEGGI 243 (244)
T ss_pred ceeEEEeCCHHHHHHHHHHHhCC
Confidence 79999999999999999998873
No 25
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=99.96 E-value=2.1e-30 Score=254.31 Aligned_cols=157 Identities=32% Similarity=0.490 Sum_probs=129.6
Q ss_pred ecccccccccc-cccccccccCCCCcchhhhhHhhCCCCCceeeccCccceeecCCCCCccchHHHHhhhccCCCCCCcc
Q psy11832 231 MGTSLVVQPFC-SLVDKTNIRGSDSDNIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDYSVAWMKEGNLLGRMGITLG 309 (494)
Q Consensus 231 N~~p~~~h~~a-~l~~~~~l~~v~TQNID~Le~~AG~~~~~vvE~HGs~~~~~C~~C~~~y~~~~~~~~i~~~~~~~p~c 309 (494)
+.+|+..|... .|+++|++..+|||||||||++||.++++|+|+|||+++.+|+.|++.|+.+++...+... ..|.|
T Consensus 66 ~a~Pn~~H~~la~L~~~g~~~~viTQNiD~Lh~raG~~~~~V~elHG~l~~~~C~~C~~~~~~~~~~~~~~~~--~~p~C 143 (235)
T cd01408 66 QFKPSVAHYFIKLLEDKGLLLRNYTQNIDTLERVAGVPDDRIIEAHGSFATAHCIKCKHKYPGDWMREDIFNQ--EVPKC 143 (235)
T ss_pred cCCCCHHHHHHHHHHhcCCceEEEEeccchHHHHcCCCccCEEEeCcCCCccccccCCCcCCHHHHHHHHhCC--CCccC
Confidence 56888888875 7888898999999999999999999889999999999999999999999998877655332 25889
Q ss_pred CCCCCCCCCCCCcEEe--ccCChhHHHhhhcCCCCCCeEEEeccccccCCCCcchhhhcccC-CC-------CCCCCC--
Q psy11832 310 LHAGGLSSIPGGAEVF--SALCLEFGVHSASAPPHCPRLLINKEKVGVGSRNPLMGLLGLSE-GL-------GFDNEN-- 377 (494)
Q Consensus 310 ~~C~g~~~i~~p~ivf--e~l~~~~~~~~~~~~~~~Dlliv~GTSl~V~~~~P~a~l~~~~~-g~-------~~~~~~-- 377 (494)
+.|+| ++||+||| |.+|......+.+.+++||++||+||||+| +|+++|+..+. |. +.+..+
T Consensus 144 ~~Cgg---~lrP~Vv~FGE~lp~~~~~~~~~~~~~aDlllvvGTSl~V---~pa~~l~~~~~~~~~~v~iN~~~~~~~~~ 217 (235)
T cd01408 144 PRCGG---LVKPDIVFFGESLPSRFFSHMEEDKEEADLLIVIGTSLKV---APFASLPSRVPSEVPRVLINREPVGHLGK 217 (235)
T ss_pred CCCCC---CccCcEEECCCCCCHHHHHHHHHHHhcCCEEEEECCCCee---ccHHHHHHHHhCCCcEEEEeCCCCCCCCC
Confidence 99998 47788887 567777777777888899999999999999 99999875431 22 223333
Q ss_pred CcccEEEeCChhHHHHHH
Q psy11832 378 NVRDVFLEGDCDSGCQKL 395 (494)
Q Consensus 378 ~~~dl~i~g~~~~~~~~L 395 (494)
..+|++|+|++++++++|
T Consensus 218 ~~~d~~~~~~~~~~l~~~ 235 (235)
T cd01408 218 RPFDVALLGDCDDGVREL 235 (235)
T ss_pred CCcCEEEeCCHHHHHHhC
Confidence 678999999999998875
No 26
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=99.96 E-value=1.8e-30 Score=258.13 Aligned_cols=153 Identities=20% Similarity=0.255 Sum_probs=124.7
Q ss_pred ecccccccccc-cccccccccCCCCcchhhhhHhhCCCCCceeeccCccceeecCCCCCccchHHHHhhhcc--------
Q psy11832 231 MGTSLVVQPFC-SLVDKTNIRGSDSDNIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDYSVAWMKEGNLL-------- 301 (494)
Q Consensus 231 N~~p~~~h~~a-~l~~~~~l~~v~TQNID~Le~~AG~~~~~vvE~HGs~~~~~C~~C~~~y~~~~~~~~i~~-------- 301 (494)
+.+|+..|... .|+++|++.++|||||||||++|| +++|||+|||+++.+|++|+++|+.+++.+.+..
T Consensus 70 ~~~Pn~~H~~la~L~~~g~~~~viTQNIDgLh~~aG--~~~vielHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~ 147 (260)
T cd01409 70 AAQPNAAHRALAALEAAGRLHGLITQNVDGLHTKAG--SRNVVELHGSLHRVVCLSCGFRTPRAELQDRLEALNPGFAEQ 147 (260)
T ss_pred cCCCCHHHHHHHHHHHcCCCeeEEeeccchhHHHcC--CCCEEEEeeecCEEEeCCCcCccCHHHHHHHHhhcCcchhhh
Confidence 45788888774 788889999999999999999999 5899999999999999999999998776543211
Q ss_pred -----------------CCCCCCccCCCCCCCCCCCCcEEe--ccCChhHHHhhhcCCCCCCeEEEeccccccCCCCcch
Q psy11832 302 -----------------GRMGITLGLHAGGLSSIPGGAEVF--SALCLEFGVHSASAPPHCPRLLINKEKVGVGSRNPLM 362 (494)
Q Consensus 302 -----------------~~~~~p~c~~C~g~~~i~~p~ivf--e~l~~~~~~~~~~~~~~~Dlliv~GTSl~V~~~~P~a 362 (494)
.....|.|+.|+| ++||+||| |++|..++..+.+.+++||++|||||||.| +|++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~p~C~~Cgg---~lrP~VV~FGE~lp~~~~~~a~~~~~~aDlllviGTSl~V---~pa~ 221 (260)
T cd01409 148 AAGQAPDGDVDLEDEQVAGFRVPECERCGG---VLKPDVVFFGENVPRDRVVTAAARLAEADALLVLGSSLMV---YSGY 221 (260)
T ss_pred hcccCCCcccccchhhcccCCCCCCCCCCC---EECCCEEECCCCCCHHHHHHHHHHHhcCCEEEEeCcCcee---cchh
Confidence 0112478999987 58888888 677888888999999999999999999999 9999
Q ss_pred hhhccc--CCC-------CCCCCCCcccEEEeCChhHH
Q psy11832 363 GLLGLS--EGL-------GFDNENNVRDVFLEGDCDSG 391 (494)
Q Consensus 363 ~l~~~~--~g~-------~~~~~~~~~dl~i~g~~~~~ 391 (494)
.++..+ .|. +.+..+..+|+.|.|+++++
T Consensus 222 ~l~~~a~~~g~~viiIN~~~t~~d~~a~~~i~~~~~~~ 259 (260)
T cd01409 222 RFVLAAAEAGLPIAIVNIGPTRADHLATLKVDARCGEV 259 (260)
T ss_pred hHHHHHHHCCCcEEEEcCCCCCCCccccEEEeCChhhh
Confidence 988654 333 34445677899999999865
No 27
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=99.96 E-value=4.1e-30 Score=247.42 Aligned_cols=149 Identities=22% Similarity=0.202 Sum_probs=120.5
Q ss_pred ccccccccc-ccccccccccCCCCcchhhhhHhhCCCCCceeeccCccceeecCCCCCccchHHHHhhhccCCCCCCccC
Q psy11832 232 GTSLVVQPF-CSLVDKTNIRGSDSDNIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDYSVAWMKEGNLLGRMGITLGL 310 (494)
Q Consensus 232 ~~p~~~h~~-a~l~~~~~l~~v~TQNID~Le~~AG~~~~~vvE~HGs~~~~~C~~C~~~y~~~~~~~~i~~~~~~~p~c~ 310 (494)
.+|+..|.. ++|+++|++.++|||||||||++||.++++|+|+|||+++.+|++|++.|+.+++.+.+... ...|.|+
T Consensus 46 ~~Pn~~H~~La~l~~~g~~~~viTQNID~Lh~~AG~~~~~vielHG~~~~~~C~~C~~~~~~~~~~~~~~~~-~~~p~C~ 124 (206)
T cd01410 46 AEPTLTHMALVELERAGLLKFVISQNVDGLHLRSGLPREKLSELHGNMFIEVCKSCGPEYVRDDVVETRGDK-ETGRRCH 124 (206)
T ss_pred CCCCHHHHHHHHHHHCCCCceEEecCccchHhHcCcCcccEEEecCCcCcccCCCCCCccchHHHHHHhhcC-CCCCcCC
Confidence 467777776 47888899999999999999999999889999999999999999999999988776554322 2358899
Q ss_pred CCCCCCCCCCCcEEe--ccCChhHHHhhhcCCCCCCeEEEeccccccCCCCcchhhhccc--CCC-------CCCCCCCc
Q psy11832 311 HAGGLSSIPGGAEVF--SALCLEFGVHSASAPPHCPRLLINKEKVGVGSRNPLMGLLGLS--EGL-------GFDNENNV 379 (494)
Q Consensus 311 ~C~g~~~i~~p~ivf--e~l~~~~~~~~~~~~~~~Dlliv~GTSl~V~~~~P~a~l~~~~--~g~-------~~~~~~~~ 379 (494)
.|+| +.||+||| |++|..++..+.+.+++||+||||||||.| +|+++|+..+ .|. +.+..+..
T Consensus 125 ~Cgg---~lrP~VV~FgE~lp~~~~~~a~~~~~~aDlllviGTSl~V---~pa~~l~~~~~~~g~~vi~iN~~~~~~d~~ 198 (206)
T cd01410 125 ACGG---ILKDTIVDFGERLPPENWMGAAAAACRADLFLCLGTSLQV---TPAANLPLKAARAGGRLVIVNLQPTPKDKL 198 (206)
T ss_pred CCcC---ccCCcEEECCCCCCHHHHHHHHHHHhcCCEEEEECcCcee---hhHHHHHHHHHhcCCeEEEECCCCCCCCcc
Confidence 9998 47888888 567777788888899999999999999999 9999998543 233 23334456
Q ss_pred ccEEEeCC
Q psy11832 380 RDVFLEGD 387 (494)
Q Consensus 380 ~dl~i~g~ 387 (494)
+|++|+|+
T Consensus 199 ~d~~~~~~ 206 (206)
T cd01410 199 ADLVIHGD 206 (206)
T ss_pred ccEEEeCC
Confidence 77777664
No 28
>COG0846 SIR2 NAD-dependent protein deacetylases, SIR2 family [Transcription]
Probab=99.96 E-value=3e-30 Score=253.38 Aligned_cols=160 Identities=22% Similarity=0.208 Sum_probs=131.4
Q ss_pred cccccccccc-cccccccccCCCCcchhhhhHhhCCCCCceeeccCccceeecCCCCCccchHHHHhhhccCCCCCCccC
Q psy11832 232 GTSLVVQPFC-SLVDKTNIRGSDSDNIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDYSVAWMKEGNLLGRMGITLGL 310 (494)
Q Consensus 232 ~~p~~~h~~a-~l~~~~~l~~v~TQNID~Le~~AG~~~~~vvE~HGs~~~~~C~~C~~~y~~~~~~~~i~~~~~~~p~c~ 310 (494)
.+|+..|.+. +|++++++.++|||||||||++|| +++|||+|||+.+.+|++|+..|+.+++...+.. ..+|.|+
T Consensus 75 a~Pn~~H~~la~le~~~~~~~iiTQNiD~Lhe~AG--s~~Vi~lHGsl~~~~C~~C~~~~~~~~~~~~~~~--~~~p~C~ 150 (250)
T COG0846 75 AQPNKAHYALAELEDKGKLLRIITQNIDGLHERAG--SKNVIELHGSLKRVRCSKCGNQYYDEDVIKFIED--GLIPRCP 150 (250)
T ss_pred CCCCHHHHHHHHHhhcCCceEEEecccchHHHHcC--CCcEEEeccceeeeEeCCCcCccchhhhhhhccc--CCCCcCc
Confidence 5788888877 688888899999999999999999 6799999999999999999999987775443322 2468999
Q ss_pred CCCCCCCCCCCcEEe--ccCChhHHHhhhcCCCCCCeEEEeccccccCCCCcchhhhccc--CCC-------CCCCCCCc
Q psy11832 311 HAGGLSSIPGGAEVF--SALCLEFGVHSASAPPHCPRLLINKEKVGVGSRNPLMGLLGLS--EGL-------GFDNENNV 379 (494)
Q Consensus 311 ~C~g~~~i~~p~ivf--e~l~~~~~~~~~~~~~~~Dlliv~GTSl~V~~~~P~a~l~~~~--~g~-------~~~~~~~~ 379 (494)
.|++. ++||+||| |++|..++..+.+..+.||+|||+|||+.| +|++.++..+ .|. +.+..+..
T Consensus 151 ~Cg~~--~lrP~VV~fGE~lp~~~~~~~~~~~~~~d~liviGTSl~V---~Paa~~p~~~~~~g~~~i~iN~~~~~~~~~ 225 (250)
T COG0846 151 KCGGP--VLRPDVVWFGEPLPASFLDEALEALKEADLLIVIGTSLKV---YPAAGLPELAKRRGAKVIEINLEPTRLDPI 225 (250)
T ss_pred cCCCc--cccCCEEEeCCCCCHHHHHHHHHHhccCCEEEEECcceEE---cChhhhhHHHHhcCCEEEEECCCcccCcch
Confidence 99994 46777777 678888888898888999999999999999 9999976533 233 23344577
Q ss_pred ccEEEeCChhHHHHHHHHHhC
Q psy11832 380 RDVFLEGDCDSGCQKLADMLG 400 (494)
Q Consensus 380 ~dl~i~g~~~~~~~~L~~~lg 400 (494)
+|+.+++++++.++.|.+.+.
T Consensus 226 ~d~~i~~~a~~~~~~l~~~~~ 246 (250)
T COG0846 226 ADEVIRGDAGEVLPLLLEELL 246 (250)
T ss_pred hHHHHHhhHHHHHHHHHHHhh
Confidence 889999999999999987654
No 29
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=99.95 E-value=4.1e-28 Score=244.59 Aligned_cols=163 Identities=18% Similarity=0.200 Sum_probs=128.9
Q ss_pred ecccccccccc-cccccccccCCCCcchhhhhHhhCCCCCceeeccCccceeecCCCCCccchHHHHhhhcc--------
Q psy11832 231 MGTSLVVQPFC-SLVDKTNIRGSDSDNIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDYSVAWMKEGNLL-------- 301 (494)
Q Consensus 231 N~~p~~~h~~a-~l~~~~~l~~v~TQNID~Le~~AG~~~~~vvE~HGs~~~~~C~~C~~~y~~~~~~~~i~~-------- 301 (494)
+..|+..|... +|+++|++.+||||||||||++|| +++|+|+|||+.+.+|++|++.|+.+.+...+..
T Consensus 80 ~~~Pn~~H~aLa~L~~~g~~~~viTQNIDgLh~rAG--~~~ViElHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~ 157 (285)
T PRK05333 80 RAQPNAAHHALARLGAAGRIERLVTQNVDGLHQRAG--SRDVIELHGRLDGVRCMGCGARHPRAEIQHVLEAANPEWLAL 157 (285)
T ss_pred cCCCCHHHHHHHHHHHcCCcccEEecccchhHHHcC--CCCEEeecCCcCEEEECCCCCcCCHHHHHHHHhhcCcchhhh
Confidence 55777777664 788889999999999999999999 7899999999999999999999987765433210
Q ss_pred -----------------CCCCCCccCCCCCCCCCCCCcEEe--ccCChhHHHhhhcCCCCCCeEEEeccccccCCCCcch
Q psy11832 302 -----------------GRMGITLGLHAGGLSSIPGGAEVF--SALCLEFGVHSASAPPHCPRLLINKEKVGVGSRNPLM 362 (494)
Q Consensus 302 -----------------~~~~~p~c~~C~g~~~i~~p~ivf--e~l~~~~~~~~~~~~~~~Dlliv~GTSl~V~~~~P~a 362 (494)
.....|.|+.|+| ++||+||| |.+|...+..+.+.+.+||++||||||+.| .|++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~iP~C~~Cgg---~lrP~Vv~FgE~lp~~~~~~a~~~~~~~DlllvvGTSl~V---~p~~ 231 (285)
T PRK05333 158 EAAPAPDGDADLEWAAFDHFRVPACPACGG---ILKPDVVFFGENVPRERVAAARAALDAADAVLVVGSSLMV---YSGY 231 (285)
T ss_pred hcccCCCccccccccccccCCCCCCCCCCC---cccCCEEEcCCCCCHHHHHHHHHHHhcCCEEEEECcCcee---cchh
Confidence 0112588999998 47888887 667887888888888999999999999999 5665
Q ss_pred hhhccc--CCC-------CCCCCCCcccEEEeCChhHHHHHHHHHhCC
Q psy11832 363 GLLGLS--EGL-------GFDNENNVRDVFLEGDCDSGCQKLADMLGW 401 (494)
Q Consensus 363 ~l~~~~--~g~-------~~~~~~~~~dl~i~g~~~~~~~~L~~~lg~ 401 (494)
.++..+ .|. +.+..+..+++.|.|++++++++|.+.||.
T Consensus 232 ~~~~~a~~~g~~~i~IN~~~t~~~~~~~~~i~g~~~evL~~l~~~l~~ 279 (285)
T PRK05333 232 RFCVWAAQQGKPIAALNLGRTRADPLLTLKVEASCAQALAALVARLGL 279 (285)
T ss_pred hhHHHHHHCCCeEEEECCCCCCCCcceeEEEeCCHHHHHHHHHHHhCC
Confidence 554332 222 233445667899999999999999998873
No 30
>PTZ00409 Sir2 (Silent Information Regulator) protein; Provisional
Probab=99.95 E-value=4.6e-28 Score=241.76 Aligned_cols=159 Identities=16% Similarity=0.149 Sum_probs=122.3
Q ss_pred eccccccccc-ccccccccccCCCCcchhhhhHhhCCCCCceeeccCccceeecCCCCCccchHHHHh-hhcc-CCCCCC
Q psy11832 231 MGTSLVVQPF-CSLVDKTNIRGSDSDNIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDYSVAWMKE-GNLL-GRMGIT 307 (494)
Q Consensus 231 N~~p~~~h~~-a~l~~~~~l~~v~TQNID~Le~~AG~~~~~vvE~HGs~~~~~C~~C~~~y~~~~~~~-~i~~-~~~~~p 307 (494)
+.+|+..|.. |.|+++|++..||||||||||++|| +++|+|+|||+++.+|++|++.|+.+.... .... ....+|
T Consensus 89 ~a~PN~~H~aLa~Le~~g~~~~vITQNIDgLh~rAG--s~~V~ElHG~l~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~P 166 (271)
T PTZ00409 89 EIELNPGHVALSTLESLGYLKFVVTQNVDGLHEESG--NTKVIPLHGSVFEARCCTCRKTIQLNKIMLQKTSHFMHQLPP 166 (271)
T ss_pred cCCCCHHHHHHHHHHhcCCCcEEEeccccchHhHcC--CCcEEEeccCcCcceeCCCCCCcccCHHHHhhhhhhccCCCC
Confidence 3567777766 4788899999999999999999999 789999999999999999999987554321 1100 112247
Q ss_pred ccCCCCCCCCCCCCcEEe--ccCChhHHHhhhcCCCCCCeEEEeccccccCCCCcchhhhccc--CCC-------CCCCC
Q psy11832 308 LGLHAGGLSSIPGGAEVF--SALCLEFGVHSASAPPHCPRLLINKEKVGVGSRNPLMGLLGLS--EGL-------GFDNE 376 (494)
Q Consensus 308 ~c~~C~g~~~i~~p~ivf--e~l~~~~~~~~~~~~~~~Dlliv~GTSl~V~~~~P~a~l~~~~--~g~-------~~~~~ 376 (494)
.|+ |+| +.||+||| |.+|...+..+.+.+++||+|||+||||+| +|++.|+..+ .|. +.+..
T Consensus 167 ~C~-Cgg---~lrP~VV~FGE~lp~~~~~~a~~~~~~aDlllviGTSl~V---~pa~~l~~~a~~~g~~vi~IN~~~t~~ 239 (271)
T PTZ00409 167 ECP-CGG---IFKPNVILFGEVIPKSLLKQAEKEIDKCDLLLVVGTSSSV---STATNLCYRAHRKKKKIVEVNISKTYI 239 (271)
T ss_pred CCC-CCC---cccCcEEEeCCcCCHHHHHHHHHHHHcCCEEEEECCCCcc---cCHHHHHHHHHHcCCCEEEECCCCCCC
Confidence 788 887 57888887 667887888888899999999999999999 9999998653 233 22332
Q ss_pred C-CcccEEEeCChhHHHHHHHHHh
Q psy11832 377 N-NVRDVFLEGDCDSGCQKLADML 399 (494)
Q Consensus 377 ~-~~~dl~i~g~~~~~~~~L~~~l 399 (494)
+ ..+|++|.|++++.+. +++.+
T Consensus 240 ~~~~~d~~i~~~~~~~~~-~~~~~ 262 (271)
T PTZ00409 240 TNRISDYHVRAKFSELAQ-ISDIL 262 (271)
T ss_pred CCccccEEEECcHHHHHH-HHHHh
Confidence 3 4579999999988774 54443
No 31
>PTZ00408 NAD-dependent deacetylase; Provisional
Probab=99.95 E-value=4.6e-28 Score=238.28 Aligned_cols=154 Identities=14% Similarity=0.071 Sum_probs=118.6
Q ss_pred eccccccccc-cccccc--ccccCCCCcchhhhhHhhCCCCCceeeccCccceeecCCCCCccchHHHHhhhccCCCCCC
Q psy11832 231 MGTSLVVQPF-CSLVDK--TNIRGSDSDNIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDYSVAWMKEGNLLGRMGIT 307 (494)
Q Consensus 231 N~~p~~~h~~-a~l~~~--~~l~~v~TQNID~Le~~AG~~~~~vvE~HGs~~~~~C~~C~~~y~~~~~~~~i~~~~~~~p 307 (494)
+.+|+..|.. ++|+++ +++..+|||||||||++|| +++|+|+|||+++.+|++|++.|+.+.... ...|
T Consensus 67 ~~~Pn~~H~~L~~Le~~~~~~~~~iiTQNiDgLh~~AG--~~~v~elHG~~~~~~C~~C~~~~~~~~~~~------~~~p 138 (242)
T PTZ00408 67 SVKPNKAHFALAKLEREYRGGKVVVVTQNVDNLHERAG--STHVLHMHGELLKVRCTATGHVFDWTEDVV------HGSS 138 (242)
T ss_pred CCCCCHHHHHHHHHHHhhcCCcEEEEeecccchhhHcC--CCcEEEecCccceEEECCCCcccCchhhhh------cCCC
Confidence 4578888885 567765 6778999999999999999 689999999999999999999998654221 1247
Q ss_pred ccCCCCCCCCCCCCcEEeccC---ChhHHHhhhcCCCCCCeEEEeccccccCCCCcchhhhccc--CCC-------CCCC
Q psy11832 308 LGLHAGGLSSIPGGAEVFSAL---CLEFGVHSASAPPHCPRLLINKEKVGVGSRNPLMGLLGLS--EGL-------GFDN 375 (494)
Q Consensus 308 ~c~~C~g~~~i~~p~ivfe~l---~~~~~~~~~~~~~~~Dlliv~GTSl~V~~~~P~a~l~~~~--~g~-------~~~~ 375 (494)
.|+.|+. .+..||+||||++ |..... +.+.+||+||||||||+| +|+++|+..+ .|. +.+.
T Consensus 139 ~C~~Cg~-~g~lrP~vV~FGE~~~~~~~~~---~~~~~~DlllviGTSl~V---~pa~~l~~~a~~~g~~vi~IN~~~~~ 211 (242)
T PTZ00408 139 RCKCCGC-VGTLRPHIVWFGEMPLYMDEIE---SVMSKTDLFVAVGTSGNV---YPAAGFVGRAQFYGATTLELNLEEGT 211 (242)
T ss_pred ccccCCC-CCCCCCCEEEcCCCCCcHHHHH---HHHHhCCEEEEEccCCcc---ccHHHHHHHHHHcCCeEEEECCCCCC
Confidence 8888871 1268888888554 443333 347789999999999999 9999998654 343 2223
Q ss_pred CCCcccEEEeCChhHHHHHHHHHh
Q psy11832 376 ENNVRDVFLEGDCDSGCQKLADML 399 (494)
Q Consensus 376 ~~~~~dl~i~g~~~~~~~~L~~~l 399 (494)
.+..+|+++.|++.+++++|++++
T Consensus 212 ~~~~~~~~i~g~~~~~l~~l~~~~ 235 (242)
T PTZ00408 212 NYSQFDESIYGKASVIVPAWVDRV 235 (242)
T ss_pred CCccCCEEEECCHHHHHHHHHHHH
Confidence 345678899999999999997765
No 32
>cd01413 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The Sir2 homolog from the archaea Sulfolobus solftaricus deacetylates the non-specific DNA protein Alba to mediate transcription repression.
Probab=99.94 E-value=8e-28 Score=234.21 Aligned_cols=146 Identities=19% Similarity=0.256 Sum_probs=117.3
Q ss_pred eccccccccc-ccccccccccCCCCcchhhhhHhhCCCCCceeeccCccceeecCCCCCccchHHHHhhhccCCCCCCcc
Q psy11832 231 MGTSLVVQPF-CSLVDKTNIRGSDSDNIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDYSVAWMKEGNLLGRMGITLG 309 (494)
Q Consensus 231 N~~p~~~h~~-a~l~~~~~l~~v~TQNID~Le~~AG~~~~~vvE~HGs~~~~~C~~C~~~y~~~~~~~~i~~~~~~~p~c 309 (494)
+.+|+..|.. ++|+++|++.+||||||||||++|| +++|+|+|||+++.+|++|++.|+.+.++. +.. ...|.|
T Consensus 65 ~a~Pn~~H~~La~L~~~~~~~~viTQNiDgLh~~AG--~~~v~elHG~l~~~~C~~C~~~~~~~~~~~-~~~--~~~p~C 139 (222)
T cd01413 65 EAQPNKAHYFLAELEKQGIIKAIITQNIDGLHQRAG--SKNVIELHGTLQTAYCVNCGSKYDLEEVKY-AKK--HEVPRC 139 (222)
T ss_pred CCCCCHHHHHHHHHHhcCCCeEEEEeccchhhHHcC--CCcEEEccCCcCcceECCCCCCcchhHHHH-hcc--CCCCcC
Confidence 4577777766 4788889999999999999999999 789999999999999999999999887632 211 235889
Q ss_pred CCCCCCCCCCCCcEEe--ccCChhHHHhhhcCCCCCCeEEEeccccccCCCCcchhhhccc--CCC-------CCCCCCC
Q psy11832 310 LHAGGLSSIPGGAEVF--SALCLEFGVHSASAPPHCPRLLINKEKVGVGSRNPLMGLLGLS--EGL-------GFDNENN 378 (494)
Q Consensus 310 ~~C~g~~~i~~p~ivf--e~l~~~~~~~~~~~~~~~Dlliv~GTSl~V~~~~P~a~l~~~~--~g~-------~~~~~~~ 378 (494)
+.|+| +.||+||| |.+|..++..+.+.+.+||++|||||||.| +|++.|+..+ .|. +.+..+.
T Consensus 140 ~~Cgg---~lrP~Vv~fgE~lp~~~~~~a~~~~~~~Dl~lvvGTSl~V---~p~~~l~~~a~~~g~~~i~iN~~~~~~~~ 213 (222)
T cd01413 140 PKCGG---IIRPDVVLFGEPLPQALLREAIEAAKEADLFIVLGSSLVV---YPANLLPLIAKENGAKLVIVNADETPFDY 213 (222)
T ss_pred CCCCC---ccCCCEEECCCCCCHHHHHHHHHHHhcCCEEEEEccCCEe---ccHhHHHHHHHHcCCeEEEEcCCCCCCCc
Confidence 99998 47888887 677888888888899999999999999999 9999988653 233 2233445
Q ss_pred cccEEEeCC
Q psy11832 379 VRDVFLEGD 387 (494)
Q Consensus 379 ~~dl~i~g~ 387 (494)
.+|++|.|+
T Consensus 214 ~~~~~i~~~ 222 (222)
T cd01413 214 IADLVIQDK 222 (222)
T ss_pred ceeEEEeCC
Confidence 577777663
No 33
>PRK00481 NAD-dependent deacetylase; Provisional
Probab=99.94 E-value=4e-27 Score=232.23 Aligned_cols=155 Identities=19% Similarity=0.195 Sum_probs=126.5
Q ss_pred eccccccccc-ccccccccccCCCCcchhhhhHhhCCCCCceeeccCccceeecCCCCCccchHHHHhhhccCCCCCCcc
Q psy11832 231 MGTSLVVQPF-CSLVDKTNIRGSDSDNIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDYSVAWMKEGNLLGRMGITLG 309 (494)
Q Consensus 231 N~~p~~~h~~-a~l~~~~~l~~v~TQNID~Le~~AG~~~~~vvE~HGs~~~~~C~~C~~~y~~~~~~~~i~~~~~~~p~c 309 (494)
+.+|+..|.. ++|+++|++.++|||||||||++|| .++|+|+|||+.+.+|++|++.|+.+.+.. ...|.|
T Consensus 74 ~~~Pn~~H~~L~~L~~~~~~~~viTqNiD~L~~~aG--~~~v~elHG~~~~~~C~~C~~~~~~~~~~~------~~~p~C 145 (242)
T PRK00481 74 DAKPNAAHRALAELEKLGKLVTVITQNIDGLHERAG--SKNVIELHGSLLRARCTKCGQTYDLDEYLK------PEPPRC 145 (242)
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEEEeccchhHHHcC--CCceeeccCCcCceeeCCCCCCcChhhhcc------CCCCCC
Confidence 5678888865 4788889999999999999999999 689999999999999999999998776532 125679
Q ss_pred CCCCCCCCCCCCcEEe--ccCChhHHHhhhcCCCCCCeEEEeccccccCCCCcchhhhcc--cCCC-------CCCCCCC
Q psy11832 310 LHAGGLSSIPGGAEVF--SALCLEFGVHSASAPPHCPRLLINKEKVGVGSRNPLMGLLGL--SEGL-------GFDNENN 378 (494)
Q Consensus 310 ~~C~g~~~i~~p~ivf--e~l~~~~~~~~~~~~~~~Dlliv~GTSl~V~~~~P~a~l~~~--~~g~-------~~~~~~~ 378 (494)
|.|+| ..||+||| |.+|...+..+.+..+++|++||+|||+.| +|++.++.. ..+. +.+..+.
T Consensus 146 ~~Cgg---~lrP~Vv~fge~~~~~~~~~a~~~~~~~dl~lviGTsl~V---~p~~~l~~~~~~~~~~~i~iN~~~~~~~~ 219 (242)
T PRK00481 146 PKCGG---ILRPDVVLFGEMLPELAIDEAYEALEEADLFIVIGTSLVV---YPAAGLPYEAREHGAKTVEINLEPTPLDS 219 (242)
T ss_pred CCCCC---ccCCCeEECCCCCCHHHHHHHHHHHhcCCEEEEECCCceE---cCHhHHHHHHHHCCCeEEEECCCCCCCCC
Confidence 99988 47788887 667777777788888899999999999999 899998852 2233 2222345
Q ss_pred cccEEEeCChhHHHHHHHHHh
Q psy11832 379 VRDVFLEGDCDSGCQKLADML 399 (494)
Q Consensus 379 ~~dl~i~g~~~~~~~~L~~~l 399 (494)
.+|+.|.|++.+++++|++.+
T Consensus 220 ~~~~~i~~~~~~~l~~l~~~~ 240 (242)
T PRK00481 220 LFDLVIHGKAGEVVPELVEEL 240 (242)
T ss_pred ccCEEEECCHHHHHHHHHHHh
Confidence 589999999999999997765
No 34
>PF02146 SIR2: Sir2 family; InterPro: IPR003000 These sequences represent the Sirtuin (Sir2-related) family of NAD+-dependent deacetylases. This family of enzymes is broadly conserved from bacteria to humans. In yeast, Sir2 proteins form complexes with other proteins to silence chromatin by accessing histones and deacetylating them. Sir2 proteins have been proposed to play a role in silencing, chromosome stability and ageing []. The bacterial enzyme CobB, an homologue of Sir2, is a phosphoribosyltransferase []. An in vitro ADP ribosyltransferase activity has also been associated with human members of this family []. Sir2-like enzymes employ NAD+ as a cosubstrate in deacetylation reactions [] and catalyse a reaction in which the cleavage of NAD(+)and histone and/or protein deacetylation are coupled to the formation of O-acetyl-ADP-ribose, a novel metabolite. The dependence of the reaction on both NAD(+) and the generation of this potential second messenger offers new clues to understanding the function and regulation of nuclear, cytoplasmic and mitochondrial Sir2-like enzymes []. Silent Information Regulator protein of Saccharomyces cerevisiae (Sir2) is one of several factors critical for silencing at least three loci. Among them, it is unique because it silences the rDNA as well as the mating type loci and telomeres []. Sir2 interacts in a complex with itself and with Sir3 and Sir4, two proteins that are able to interact with nucleosomes. In addition Sir2 also interacts with ubiquitination factors and/or complexes []. Homologues of Sir2 share a core domain including the GAG and NID motifs and a putative C4 Zinc finger. The regions containing these three conserved motifs are individually essential for Sir2 silencing function, as are the four cysteins []. In addition, the conserved residues HG next to the putative Zn finger have been shown to be essential for the ADP ribosyltransferase activity []. ; GO: 0008270 zinc ion binding, 0070403 NAD+ binding, 0006476 protein deacetylation; PDB: 1S5P_A 3PKI_E 3PKJ_F 3K35_A 1ICI_A 1M2K_A 1M2G_A 1M2N_B 1M2H_A 1M2J_A ....
Probab=99.94 E-value=5.7e-28 Score=227.49 Aligned_cols=117 Identities=21% Similarity=0.212 Sum_probs=92.1
Q ss_pred ecccccccccc-cccccccccCCCCcchhhhhHhhCCCCCceeeccCccceeecCCCCCccchHHHHhhhccCCCCCCcc
Q psy11832 231 MGTSLVVQPFC-SLVDKTNIRGSDSDNIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDYSVAWMKEGNLLGRMGITLG 309 (494)
Q Consensus 231 N~~p~~~h~~a-~l~~~~~l~~v~TQNID~Le~~AG~~~~~vvE~HGs~~~~~C~~C~~~y~~~~~~~~i~~~~~~~p~c 309 (494)
..+|+..|... +|++++++.+||||||||||++||+ ++|+|+|||+++.+|+.|++.|+.+.+...+... ..|.|
T Consensus 57 ~a~Pn~~H~~La~L~~~g~~~~viTQNIDgLh~~AG~--~~vielHG~l~~~~C~~C~~~~~~~~~~~~~~~~--~~~~C 132 (178)
T PF02146_consen 57 DAEPNPGHRALAELEKKGKLKRVITQNIDGLHQKAGS--PKVIELHGSLFRLRCSKCGKEYDREDIVDSIDEE--EPPRC 132 (178)
T ss_dssp TS---HHHHHHHHHHHTTSEEEEEES-SSSHHHHTTE--SCEEETTEEEEEEEETTTSBEEEGHHHHHHHHTT--SSCBC
T ss_pred cCCCChhHHHHHHHHHhhhhccceecccchhhhcccc--hhhHHHHhhhceeeecCCCccccchhhccccccc--ccccc
Confidence 46788888776 6888999999999999999999995 4999999999999999999999988876655433 34688
Q ss_pred CCCCCCCCCCCCcEEe--ccCChhHHHhhhcCCCCCCeEEEecccccc
Q psy11832 310 LHAGGLSSIPGGAEVF--SALCLEFGVHSASAPPHCPRLLINKEKVGV 355 (494)
Q Consensus 310 ~~C~g~~~i~~p~ivf--e~l~~~~~~~~~~~~~~~Dlliv~GTSl~V 355 (494)
+.|++ ++||+||| |++| ..+..+.+.+..||++|||||||+|
T Consensus 133 ~~C~~---~lrp~vv~fgE~~~-~~~~~~~~~~~~~Dl~lviGTSl~V 176 (178)
T PF02146_consen 133 PKCGG---LLRPDVVLFGESLP-EEIEEAIEDAEEADLLLVIGTSLQV 176 (178)
T ss_dssp TTTSC---BEEEEE--BTSB-S-HHHHHHHHHHHH-SEEEEESS-STS
T ss_pred cccCc---cCCCCeeecCCCCH-HHHHHHHHHHHcCCEEEEEccCcEE
Confidence 99998 58888888 5667 5667777789999999999999999
No 35
>cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity.
Probab=99.93 E-value=7.3e-27 Score=227.76 Aligned_cols=151 Identities=18% Similarity=0.141 Sum_probs=121.5
Q ss_pred eccccccccc-ccccccccccCCCCcchhhhhHhhCCCCCceeeccCccceeecCCCCCccchHHHHhhhccCCCCCCcc
Q psy11832 231 MGTSLVVQPF-CSLVDKTNIRGSDSDNIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDYSVAWMKEGNLLGRMGITLG 309 (494)
Q Consensus 231 N~~p~~~h~~-a~l~~~~~l~~v~TQNID~Le~~AG~~~~~vvE~HGs~~~~~C~~C~~~y~~~~~~~~i~~~~~~~p~c 309 (494)
+..|+..|.. ++|++++.+.++|||||||||++||. ++|+|+|||+.+.+|+.|++.+..+... . ....|.|
T Consensus 61 ~~~Pn~~H~~L~~L~~~~~~~~viTqNiDgL~~~aG~--~~v~e~HG~~~~~~C~~C~~~~~~~~~~---~--~~~~p~C 133 (224)
T cd01412 61 RAQPNPAHLALAELERRLPNVLLITQNVDGLHERAGS--RNVIELHGSLFRVRCSSCGYVGENNEEI---P--EEELPRC 133 (224)
T ss_pred ccCCCHHHHHHHHHHhcCCCeEEEEccchHhhHHhCC--CceEeeCCCcCccccCCCCCCCCcchhh---h--ccCCCCC
Confidence 4578888874 57888888899999999999999995 9999999999999999999998765321 1 1235889
Q ss_pred CCCCCCCCCCCCcEEe--ccCChhHHHhhhcCCCCCCeEEEeccccccCCCCcchhhhccc--CCC-------CCCCCCC
Q psy11832 310 LHAGGLSSIPGGAEVF--SALCLEFGVHSASAPPHCPRLLINKEKVGVGSRNPLMGLLGLS--EGL-------GFDNENN 378 (494)
Q Consensus 310 ~~C~g~~~i~~p~ivf--e~l~~~~~~~~~~~~~~~Dlliv~GTSl~V~~~~P~a~l~~~~--~g~-------~~~~~~~ 378 (494)
+.|+| ..+|+||| |.+|. .+..+.+.++++|++||||||+.| .|++.++..+ .+. +.+..+.
T Consensus 134 ~~Cgg---~lrp~Vv~fge~~p~-~~~~~~~~~~~~dl~lvlGTsl~v---~p~~~l~~~~~~~~~~~i~iN~~~~~~~~ 206 (224)
T cd01412 134 PKCGG---LLRPGVVWFGESLPL-ALLEAVEALAKADLFLVIGTSGVV---YPAAGLPEEAKERGARVIEINPEPTPLSP 206 (224)
T ss_pred CCCCC---ccCCceEECCCCCHH-HHHHHHHHHHcCCEEEEECcCccc---hhHHHHHHHHHHCCCeEEEECCCCCCCCC
Confidence 99998 57888887 55555 567777788899999999999999 8999988643 233 2333456
Q ss_pred cccEEEeCChhHHHHHH
Q psy11832 379 VRDVFLEGDCDSGCQKL 395 (494)
Q Consensus 379 ~~dl~i~g~~~~~~~~L 395 (494)
.+|+.|.|++++++++|
T Consensus 207 ~~~~~i~g~~~~~l~~l 223 (224)
T cd01412 207 IADFAFRGKAGEVLPAL 223 (224)
T ss_pred cCCEEEECCHHHHHHHh
Confidence 78999999999999887
No 36
>cd01411 SIR2H SIR2H: Uncharacterized prokaryotic Sir2 homologs from several gram positive bacterial species and Fusobacteria; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=99.93 E-value=3.5e-27 Score=230.12 Aligned_cols=142 Identities=19% Similarity=0.235 Sum_probs=114.5
Q ss_pred ecccccccc-cccccccccccCCCCcchhhhhHhhCCCCCceeeccCccceeecCCCCCccchHHHHhhhccCCCCCCcc
Q psy11832 231 MGTSLVVQP-FCSLVDKTNIRGSDSDNIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDYSVAWMKEGNLLGRMGITLG 309 (494)
Q Consensus 231 N~~p~~~h~-~a~l~~~~~l~~v~TQNID~Le~~AG~~~~~vvE~HGs~~~~~C~~C~~~y~~~~~~~~i~~~~~~~p~c 309 (494)
+.+|+..|. +++|++++ +..||||||||||++|| +++|+|+|||+.+.+|++|++.|+.+.+. ..|.|
T Consensus 71 ~~~Pn~~H~~La~L~~~~-~~~viTQNvD~Lh~~aG--~~~v~elHG~~~~~~C~~C~~~~~~~~~~--------~~p~C 139 (225)
T cd01411 71 DAKPNIIHQKMAELEKMG-LKAVITQNIDGLHQKAG--SKNVVEFHGSLYRIYCTVCGKTVDWEEYL--------KSPYH 139 (225)
T ss_pred CCCCCHHHHHHHHHHHcC-CcEEEEeccchhhhhcC--CCcEEEeCCCcCeeEeCCCCCccchhhcC--------CCCCC
Confidence 457777777 45788777 88999999999999999 68999999999999999999998875432 24789
Q ss_pred CCCCCCCCCCCCcEEe--ccCChhHHHhhhcCCCCCCeEEEeccccccCCCCcchhhhcccC-CC-------CCCCCCCc
Q psy11832 310 LHAGGLSSIPGGAEVF--SALCLEFGVHSASAPPHCPRLLINKEKVGVGSRNPLMGLLGLSE-GL-------GFDNENNV 379 (494)
Q Consensus 310 ~~C~g~~~i~~p~ivf--e~l~~~~~~~~~~~~~~~Dlliv~GTSl~V~~~~P~a~l~~~~~-g~-------~~~~~~~~ 379 (494)
+.|+| ++||+||| |.+|...+..+.+..++||++||||||+.| +|++.++.... |. +.+..+..
T Consensus 140 ~~Cgg---~lrP~vv~fge~~~~~~~~~~~~~~~~~DlllviGTSl~v---~p~~~l~~~~~~~~~~i~iN~~~~~~~~~ 213 (225)
T cd01411 140 AKCGG---VIRPDIVLYEEMLNESVIEEAIQAIEKADLLVIVGTSFVV---YPFAGLIDYRQAGANLIAINKEPTQLDSP 213 (225)
T ss_pred CCCCC---EeCCCEEEcCCCCCHHHHHHHHHHHhcCCEEEEECcCCee---hhHHHHHHHHhCCCeEEEECCCCCCCCcc
Confidence 99998 58888887 677777788888888999999999999999 99999876543 33 23334455
Q ss_pred ccEEEeCChhH
Q psy11832 380 RDVFLEGDCDS 390 (494)
Q Consensus 380 ~dl~i~g~~~~ 390 (494)
+|++|.| +++
T Consensus 214 ~~~~~~~-~~~ 223 (225)
T cd01411 214 ATLVIKD-AVK 223 (225)
T ss_pred hhehhcc-hhh
Confidence 7778877 654
No 37
>cd01407 SIR2-fam SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer.
Probab=99.93 E-value=1.1e-26 Score=225.65 Aligned_cols=146 Identities=23% Similarity=0.281 Sum_probs=114.9
Q ss_pred eccccccccc-ccccccccccCCCCcchhhhhHhhCCCCCceeeccCccceeecCCCCCccchHHHHhhhccCCCCCCcc
Q psy11832 231 MGTSLVVQPF-CSLVDKTNIRGSDSDNIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDYSVAWMKEGNLLGRMGITLG 309 (494)
Q Consensus 231 N~~p~~~h~~-a~l~~~~~l~~v~TQNID~Le~~AG~~~~~vvE~HGs~~~~~C~~C~~~y~~~~~~~~i~~~~~~~p~c 309 (494)
+.+|+..|.. ++|++++++.+||||||||||++||. ++|+|+|||+.+.+|+.|++.++.+.+...+.. ...|.|
T Consensus 61 ~~~Pn~~H~~L~~L~~~~~~~~viTQNiDgL~~~aG~--~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~--~~~p~C 136 (218)
T cd01407 61 NAQPNPAHRALAELERKGKLKRVITQNVDGLHQRAGS--PKVIELHGSLFRVRCTKCGKEYPRDELQADIDR--EEVPRC 136 (218)
T ss_pred cCCCCHHHHHHHHHHhcCCCeeEEEeccchhHHHcCC--CCEEECcCCcCcceeCCCcCCCcHHHHhHhhcc--CCCCcC
Confidence 5688888865 47888899999999999999999995 499999999999999999999987765433322 235889
Q ss_pred CCCCCCCCCCCCcEEe--ccCChhHHHhhhcCCCCCCeEEEeccccccCCCCcchhhhcccC--CC-------CCCCCCC
Q psy11832 310 LHAGGLSSIPGGAEVF--SALCLEFGVHSASAPPHCPRLLINKEKVGVGSRNPLMGLLGLSE--GL-------GFDNENN 378 (494)
Q Consensus 310 ~~C~g~~~i~~p~ivf--e~l~~~~~~~~~~~~~~~Dlliv~GTSl~V~~~~P~a~l~~~~~--g~-------~~~~~~~ 378 (494)
|.|+| ..||+||| |.+|.. +..+.+...++|++||+|||+.| +|++.++..+. |. +.+..+.
T Consensus 137 ~~Cg~---~lrP~Vv~fgE~~p~~-~~~a~~~~~~~Dl~lvlGTSl~V---~p~~~l~~~~~~~~~~~i~iN~~~~~~~~ 209 (218)
T cd01407 137 PKCGG---LLRPDVVFFGESLPEE-LDEAAEALAKADLLLVIGTSLQV---YPAAGLPLYAPERGAPVVIINLEPTPADR 209 (218)
T ss_pred CCCCC---ccCCCeEECCCCCcHH-HHHHHHHHhcCCEEEEeCCCccc---ccHHHHHHHHHHCCCeEEEECCCCCCCCc
Confidence 99998 48888887 667776 77777777889999999999999 89999976542 33 2223345
Q ss_pred cccEEEeCC
Q psy11832 379 VRDVFLEGD 387 (494)
Q Consensus 379 ~~dl~i~g~ 387 (494)
.+|+++.|+
T Consensus 210 ~~d~~~~~~ 218 (218)
T cd01407 210 KADLVILGD 218 (218)
T ss_pred cceEEEeCC
Confidence 567777653
No 38
>cd00296 SIR2 SIR2 superfamily of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer. Also included in this superfamily is a group of uncharacterized Sir2-like proteins which lack certain key catalytic
Probab=99.89 E-value=2.4e-23 Score=202.18 Aligned_cols=127 Identities=23% Similarity=0.229 Sum_probs=106.9
Q ss_pred ecccccccccc-cccccccccCCCCcchhhhhHhhCCCCCceeeccCccceeecCCCCCccchHHHHhhhccCCCCCCcc
Q psy11832 231 MGTSLVVQPFC-SLVDKTNIRGSDSDNIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDYSVAWMKEGNLLGRMGITLG 309 (494)
Q Consensus 231 N~~p~~~h~~a-~l~~~~~l~~v~TQNID~Le~~AG~~~~~vvE~HGs~~~~~C~~C~~~y~~~~~~~~i~~~~~~~p~c 309 (494)
+.+|+..|... +|.+++++.++||||||+||++||.+.++|+|+|||+.+.+|+.|++.|+.+.+... ...|.|
T Consensus 63 ~~~P~~~H~~l~~l~~~~~~~~iiTqNiD~L~~~ag~~~~~v~~lHG~~~~~~C~~C~~~~~~~~~~~~-----~~~p~C 137 (222)
T cd00296 63 DAKPNPAHRALAELERKGKLKRIITQNVDGLHERAGSRRNRVIELHGSLDRVRCTSCGKEYPRDEVLER-----EKPPRC 137 (222)
T ss_pred cCCCCHHHHHHHHHHHcCCCceEEecChHHHHHHhCCCcCcEEEecCCCCccEECCCCCCcchhhhhhc-----cCCCCC
Confidence 56788888875 688888899999999999999999888899999999999999999999988776543 346889
Q ss_pred CCCCCCCCCCCCcEEe--ccCChhHHHhhhcCCCCCCeEEEeccccccCCCCcchhhhccc
Q psy11832 310 LHAGGLSSIPGGAEVF--SALCLEFGVHSASAPPHCPRLLINKEKVGVGSRNPLMGLLGLS 368 (494)
Q Consensus 310 ~~C~g~~~i~~p~ivf--e~l~~~~~~~~~~~~~~~Dlliv~GTSl~V~~~~P~a~l~~~~ 368 (494)
+.|+|. .+|+|++ |.+|...+..+.+...++|++|++|||+.| .|+..++..+
T Consensus 138 ~~C~~~---l~p~v~~fge~~~~~~~~~~~~~~~~~d~llviGtSl~v---~~~~~l~~~~ 192 (222)
T cd00296 138 PKCGGL---LRPDVVDFGEALPKEWFDRALEALLEADLVLVIGTSLTV---YPAARLLLRA 192 (222)
T ss_pred CCCCCc---ccCceEECCCCCCHHHHHHHHHHHhcCCEEEEECCCccc---cCHHHHHHHH
Confidence 999984 7778777 556666566777777789999999999999 8888887543
No 39
>KOG2683|consensus
Probab=99.84 E-value=7.9e-22 Score=187.06 Aligned_cols=155 Identities=14% Similarity=0.142 Sum_probs=118.5
Q ss_pred ccccccc-ccccccccccccCCCCcchhhhhHhhCCCCCceeeccCccceeecCCCCCccchHHHHhhhc----------
Q psy11832 232 GTSLVVQ-PFCSLVDKTNIRGSDSDNIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDYSVAWMKEGNL---------- 300 (494)
Q Consensus 232 ~~p~~~h-~~a~l~~~~~l~~v~TQNID~Le~~AG~~~~~vvE~HGs~~~~~C~~C~~~y~~~~~~~~i~---------- 300 (494)
.+|...| .++.|++.+++..+||||+|+||.+|| |+.|.|+|||.++..|+.|+...+...+.+.+.
T Consensus 110 aqPn~~H~ALs~wE~~~r~~wliTQNVD~LH~kAG--S~~~tElHG~~~~VkCl~C~y~~~R~~~Qdrl~~~NP~fke~~ 187 (305)
T KOG2683|consen 110 AQPNPAHYALSKWEKAGRFQWLITQNVDRLHTKAG--SRMVTELHGSAYQVKCLSCGYIEPRQTFQDRLKYLNPGFKEAI 187 (305)
T ss_pred cCCCchhHHHHHHhhcCceEEEeeccchhhhhhcc--ccceeeeccceEEEEecccCcccchHHHHHHHHhcCcchhhhc
Confidence 3455544 567899999999999999999999999 899999999999999999999988766554321
Q ss_pred -c-------C----------CCCCCccCCCCCCCCCCCCcEEe--ccCChhHHHhhhcCCCCCCeEEEeccccccCCCCc
Q psy11832 301 -L-------G----------RMGITLGLHAGGLSSIPGGAEVF--SALCLEFGVHSASAPPHCPRLLINKEKVGVGSRNP 360 (494)
Q Consensus 301 -~-------~----------~~~~p~c~~C~g~~~i~~p~ivf--e~l~~~~~~~~~~~~~~~Dlliv~GTSl~V~~~~P 360 (494)
. + .-.+|.|..|+| ++||||+| +++|.+-.....+.+.+||-+||+||||.| ..
T Consensus 188 ~~~~~~~pDgDv~lpl~~e~gF~IPeC~~CgG---~lKpdV~fFGdnvn~dkv~~~~~~v~e~dg~LvlGsSL~v---~S 261 (305)
T KOG2683|consen 188 VSPGHQRPDGDVELPLEFEEGFQIPECEKCGG---LLKPDVTFFGDNVNKDKVTFCMEKVKECDGFLVLGSSLMV---LS 261 (305)
T ss_pred cCccccCCCCCeecchhhhhcccCCcccccCC---ccCCceEEecCCCChHHHHHHHHHHhccCceEEechhHHH---HH
Confidence 0 0 013688889988 58999999 567777778888899999999999999999 33
Q ss_pred chhhhcccC--CC-------CCCCCCCcccEEEeCChhHHHHH
Q psy11832 361 LMGLLGLSE--GL-------GFDNENNVRDVFLEGDCDSGCQK 394 (494)
Q Consensus 361 ~a~l~~~~~--g~-------~~~~~~~~~dl~i~g~~~~~~~~ 394 (494)
.-.++..+. +. ..+.-|+.+++-|..++++++++
T Consensus 262 g~r~i~~a~~~k~pi~IvNIGpTRaD~~a~lKl~~r~gdvl~~ 304 (305)
T KOG2683|consen 262 GFRFIRHAHEKKKPIAIVNIGPTRADDMATLKLNYRIGEVLKE 304 (305)
T ss_pred HHHHHHHHHhhcCcEEEEecCCcchhheeeeeecchHhhhhhc
Confidence 333333321 11 44555677788888888777654
No 40
>KOG1905|consensus
Probab=99.82 E-value=3.5e-21 Score=188.13 Aligned_cols=169 Identities=18% Similarity=0.170 Sum_probs=130.2
Q ss_pred ecccccccccc-cccccccccCCCCcchhhhhHhhCCCCCceeeccCccceeecCCCCCccchHHHHhhhc-c---CCCC
Q psy11832 231 MGTSLVVQPFC-SLVDKTNIRGSDSDNIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDYSVAWMKEGNL-L---GRMG 305 (494)
Q Consensus 231 N~~p~~~h~~a-~l~~~~~l~~v~TQNID~Le~~AG~~~~~vvE~HGs~~~~~C~~C~~~y~~~~~~~~i~-~---~~~~ 305 (494)
.+.|+.+|.-. +|.+.|.++.||||||||||.+.|+|.+++.|+|||++-..|.+|+.+|-.+..-+.+- . ....
T Consensus 98 ~ArPt~THmai~~Lhr~gll~~viSQNvDGLhlrsGlPr~~LsElHGNmfiEvC~sC~~~yvr~~~v~t~gl~at~R~ct 177 (353)
T KOG1905|consen 98 EARPTVTHMAIVALHRAGLLKHVISQNVDGLHLRSGLPREKLSELHGNMFIEVCKSCRPEYVRDRVVDTVGLKATGRHCT 177 (353)
T ss_pred hcCCcchHHHHHHHHHcchhhhhhhccccchhhccCCCHHHHHHHhcchHHHHhhhhcccceehhheeeccccccccccc
Confidence 45678887655 79999999999999999999999999999999999999999999999987665443321 1 1111
Q ss_pred CCccCCCCCCCCCCCCcEEe--ccCChhHHHhhhcCCCCCCeEEEeccccccCCCCcchhhhccc---CCC------CCC
Q psy11832 306 ITLGLHAGGLSSIPGGAEVF--SALCLEFGVHSASAPPHCPRLLINKEKVGVGSRNPLMGLLGLS---EGL------GFD 374 (494)
Q Consensus 306 ~p~c~~C~g~~~i~~p~ivf--e~l~~~~~~~~~~~~~~~Dlliv~GTSl~V~~~~P~a~l~~~~---~g~------~~~ 374 (494)
.-.|..|+.|.+.+++.+.= ..+|...+..+.....++|++|++||||+| -|.-.++-.. .|. .++
T Consensus 178 ~~k~~~~rscrg~l~d~~ldwe~~lpln~l~~a~~a~~~Ad~~lcLGTSLqI---~p~g~lpl~~~k~g~K~~ivNlQ~T 254 (353)
T KOG1905|consen 178 GRKCRKCRSCRGTLRDFGLDWEDELPLNDLDRATKAAKRADLILCLGTSLQI---LPKGNLPLKMKKRGGKIVIVNLQWT 254 (353)
T ss_pred ccccccccccccchhhccccccccCCchhhHHHHHHhhhcceEEEeccceEe---eeCCCcchhHhccCceEEEEeCccC
Confidence 22345566653334433222 468888899999999999999999999999 5555554322 222 678
Q ss_pred CCCCcccEEEeCChhHHHHHHHHHhCCC
Q psy11832 375 NENNVRDVFLEGDCDSGCQKLADMLGWG 402 (494)
Q Consensus 375 ~~~~~~dl~i~g~~~~~~~~L~~~lg~~ 402 (494)
..|..+++.|+|+++.++.+|++.||.+
T Consensus 255 ~hDk~A~l~Ihg~vd~Vm~~lm~~Lgve 282 (353)
T KOG1905|consen 255 PHDKIANLKIHGKVDLVMASLMELLGVE 282 (353)
T ss_pred cccchhheeehhhHHHHHHHHHHHhCCC
Confidence 8889999999999999999999999854
No 41
>cd01406 SIR2-like Sir2-like: Prokaryotic group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines; and are members of the SIR2 superfamily of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation.
Probab=97.85 E-value=0.00015 Score=71.57 Aligned_cols=118 Identities=17% Similarity=0.170 Sum_probs=72.3
Q ss_pred CCCCCChhHHHHHHHHhcCC-ccEEEeccccchHHhcC--------------------CCCCCEEEecCCcCccccCCCC
Q psy11832 85 GSFKPTPCHYFLKLLHQKNL-LLRHFTQNIDNLERIAG--------------------LPDDKLVEAHGSFHTSHCLTCR 143 (494)
Q Consensus 85 ~~~~Pn~~H~~La~L~~~~~-~~~iiTQNIDgLh~kAG--------------------~~~~~v~elHG~~~~~~C~~C~ 143 (494)
...+|++.|.+|++|...+. ...|||+|.|.|.++|= .....|+.+||++....-.
T Consensus 76 ~~~~~~~~h~~i~~l~~~~~~~~~iiTTNyD~llE~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~klHG~~~~~~~~--- 152 (242)
T cd01406 76 PDFEPSPLHELLLRLFINNEGDVIIITTNYDRLLETALKEINKVVKVIVSVQLALSASARFNGVYKIHGDVDDDESI--- 152 (242)
T ss_pred CCCCCCHHHHHHHhchhccCCceEEEEcchHHHHHHHHHHcCCCCCcccCccccccccCCCceEEEEecccCCCCce---
Confidence 45789999999999977543 56899999999999871 1134677788877543211
Q ss_pred cccchHHHHHHHhhcCCCCCCCCCCeeeeeEEecCCCCChHHHHHHHhHcCCCCeEEEeCcCCChhhhhhhhhhhhhc--
Q psy11832 144 KDYSVAWMKERIFAEVIPTCEKCNGLVKPDIVFFGENLPSRYFHRVDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVD-- 221 (494)
Q Consensus 144 ~~~~~~~~~~~i~~~~~P~C~~Cgg~lrP~Vv~FgE~~~~~~~~~a~~~~~~aDlllvvGTSl~V~pa~~lv~~~~~~-- 221 (494)
..+.+...+... ....+....+.+-..-.+|+||.|+.=..+..+.......
T Consensus 153 -VlT~~dY~~~~~-------------------------~~~~~~~~l~~ll~~~~~LFiG~S~~D~~i~~ll~~~~~~~~ 206 (242)
T cd01406 153 -VLTKSDYERYYL-------------------------KNGWATKFLKSDLEKYTVLFIGYSLTDPNIRYLLERLRKNYE 206 (242)
T ss_pred -EecHHHHHHHHh-------------------------ccHHHHHHHHHHHhcCcEEEEEcCCCCCcHHHHHHHHHHHhc
Confidence 111111111000 0012223333333467899999999999999988876433
Q ss_pred -CCCceEEEEe
Q psy11832 222 -FPKADLLLIM 231 (494)
Q Consensus 222 -~~~a~lv~IN 231 (494)
..+.+++++.
T Consensus 207 ~~~~~hy~~~~ 217 (242)
T cd01406 207 GKHASHFALLQ 217 (242)
T ss_pred cCCCceEEEEe
Confidence 3344455543
No 42
>PF13289 SIR2_2: SIR2-like domain
Probab=93.10 E-value=0.3 Score=43.23 Aligned_cols=50 Identities=14% Similarity=0.129 Sum_probs=29.4
Q ss_pred HHHHHhHcCCCCeEEEeCcCCChhhhhhhhhhhhhcCCC--ceEEEEecccc
Q psy11832 186 FHRVDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPK--ADLLLIMGTSL 235 (494)
Q Consensus 186 ~~~a~~~~~~aDlllvvGTSl~V~pa~~lv~~~~~~~~~--a~lv~IN~~p~ 235 (494)
+..+.+.+-.+..+|+||.|+.=.....+.+.+....+. .+.+.+...+.
T Consensus 76 ~~~~l~~~l~~~~~lfiGys~~D~~i~~~l~~~~~~~~~~~~~~~~v~~~~~ 127 (143)
T PF13289_consen 76 FPNFLRSLLRSKTLLFIGYSFNDPDIRQLLRSALENSGKSRPRHYIVIPDPD 127 (143)
T ss_pred HHHHHHHHHcCCCEEEEEECCCCHHHHHHHHHHHHhccCCCccEEEEEcCCc
Confidence 333444444677888889999877777777666332332 23444444443
No 43
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=85.58 E-value=1.1 Score=39.80 Aligned_cols=49 Identities=20% Similarity=0.232 Sum_probs=35.2
Q ss_pred HHHHhHcCCCCeEEEeCcCCChhhhhhhhhhhhhcCCCceEEEEeccccccc
Q psy11832 187 HRVDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPKADLLLIMGTSLVVQ 238 (494)
Q Consensus 187 ~~a~~~~~~aDlllvvGTSl~V~pa~~lv~~~~~~~~~a~lv~IN~~p~~~h 238 (494)
..+.+.+++||++|++||++.-.........+ .|..++|.|+.+|....
T Consensus 69 ~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~---~~~~~~I~I~~d~~~~~ 117 (137)
T PF00205_consen 69 PAANEALEQADLVLAIGTRLSDFNTYGFSPAF---NPDAKIIQIDPDPAEIG 117 (137)
T ss_dssp HHHHHHHHHSSEEEEESSSSSTTTTTTTTGCS---TTTSEEEEEESSGGGTT
T ss_pred HHHHHHhcCCCEEEEECCCCcccccccccccc---CCCCEEEEEECCHHHhC
Confidence 45667779999999999998765555432222 34558999998887753
No 44
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=84.25 E-value=0.31 Score=34.15 Aligned_cols=34 Identities=26% Similarity=0.587 Sum_probs=22.6
Q ss_pred CccccCCCCcccchHHHHHHHhhcCCCCCCCCCCeee
Q psy11832 135 HTSHCLTCRKDYSVAWMKERIFAEVIPTCEKCNGLVK 171 (494)
Q Consensus 135 ~~~~C~~C~~~~~~~~~~~~i~~~~~P~C~~Cgg~lr 171 (494)
...+|..|++.+..... +.....+.||.||+.++
T Consensus 4 Y~y~C~~Cg~~fe~~~~---~~~~~~~~CP~Cg~~~~ 37 (41)
T smart00834 4 YEYRCEDCGHTFEVLQK---ISDDPLATCPECGGDVR 37 (41)
T ss_pred EEEEcCCCCCEEEEEEe---cCCCCCCCCCCCCCcce
Confidence 45689999997753211 11145678999998654
No 45
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=81.28 E-value=0.41 Score=34.27 Aligned_cols=35 Identities=20% Similarity=0.467 Sum_probs=22.9
Q ss_pred cCccccCCCCcccchHHHHHHHhhcCCCCCCCCCC-eee
Q psy11832 134 FHTSHCLTCRKDYSVAWMKERIFAEVIPTCEKCNG-LVK 171 (494)
Q Consensus 134 ~~~~~C~~C~~~~~~~~~~~~i~~~~~P~C~~Cgg-~lr 171 (494)
++..+|..|++.+.... .+.......||.||+ .++
T Consensus 3 ~Yey~C~~Cg~~fe~~~---~~~~~~~~~CP~Cg~~~~~ 38 (42)
T PF09723_consen 3 IYEYRCEECGHEFEVLQ---SISEDDPVPCPECGSTEVR 38 (42)
T ss_pred CEEEEeCCCCCEEEEEE---EcCCCCCCcCCCCCCCceE
Confidence 35678999998764321 122245778999998 443
No 46
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=80.97 E-value=0.82 Score=41.92 Aligned_cols=30 Identities=27% Similarity=0.586 Sum_probs=22.4
Q ss_pred cCccccCCCCcccchHHHHHHHhhcCCCCCCCCCCe
Q psy11832 134 FHTSHCLTCRKDYSVAWMKERIFAEVIPTCEKCNGL 169 (494)
Q Consensus 134 ~~~~~C~~C~~~~~~~~~~~~i~~~~~P~C~~Cgg~ 169 (494)
...++|.+|++...... ...+|.||+||+.
T Consensus 110 ~G~l~C~~Cg~~~~~~~------~~~l~~Cp~C~~~ 139 (146)
T PF07295_consen 110 PGTLVCENCGHEVELTH------PERLPPCPKCGHT 139 (146)
T ss_pred CceEecccCCCEEEecC------CCcCCCCCCCCCC
Confidence 45789999999754331 2468999999974
No 47
>PRK11032 hypothetical protein; Provisional
Probab=79.88 E-value=0.94 Score=42.12 Aligned_cols=30 Identities=27% Similarity=0.587 Sum_probs=22.0
Q ss_pred cCccccCCCCcccchHHHHHHHhhcCCCCCCCCCCe
Q psy11832 134 FHTSHCLTCRKDYSVAWMKERIFAEVIPTCEKCNGL 169 (494)
Q Consensus 134 ~~~~~C~~C~~~~~~~~~~~~i~~~~~P~C~~Cgg~ 169 (494)
+..+.|.+|++..... ....+|.||+||+.
T Consensus 122 ~G~LvC~~Cg~~~~~~------~p~~i~pCp~C~~~ 151 (160)
T PRK11032 122 LGNLVCEKCHHHLAFY------TPEVLPLCPKCGHD 151 (160)
T ss_pred cceEEecCCCCEEEec------CCCcCCCCCCCCCC
Confidence 3577999999975432 23468999999963
No 48
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=79.13 E-value=1.3 Score=30.91 Aligned_cols=33 Identities=15% Similarity=0.221 Sum_probs=22.1
Q ss_pred cceeecCCCCCccchHHHHhhhccCCCCCCccCCCCCC
Q psy11832 278 FHTSHCLTCRKDYSVAWMKEGNLLGRMGITLGLHAGGL 315 (494)
Q Consensus 278 ~~~~~C~~C~~~y~~~~~~~~i~~~~~~~p~c~~C~g~ 315 (494)
++..+|.+||+.|+...... ......||.|++.
T Consensus 3 ~Y~y~C~~Cg~~fe~~~~~~-----~~~~~~CP~Cg~~ 35 (41)
T smart00834 3 IYEYRCEDCGHTFEVLQKIS-----DDPLATCPECGGD 35 (41)
T ss_pred CEEEEcCCCCCEEEEEEecC-----CCCCCCCCCCCCc
Confidence 35679999999887543111 1345679999983
No 49
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=76.21 E-value=1.7 Score=31.03 Aligned_cols=32 Identities=13% Similarity=0.139 Sum_probs=22.1
Q ss_pred cceeecCCCCCccchHHHHhhhccCCCCCCccCCCCC
Q psy11832 278 FHTSHCLTCRKDYSVAWMKEGNLLGRMGITLGLHAGG 314 (494)
Q Consensus 278 ~~~~~C~~C~~~y~~~~~~~~i~~~~~~~p~c~~C~g 314 (494)
++..+|.+||+.|..-. .+.. .+...||.|++
T Consensus 3 ~Yey~C~~Cg~~fe~~~---~~~~--~~~~~CP~Cg~ 34 (42)
T PF09723_consen 3 IYEYRCEECGHEFEVLQ---SISE--DDPVPCPECGS 34 (42)
T ss_pred CEEEEeCCCCCEEEEEE---EcCC--CCCCcCCCCCC
Confidence 46789999999876432 1111 34577999998
No 50
>PF02591 DUF164: Putative zinc ribbon domain; InterPro: IPR003743 This entry describes proteins of unknown function.
Probab=75.32 E-value=3.3 Score=31.37 Aligned_cols=41 Identities=17% Similarity=0.429 Sum_probs=29.2
Q ss_pred CEEEecCCcCccccCCCCcccchHHHHHHHhhcCCCCCCCCCCee
Q psy11832 126 KLVEAHGSFHTSHCLTCRKDYSVAWMKERIFAEVIPTCEKCNGLV 170 (494)
Q Consensus 126 ~v~elHG~~~~~~C~~C~~~~~~~~~~~~i~~~~~P~C~~Cgg~l 170 (494)
-|..+.|. .|..|+...+...+.+-.....+..||.||..|
T Consensus 16 ~va~v~~~----~C~gC~~~l~~~~~~~i~~~~~i~~Cp~CgRiL 56 (56)
T PF02591_consen 16 AVARVEGG----TCSGCHMELPPQELNEIRKGDEIVFCPNCGRIL 56 (56)
T ss_pred EEEEeeCC----ccCCCCEEcCHHHHHHHHcCCCeEECcCCCccC
Confidence 56666665 799999987766554432334789999999754
No 51
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=72.77 E-value=1.2 Score=33.06 Aligned_cols=31 Identities=23% Similarity=0.668 Sum_probs=20.5
Q ss_pred CccccCCCCcccchHHHHHHHhhcCCCCCCCCCC
Q psy11832 135 HTSHCLTCRKDYSVAWMKERIFAEVIPTCEKCNG 168 (494)
Q Consensus 135 ~~~~C~~C~~~~~~~~~~~~i~~~~~P~C~~Cgg 168 (494)
+..+|..|++.+.... .+.....+.||.||+
T Consensus 4 Yey~C~~Cg~~fe~~~---~~~~~~~~~CP~Cg~ 34 (52)
T TIGR02605 4 YEYRCTACGHRFEVLQ---KMSDDPLATCPECGG 34 (52)
T ss_pred EEEEeCCCCCEeEEEE---ecCCCCCCCCCCCCC
Confidence 4568999999775321 111134567999997
No 52
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=72.74 E-value=2.6 Score=38.53 Aligned_cols=37 Identities=16% Similarity=0.390 Sum_probs=24.8
Q ss_pred ccccCCCCcccchHHHHHHHhhcCCCCCCCCCCeeee
Q psy11832 136 TSHCLTCRKDYSVAWMKERIFAEVIPTCEKCNGLVKP 172 (494)
Q Consensus 136 ~~~C~~C~~~~~~~~~~~~i~~~~~P~C~~Cgg~lrP 172 (494)
...|.+|+..|+.............-.||.||+.+.+
T Consensus 99 ~Y~Cp~C~~~y~~~ea~~~~d~~~~f~Cp~Cg~~l~~ 135 (147)
T smart00531 99 YYKCPNCQSKYTFLEANQLLDMDGTFTCPRCGEELEE 135 (147)
T ss_pred EEECcCCCCEeeHHHHHHhcCCCCcEECCCCCCEEEE
Confidence 4579999999886543322111223689999998765
No 53
>COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only]
Probab=72.52 E-value=1.7 Score=39.93 Aligned_cols=67 Identities=13% Similarity=0.214 Sum_probs=43.5
Q ss_pred CCccEEEeccccchHHhcCCCCCCEEEecCCcCccccCCCCcccchHHHHHHHhhcCCCCCCCCCCeee
Q psy11832 103 NLLLRHFTQNIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDYSVAWMKERIFAEVIPTCEKCNGLVK 171 (494)
Q Consensus 103 ~~~~~iiTQNIDgLh~kAG~~~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~i~~~~~P~C~~Cgg~lr 171 (494)
|+++..+-+.|+||--..-. ...+--+-|+-+..+|. |+..|....-...+....+-+|.+|+|.|.
T Consensus 85 g~ewk~lm~qV~~l~~~~~h-~~~~~~v~~~~~~Y~C~-C~q~~l~~RRhn~~~~g~~YrC~~C~gkL~ 151 (156)
T COG3091 85 GKEWKLLMQQVLGLRFCRTH-QFEVQSVRRTTYPYRCQ-CQQHYLRIRRHNTVRRGEVYRCGKCGGKLV 151 (156)
T ss_pred chhHHHHHHHhCCCCCCccc-hHHHhhccccceeEEee-cCCccchhhhcccccccceEEeccCCceEE
Confidence 55566677888888655532 13444556788899999 998764332222233334689999999865
No 54
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=72.13 E-value=1.9 Score=31.92 Aligned_cols=32 Identities=16% Similarity=0.267 Sum_probs=21.5
Q ss_pred cceeecCCCCCccchHHHHhhhccCCCCCCccCCCCC
Q psy11832 278 FHTSHCLTCRKDYSVAWMKEGNLLGRMGITLGLHAGG 314 (494)
Q Consensus 278 ~~~~~C~~C~~~y~~~~~~~~i~~~~~~~p~c~~C~g 314 (494)
++..+|.+|++.|+.... + .+ .....||.|++
T Consensus 3 ~Yey~C~~Cg~~fe~~~~---~-~~-~~~~~CP~Cg~ 34 (52)
T TIGR02605 3 IYEYRCTACGHRFEVLQK---M-SD-DPLATCPECGG 34 (52)
T ss_pred CEEEEeCCCCCEeEEEEe---c-CC-CCCCCCCCCCC
Confidence 356789999998875421 1 11 23467999997
No 55
>PF09845 DUF2072: Zn-ribbon containing protein (DUF2072); InterPro: IPR018645 This archaeal Zinc-ribbon containing proteins have no known function.
Probab=71.97 E-value=2 Score=38.50 Aligned_cols=26 Identities=19% Similarity=0.292 Sum_probs=18.4
Q ss_pred ecCCCCCccchHHHHhhhccCCCCCCccCCCCCC
Q psy11832 282 HCLTCRKDYSVAWMKEGNLLGRMGITLGLHAGGL 315 (494)
Q Consensus 282 ~C~~C~~~y~~~~~~~~i~~~~~~~p~c~~C~g~ 315 (494)
+|++||+.|+..... |+. -||.|||-
T Consensus 3 ~Ct~Cg~~f~dgs~e--il~------GCP~CGg~ 28 (131)
T PF09845_consen 3 QCTKCGRVFEDGSKE--ILS------GCPECGGN 28 (131)
T ss_pred ccCcCCCCcCCCcHH--HHc------cCcccCCc
Confidence 699999999754322 332 38999985
No 56
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=71.13 E-value=3.7 Score=38.09 Aligned_cols=32 Identities=16% Similarity=0.299 Sum_probs=24.7
Q ss_pred CccccCCCCcccchHHHHHHHhhcCCCCCCCCCCeee
Q psy11832 135 HTSHCLTCRKDYSVAWMKERIFAEVIPTCEKCNGLVK 171 (494)
Q Consensus 135 ~~~~C~~C~~~~~~~~~~~~i~~~~~P~C~~Cgg~lr 171 (494)
....|..|+.+|+.+...+ ..-.||.||+.|.
T Consensus 108 ~~Y~Cp~c~~r~tf~eA~~-----~~F~Cp~Cg~~L~ 139 (158)
T TIGR00373 108 MFFICPNMCVRFTFNEAME-----LNFTCPRCGAMLD 139 (158)
T ss_pred CeEECCCCCcEeeHHHHHH-----cCCcCCCCCCEee
Confidence 4567999999998775543 3678999999854
No 57
>PF14353 CpXC: CpXC protein
Probab=69.12 E-value=3.6 Score=36.47 Aligned_cols=35 Identities=20% Similarity=0.245 Sum_probs=27.3
Q ss_pred eecCCCCCccch-----------HHHHhhhccCCCCCCccCCCCCC
Q psy11832 281 SHCLTCRKDYSV-----------AWMKEGNLLGRMGITLGLHAGGL 315 (494)
Q Consensus 281 ~~C~~C~~~y~~-----------~~~~~~i~~~~~~~p~c~~C~g~ 315 (494)
.+|+.|++++.. ..++++|+.+..-.-.||+||..
T Consensus 2 itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~ 47 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHK 47 (128)
T ss_pred cCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCc
Confidence 579999998742 36788888777767789999875
No 58
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=68.01 E-value=3.2 Score=38.07 Aligned_cols=30 Identities=13% Similarity=0.161 Sum_probs=21.9
Q ss_pred cceeecCCCCCccchHHHHhhhccCCCCCCccCCCCCC
Q psy11832 278 FHTSHCLTCRKDYSVAWMKEGNLLGRMGITLGLHAGGL 315 (494)
Q Consensus 278 ~~~~~C~~C~~~y~~~~~~~~i~~~~~~~p~c~~C~g~ 315 (494)
.-+..|.+||+...+.. ...+|.||.|++-
T Consensus 110 ~G~l~C~~Cg~~~~~~~--------~~~l~~Cp~C~~~ 139 (146)
T PF07295_consen 110 PGTLVCENCGHEVELTH--------PERLPPCPKCGHT 139 (146)
T ss_pred CceEecccCCCEEEecC--------CCcCCCCCCCCCC
Confidence 34678999999876542 2346889999985
No 59
>COG1379 PHP family phosphoesterase with a Zn ribbon [General function prediction only]
Probab=67.26 E-value=1.7 Score=44.65 Aligned_cols=40 Identities=30% Similarity=0.645 Sum_probs=31.1
Q ss_pred ecCCcCccccCCCCcccchHHHHHHHhhcCCCCCCCCCCeeeeeE
Q psy11832 130 AHGSFHTSHCLTCRKDYSVAWMKERIFAEVIPTCEKCNGLVKPDI 174 (494)
Q Consensus 130 lHG~~~~~~C~~C~~~~~~~~~~~~i~~~~~P~C~~Cgg~lrP~V 174 (494)
--|-++..-|+.|..+|..+... ..--+||+|||.++-.|
T Consensus 240 ~LGKY~~TAC~rC~t~y~le~A~-----~~~wrCpkCGg~ikKGV 279 (403)
T COG1379 240 RLGKYHLTACSRCYTRYSLEEAK-----SLRWRCPKCGGKIKKGV 279 (403)
T ss_pred cccchhHHHHHHhhhccCcchhh-----hhcccCcccccchhhhH
Confidence 35788899999999999866443 23468999999887766
No 60
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=66.97 E-value=4.3 Score=38.44 Aligned_cols=33 Identities=15% Similarity=0.364 Sum_probs=25.8
Q ss_pred CccccCCCCcccchHHHHHHHhhcCCCCCCCCCCeeee
Q psy11832 135 HTSHCLTCRKDYSVAWMKERIFAEVIPTCEKCNGLVKP 172 (494)
Q Consensus 135 ~~~~C~~C~~~~~~~~~~~~i~~~~~P~C~~Cgg~lrP 172 (494)
....|..|+..|+.+...+ ..-.||.||+.|..
T Consensus 116 ~~Y~Cp~C~~rytf~eA~~-----~~F~Cp~Cg~~L~~ 148 (178)
T PRK06266 116 MFFFCPNCHIRFTFDEAME-----YGFRCPQCGEMLEE 148 (178)
T ss_pred CEEECCCCCcEEeHHHHhh-----cCCcCCCCCCCCee
Confidence 4567999999998775432 46799999998876
No 61
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=66.59 E-value=12 Score=41.13 Aligned_cols=42 Identities=17% Similarity=0.272 Sum_probs=25.6
Q ss_pred HHHHHHhHcCCCCeEEEeCcCCChhhhhhhhhhhhhcCCCceEEE-Eecccc
Q psy11832 185 YFHRVDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPKADLLL-IMGTSL 235 (494)
Q Consensus 185 ~~~~a~~~~~~aDlllvvGTSl~V~pa~~lv~~~~~~~~~a~lv~-IN~~p~ 235 (494)
.++...+.+.+-+.=|+|||.+. .+- +++|+..+|. +|.+..
T Consensus 300 ~~~~~l~~f~~g~~~ILVgT~~i-------~kG--~d~~~v~lV~vl~aD~~ 342 (505)
T TIGR00595 300 AHEALLNQFANGKADILIGTQMI-------AKG--HHFPNVTLVGVLDADSG 342 (505)
T ss_pred HHHHHHHHHhcCCCCEEEeCccc-------ccC--CCCCcccEEEEEcCccc
Confidence 34556666666666778999873 122 2677777664 566543
No 62
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=66.56 E-value=2.8 Score=35.86 Aligned_cols=27 Identities=19% Similarity=0.194 Sum_probs=18.3
Q ss_pred eecCCCCCccchHHHHhhhccCCCCCCccCCCCCC
Q psy11832 281 SHCLTCRKDYSVAWMKEGNLLGRMGITLGLHAGGL 315 (494)
Q Consensus 281 ~~C~~C~~~y~~~~~~~~i~~~~~~~p~c~~C~g~ 315 (494)
.+|++||+.|+.-. +.|+. -||.||+-
T Consensus 3 H~CtrCG~vf~~g~--~~il~------GCp~CG~n 29 (112)
T COG3364 3 HQCTRCGEVFDDGS--EEILS------GCPKCGCN 29 (112)
T ss_pred ceeccccccccccc--HHHHc------cCccccch
Confidence 36999999998642 22332 38889874
No 63
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=65.62 E-value=3.5 Score=27.83 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=17.9
Q ss_pred cccCCCCcccchHHHHHHHhhcCCCCCCCCCC
Q psy11832 137 SHCLTCRKDYSVAWMKERIFAEVIPTCEKCNG 168 (494)
Q Consensus 137 ~~C~~C~~~~~~~~~~~~i~~~~~P~C~~Cgg 168 (494)
.+|..|++.|+.+. ...+||.||.
T Consensus 2 ~~C~~CGy~y~~~~--------~~~~CP~Cg~ 25 (33)
T cd00350 2 YVCPVCGYIYDGEE--------APWVCPVCGA 25 (33)
T ss_pred EECCCCCCEECCCc--------CCCcCcCCCC
Confidence 57999999875432 3458999986
No 64
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=64.94 E-value=3.5 Score=29.88 Aligned_cols=29 Identities=14% Similarity=0.314 Sum_probs=19.9
Q ss_pred CccccCCCCcccchHHHHHHHhhcCCCCCCCCCCe
Q psy11832 135 HTSHCLTCRKDYSVAWMKERIFAEVIPTCEKCNGL 169 (494)
Q Consensus 135 ~~~~C~~C~~~~~~~~~~~~i~~~~~P~C~~Cgg~ 169 (494)
...+|.+|+..+..+.. ....+||.||+.
T Consensus 2 ~~y~C~~CG~~~~~~~~------~~~~~Cp~CG~~ 30 (46)
T PRK00398 2 AEYKCARCGREVELDEY------GTGVRCPYCGYR 30 (46)
T ss_pred CEEECCCCCCEEEECCC------CCceECCCCCCe
Confidence 35689999998654321 125689999975
No 65
>PRK06260 threonine synthase; Validated
Probab=64.57 E-value=4.7 Score=42.85 Aligned_cols=31 Identities=32% Similarity=0.687 Sum_probs=23.3
Q ss_pred CccccCCCCcccchHHHHHHHhhcCCCCCCCCCCeeeee
Q psy11832 135 HTSHCLTCRKDYSVAWMKERIFAEVIPTCEKCNGLVKPD 173 (494)
Q Consensus 135 ~~~~C~~C~~~~~~~~~~~~i~~~~~P~C~~Cgg~lrP~ 173 (494)
..++|..|++.|+.+. ...+||.||+.+...
T Consensus 2 ~~~~C~~cg~~~~~~~--------~~~~Cp~cg~~l~~~ 32 (397)
T PRK06260 2 YWLKCIECGKEYDPDE--------IIYTCPECGGLLEVI 32 (397)
T ss_pred CEEEECCCCCCCCCCC--------ccccCCCCCCeEEEE
Confidence 4689999999986432 246899999987654
No 66
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=64.39 E-value=2.8 Score=28.93 Aligned_cols=34 Identities=18% Similarity=0.370 Sum_probs=22.2
Q ss_pred ccccCCCCcccchHHHHHHHh-hcCCCCCCCCCCeee
Q psy11832 136 TSHCLTCRKDYSVAWMKERIF-AEVIPTCEKCNGLVK 171 (494)
Q Consensus 136 ~~~C~~C~~~~~~~~~~~~i~-~~~~P~C~~Cgg~lr 171 (494)
...|.+|+..|..+... +. .....+||+|+..+.
T Consensus 2 ~~~CP~C~~~~~v~~~~--~~~~~~~v~C~~C~~~~~ 36 (38)
T TIGR02098 2 RIQCPNCKTSFRVVDSQ--LGANGGKVRCGKCGHVWY 36 (38)
T ss_pred EEECCCCCCEEEeCHHH--cCCCCCEEECCCCCCEEE
Confidence 36799999987654321 21 123568999998754
No 67
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=63.90 E-value=7.4 Score=38.58 Aligned_cols=41 Identities=17% Similarity=0.354 Sum_probs=28.4
Q ss_pred CEEEecCCcCccccCCCCcccchHHHHHHHhhcCCCCCCCCCCee
Q psy11832 126 KLVEAHGSFHTSHCLTCRKDYSVAWMKERIFAEVIPTCEKCNGLV 170 (494)
Q Consensus 126 ~v~elHG~~~~~~C~~C~~~~~~~~~~~~i~~~~~P~C~~Cgg~l 170 (494)
-|+.+.|.. |..|+-..+......-.....++.||.||..+
T Consensus 191 gvvpl~g~~----C~GC~m~l~~~~~~~V~~~d~iv~CP~CgRIL 231 (239)
T COG1579 191 GVVPLEGRV----CGGCHMKLPSQTLSKVRKKDEIVFCPYCGRIL 231 (239)
T ss_pred eEEeecCCc----ccCCeeeecHHHHHHHhcCCCCccCCccchHH
Confidence 566666665 99999987654433333355799999999753
No 68
>PRK12496 hypothetical protein; Provisional
Probab=63.71 E-value=2 Score=40.16 Aligned_cols=54 Identities=24% Similarity=0.498 Sum_probs=31.9
Q ss_pred EEEec--cccchHHhcCCCCCCEEEecCC-----c-CccccCCCCcccchHHHHHHHhhcCCCCCCCCCCeee
Q psy11832 107 RHFTQ--NIDNLERIAGLPDDKLVEAHGS-----F-HTSHCLTCRKDYSVAWMKERIFAEVIPTCEKCNGLVK 171 (494)
Q Consensus 107 ~iiTQ--NIDgLh~kAG~~~~~v~elHG~-----~-~~~~C~~C~~~~~~~~~~~~i~~~~~P~C~~Cgg~lr 171 (494)
.++|. |+-..-..-|+ ++.-+|+. . +..+|..|++.|+.++ ..-.||.||.+++
T Consensus 93 ~lvtDD~~~~~vA~~lgi---~v~~~~~~~i~~~~~w~~~C~gC~~~~~~~~--------~~~~C~~CG~~~~ 154 (164)
T PRK12496 93 TLYTDDYGIQNVAKKLNI---KFENIKTKGIKKVIKWRKVCKGCKKKYPEDY--------PDDVCEICGSPVK 154 (164)
T ss_pred cEECcHHHHHHHHHHcCC---eEeccccccchhheeeeEECCCCCccccCCC--------CCCcCCCCCChhh
Confidence 45653 33333444565 56666622 2 2467999999885321 1235999998754
No 69
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=63.22 E-value=5.2 Score=37.08 Aligned_cols=30 Identities=10% Similarity=-0.045 Sum_probs=23.2
Q ss_pred ceeecCCCCCccchHHHHhhhccCCCCCCccCCCCCC
Q psy11832 279 HTSHCLTCRKDYSVAWMKEGNLLGRMGITLGLHAGGL 315 (494)
Q Consensus 279 ~~~~C~~C~~~y~~~~~~~~i~~~~~~~p~c~~C~g~ 315 (494)
.--.|+.|+.+|+.++..+. --.||.||+.
T Consensus 108 ~~Y~Cp~c~~r~tf~eA~~~-------~F~Cp~Cg~~ 137 (158)
T TIGR00373 108 MFFICPNMCVRFTFNEAMEL-------NFTCPRCGAM 137 (158)
T ss_pred CeEECCCCCcEeeHHHHHHc-------CCcCCCCCCE
Confidence 44679999999998876543 2579999984
No 70
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=63.19 E-value=5 Score=37.97 Aligned_cols=29 Identities=14% Similarity=0.129 Sum_probs=22.5
Q ss_pred eeecCCCCCccchHHHHhhhccCCCCCCccCCCCCC
Q psy11832 280 TSHCLTCRKDYSVAWMKEGNLLGRMGITLGLHAGGL 315 (494)
Q Consensus 280 ~~~C~~C~~~y~~~~~~~~i~~~~~~~p~c~~C~g~ 315 (494)
.-.|+.|+++|+.++..+. --.||.||+.
T Consensus 117 ~Y~Cp~C~~rytf~eA~~~-------~F~Cp~Cg~~ 145 (178)
T PRK06266 117 FFFCPNCHIRFTFDEAMEY-------GFRCPQCGEM 145 (178)
T ss_pred EEECCCCCcEEeHHHHhhc-------CCcCCCCCCC
Confidence 4679999999998875432 2579999995
No 71
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=60.64 E-value=3.9 Score=35.71 Aligned_cols=34 Identities=12% Similarity=0.212 Sum_probs=21.9
Q ss_pred eeccCccceeecCCCCCccchHHHHhhhccCCCCCCccCCCCCC
Q psy11832 272 VEAHGSFHTSHCLTCRKDYSVAWMKEGNLLGRMGITLGLHAGGL 315 (494)
Q Consensus 272 vE~HGs~~~~~C~~C~~~y~~~~~~~~i~~~~~~~p~c~~C~g~ 315 (494)
+++.=.-.+.+|..|++.|+.+... -.||.|++.
T Consensus 62 L~Ie~~p~~~~C~~Cg~~~~~~~~~----------~~CP~Cgs~ 95 (113)
T PF01155_consen 62 LEIEEVPARARCRDCGHEFEPDEFD----------FSCPRCGSP 95 (113)
T ss_dssp EEEEEE--EEEETTTS-EEECHHCC----------HH-SSSSSS
T ss_pred EEEEecCCcEECCCCCCEEecCCCC----------CCCcCCcCC
Confidence 4444445678999999999887643 249999984
No 72
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=60.58 E-value=16 Score=41.98 Aligned_cols=16 Identities=25% Similarity=0.306 Sum_probs=11.1
Q ss_pred cCCCceEEEEeccccc
Q psy11832 221 DFPKADLLLIMGTSLV 236 (494)
Q Consensus 221 ~~~~a~lv~IN~~p~~ 236 (494)
.+|+++++++..+.+.
T Consensus 503 ~FP~~rv~r~d~Dtt~ 518 (730)
T COG1198 503 LFPGARIIRIDSDTTR 518 (730)
T ss_pred HCCCCcEEEEcccccc
Confidence 3677777777766665
No 73
>PRK14873 primosome assembly protein PriA; Provisional
Probab=60.46 E-value=14 Score=42.01 Aligned_cols=14 Identities=14% Similarity=0.356 Sum_probs=9.5
Q ss_pred CCCCCCCCCe-eeee
Q psy11832 160 IPTCEKCNGL-VKPD 173 (494)
Q Consensus 160 ~P~C~~Cgg~-lrP~ 173 (494)
..+||+||+. +++-
T Consensus 422 p~~Cp~Cgs~~l~~~ 436 (665)
T PRK14873 422 DWRCPRCGSDRLRAV 436 (665)
T ss_pred CccCCCCcCCcceee
Confidence 4579999974 4443
No 74
>PRK05580 primosome assembly protein PriA; Validated
Probab=60.13 E-value=19 Score=41.18 Aligned_cols=40 Identities=18% Similarity=0.417 Sum_probs=23.7
Q ss_pred HHHHHHhHcCCCCeEEEeCcCCChhhhhhhhhhhhhcCCCceEEE-Eecc
Q psy11832 185 YFHRVDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPKADLLL-IMGT 233 (494)
Q Consensus 185 ~~~~a~~~~~~aDlllvvGTSl~V~pa~~lv~~~~~~~~~a~lv~-IN~~ 233 (494)
..+.+.+.+.+-+.=|+|||.+. .+- .++|+..+|. +|.+
T Consensus 468 ~~~~~l~~f~~g~~~ILVgT~~i-------akG--~d~p~v~lV~il~aD 508 (679)
T PRK05580 468 ALEQLLAQFARGEADILIGTQML-------AKG--HDFPNVTLVGVLDAD 508 (679)
T ss_pred hHHHHHHHHhcCCCCEEEEChhh-------ccC--CCCCCcCEEEEEcCc
Confidence 34555566666666677999862 111 2567777665 4544
No 75
>COG2331 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.83 E-value=2.9 Score=33.89 Aligned_cols=41 Identities=27% Similarity=0.645 Sum_probs=27.3
Q ss_pred CccccCCCCcccchHHHHHHHhhcCCCCCCCCCCeee-----eeEEecC
Q psy11832 135 HTSHCLTCRKDYSVAWMKERIFAEVIPTCEKCNGLVK-----PDIVFFG 178 (494)
Q Consensus 135 ~~~~C~~C~~~~~~~~~~~~i~~~~~P~C~~Cgg~lr-----P~Vv~Fg 178 (494)
....|..|+..++ +...+.....-.||.||+.+| +.|+|=|
T Consensus 11 Y~Y~c~~cg~~~d---vvq~~~ddplt~ce~c~a~~kk~l~~vgi~fKG 56 (82)
T COG2331 11 YSYECTECGNRFD---VVQAMTDDPLTTCEECGARLKKLLNAVGIVFKG 56 (82)
T ss_pred eEEeecccchHHH---HHHhcccCccccChhhChHHHHhhccceEEEec
Confidence 3568999998864 334454455667999998654 5555544
No 76
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=59.17 E-value=6.4 Score=26.88 Aligned_cols=26 Identities=15% Similarity=0.194 Sum_probs=18.4
Q ss_pred ccccCCCCcccchHHHHHHHhhcCCCCCCCCCCe
Q psy11832 136 TSHCLTCRKDYSVAWMKERIFAEVIPTCEKCNGL 169 (494)
Q Consensus 136 ~~~C~~C~~~~~~~~~~~~i~~~~~P~C~~Cgg~ 169 (494)
..+|..|++.+..+. ....||.||..
T Consensus 2 ~~~C~~CG~i~~g~~--------~p~~CP~Cg~~ 27 (34)
T cd00729 2 VWVCPVCGYIHEGEE--------APEKCPICGAP 27 (34)
T ss_pred eEECCCCCCEeECCc--------CCCcCcCCCCc
Confidence 468999999865321 23489999863
No 77
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=58.70 E-value=6.2 Score=25.38 Aligned_cols=21 Identities=19% Similarity=0.373 Sum_probs=14.9
Q ss_pred ecCCCCCccchHHHHhhhccCCCCCCccCCCCC
Q psy11832 282 HCLTCRKDYSVAWMKEGNLLGRMGITLGLHAGG 314 (494)
Q Consensus 282 ~C~~C~~~y~~~~~~~~i~~~~~~~p~c~~C~g 314 (494)
+|.+|++.++... -.||+||-
T Consensus 2 ~CP~C~~~V~~~~------------~~Cp~CG~ 22 (26)
T PF10571_consen 2 TCPECGAEVPESA------------KFCPHCGY 22 (26)
T ss_pred cCCCCcCCchhhc------------CcCCCCCC
Confidence 5899999875443 35788874
No 78
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=57.92 E-value=12 Score=41.33 Aligned_cols=60 Identities=10% Similarity=0.059 Sum_probs=37.7
Q ss_pred ecCCCCChHHHHHHHhHcCCCCeEEEeCcCCChhhhhhhhhhhhhcCCCceEEEEeccccccc
Q psy11832 176 FFGENLPSRYFHRVDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPKADLLLIMGTSLVVQ 238 (494)
Q Consensus 176 ~FgE~~~~~~~~~a~~~~~~aDlllvvGTSl~V~pa~~lv~~~~~~~~~a~lv~IN~~p~~~h 238 (494)
.|.|.+|-..-..+.+.+++||++|++||++.-++.......+ .+++++|.|+.+|....
T Consensus 246 ~~p~~hp~~~g~~~~~~~~~aDlvl~lG~~~~~~~~~~~~~~~---~~~~~vI~id~d~~~~~ 305 (554)
T TIGR03254 246 LLPDTHPQSAAAARSFALAEADVVMLVGARLNWLLSHGKGKLW---GEDAKFIQVDIEPTEMD 305 (554)
T ss_pred eCCCCCchhhhHHHHHHHhcCCEEEEECCCCchhhccCchhhc---CCCCcEEEcCCCHHHhC
Confidence 4555555432233445788999999999998755433221122 25678888988877654
No 79
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=57.91 E-value=24 Score=40.65 Aligned_cols=24 Identities=13% Similarity=0.050 Sum_probs=16.3
Q ss_pred ceeecCCCCCccchHHHHhhhccCCCCCCccCCCCCC
Q psy11832 279 HTSHCLTCRKDYSVAWMKEGNLLGRMGITLGLHAGGL 315 (494)
Q Consensus 279 ~~~~C~~C~~~y~~~~~~~~i~~~~~~~p~c~~C~g~ 315 (494)
....|-.||+..+ .+-.||.|++.
T Consensus 461 ~~L~CH~Cg~~~~-------------~p~~Cp~Cgs~ 484 (730)
T COG1198 461 GQLRCHYCGYQEP-------------IPQSCPECGSE 484 (730)
T ss_pred CeeEeCCCCCCCC-------------CCCCCCCCCCC
Confidence 4578889998532 23458999874
No 80
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=57.24 E-value=4.6 Score=30.09 Aligned_cols=27 Identities=11% Similarity=0.132 Sum_probs=18.3
Q ss_pred eecCCCCCccchHHHHhhhccCCCCCCccCCCCCC
Q psy11832 281 SHCLTCRKDYSVAWMKEGNLLGRMGITLGLHAGGL 315 (494)
Q Consensus 281 ~~C~~C~~~y~~~~~~~~i~~~~~~~p~c~~C~g~ 315 (494)
-.|.+||+++++... .+.-.||.|+.-
T Consensus 7 Y~C~~Cg~~~~~~~~--------~~~irCp~Cg~r 33 (49)
T COG1996 7 YKCARCGREVELDQE--------TRGIRCPYCGSR 33 (49)
T ss_pred EEhhhcCCeeehhhc--------cCceeCCCCCcE
Confidence 469999999843321 123469999973
No 81
>PRK11032 hypothetical protein; Provisional
Probab=57.12 E-value=7.1 Score=36.36 Aligned_cols=30 Identities=13% Similarity=0.148 Sum_probs=21.6
Q ss_pred cceeecCCCCCccchHHHHhhhccCCCCCCccCCCCCC
Q psy11832 278 FHTSHCLTCRKDYSVAWMKEGNLLGRMGITLGLHAGGL 315 (494)
Q Consensus 278 ~~~~~C~~C~~~y~~~~~~~~i~~~~~~~p~c~~C~g~ 315 (494)
+-+..|.+||+...... ...+|.||.|++-
T Consensus 122 ~G~LvC~~Cg~~~~~~~--------p~~i~pCp~C~~~ 151 (160)
T PRK11032 122 LGNLVCEKCHHHLAFYT--------PEVLPLCPKCGHD 151 (160)
T ss_pred cceEEecCCCCEEEecC--------CCcCCCCCCCCCC
Confidence 34578999999865432 2346889999985
No 82
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=56.61 E-value=8.5 Score=26.61 Aligned_cols=32 Identities=16% Similarity=0.165 Sum_probs=20.8
Q ss_pred eeecCCCCCccchHHHHhhhccCCCCCCccCCCCC
Q psy11832 280 TSHCLTCRKDYSVAWMKEGNLLGRMGITLGLHAGG 314 (494)
Q Consensus 280 ~~~C~~C~~~y~~~~~~~~i~~~~~~~p~c~~C~g 314 (494)
...|.+|+++|.+++-+ |.. ....-+|+.|+-
T Consensus 2 ~i~Cp~C~~~y~i~d~~--ip~-~g~~v~C~~C~~ 33 (36)
T PF13717_consen 2 IITCPNCQAKYEIDDEK--IPP-KGRKVRCSKCGH 33 (36)
T ss_pred EEECCCCCCEEeCCHHH--CCC-CCcEEECCCCCC
Confidence 35799999999887633 322 222346788874
No 83
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=55.01 E-value=11 Score=41.90 Aligned_cols=47 Identities=17% Similarity=0.223 Sum_probs=34.5
Q ss_pred HHHhHcCCCCeEEEeCcCCChhhhhhhhhhhhhcCCCceEEEEeccccccc
Q psy11832 188 RVDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPKADLLLIMGTSLVVQ 238 (494)
Q Consensus 188 ~a~~~~~~aDlllvvGTSl~V~pa~~lv~~~~~~~~~a~lv~IN~~p~~~h 238 (494)
.+.+.+++||++|+|||++.......+... .+++++|.|+.+|....
T Consensus 265 ~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~----~~~~~~I~id~d~~~~~ 311 (574)
T PRK06882 265 EANNAMHESDLILGIGVRFDDRTTNNLAKY----CPNAKVIHIDIDPTSIS 311 (574)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCchhhc----CCCCeEEEEECCHHHhc
Confidence 445577899999999999877765444332 36678999998887653
No 84
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=54.58 E-value=11 Score=41.89 Aligned_cols=48 Identities=19% Similarity=0.214 Sum_probs=34.6
Q ss_pred HHHHhHcCCCCeEEEeCcCCChhhhhhhhhhhhhcCCCceEEEEeccccccc
Q psy11832 187 HRVDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPKADLLLIMGTSLVVQ 238 (494)
Q Consensus 187 ~~a~~~~~~aDlllvvGTSl~V~pa~~lv~~~~~~~~~a~lv~IN~~p~~~h 238 (494)
..+.+.+++||++|+|||++.......+... .++.++|.|+.+|....
T Consensus 264 ~~~~~~~~~aD~vl~vG~~~~~~~~~~~~~~----~~~~~~i~id~d~~~i~ 311 (572)
T PRK08979 264 YEANMAMHNADLIFGIGVRFDDRTTNNLEKY----CPNATILHIDIDPSSIS 311 (572)
T ss_pred HHHHHHHHhCCEEEEEcCCCCccccCchhhc----CCCCeEEEEECCHHHhC
Confidence 3455677899999999999877654443222 36678999998887653
No 85
>PRK07591 threonine synthase; Validated
Probab=54.38 E-value=8.3 Score=41.39 Aligned_cols=31 Identities=26% Similarity=0.627 Sum_probs=23.6
Q ss_pred cCccccCCCCcccchHHHHHHHhhcCCCCCCCCCCeeeee
Q psy11832 134 FHTSHCLTCRKDYSVAWMKERIFAEVIPTCEKCNGLVKPD 173 (494)
Q Consensus 134 ~~~~~C~~C~~~~~~~~~~~~i~~~~~P~C~~Cgg~lrP~ 173 (494)
+..++|..|++.|+.+ ...+||.||+++...
T Consensus 16 ~~~l~C~~Cg~~~~~~---------~~~~C~~cg~~l~~~ 46 (421)
T PRK07591 16 AVALKCRECGAEYPLG---------PIHVCEECFGPLEVA 46 (421)
T ss_pred eeEEEeCCCCCcCCCC---------CCccCCCCCCeEEEE
Confidence 3458999999998643 126899999988754
No 86
>TIGR00354 polC DNA polymerase, archaeal type II, large subunit. This model represents the large subunit, DP2, of a two subunit novel Archaeal replicative DNA polymerase first characterized for Pyrococcus furiosus. Structure of DP2 appears to be organized as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit.
Probab=53.86 E-value=8.5 Score=44.89 Aligned_cols=38 Identities=18% Similarity=0.559 Sum_probs=29.0
Q ss_pred EecCCcC-----ccccCCCCcccchHHHHHHHhhcCCCCCCCCCCeeeeeE
Q psy11832 129 EAHGSFH-----TSHCLTCRKDYSVAWMKERIFAEVIPTCEKCNGLVKPDI 174 (494)
Q Consensus 129 elHG~~~-----~~~C~~C~~~~~~~~~~~~i~~~~~P~C~~Cgg~lrP~V 174 (494)
.|-||++ .++|++|+..|... ...-+|++|||.+-++|
T Consensus 1000 Dl~GNLRaFsrQ~fRC~kC~~kYRR~--------PL~G~C~kCGg~lilTV 1042 (1095)
T TIGR00354 1000 DIIGNLRAFSRQEVRCTKCNTKYRRI--------PLVGKCLKCGNNLTLTV 1042 (1095)
T ss_pred HhhhhHhhhhccceeecccCCccccC--------CCCCcccccCCeEEEEE
Confidence 5668886 45999999988532 23457999999888877
No 87
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=53.08 E-value=12 Score=41.54 Aligned_cols=47 Identities=17% Similarity=0.253 Sum_probs=34.1
Q ss_pred HHHhHcCCCCeEEEeCcCCChhhhhhhhhhhhhcCCCceEEEEeccccccc
Q psy11832 188 RVDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPKADLLLIMGTSLVVQ 238 (494)
Q Consensus 188 ~a~~~~~~aDlllvvGTSl~V~pa~~lv~~~~~~~~~a~lv~IN~~p~~~h 238 (494)
.+.+.+++||++|+|||++.......+... .+++++|.|+.+|....
T Consensus 265 ~~~~~l~~aDlvl~vG~~~~~~~~~~~~~~----~~~~~~i~id~d~~~i~ 311 (574)
T PRK07979 265 EANMTMHNADVIFAVGVRFDDRTTNNLAKY----CPNATVLHIDIDPTSIS 311 (574)
T ss_pred HHHHHHHhCCEEEEeCCCCcccccCChhhc----CCCCeEEEEECCHHHhC
Confidence 455677899999999999877654333222 35678999998887753
No 88
>PRK06260 threonine synthase; Validated
Probab=52.42 E-value=8.3 Score=40.95 Aligned_cols=28 Identities=29% Similarity=0.525 Sum_probs=20.5
Q ss_pred cceeecCCCCCccchHHHHhhhccCCCCCCccCCCCCC
Q psy11832 278 FHTSHCLTCRKDYSVAWMKEGNLLGRMGITLGLHAGGL 315 (494)
Q Consensus 278 ~~~~~C~~C~~~y~~~~~~~~i~~~~~~~p~c~~C~g~ 315 (494)
+++..|++||++|+.+.. ...||.|++.
T Consensus 1 ~~~~~C~~cg~~~~~~~~----------~~~Cp~cg~~ 28 (397)
T PRK06260 1 MYWLKCIECGKEYDPDEI----------IYTCPECGGL 28 (397)
T ss_pred CCEEEECCCCCCCCCCCc----------cccCCCCCCe
Confidence 356899999999976542 2458889874
No 89
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=52.40 E-value=9.3 Score=26.50 Aligned_cols=32 Identities=16% Similarity=0.097 Sum_probs=20.5
Q ss_pred eeecCCCCCccchHHHHhhhccCCCCCCccCCCCC
Q psy11832 280 TSHCLTCRKDYSVAWMKEGNLLGRMGITLGLHAGG 314 (494)
Q Consensus 280 ~~~C~~C~~~y~~~~~~~~i~~~~~~~p~c~~C~g 314 (494)
..+|++|+..|.++.-+ +.. ....-+|++|+-
T Consensus 2 ~i~CP~C~~~f~v~~~~--l~~-~~~~vrC~~C~~ 33 (37)
T PF13719_consen 2 IITCPNCQTRFRVPDDK--LPA-GGRKVRCPKCGH 33 (37)
T ss_pred EEECCCCCceEEcCHHH--ccc-CCcEEECCCCCc
Confidence 35899999999877532 221 122346888875
No 90
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=52.37 E-value=8.3 Score=33.92 Aligned_cols=33 Identities=6% Similarity=0.047 Sum_probs=22.2
Q ss_pred ccCccceeecCCCCCccchHHHHhhhccCCCCCCccCCCCCC
Q psy11832 274 AHGSFHTSHCLTCRKDYSVAWMKEGNLLGRMGITLGLHAGGL 315 (494)
Q Consensus 274 ~HGs~~~~~C~~C~~~y~~~~~~~~i~~~~~~~p~c~~C~g~ 315 (494)
+.=--...+|.+|++.++.... ....||.|++.
T Consensus 65 Ie~vp~~~~C~~Cg~~~~~~~~---------~~~~CP~Cgs~ 97 (117)
T PRK00564 65 IVDEKVELECKDCSHVFKPNAL---------DYGVCEKCHSK 97 (117)
T ss_pred EEecCCEEEhhhCCCccccCCc---------cCCcCcCCCCC
Confidence 3333456899999988776532 12459999984
No 91
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=52.12 E-value=13 Score=41.82 Aligned_cols=47 Identities=17% Similarity=0.171 Sum_probs=33.2
Q ss_pred HHHhHcCCCCeEEEeCcCCChhhhhhhhhhhhhcCCCceEEEEeccccccc
Q psy11832 188 RVDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPKADLLLIMGTSLVVQ 238 (494)
Q Consensus 188 ~a~~~~~~aDlllvvGTSl~V~pa~~lv~~~~~~~~~a~lv~IN~~p~~~h 238 (494)
.+.+.+++||++|+|||++.......+.. + .+++++|.|+.+|....
T Consensus 283 ~~~~~l~~aDlvL~vG~~~~~~~~~~~~~-~---~~~~~~i~id~d~~~ig 329 (616)
T PRK07418 283 YANFAVTECDLLIAVGARFDDRVTGKLDE-F---ASRAKVIHIDIDPAEVG 329 (616)
T ss_pred HHHHHHHhCCEEEEEcCCCCccccCChhh-c---CCCCeEEEEeCCHHHhC
Confidence 45567789999999999987554433322 2 35678999998887653
No 92
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=51.36 E-value=8.6 Score=27.91 Aligned_cols=26 Identities=15% Similarity=0.508 Sum_probs=18.8
Q ss_pred cccCCCCcccchHHHHHHHhhcCCCCCCCCCCe
Q psy11832 137 SHCLTCRKDYSVAWMKERIFAEVIPTCEKCNGL 169 (494)
Q Consensus 137 ~~C~~C~~~~~~~~~~~~i~~~~~P~C~~Cgg~ 169 (494)
..|..|+..+..+ ....-+||.||..
T Consensus 3 Y~C~~Cg~~~~~~-------~~~~irC~~CG~r 28 (44)
T smart00659 3 YICGECGRENEIK-------SKDVVRCRECGYR 28 (44)
T ss_pred EECCCCCCEeecC-------CCCceECCCCCce
Confidence 4799999976533 2345689999974
No 93
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=50.99 E-value=19 Score=39.96 Aligned_cols=59 Identities=12% Similarity=0.076 Sum_probs=36.4
Q ss_pred cCCCCChHHHHHHHhHcCCCCeEEEeCcCCChhhhhhhhhhhhhcCCCceEEEEeccccccc
Q psy11832 177 FGENLPSRYFHRVDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPKADLLLIMGTSLVVQ 238 (494)
Q Consensus 177 FgE~~~~~~~~~a~~~~~~aDlllvvGTSl~V~pa~~lv~~~~~~~~~a~lv~IN~~p~~~h 238 (494)
|.|.+|...=..+...+++||++|+||+++.-.+.......+ .+++++|.|+.+|....
T Consensus 254 ~~e~hpl~~G~~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~---~~~~~ii~Id~d~~~~~ 312 (569)
T PRK09259 254 LPDTHPQSAAAARSLALANADVVLLVGARLNWLLSHGKGKTW---GADKKFIQIDIEPQEID 312 (569)
T ss_pred CCCCChhhhhHHHHHHHhcCCEEEEeCCCCchhcccCchhcc---CCCCcEEEecCChHHhc
Confidence 556555432223345688999999999998644322221112 25678888888777643
No 94
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=50.65 E-value=8.1 Score=24.61 Aligned_cols=25 Identities=16% Similarity=0.485 Sum_probs=16.4
Q ss_pred ccccCCCCcccchHHHHHHHhhcCCCCCCCCCCee
Q psy11832 136 TSHCLTCRKDYSVAWMKERIFAEVIPTCEKCNGLV 170 (494)
Q Consensus 136 ~~~C~~C~~~~~~~~~~~~i~~~~~P~C~~Cgg~l 170 (494)
...|.+|++..+. ....||.||..|
T Consensus 2 ~~~Cp~Cg~~~~~----------~~~fC~~CG~~L 26 (26)
T PF13248_consen 2 EMFCPNCGAEIDP----------DAKFCPNCGAKL 26 (26)
T ss_pred cCCCcccCCcCCc----------ccccChhhCCCC
Confidence 4578889885432 234688888654
No 95
>PRK04023 DNA polymerase II large subunit; Validated
Probab=50.27 E-value=11 Score=44.45 Aligned_cols=38 Identities=21% Similarity=0.545 Sum_probs=29.2
Q ss_pred EecCCcC-----ccccCCCCcccchHHHHHHHhhcCCCCCCCCCCeeeeeE
Q psy11832 129 EAHGSFH-----TSHCLTCRKDYSVAWMKERIFAEVIPTCEKCNGLVKPDI 174 (494)
Q Consensus 129 elHG~~~-----~~~C~~C~~~~~~~~~~~~i~~~~~P~C~~Cgg~lrP~V 174 (494)
.|-||++ ..+|.+|+..|... ...-+|++|||.+-++|
T Consensus 1025 Dl~GNLRaFsrQ~fRC~kC~~kYRR~--------PL~G~C~kCGg~lilTV 1067 (1121)
T PRK04023 1025 DLIGNLRAFSRQEFRCTKCGAKYRRP--------PLSGKCPKCGGNLILTV 1067 (1121)
T ss_pred hhhhhhhhhcccceeecccCcccccC--------CCCCcCccCCCeEEEEE
Confidence 4668886 45999999998532 23457999999998887
No 96
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=50.08 E-value=15 Score=40.75 Aligned_cols=47 Identities=13% Similarity=0.203 Sum_probs=33.4
Q ss_pred HHHhHcCCCCeEEEeCcCCChhhhhhhhhhhhhcCCCceEEEEeccccccc
Q psy11832 188 RVDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPKADLLLIMGTSLVVQ 238 (494)
Q Consensus 188 ~a~~~~~~aDlllvvGTSl~V~pa~~lv~~~~~~~~~a~lv~IN~~p~~~h 238 (494)
.+.+.+++||++|+|||++.......+-. + .++.++|.|+.+|....
T Consensus 262 ~~~~~l~~aD~vl~lG~~l~~~~~~~~~~-~---~~~~~~i~id~d~~~~~ 308 (563)
T PRK08527 262 AANMAMSECDLLISLGARFDDRVTGKLSE-F---AKHAKIIHVDIDPSSIS 308 (563)
T ss_pred HHHHHHHhCCEEEEeCCCCCccccCChhh-c---CCCCeEEEEECCHHHhC
Confidence 34456788999999999987655433322 2 35678999998887654
No 97
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=50.06 E-value=6.4 Score=34.65 Aligned_cols=37 Identities=16% Similarity=0.330 Sum_probs=23.7
Q ss_pred CEEEecCCcCccccCCCCcccchHHHHHHHhhcCCCCCCCCCCe
Q psy11832 126 KLVEAHGSFHTSHCLTCRKDYSVAWMKERIFAEVIPTCEKCNGL 169 (494)
Q Consensus 126 ~v~elHG~~~~~~C~~C~~~~~~~~~~~~i~~~~~P~C~~Cgg~ 169 (494)
--++|.=-=-..+|..|+..++... ....+||.||+.
T Consensus 61 a~L~Ie~vp~~~~C~~Cg~~~~~~~-------~~~~~CP~Cgs~ 97 (117)
T PRK00564 61 AILDIVDEKVELECKDCSHVFKPNA-------LDYGVCEKCHSK 97 (117)
T ss_pred CEEEEEecCCEEEhhhCCCccccCC-------ccCCcCcCCCCC
Confidence 3444444445779999998765421 124579999975
No 98
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=50.02 E-value=6.7 Score=35.43 Aligned_cols=15 Identities=20% Similarity=0.649 Sum_probs=11.9
Q ss_pred CccccCCCCcccchH
Q psy11832 135 HTSHCLTCRKDYSVA 149 (494)
Q Consensus 135 ~~~~C~~C~~~~~~~ 149 (494)
...+|..|++.+..+
T Consensus 69 ~~~~C~~CG~~~~~~ 83 (135)
T PRK03824 69 AVLKCRNCGNEWSLK 83 (135)
T ss_pred eEEECCCCCCEEecc
Confidence 467999999887654
No 99
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=49.83 E-value=10 Score=32.97 Aligned_cols=30 Identities=20% Similarity=0.590 Sum_probs=20.7
Q ss_pred ccccCCCCccc-chHHHHHHHhhcCCCCCCCCCCeeeee
Q psy11832 136 TSHCLTCRKDY-SVAWMKERIFAEVIPTCEKCNGLVKPD 173 (494)
Q Consensus 136 ~~~C~~C~~~~-~~~~~~~~i~~~~~P~C~~Cgg~lrP~ 173 (494)
+-.|.+|+.+| +.+ ...-.||.||....|.
T Consensus 9 KR~Cp~CG~kFYDLn--------k~PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 9 KRTCPSCGAKFYDLN--------KDPIVCPKCGTEFPPE 39 (108)
T ss_pred cccCCCCcchhccCC--------CCCccCCCCCCccCcc
Confidence 45799999985 221 2233599999877766
No 100
>PLN02470 acetolactate synthase
Probab=49.56 E-value=16 Score=40.87 Aligned_cols=46 Identities=20% Similarity=0.136 Sum_probs=32.5
Q ss_pred HHHhHcCCCCeEEEeCcCCChhhhhhhhhhhhhcCCCceEEEEecccccc
Q psy11832 188 RVDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPKADLLLIMGTSLVV 237 (494)
Q Consensus 188 ~a~~~~~~aDlllvvGTSl~V~pa~~lv~~~~~~~~~a~lv~IN~~p~~~ 237 (494)
.+.+.+++||++|+|||++.......+... .++.++|.|+.+|...
T Consensus 272 ~~~~~~~~aDlvl~lG~~l~~~~~~~~~~~----~~~~~~I~id~d~~~i 317 (585)
T PLN02470 272 YANYAVDSADLLLAFGVRFDDRVTGKLEAF----ASRASIVHIDIDPAEI 317 (585)
T ss_pred HHHHHHHhCCEEEEECCCCcccccCChhhc----CCCCeEEEEECCHHHh
Confidence 345677899999999999876654333222 3566789999888764
No 101
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=48.53 E-value=16 Score=40.92 Aligned_cols=48 Identities=13% Similarity=0.124 Sum_probs=33.6
Q ss_pred HHHhHcCCCCeEEEeCcCCChhhhhhhhhhhhhcCCCceEEEEecccccccc
Q psy11832 188 RVDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPKADLLLIMGTSLVVQP 239 (494)
Q Consensus 188 ~a~~~~~~aDlllvvGTSl~V~pa~~lv~~~~~~~~~a~lv~IN~~p~~~h~ 239 (494)
.+.+.+++||++|+|||++.......+... .++.++|.|+.+|....+
T Consensus 273 ~~~~~l~~aDlvL~lG~~~~~~~~~~~~~~----~~~~~~I~id~d~~~i~~ 320 (595)
T PRK09107 273 EANMAMHDCDVMLCVGARFDDRITGRLDAF----SPNSKKIHIDIDPSSINK 320 (595)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCchhhc----CCCCeEEEEECCHHHhCC
Confidence 345577899999999999865544333222 366778999988887543
No 102
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=48.00 E-value=8 Score=33.90 Aligned_cols=27 Identities=15% Similarity=0.252 Sum_probs=20.1
Q ss_pred ceeecCCCCCccchHHHHhhhccCCCCCCccCCCCCC
Q psy11832 279 HTSHCLTCRKDYSVAWMKEGNLLGRMGITLGLHAGGL 315 (494)
Q Consensus 279 ~~~~C~~C~~~y~~~~~~~~i~~~~~~~p~c~~C~g~ 315 (494)
...+|.+|++.|+.... .-.||.|++.
T Consensus 69 ~~~~C~~Cg~~~~~~~~----------~~~CP~Cgs~ 95 (115)
T TIGR00100 69 VECECEDCSEEVSPEID----------LYRCPKCHGI 95 (115)
T ss_pred cEEEcccCCCEEecCCc----------CccCcCCcCC
Confidence 45899999998876542 1349999984
No 103
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=47.74 E-value=12 Score=45.07 Aligned_cols=38 Identities=24% Similarity=0.622 Sum_probs=29.2
Q ss_pred EecCCcC-----ccccCCCCcccchHHHHHHHhhcCCCCCCCCCCeeeeeE
Q psy11832 129 EAHGSFH-----TSHCLTCRKDYSVAWMKERIFAEVIPTCEKCNGLVKPDI 174 (494)
Q Consensus 129 elHG~~~-----~~~C~~C~~~~~~~~~~~~i~~~~~P~C~~Cgg~lrP~V 174 (494)
.|-||++ ..+|.+|+..|... ...-+|++|||.+-++|
T Consensus 1241 Dl~GNLraFsrQ~~RC~kC~~kyRR~--------PL~G~C~kCGg~iilTv 1283 (1337)
T PRK14714 1241 DLIGNLRAFSRQEFRCLKCGTKYRRM--------PLAGKCRKCGGRIILTV 1283 (1337)
T ss_pred hhhhhhhhhhccceeecccCcccccC--------CCCCcccccCCeEEEEE
Confidence 5668886 45999999998532 23457999999888887
No 104
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=47.41 E-value=18 Score=40.42 Aligned_cols=45 Identities=16% Similarity=0.160 Sum_probs=31.8
Q ss_pred HHhHcCCCCeEEEeCcCCChhhhhhhhhhhhhcCCCceEEEEecccccc
Q psy11832 189 VDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPKADLLLIMGTSLVV 237 (494)
Q Consensus 189 a~~~~~~aDlllvvGTSl~V~pa~~lv~~~~~~~~~a~lv~IN~~p~~~ 237 (494)
+.+.+.+||++|+|||++.-.....+- .+ .+++++|.|+.+|...
T Consensus 277 ~~~~l~~aDlvL~lG~~~~~~~~~~~~-~~---~~~~~~i~id~d~~~i 321 (585)
T CHL00099 277 ANFAVSECDLLIALGARFDDRVTGKLD-EF---ACNAQVIHIDIDPAEI 321 (585)
T ss_pred HHHHHHhCCEEEEECCCCcccccCCHh-Hc---CCCCeEEEEECCHHHh
Confidence 445678999999999998765433322 22 3567899999888754
No 105
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=47.36 E-value=14 Score=33.70 Aligned_cols=34 Identities=15% Similarity=0.120 Sum_probs=22.8
Q ss_pred eeecCCCCCccchHHHHhhhccCCCCCCccCCCCCC
Q psy11832 280 TSHCLTCRKDYSVAWMKEGNLLGRMGITLGLHAGGL 315 (494)
Q Consensus 280 ~~~C~~C~~~y~~~~~~~~i~~~~~~~p~c~~C~g~ 315 (494)
.-.|+.|+++|+..+...... ....-.||.|++.
T Consensus 99 ~Y~Cp~C~~~y~~~ea~~~~d--~~~~f~Cp~Cg~~ 132 (147)
T smart00531 99 YYKCPNCQSKYTFLEANQLLD--MDGTFTCPRCGEE 132 (147)
T ss_pred EEECcCCCCEeeHHHHHHhcC--CCCcEECCCCCCE
Confidence 357999999999766443211 1223679999984
No 106
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=47.14 E-value=18 Score=40.33 Aligned_cols=48 Identities=15% Similarity=0.193 Sum_probs=34.4
Q ss_pred HHHhHcCCCCeEEEeCcCCChhhhhhhhhhhhhcCCCceEEEEecccccccc
Q psy11832 188 RVDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPKADLLLIMGTSLVVQP 239 (494)
Q Consensus 188 ~a~~~~~~aDlllvvGTSl~V~pa~~lv~~~~~~~~~a~lv~IN~~p~~~h~ 239 (494)
.+.+.+++||++|+|||++.......+... .+++++|.|+.+|....+
T Consensus 265 ~~~~~l~~aD~il~vG~~~~~~~~~~~~~~----~~~~~vi~id~d~~~i~~ 312 (574)
T PRK06466 265 EANMAMHHADVILAVGARFDDRVTNGPAKF----CPNAKIIHIDIDPASISK 312 (574)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCchhhc----CCCCeEEEEECCHHHhCC
Confidence 445567899999999999877654433222 356789999988887544
No 107
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=46.94 E-value=8.3 Score=33.70 Aligned_cols=29 Identities=14% Similarity=0.160 Sum_probs=20.4
Q ss_pred ccceeecCCCCCccchHHHHhhhccCCCCCCccCCCCCC
Q psy11832 277 SFHTSHCLTCRKDYSVAWMKEGNLLGRMGITLGLHAGGL 315 (494)
Q Consensus 277 s~~~~~C~~C~~~y~~~~~~~~i~~~~~~~p~c~~C~g~ 315 (494)
--...+|.+|++.++.+.. .-.||.|++.
T Consensus 67 vp~~~~C~~Cg~~~~~~~~----------~~~CP~Cgs~ 95 (113)
T PRK12380 67 KPAQAWCWDCSQVVEIHQH----------DAQCPHCHGE 95 (113)
T ss_pred eCcEEEcccCCCEEecCCc----------CccCcCCCCC
Confidence 3456899999998876531 1249999974
No 108
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=46.78 E-value=18 Score=40.69 Aligned_cols=46 Identities=15% Similarity=0.172 Sum_probs=32.5
Q ss_pred HHHhHcCCCCeEEEeCcCCChhhhhhhhhhhhhcCCCceEEEEecccccc
Q psy11832 188 RVDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPKADLLLIMGTSLVV 237 (494)
Q Consensus 188 ~a~~~~~~aDlllvvGTSl~V~pa~~lv~~~~~~~~~a~lv~IN~~p~~~ 237 (494)
.+.+.+++||++|+|||++.......+.. + .+++++|.|+.+|...
T Consensus 290 ~~~~~l~~aDlvL~lG~~l~~~~t~~~~~-~---~~~~~~i~Id~d~~~i 335 (612)
T PRK07789 290 AAVAALQRSDLLIALGARFDDRVTGKLDS-F---APDAKVIHADIDPAEI 335 (612)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCChhh-c---CCCCcEEEEECCHHHh
Confidence 45567889999999999987654332211 2 3567789999888754
No 109
>COG1379 PHP family phosphoesterase with a Zn ribbon [General function prediction only]
Probab=46.69 E-value=5.8 Score=40.87 Aligned_cols=101 Identities=16% Similarity=0.154 Sum_probs=54.7
Q ss_pred EEEeCcCCChhhhhhhhhhhhhcCCCceEEEEeccccc--ccccccccccccccCCCCcchhhhhHhhCC-CCCce----
Q psy11832 199 LLIMGTSLVVQPFCSLVDKVDVDFPKADLLLIMGTSLV--VQPFCSLVDKTNIRGSDSDNIDNLERIAGL-PDDKL---- 271 (494)
Q Consensus 199 llvvGTSl~V~pa~~lv~~~~~~~~~a~lv~IN~~p~~--~h~~a~l~~~~~l~~v~TQNID~Le~~AG~-~~~~v---- 271 (494)
+|.+|-|.-..-|..+.+.- .+| .+-|.+.-. .|++. +..+...|..-+.+.|-....= +..+|
T Consensus 165 fvELGLSADtdmAD~I~el~--~~p----FLtNSDAHSp~phrLg---REfn~f~v~~~sF~~~r~Ai~~~~g~~ivaNy 235 (403)
T COG1379 165 FVELGLSADTDMADMIEELH--RLP----FLTNSDAHSPYPHRLG---REFNQFEVEEISFEELRKAIKGKDGCKIVANY 235 (403)
T ss_pred HHHhccccCchHHHHHHHhc--cCC----cccccccCCCchhhhh---hhhheeecccCCHHHHHHHHhcCCCceEEEec
Confidence 56778777766665554443 111 111222222 34433 3322233344455555443321 01122
Q ss_pred --eeccCccceeecCCCCCccchHHHHhhhccCCCCCCccCCCCCC
Q psy11832 272 --VEAHGSFHTSHCLTCRKDYSVAWMKEGNLLGRMGITLGLHAGGL 315 (494)
Q Consensus 272 --vE~HGs~~~~~C~~C~~~y~~~~~~~~i~~~~~~~p~c~~C~g~ 315 (494)
.---|-.+..-|.+|..+|+++..+.. .-.||.|||.
T Consensus 236 GLdP~LGKY~~TAC~rC~t~y~le~A~~~-------~wrCpkCGg~ 274 (403)
T COG1379 236 GLDPRLGKYHLTACSRCYTRYSLEEAKSL-------RWRCPKCGGK 274 (403)
T ss_pred CcCccccchhHHHHHHhhhccCcchhhhh-------cccCcccccc
Confidence 223477888899999999999887642 2469999994
No 110
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=46.65 E-value=17 Score=40.53 Aligned_cols=47 Identities=17% Similarity=0.137 Sum_probs=33.1
Q ss_pred HHHhHcCCCCeEEEeCcCCChhhhhhhhhhhhhcCCCceEEEEeccccccc
Q psy11832 188 RVDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPKADLLLIMGTSLVVQ 238 (494)
Q Consensus 188 ~a~~~~~~aDlllvvGTSl~V~pa~~lv~~~~~~~~~a~lv~IN~~p~~~h 238 (494)
.+.+.+++||++|+|||++.......+.. . .+++++|.|+.+|....
T Consensus 273 ~~~~~l~~aDlil~vG~~~~~~~~~~~~~-~---~~~~~~i~id~d~~~i~ 319 (570)
T PRK06725 273 AANMAVTECDLLLALGVRFDDRVTGKLEL-F---SPHSKKVHIDIDPSEFH 319 (570)
T ss_pred HHHHHHHhCCEEEEeCCCCCccccCcccc-c---CCCCeEEEEeCCHHHhC
Confidence 35567789999999999987655433211 2 35677899998887753
No 111
>PF09845 DUF2072: Zn-ribbon containing protein (DUF2072); InterPro: IPR018645 This archaeal Zinc-ribbon containing proteins have no known function.
Probab=46.56 E-value=9.1 Score=34.38 Aligned_cols=26 Identities=23% Similarity=0.724 Sum_probs=18.0
Q ss_pred ccCCCCcccchHHHHHHHhhcCCCCCCCCCCe
Q psy11832 138 HCLTCRKDYSVAWMKERIFAEVIPTCEKCNGL 169 (494)
Q Consensus 138 ~C~~C~~~~~~~~~~~~i~~~~~P~C~~Cgg~ 169 (494)
+|++|++.|..... ...--||.||+.
T Consensus 3 ~Ct~Cg~~f~dgs~------eil~GCP~CGg~ 28 (131)
T PF09845_consen 3 QCTKCGRVFEDGSK------EILSGCPECGGN 28 (131)
T ss_pred ccCcCCCCcCCCcH------HHHccCcccCCc
Confidence 79999999863321 123469999974
No 112
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=46.50 E-value=32 Score=32.14 Aligned_cols=40 Identities=15% Similarity=0.105 Sum_probs=29.1
Q ss_pred HHhHc---CCCCeEEEeCcCCChhhhhhhhhhhhhcCCCceEEEEe
Q psy11832 189 VDVDF---PKADLLLIMGTSLVVQPFCSLVDKVDVDFPKADLLLIM 231 (494)
Q Consensus 189 a~~~~---~~aDlllvvGTSl~V~pa~~lv~~~~~~~~~a~lv~IN 231 (494)
+.+.+ ..+|++|.+|+.. |-+.+.++..|+.. +.+.|.|.
T Consensus 91 ~~e~~~g~g~~DlvlfvG~~~--y~~~~~ls~lk~f~-~~~~i~l~ 133 (162)
T TIGR00315 91 SWEGFDGEGNYDLVLFLGIIY--YYLSQMLSSLKHFS-HIVTIAID 133 (162)
T ss_pred hhhhccCCCCcCEEEEeCCcc--hHHHHHHHHHHhhc-CcEEEEec
Confidence 44556 7899999999998 66676777775444 66666665
No 113
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=46.32 E-value=12 Score=32.86 Aligned_cols=29 Identities=14% Similarity=0.142 Sum_probs=19.7
Q ss_pred cceeecCCCCCccchHHHHhhhccCCCCCCccCCCCCC
Q psy11832 278 FHTSHCLTCRKDYSVAWMKEGNLLGRMGITLGLHAGGL 315 (494)
Q Consensus 278 ~~~~~C~~C~~~y~~~~~~~~i~~~~~~~p~c~~C~g~ 315 (494)
-...+|.+|++.|+.... ..-.||.|++.
T Consensus 68 p~~~~C~~Cg~~~~~~~~---------~~~~CP~Cgs~ 96 (114)
T PRK03681 68 EAECWCETCQQYVTLLTQ---------RVRRCPQCHGD 96 (114)
T ss_pred CcEEEcccCCCeeecCCc---------cCCcCcCcCCC
Confidence 346799999988765421 11349999984
No 114
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=46.07 E-value=17 Score=40.76 Aligned_cols=47 Identities=6% Similarity=-0.010 Sum_probs=32.8
Q ss_pred HHHhHcCCCCeEEEeCcCCChhhhhhhhhhhhhcCCCceEEEEeccccccc
Q psy11832 188 RVDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPKADLLLIMGTSLVVQ 238 (494)
Q Consensus 188 ~a~~~~~~aDlllvvGTSl~V~pa~~lv~~~~~~~~~a~lv~IN~~p~~~h 238 (494)
.+.+.+++||++|++||++.-........ . .++.++|.|+.+|....
T Consensus 262 ~a~~~l~~aD~iL~lG~~l~~~~t~~~~~-~---~~~~~~I~id~d~~~i~ 308 (588)
T TIGR01504 262 YGNATLLESDFVFGIGNRWANRHTGSVDV-Y---TEGRKFVHVDIEPTQIG 308 (588)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCcccc-c---CCCCeEEEeeCCHHHhc
Confidence 34556789999999999987554433221 2 35677999998887653
No 115
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=46.07 E-value=14 Score=39.44 Aligned_cols=30 Identities=20% Similarity=0.385 Sum_probs=22.1
Q ss_pred CccccCCCCcccchHHHHHHHhhcCCCCCCCCCCeeeee
Q psy11832 135 HTSHCLTCRKDYSVAWMKERIFAEVIPTCEKCNGLVKPD 173 (494)
Q Consensus 135 ~~~~C~~C~~~~~~~~~~~~i~~~~~P~C~~Cgg~lrP~ 173 (494)
++++|..|++.|+ +. ...+||.|+|++...
T Consensus 1 ~~l~C~~Cg~~~~-~~--------~~~~C~~c~g~l~~~ 30 (398)
T TIGR03844 1 YTLRCPGCGEVLP-DH--------YTLSCPLDCGLLRAE 30 (398)
T ss_pred CEEEeCCCCCccC-Cc--------cccCCCCCCCceEEe
Confidence 3679999999986 21 246899999876654
No 116
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=45.87 E-value=19 Score=39.96 Aligned_cols=48 Identities=15% Similarity=0.210 Sum_probs=33.0
Q ss_pred HHHhHcCCCCeEEEeCcCCChhhhhhhhhhhhhcCCCceEEEEecccccccc
Q psy11832 188 RVDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPKADLLLIMGTSLVVQP 239 (494)
Q Consensus 188 ~a~~~~~~aDlllvvGTSl~V~pa~~lv~~~~~~~~~a~lv~IN~~p~~~h~ 239 (494)
.+.+.+++||++|+|||++.-.....+.. . .+++++|.|+.+|....+
T Consensus 266 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~-~---~~~~~~I~id~d~~~~~~ 313 (561)
T PRK06048 266 YANYAIQESDLIIAVGARFDDRVTGKLAS-F---APNAKIIHIDIDPAEISK 313 (561)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCChhh-c---CCCCeEEEEECCHHHhCC
Confidence 34557789999999999986544332222 2 356789999988876543
No 117
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=45.54 E-value=7.9 Score=26.86 Aligned_cols=30 Identities=23% Similarity=0.677 Sum_probs=19.8
Q ss_pred cccCCCCcccchHHHHHHHhhcCCCCCCCCCCee
Q psy11832 137 SHCLTCRKDYSVAWMKERIFAEVIPTCEKCNGLV 170 (494)
Q Consensus 137 ~~C~~C~~~~~~~~~~~~i~~~~~P~C~~Cgg~l 170 (494)
..|.+|++.|...... ....-.|..||+.|
T Consensus 2 r~C~~Cg~~Yh~~~~p----P~~~~~Cd~cg~~L 31 (36)
T PF05191_consen 2 RICPKCGRIYHIEFNP----PKVEGVCDNCGGEL 31 (36)
T ss_dssp EEETTTTEEEETTTB------SSTTBCTTTTEBE
T ss_pred cCcCCCCCccccccCC----CCCCCccCCCCCee
Confidence 4699999988654221 12345799999865
No 118
>COG1439 Predicted nucleic acid-binding protein, consists of a PIN domain and a Zn-ribbon module [General function prediction only]
Probab=45.02 E-value=11 Score=35.62 Aligned_cols=29 Identities=17% Similarity=0.454 Sum_probs=21.2
Q ss_pred CccccCCCCcccchHHHHHHHhhcCCCCCCCCCCeeeee
Q psy11832 135 HTSHCLTCRKDYSVAWMKERIFAEVIPTCEKCNGLVKPD 173 (494)
Q Consensus 135 ~~~~C~~C~~~~~~~~~~~~i~~~~~P~C~~Cgg~lrP~ 173 (494)
+..+|..|.+.|+. ..-.||.||+.++=.
T Consensus 138 w~~rC~GC~~~f~~----------~~~~Cp~CG~~~~~~ 166 (177)
T COG1439 138 WRLRCHGCKRIFPE----------PKDFCPICGSPLKRK 166 (177)
T ss_pred eeEEEecCceecCC----------CCCcCCCCCCceEEe
Confidence 35699999998761 234699999986543
No 119
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=44.33 E-value=13 Score=33.52 Aligned_cols=16 Identities=19% Similarity=0.520 Sum_probs=13.2
Q ss_pred ceeecCCCCCccchHH
Q psy11832 279 HTSHCLTCRKDYSVAW 294 (494)
Q Consensus 279 ~~~~C~~C~~~y~~~~ 294 (494)
...+|..||+.++.++
T Consensus 69 ~~~~C~~CG~~~~~~~ 84 (135)
T PRK03824 69 AVLKCRNCGNEWSLKE 84 (135)
T ss_pred eEEECCCCCCEEeccc
Confidence 4689999999988764
No 120
>PF12172 DUF35_N: Rubredoxin-like zinc ribbon domain (DUF35_N); InterPro: IPR022002 This domain has no known function and is found in conserved hypothetical archaeal and bacterial proteins. The domain is duplicated in O53566 from SWISSPROT. The structure of a DUF35 representative reveals two long N-terminal helices followed by a rubredoxin-like zinc ribbon domain represented in this family and a C-terminal OB fold domain. Zinc is chelated by the four conserved cysteines in the alignment. ; PDB: 3IRB_A.
Probab=43.97 E-value=14 Score=25.37 Aligned_cols=28 Identities=18% Similarity=0.311 Sum_probs=15.3
Q ss_pred cCccceeecCCCCCccchHHHHhhhccCCCCCCccCCCCC
Q psy11832 275 HGSFHTSHCLTCRKDYSVAWMKEGNLLGRMGITLGLHAGG 314 (494)
Q Consensus 275 HGs~~~~~C~~C~~~y~~~~~~~~i~~~~~~~p~c~~C~g 314 (494)
-|.|.-.+|.+|++.+ -.|.+.|++|++
T Consensus 6 ~~~l~~~rC~~Cg~~~------------~pPr~~Cp~C~s 33 (37)
T PF12172_consen 6 EGRLLGQRCRDCGRVQ------------FPPRPVCPHCGS 33 (37)
T ss_dssp TT-EEEEE-TTT--EE------------ES--SEETTTT-
T ss_pred CCEEEEEEcCCCCCEe------------cCCCcCCCCcCc
Confidence 3667788999999853 134567899976
No 121
>PRK07591 threonine synthase; Validated
Probab=43.66 E-value=13 Score=39.86 Aligned_cols=29 Identities=17% Similarity=0.329 Sum_probs=21.7
Q ss_pred CccceeecCCCCCccchHHHHhhhccCCCCCCccCCCCCC
Q psy11832 276 GSFHTSHCLTCRKDYSVAWMKEGNLLGRMGITLGLHAGGL 315 (494)
Q Consensus 276 Gs~~~~~C~~C~~~y~~~~~~~~i~~~~~~~p~c~~C~g~ 315 (494)
..+++..|++|+++|+.+.. ..||.|++.
T Consensus 14 ~~~~~l~C~~Cg~~~~~~~~-----------~~C~~cg~~ 42 (421)
T PRK07591 14 GPAVALKCRECGAEYPLGPI-----------HVCEECFGP 42 (421)
T ss_pred cceeEEEeCCCCCcCCCCCC-----------ccCCCCCCe
Confidence 34667899999999985531 458899875
No 122
>PRK06450 threonine synthase; Validated
Probab=43.65 E-value=16 Score=38.07 Aligned_cols=29 Identities=24% Similarity=0.507 Sum_probs=21.5
Q ss_pred ccccCCCCcccchHHHHHHHhhcCCCCCCCCCCeeeee
Q psy11832 136 TSHCLTCRKDYSVAWMKERIFAEVIPTCEKCNGLVKPD 173 (494)
Q Consensus 136 ~~~C~~C~~~~~~~~~~~~i~~~~~P~C~~Cgg~lrP~ 173 (494)
.++|..|++.|+. ...++||.||+++...
T Consensus 3 ~~~C~~Cg~~~~~---------~~~~~C~~cg~~l~~~ 31 (338)
T PRK06450 3 KEVCMKCGKERES---------IYEIRCKKCGGPFEIL 31 (338)
T ss_pred eeEECCcCCcCCC---------cccccCCcCCCEeEEe
Confidence 3689999999742 1236899999987654
No 123
>PLN02573 pyruvate decarboxylase
Probab=43.55 E-value=21 Score=39.93 Aligned_cols=48 Identities=10% Similarity=0.034 Sum_probs=33.4
Q ss_pred HHHhHcCCCCeEEEeCcCCChhhhhhhhhhhhhcCCCceEEEEecccccccc
Q psy11832 188 RVDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPKADLLLIMGTSLVVQP 239 (494)
Q Consensus 188 ~a~~~~~~aDlllvvGTSl~V~pa~~lv~~~~~~~~~a~lv~IN~~p~~~h~ 239 (494)
.+.+.+++||++|+||+++.-.....+... .++.++|.|+.++....+
T Consensus 284 ~~~~~~~~aDlvl~lG~~l~~~~~~~~~~~----~~~~~~I~id~d~~~i~~ 331 (578)
T PLN02573 284 FCAEIVESADAYLFAGPIFNDYSSVGYSLL----LKKEKAIIVQPDRVTIGN 331 (578)
T ss_pred HHHHHHHhCCEEEEECCccCCccccccccc----CCCCcEEEEeCCEEEECC
Confidence 345567889999999999866554333211 356789999988877543
No 124
>PRK05858 hypothetical protein; Provisional
Probab=43.41 E-value=27 Score=38.60 Aligned_cols=57 Identities=12% Similarity=0.100 Sum_probs=37.7
Q ss_pred cCCCCChHHHHHHHhHcCCCCeEEEeCcCCChhhhhhhhhhhhhcCCCceEEEEecccccccc
Q psy11832 177 FGENLPSRYFHRVDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPKADLLLIMGTSLVVQP 239 (494)
Q Consensus 177 FgE~~~~~~~~~a~~~~~~aDlllvvGTSl~V~pa~~lv~~~~~~~~~a~lv~IN~~p~~~h~ 239 (494)
|.|.+|...-..+.+.++++|++|+|||++....... .+ .++.++|.|+.+|....+
T Consensus 244 ~~~~hpl~~~~~~~~~l~~aD~vl~vG~~~~~~~~~~---~~---~~~~~~i~id~d~~~~~~ 300 (542)
T PRK05858 244 VPADHPLAFSRARGKALGEADVVLVVGVPMDFRLGFG---VF---GGTAQLVHVDDAPPQRAH 300 (542)
T ss_pred CCCCCchhhhHHHHHHHHhCCEEEEECCCCccccccc---cc---CCCCEEEEECCCHHHhcC
Confidence 5555555444455677889999999999875433221 12 235689999988877654
No 125
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=43.23 E-value=8.4 Score=33.62 Aligned_cols=35 Identities=14% Similarity=0.409 Sum_probs=20.7
Q ss_pred EEEecCCcCccccCCCCcccchHHHHHHHhhcCCCCCCCCCCe
Q psy11832 127 LVEAHGSFHTSHCLTCRKDYSVAWMKERIFAEVIPTCEKCNGL 169 (494)
Q Consensus 127 v~elHG~~~~~~C~~C~~~~~~~~~~~~i~~~~~P~C~~Cgg~ 169 (494)
.+++.=-=-..+|..|++.++.+... -.||.||+.
T Consensus 61 ~L~Ie~~p~~~~C~~Cg~~~~~~~~~--------~~CP~Cgs~ 95 (113)
T PF01155_consen 61 ELEIEEVPARARCRDCGHEFEPDEFD--------FSCPRCGSP 95 (113)
T ss_dssp EEEEEEE--EEEETTTS-EEECHHCC--------HH-SSSSSS
T ss_pred EEEEEecCCcEECCCCCCEEecCCCC--------CCCcCCcCC
Confidence 34444444577999999998755322 249999986
No 126
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=43.15 E-value=22 Score=39.55 Aligned_cols=47 Identities=11% Similarity=0.096 Sum_probs=32.5
Q ss_pred HHHhHcCCCCeEEEeCcCCChhhhhhhhhhhhhcCCCceEEEEeccccccc
Q psy11832 188 RVDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPKADLLLIMGTSLVVQ 238 (494)
Q Consensus 188 ~a~~~~~~aDlllvvGTSl~V~pa~~lv~~~~~~~~~a~lv~IN~~p~~~h 238 (494)
.+.+.+++||++|+|||++.-........ + .+++++|.|+.+|....
T Consensus 269 ~~~~~~~~aD~vl~lG~~l~~~~~~~~~~-~---~~~~~~i~id~d~~~i~ 315 (566)
T PRK07282 269 AANIAMTEADFMINIGSRFDDRLTGNPKT-F---AKNAKVAHIDIDPAEIG 315 (566)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCChhh-c---CCCCeEEEEECCHHHhC
Confidence 44567789999999999986543322211 2 35678999998887653
No 127
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=41.93 E-value=13 Score=28.75 Aligned_cols=37 Identities=22% Similarity=0.591 Sum_probs=25.2
Q ss_pred CccccCC--CCcccchHHHHHHHhhcCCCCCCCCCCeeeeeEEe
Q psy11832 135 HTSHCLT--CRKDYSVAWMKERIFAEVIPTCEKCNGLVKPDIVF 176 (494)
Q Consensus 135 ~~~~C~~--C~~~~~~~~~~~~i~~~~~P~C~~Cgg~lrP~Vv~ 176 (494)
....|++ |.- |+.+.+.....|.||-|++.|+..+.+
T Consensus 17 ~VW~Ct~e~C~g-----WmR~nFs~~~~p~CPlC~s~M~~~~r~ 55 (59)
T PF14169_consen 17 KVWECTSEDCNG-----WMRDNFSFEEEPVCPLCKSPMVSGTRM 55 (59)
T ss_pred eeEEeCCCCCCc-----ccccccccCCCccCCCcCCccccceee
Confidence 3456765 653 455555556789999999998876643
No 128
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=41.71 E-value=23 Score=39.41 Aligned_cols=46 Identities=20% Similarity=0.038 Sum_probs=33.2
Q ss_pred HHHhHcCCCCeEEEeCcCCChhhhhhhhhhhhhcCCCceEEEEecccccc
Q psy11832 188 RVDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPKADLLLIMGTSLVV 237 (494)
Q Consensus 188 ~a~~~~~~aDlllvvGTSl~V~pa~~lv~~~~~~~~~a~lv~IN~~p~~~ 237 (494)
.+.+.++++|++|++||.+.......+... .++.++|.|+.+|...
T Consensus 277 ~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~----~~~~~~i~id~d~~~~ 322 (578)
T PRK06112 277 HLRDLVREADVVLLVGTRTNQNGTDSWSLY----PEQAQYIHIDVDGEEV 322 (578)
T ss_pred HHHHHHHhCCEEEEECCCCCcccccccccc----CCCCeEEEEECChHHh
Confidence 455677899999999999876654443221 3567899999887654
No 129
>PRK08322 acetolactate synthase; Reviewed
Probab=41.62 E-value=23 Score=39.07 Aligned_cols=47 Identities=19% Similarity=0.227 Sum_probs=33.0
Q ss_pred HHHhHcCCCCeEEEeCcCCChhhhhhhhhhhhhcCCCceEEEEecccccccc
Q psy11832 188 RVDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPKADLLLIMGTSLVVQP 239 (494)
Q Consensus 188 ~a~~~~~~aDlllvvGTSl~V~pa~~lv~~~~~~~~~a~lv~IN~~p~~~h~ 239 (494)
.+.+.+++||++|+|||++.-.+...+. . .++.++|.|+.+|....+
T Consensus 255 ~~~~~l~~aDlil~lG~~l~~~~~~~~~--~---~~~~~~i~id~d~~~~~~ 301 (547)
T PRK08322 255 YVHCAIEHADLIINVGHDVIEKPPFFMN--P---NGDKKVIHINFLPAEVDP 301 (547)
T ss_pred HHHHHHHhCCEEEEECCCCccccccccC--C---CCCCeEEEEeCCHHHcCC
Confidence 3556778999999999998765543321 1 246788999988876543
No 130
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=41.42 E-value=24 Score=38.99 Aligned_cols=46 Identities=15% Similarity=0.213 Sum_probs=31.6
Q ss_pred HHHhHcCCCCeEEEeCcCCChhhhhhhhhhhhhcCCCceEEEEecccccc
Q psy11832 188 RVDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPKADLLLIMGTSLVV 237 (494)
Q Consensus 188 ~a~~~~~~aDlllvvGTSl~V~pa~~lv~~~~~~~~~a~lv~IN~~p~~~ 237 (494)
.+...+++||++|++||++.......+. .+ .+++++|.|+.+|...
T Consensus 255 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~-~~---~~~~~~i~id~d~~~~ 300 (548)
T PRK08978 255 AANLAVQECDLLIAVGARFDDRVTGKLN-TF---APHAKVIHLDIDPAEI 300 (548)
T ss_pred HHHHHHHhCCEEEEEcCCCCccccCCcc-cc---CCCCeEEEEECCHHHh
Confidence 4556678899999999998654332221 12 3567889999888654
No 131
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=41.20 E-value=24 Score=39.48 Aligned_cols=44 Identities=16% Similarity=0.091 Sum_probs=30.0
Q ss_pred HHHhHcCCCCeEEEeCcCCChhhhhhhhhhhhhcCCCceEEEEeccccccc
Q psy11832 188 RVDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPKADLLLIMGTSLVVQ 238 (494)
Q Consensus 188 ~a~~~~~~aDlllvvGTSl~V~pa~~lv~~~~~~~~~a~lv~IN~~p~~~h 238 (494)
.+.+.+++||++|+|||++... .+.. ..+++++|.|+.+|....
T Consensus 265 ~a~~~~~~aDlvl~lG~~~~~~---~~~~----~~~~~~~i~Id~d~~~~~ 308 (597)
T PRK08273 265 PSYELMRECDTLLMVGSSFPYS---EFLP----KEGQARGVQIDIDGRMLG 308 (597)
T ss_pred HHHHHHHhCCEEEEeCCCCCHH---hcCC----CCCCCeEEEEeCCHHHcC
Confidence 4556788999999999997422 2211 124568999988887654
No 132
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=41.10 E-value=24 Score=39.14 Aligned_cols=46 Identities=15% Similarity=0.218 Sum_probs=32.4
Q ss_pred HHHhHcCCCCeEEEeCcCCChhhhhhhhhhhhhcCCCceEEEEecccccc
Q psy11832 188 RVDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPKADLLLIMGTSLVV 237 (494)
Q Consensus 188 ~a~~~~~~aDlllvvGTSl~V~pa~~lv~~~~~~~~~a~lv~IN~~p~~~ 237 (494)
.+.+.+.++|++|+|||++.......+-.. .++.++|.|+.+|...
T Consensus 260 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~----~~~~~~i~id~d~~~~ 305 (558)
T TIGR00118 260 TANLAVHECDLIIAVGARFDDRVTGNLAKF----APNAKIIHIDIDPAEI 305 (558)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCchhhc----CCCCcEEEEeCCHHHh
Confidence 445667889999999999866543333222 3567899999888664
No 133
>PRK00762 hypA hydrogenase nickel incorporation protein; Provisional
Probab=41.06 E-value=17 Score=32.34 Aligned_cols=33 Identities=12% Similarity=0.041 Sum_probs=19.7
Q ss_pred ceeecCCCCCccchHHHHhhhccCCCCCCccCCCCCC
Q psy11832 279 HTSHCLTCRKDYSVAWMKEGNLLGRMGITLGLHAGGL 315 (494)
Q Consensus 279 ~~~~C~~C~~~y~~~~~~~~i~~~~~~~p~c~~C~g~ 315 (494)
...+| +|++.|+.++.... ...+.-.||.|++.
T Consensus 69 ~~~~C-~Cg~~~~~~~~~~~---~~~~~~~CP~Cgs~ 101 (124)
T PRK00762 69 VEIEC-ECGYEGVVDEDEID---HYAAVIECPVCGNK 101 (124)
T ss_pred eeEEe-eCcCcccccccchh---ccccCCcCcCCCCC
Confidence 46789 99998876531100 00112359999974
No 134
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=40.56 E-value=33 Score=31.27 Aligned_cols=73 Identities=21% Similarity=0.315 Sum_probs=43.1
Q ss_pred HHHHHhHcCCCCeEEEeCcCCChhhhhhhhhhhhhcCCCceEEEEeccccccccccccccccc--ccCCCCcchhhhhHh
Q psy11832 186 FHRVDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPKADLLLIMGTSLVVQPFCSLVDKTN--IRGSDSDNIDNLERI 263 (494)
Q Consensus 186 ~~~a~~~~~~aDlllvvGTSl~V~pa~~lv~~~~~~~~~a~lv~IN~~p~~~h~~a~l~~~~~--l~~v~TQNID~Le~~ 263 (494)
...+.+.+.+||++++-|||+.=.....++..+ .+++.+ .+-...+..++ ..|.+.|. +...+-.|.|.+-+.
T Consensus 53 ~~~~~~~l~~aD~viiTGsTlvN~Ti~~iL~~~---~~~~~v-il~GpS~~~~P-~~l~~~Gv~~v~g~~v~d~~~~~~~ 127 (147)
T PF04016_consen 53 DEDAEEILPWADVVIITGSTLVNGTIDDILELA---RNAREV-ILYGPSAPLHP-EALFDYGVTYVGGSRVVDPEKVLRA 127 (147)
T ss_dssp GGGHHHHGGG-SEEEEECHHCCTTTHHHHHHHT---TTSSEE-EEESCCGGS-G-GGGCCTT-SEEEEEEES-HHHHHHH
T ss_pred HHHHHHHHccCCEEEEEeeeeecCCHHHHHHhC---ccCCeE-EEEecCchhhH-HHHHhCCCCEEEEEEEeCHHHHHHH
Confidence 345667889999999999999999999999998 234444 43333333333 22333332 333444556555443
No 135
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=40.30 E-value=18 Score=38.66 Aligned_cols=26 Identities=19% Similarity=0.167 Sum_probs=18.6
Q ss_pred ceeecCCCCCccchHHHHhhhccCCCCCCccCCCCCC
Q psy11832 279 HTSHCLTCRKDYSVAWMKEGNLLGRMGITLGLHAGGL 315 (494)
Q Consensus 279 ~~~~C~~C~~~y~~~~~~~~i~~~~~~~p~c~~C~g~ 315 (494)
++..|++||++|+ +.. ...||.|+|.
T Consensus 1 ~~l~C~~Cg~~~~-~~~----------~~~C~~c~g~ 26 (398)
T TIGR03844 1 YTLRCPGCGEVLP-DHY----------TLSCPLDCGL 26 (398)
T ss_pred CEEEeCCCCCccC-Ccc----------ccCCCCCCCc
Confidence 5789999999997 331 2458888764
No 136
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=40.18 E-value=26 Score=38.89 Aligned_cols=47 Identities=13% Similarity=0.210 Sum_probs=32.5
Q ss_pred HHhHcCCCCeEEEeCcCCChhhhhhhhhhhhhcCCCceEEEEeccccccc
Q psy11832 189 VDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPKADLLLIMGTSLVVQ 238 (494)
Q Consensus 189 a~~~~~~aDlllvvGTSl~V~pa~~lv~~~~~~~~~a~lv~IN~~p~~~h 238 (494)
+...+.+||++|+|||++.-.+...+.... .++.++|.|+.+|....
T Consensus 267 ~~~~~~~aDlvl~lG~~~~~~~~~~~~~~~---~~~~~~i~id~d~~~~~ 313 (572)
T PRK06456 267 ASMAALESDAMLVVGARFSDRTFTSYDEMV---ETRKKFIMVNIDPTDGE 313 (572)
T ss_pred HHHHHHhCCEEEEECCCCchhhcccccccc---CCCCeEEEEeCChHHhC
Confidence 445667899999999998766654432221 13567899988887654
No 137
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=39.23 E-value=28 Score=38.92 Aligned_cols=46 Identities=13% Similarity=0.237 Sum_probs=31.8
Q ss_pred HHHhHcCCCCeEEEeCcCCChhhhhhhhhhhhhcCCCceEEEEecccccc
Q psy11832 188 RVDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPKADLLLIMGTSLVV 237 (494)
Q Consensus 188 ~a~~~~~~aDlllvvGTSl~V~pa~~lv~~~~~~~~~a~lv~IN~~p~~~ 237 (494)
.+.+.+++||++|++||++.-.....+.. + .++.++|.|+.+|...
T Consensus 262 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~-~---~~~~~~i~id~d~~~~ 307 (586)
T PRK06276 262 AANYSVTESDVLIAIGCRFSDRTTGDISS-F---APNAKIIHIDIDPAEI 307 (586)
T ss_pred HHHHHHHcCCEEEEECCCCCccccCCccc-c---CCCCeEEEEECCHHHh
Confidence 45567789999999999876443322211 2 3567789999888764
No 138
>COG2260 Predicted Zn-ribbon RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=39.02 E-value=20 Score=27.68 Aligned_cols=21 Identities=24% Similarity=0.514 Sum_probs=14.0
Q ss_pred ecCCCCCccchHHHHhhhccCCCCCCccCCCCCCC
Q psy11832 282 HCLTCRKDYSVAWMKEGNLLGRMGITLGLHAGGLS 316 (494)
Q Consensus 282 ~C~~C~~~y~~~~~~~~i~~~~~~~p~c~~C~g~~ 316 (494)
.|.+|+. |++.+ .||.||+..
T Consensus 7 kC~~cg~-YTLke-------------~Cp~CG~~t 27 (59)
T COG2260 7 KCPKCGR-YTLKE-------------KCPVCGGDT 27 (59)
T ss_pred cCcCCCc-eeecc-------------cCCCCCCcc
Confidence 4778874 55432 489999863
No 139
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=38.75 E-value=30 Score=38.36 Aligned_cols=47 Identities=15% Similarity=0.234 Sum_probs=33.2
Q ss_pred HHhHcCCCCeEEEeCcCCChhhhhhhhhhhhhcCCCceEEEEecccccccc
Q psy11832 189 VDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPKADLLLIMGTSLVVQP 239 (494)
Q Consensus 189 a~~~~~~aDlllvvGTSl~V~pa~~lv~~~~~~~~~a~lv~IN~~p~~~h~ 239 (494)
+.+.+++||++|++|+++.......+.. + .++.++|.|+.+|....+
T Consensus 271 ~~~~l~~aDlvl~lG~~~~~~~~~~~~~-~---~~~~~~I~id~d~~~~~~ 317 (564)
T PRK08155 271 TNYILQEADLLIVLGARFDDRAIGKTEQ-F---CPNAKIIHVDIDRAELGK 317 (564)
T ss_pred HHHHHHhCCEEEEECCCCCccccCCHhh-c---CCCCeEEEEECCHHHhCC
Confidence 4456789999999999987665433322 2 366788999988876543
No 140
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=38.43 E-value=26 Score=39.17 Aligned_cols=63 Identities=11% Similarity=0.081 Sum_probs=38.4
Q ss_pred hcCCCCCCeEEEeccccccCCCCcchhhhccc-CCCCCCCCCCcccEEEeCChhHHHHHHHHHhC
Q psy11832 337 ASAPPHCPRLLINKEKVGVGSRNPLMGLLGLS-EGLGFDNENNVRDVFLEGDCDSGCQKLADMLG 400 (494)
Q Consensus 337 ~~~~~~~Dlliv~GTSl~V~~~~P~a~l~~~~-~g~~~~~~~~~~dl~i~g~~~~~~~~L~~~lg 400 (494)
.+.+++||++|++|+++....+.|-+.++... ....+.. ....++.|.|++...+++|.+.|+
T Consensus 260 ~~~l~~aDlvl~lG~~~~~~~~~~~~~~I~vd~d~~~~~~-~~~~~~~i~~D~~~~l~~L~~~L~ 323 (578)
T PRK06546 260 HEAMHEADLLILLGTDFPYDQFLPDVRTAQVDIDPEHLGR-RTRVDLAVHGDVAETIRALLPLVK 323 (578)
T ss_pred HHHHHhCCEEEEEcCCCChhhcCCCCcEEEEeCCHHHhCC-CCCCCeEEEcCHHHHHHHHHHhhc
Confidence 34567999999999997642222211121110 0001221 124688999999999999988775
No 141
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=38.34 E-value=8.1 Score=28.88 Aligned_cols=32 Identities=31% Similarity=0.514 Sum_probs=19.1
Q ss_pred cccCCCCcccchHHH--HHHHhh----cCCC---CCCCCCC
Q psy11832 137 SHCLTCRKDYSVAWM--KERIFA----EVIP---TCEKCNG 168 (494)
Q Consensus 137 ~~C~~C~~~~~~~~~--~~~i~~----~~~P---~C~~Cgg 168 (494)
.+|..|+..|+.+.- ...|.. ...| +||.|+.
T Consensus 2 y~C~~CgyiYd~~~Gd~~~~i~pGt~f~~Lp~~w~CP~C~a 42 (50)
T cd00730 2 YECRICGYIYDPAEGDPDEGIPPGTPFEDLPDDWVCPVCGA 42 (50)
T ss_pred cCCCCCCeEECCCCCCcccCcCCCCCHhHCCCCCCCCCCCC
Confidence 589999999874321 111111 1234 8999985
No 142
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=37.09 E-value=9.6 Score=28.10 Aligned_cols=34 Identities=24% Similarity=0.417 Sum_probs=18.5
Q ss_pred ccccCCCCcccchHHHH--HHHh----hcCCC---CCCCCCCe
Q psy11832 136 TSHCLTCRKDYSVAWMK--ERIF----AEVIP---TCEKCNGL 169 (494)
Q Consensus 136 ~~~C~~C~~~~~~~~~~--~~i~----~~~~P---~C~~Cgg~ 169 (494)
+.+|..|+..|+.+.-. ..|. -..+| +||.|+..
T Consensus 1 ky~C~~CgyvYd~~~Gd~~~~i~pGt~F~~Lp~~w~CP~C~a~ 43 (47)
T PF00301_consen 1 KYQCPVCGYVYDPEKGDPENGIPPGTPFEDLPDDWVCPVCGAP 43 (47)
T ss_dssp EEEETTTSBEEETTTBBGGGTB-TT--GGGS-TT-B-TTTSSB
T ss_pred CcCCCCCCEEEcCCcCCcccCcCCCCCHHHCCCCCcCcCCCCc
Confidence 35899999988743211 1111 11233 89999864
No 143
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=37.02 E-value=12 Score=31.49 Aligned_cols=35 Identities=11% Similarity=0.115 Sum_probs=23.1
Q ss_pred ceeecCCCCCccchHHHHhhhccCCCCCCccCCCCCCCCCCCCc
Q psy11832 279 HTSHCLTCRKDYSVAWMKEGNLLGRMGITLGLHAGGLSSIPGGA 322 (494)
Q Consensus 279 ~~~~C~~C~~~y~~~~~~~~i~~~~~~~p~c~~C~g~~~i~~p~ 322 (494)
.-++|-+||..|..+.++ .+.+||.|.+- .|-.|.
T Consensus 57 ~Pa~CkkCGfef~~~~ik--------~pSRCP~CKSE-~Ie~pr 91 (97)
T COG3357 57 RPARCKKCGFEFRDDKIK--------KPSRCPKCKSE-WIEEPR 91 (97)
T ss_pred cChhhcccCccccccccC--------CcccCCcchhh-cccCCc
Confidence 457899999988765443 24569999863 344443
No 144
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=36.62 E-value=40 Score=36.67 Aligned_cols=52 Identities=17% Similarity=0.022 Sum_probs=40.7
Q ss_pred HHHHhHcCCCCeEEEeCcCCChhhhhhhhhhhhhcCCCceEEEEecccccccccc
Q psy11832 187 HRVDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPKADLLLIMGTSLVVQPFC 241 (494)
Q Consensus 187 ~~a~~~~~~aDlllvvGTSl~V~pa~~lv~~~~~~~~~a~lv~IN~~p~~~h~~a 241 (494)
..|.+.+++|||+|-|||-++=+...+-... .+|+.++|-||-.|-...++.
T Consensus 287 ~AAN~~A~~ADlVigiGTR~~DFTTgS~alF---~~~~~k~l~lNV~~~da~K~~ 338 (617)
T COG3962 287 LAANRAAEEADLVIGIGTRLQDFTTGSKALF---KNPGVKFLNLNVQPFDAYKHD 338 (617)
T ss_pred HHHHhhhhhcCEEEEecccccccccccHHHh---cCCCceEEEeecccccccccc
Confidence 4566777899999999999887777776544 478999999998887765543
No 145
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=36.55 E-value=22 Score=31.78 Aligned_cols=30 Identities=7% Similarity=0.163 Sum_probs=20.7
Q ss_pred ccccCCCCccc-chHHHHHHHhhcCCCCCCCCCCeeeee
Q psy11832 136 TSHCLTCRKDY-SVAWMKERIFAEVIPTCEKCNGLVKPD 173 (494)
Q Consensus 136 ~~~C~~C~~~~-~~~~~~~~i~~~~~P~C~~Cgg~lrP~ 173 (494)
+-.|.+|+++| +. ......||.||....|.
T Consensus 9 Kr~Cp~cg~kFYDL--------nk~p~vcP~cg~~~~~~ 39 (129)
T TIGR02300 9 KRICPNTGSKFYDL--------NRRPAVSPYTGEQFPPE 39 (129)
T ss_pred cccCCCcCcccccc--------CCCCccCCCcCCccCcc
Confidence 45799999985 22 23466899999765444
No 146
>PRK11269 glyoxylate carboligase; Provisional
Probab=36.55 E-value=32 Score=38.52 Aligned_cols=46 Identities=9% Similarity=0.007 Sum_probs=31.7
Q ss_pred HHHhHcCCCCeEEEeCcCCChhhhhhhhhhhhhcCCCceEEEEecccccc
Q psy11832 188 RVDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPKADLLLIMGTSLVV 237 (494)
Q Consensus 188 ~a~~~~~~aDlllvvGTSl~V~pa~~lv~~~~~~~~~a~lv~IN~~p~~~ 237 (494)
.+.+.+++||++|++||++.-.....+.. . .++.++|.|+.+|...
T Consensus 263 ~~~~~~~~aDlvl~lG~~~~~~~~~~~~~-~---~~~~~~i~Vd~d~~~~ 308 (591)
T PRK11269 263 YGNATLLASDFVLGIGNRWANRHTGSVEV-Y---TKGRKFVHVDIEPTQI 308 (591)
T ss_pred HHHHHHHhCCEEEEeCCCCCccccCchhh-c---CCCCeEEEeeCCHHHh
Confidence 34456789999999999976554433222 2 3567789998877764
No 147
>PRK14715 DNA polymerase II large subunit; Provisional
Probab=36.47 E-value=23 Score=42.95 Aligned_cols=37 Identities=19% Similarity=0.520 Sum_probs=27.8
Q ss_pred EecCCcC-----ccccCCCCcccchHHHHHHHhhcCCCCCCCCCCeeeeeE
Q psy11832 129 EAHGSFH-----TSHCLTCRKDYSVAWMKERIFAEVIPTCEKCNGLVKPDI 174 (494)
Q Consensus 129 elHG~~~-----~~~C~~C~~~~~~~~~~~~i~~~~~P~C~~Cgg~lrP~V 174 (494)
.|-||++ ..+| +|+..|... ...-+||+|||.+-++|
T Consensus 1530 Dl~GNLRaFsrQ~~RC-kC~~kyRR~--------PL~G~C~kCGg~~ilTV 1571 (1627)
T PRK14715 1530 DLIGNLRAFSRQEFRC-KCGAKYRRV--------PLKGKCPKCGSKLILTV 1571 (1627)
T ss_pred hhhhhhhhhhccceee-cCCCccccC--------CCCCcCcccCCeEEEEE
Confidence 5668886 4599 999988532 23457999999888877
No 148
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=35.82 E-value=15 Score=22.78 Aligned_cols=22 Identities=18% Similarity=0.466 Sum_probs=12.8
Q ss_pred ccCCCCcccchHHHHHHHhhcCCCCCCCCCCe
Q psy11832 138 HCLTCRKDYSVAWMKERIFAEVIPTCEKCNGL 169 (494)
Q Consensus 138 ~C~~C~~~~~~~~~~~~i~~~~~P~C~~Cgg~ 169 (494)
.|.+|+...+. ...-|+.||..
T Consensus 1 ~Cp~CG~~~~~----------~~~fC~~CG~~ 22 (23)
T PF13240_consen 1 YCPNCGAEIED----------DAKFCPNCGTP 22 (23)
T ss_pred CCcccCCCCCC----------cCcchhhhCCc
Confidence 36777766431 23457777764
No 149
>PF14353 CpXC: CpXC protein
Probab=35.78 E-value=19 Score=31.75 Aligned_cols=19 Identities=21% Similarity=0.676 Sum_probs=16.4
Q ss_pred cCccceeecCCCCCccchH
Q psy11832 275 HGSFHTSHCLTCRKDYSVA 293 (494)
Q Consensus 275 HGs~~~~~C~~C~~~y~~~ 293 (494)
=|+|+..+|.+||+.+.++
T Consensus 33 ~g~l~~~~CP~Cg~~~~~~ 51 (128)
T PF14353_consen 33 DGSLFSFTCPSCGHKFRLE 51 (128)
T ss_pred cCCcCEEECCCCCCceecC
Confidence 4899999999999987654
No 150
>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]
Probab=35.74 E-value=46 Score=35.07 Aligned_cols=87 Identities=20% Similarity=0.234 Sum_probs=57.0
Q ss_pred eeeEEecCCCCChH---HHHHHHh-HcCCCCeEEEeCcCCChhhhhhhhhhhhhcCCCceEEEEeccccccccccccccc
Q psy11832 171 KPDIVFFGENLPSR---YFHRVDV-DFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPKADLLLIMGTSLVVQPFCSLVDK 246 (494)
Q Consensus 171 rP~Vv~FgE~~~~~---~~~~a~~-~~~~aDlllvvGTSl~V~pa~~lv~~~~~~~~~a~lv~IN~~p~~~h~~a~l~~~ 246 (494)
-|.-+-|-+.+|.- .+....- .-+++|..|||||- |.++||+.+.......++|.|+-.|+++...+...-
T Consensus 306 Ypf~vdF~rG~prynPgE~s~vdlL~~k~vDAalvi~sD----p~ah~P~~~~~~l~eIPvI~iDp~~~pTt~vadVvi- 380 (429)
T COG1029 306 YPFAVDFSRGYPRYNPGEFSAVDLLKRKEVDAALVIASD----PGAHFPRDAVEHLAEIPVICIDPHPTPTTEVADVVI- 380 (429)
T ss_pred CceeeecccCCcCCCcccccHHHHHhccCCCeEEEEecC----ccccChHHHHHHhhcCCEEEecCCCCcchhhcceec-
Confidence 35666776665532 2222221 23578999999994 566777666555678899999999999877666543
Q ss_pred ccccCCCCcchhhhhHhhCCCCCceeeccCcccee
Q psy11832 247 TNIRGSDSDNIDNLERIAGLPDDKLVEAHGSFHTS 281 (494)
Q Consensus 247 ~~l~~v~TQNID~Le~~AG~~~~~vvE~HGs~~~~ 281 (494)
---||| +|+-||+++.
T Consensus 381 -------P~aI~g------------mE~~GTayRm 396 (429)
T COG1029 381 -------PSAIDG------------MEAEGTAYRM 396 (429)
T ss_pred -------ccceee------------eeccceEEee
Confidence 233444 5677888754
No 151
>TIGR00375 conserved hypothetical protein TIGR00375. The member of this family from Methanococcus jannaschii, MJ0043, is considerably longer and appears to contain an intein N-terminal to the region of homology.
Probab=35.53 E-value=25 Score=37.32 Aligned_cols=38 Identities=21% Similarity=0.561 Sum_probs=27.5
Q ss_pred cCCcCccccCCCCcccchHHHHHHHhhcCCCCCCCCCCeeeeeE
Q psy11832 131 HGSFHTSHCLTCRKDYSVAWMKERIFAEVIPTCEKCNGLVKPDI 174 (494)
Q Consensus 131 HG~~~~~~C~~C~~~~~~~~~~~~i~~~~~P~C~~Cgg~lrP~V 174 (494)
-|-++.--|.+|+..++..... ....+|| ||+.++-.|
T Consensus 235 ~GKYh~~~c~~C~~~~~~~~~~-----~~~~~Cp-CG~~i~~GV 272 (374)
T TIGR00375 235 LGKYHQTACEACGEPAVSEDAE-----TACANCP-CGGRIKKGV 272 (374)
T ss_pred CCccchhhhcccCCcCCchhhh-----hcCCCCC-CCCcceech
Confidence 4678889999999887643221 2357899 999876666
No 152
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=35.38 E-value=36 Score=38.09 Aligned_cols=48 Identities=8% Similarity=0.111 Sum_probs=31.9
Q ss_pred HHHhHcCCCCeEEEeCcCCChhhhhhhhhhhhhcCCCceEEEEeccccccc
Q psy11832 188 RVDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPKADLLLIMGTSLVVQ 238 (494)
Q Consensus 188 ~a~~~~~~aDlllvvGTSl~V~pa~~lv~~~~~~~~~a~lv~IN~~p~~~h 238 (494)
.+.+.+++||++|+|||++........-... .+++++|.|+.++....
T Consensus 280 ~a~~~~~~aDlvl~lG~~~~~~~~~~~~~~~---~~~~~~i~id~d~~~~~ 327 (587)
T PRK06965 280 EANMAMQHCDVLIAIGARFDDRVIGNPAHFA---SRPRKIIHIDIDPSSIS 327 (587)
T ss_pred HHHHHHHhCCEEEEECCCCcccccCChhhcC---CCCceEEEEeCCHHHhC
Confidence 3456778899999999998765432221111 23478999998887643
No 153
>PRK12496 hypothetical protein; Provisional
Probab=35.18 E-value=22 Score=33.11 Aligned_cols=27 Identities=19% Similarity=0.347 Sum_probs=19.1
Q ss_pred ceeecCCCCCccchHHHHhhhccCCCCCCccCCCCCC
Q psy11832 279 HTSHCLTCRKDYSVAWMKEGNLLGRMGITLGLHAGGL 315 (494)
Q Consensus 279 ~~~~C~~C~~~y~~~~~~~~i~~~~~~~p~c~~C~g~ 315 (494)
+..+|..|++.|+... +.-.||.||..
T Consensus 126 w~~~C~gC~~~~~~~~----------~~~~C~~CG~~ 152 (164)
T PRK12496 126 WRKVCKGCKKKYPEDY----------PDDVCEICGSP 152 (164)
T ss_pred eeEECCCCCccccCCC----------CCCcCCCCCCh
Confidence 3567999999986432 11348999986
No 154
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=35.03 E-value=8.7 Score=35.44 Aligned_cols=37 Identities=19% Similarity=0.541 Sum_probs=24.3
Q ss_pred EEEeccccchHHhcCCCCCCEEEecCCcCccccCCCCcccchHHHHHHHhhcCCCCCCCCCCeee
Q psy11832 107 RHFTQNIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDYSVAWMKERIFAEVIPTCEKCNGLVK 171 (494)
Q Consensus 107 ~iiTQNIDgLh~kAG~~~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~i~~~~~P~C~~Cgg~lr 171 (494)
+++|.+.|--++.. ...|++|+.. .+-.||.|+..+|
T Consensus 14 H~~t~~~~~~p~~~---------------~~fC~kCG~~-------------tI~~Cp~C~~~Ir 50 (158)
T PF10083_consen 14 HVITDSYDKNPELR---------------EKFCSKCGAK-------------TITSCPNCSTPIR 50 (158)
T ss_pred cccccccccCchHH---------------HHHHHHhhHH-------------HHHHCcCCCCCCC
Confidence 46777777653222 3358888864 3457999987766
No 155
>PRK07524 hypothetical protein; Provisional
Probab=34.78 E-value=34 Score=37.70 Aligned_cols=48 Identities=19% Similarity=0.115 Sum_probs=31.9
Q ss_pred HHHHhHcCCCCeEEEeCcCCChhhhhh-hhhhhhhcCCCceEEEEecccccc
Q psy11832 187 HRVDVDFPKADLLLIMGTSLVVQPFCS-LVDKVDVDFPKADLLLIMGTSLVV 237 (494)
Q Consensus 187 ~~a~~~~~~aDlllvvGTSl~V~pa~~-lv~~~~~~~~~a~lv~IN~~p~~~ 237 (494)
..+.+.++++|++|+|||++....... +...+ .+++++|.|+.+|...
T Consensus 255 ~~~~~~~~~aDlvl~vG~~~~~~~~~~~~~~~~---~~~~~~i~id~d~~~~ 303 (535)
T PRK07524 255 PAVRALIAEADVVLAVGTELGETDYDVYFDGGF---PLPGELIRIDIDPDQL 303 (535)
T ss_pred HHHHHHHHhCCEEEEeCCCcCcccccccccccc---CCCCCEEEEECCHHHh
Confidence 456667889999999999985443221 11112 2457789999888754
No 156
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=34.41 E-value=36 Score=37.88 Aligned_cols=46 Identities=15% Similarity=0.097 Sum_probs=31.3
Q ss_pred HHHhHcCCCCeEEEeCcCCChhhhhhhhhhhhhcCCCceEEEEecccccc
Q psy11832 188 RVDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPKADLLLIMGTSLVV 237 (494)
Q Consensus 188 ~a~~~~~~aDlllvvGTSl~V~pa~~lv~~~~~~~~~a~lv~IN~~p~~~ 237 (494)
.+.+.+.++|++|++||++.......+... .++.++|.|+.+|...
T Consensus 274 ~~~~~l~~aDlvL~lG~~~~~~~~~~~~~~----~~~~~~i~id~d~~~i 319 (571)
T PRK07710 274 TANMALYECDLLINIGARFDDRVTGNLAYF----AKEATVAHIDIDPAEI 319 (571)
T ss_pred HHHHHHHhCCEEEEeCCCCCccccCchhhc----CCCCeEEEEECCHHHh
Confidence 345567789999999999876543222222 3566788888887654
No 157
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=33.90 E-value=37 Score=29.90 Aligned_cols=59 Identities=14% Similarity=0.042 Sum_probs=32.1
Q ss_pred hhcCCCCCCeEEEeccccccCCCCcc-hhhhccc-------CCCCCCCCCCcccEEEeCChhHHHHHH
Q psy11832 336 SASAPPHCPRLLINKEKVGVGSRNPL-MGLLGLS-------EGLGFDNENNVRDVFLEGDCDSGCQKL 395 (494)
Q Consensus 336 ~~~~~~~~Dlliv~GTSl~V~~~~P~-a~l~~~~-------~g~~~~~~~~~~dl~i~g~~~~~~~~L 395 (494)
+.+.+++||++|++|+++.-...... ..+.... ....... ....++.+.|+....+.+|
T Consensus 71 ~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~~-~~~~~~~i~~d~~~~l~~L 137 (137)
T PF00205_consen 71 ANEALEQADLVLAIGTRLSDFNTYGFSPAFNPDAKIIQIDPDPAEIGK-NYPPDVAIVGDIKAFLRAL 137 (137)
T ss_dssp HHHHHHHSSEEEEESSSSSTTTTTTTTGCSTTTSEEEEEESSGGGTTS-SSEESEEEESHHHHHHHHH
T ss_pred HHHHhcCCCEEEEECCCCccccccccccccCCCCEEEEEECCHHHhCC-CCCCCEEEEECHHHHhhCC
Confidence 34556789999999999854111111 0111000 0111111 1246788889888777665
No 158
>PRK14873 primosome assembly protein PriA; Provisional
Probab=33.44 E-value=64 Score=36.89 Aligned_cols=10 Identities=10% Similarity=-0.319 Sum_probs=7.1
Q ss_pred CCccCCCCCC
Q psy11832 306 ITLGLHAGGL 315 (494)
Q Consensus 306 ~p~c~~C~g~ 315 (494)
+..||+|++.
T Consensus 422 p~~Cp~Cgs~ 431 (665)
T PRK14873 422 DWRCPRCGSD 431 (665)
T ss_pred CccCCCCcCC
Confidence 4568888874
No 159
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=33.42 E-value=28 Score=33.00 Aligned_cols=31 Identities=29% Similarity=0.454 Sum_probs=22.1
Q ss_pred ccccCCCCcccchHHHHHHHhhcCCCCCCCCCCeee
Q psy11832 136 TSHCLTCRKDYSVAWMKERIFAEVIPTCEKCNGLVK 171 (494)
Q Consensus 136 ~~~C~~C~~~~~~~~~~~~i~~~~~P~C~~Cgg~lr 171 (494)
..+|..|+..++.+.... ..-.||.||+.|.
T Consensus 113 ~y~C~~~~~r~sfdeA~~-----~~F~Cp~Cg~~L~ 143 (176)
T COG1675 113 YYVCPNCHVKYSFDEAME-----LGFTCPKCGEDLE 143 (176)
T ss_pred ceeCCCCCCcccHHHHHH-----hCCCCCCCCchhh
Confidence 457988998888765433 2368999998653
No 160
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=32.82 E-value=11 Score=26.70 Aligned_cols=28 Identities=25% Similarity=0.580 Sum_probs=17.4
Q ss_pred ecCCCCCccchHHHHhhhccCCCCCCccCCCCCC
Q psy11832 282 HCLTCRKDYSVAWMKEGNLLGRMGITLGLHAGGL 315 (494)
Q Consensus 282 ~C~~C~~~y~~~~~~~~i~~~~~~~p~c~~C~g~ 315 (494)
+|++|+....... . ...++-.|+.|+|.
T Consensus 1 ~CP~C~~~l~~~~-----~-~~~~id~C~~C~G~ 28 (41)
T PF13453_consen 1 KCPRCGTELEPVR-----L-GDVEIDVCPSCGGI 28 (41)
T ss_pred CcCCCCcccceEE-----E-CCEEEEECCCCCeE
Confidence 5899987533221 1 33455678999983
No 161
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=32.72 E-value=36 Score=37.55 Aligned_cols=46 Identities=11% Similarity=0.134 Sum_probs=30.0
Q ss_pred HHHhHcCCCCeEEEeCcCCChhhhhhhhhhhhhcCCCceEEEEecccccc
Q psy11832 188 RVDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPKADLLLIMGTSLVV 237 (494)
Q Consensus 188 ~a~~~~~~aDlllvvGTSl~V~pa~~lv~~~~~~~~~a~lv~IN~~p~~~ 237 (494)
.+.+.+++||++|+|||++.-.....+...+ +..++|-|+..+...
T Consensus 265 ~~~~~~~~aDlvl~lG~~l~~~~~~~~~~~~----~~~~~I~id~~~~~~ 310 (539)
T TIGR03393 265 AVKEAIEGADAVICVGVRFTDTITAGFTHQL----TPEQTIDVQPHAARV 310 (539)
T ss_pred HHHHHHhhCCEEEEECCcccccccceeeccC----CcccEEEEcCCeEEE
Confidence 4556778999999999998755443332222 335677777666554
No 162
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=32.03 E-value=2e+02 Score=33.70 Aligned_cols=37 Identities=14% Similarity=0.149 Sum_probs=25.3
Q ss_pred ccee-ecCCCCCccchHHHHhhhccCCCCCCccCCCCCCC
Q psy11832 278 FHTS-HCLTCRKDYSVAWMKEGNLLGRMGITLGLHAGGLS 316 (494)
Q Consensus 278 ~~~~-~C~~C~~~y~~~~~~~~i~~~~~~~p~c~~C~g~~ 316 (494)
|.+. .|..|+..|+ ++...+|.-..|.-.||.|.|++
T Consensus 242 FS~~~acp~~g~~~~--eleprlFSFNsP~GaCp~C~GlG 279 (935)
T COG0178 242 FSENFACPVCGFSIP--ELEPRLFSFNSPFGACPTCDGLG 279 (935)
T ss_pred eecccCCCccCcccC--CCCcccccCCCCCCCCCcCCCcc
Confidence 4443 4999997764 44445566566677899999974
No 163
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=31.81 E-value=54 Score=36.58 Aligned_cols=66 Identities=17% Similarity=0.170 Sum_probs=40.6
Q ss_pred HhhhcCCCCCCeEEEecccccc-----CCCCcchhhhccc-CCCCCCCCCCcccEEEeCChhHHHHHHHHHhC
Q psy11832 334 VHSASAPPHCPRLLINKEKVGV-----GSRNPLMGLLGLS-EGLGFDNENNVRDVFLEGDCDSGCQKLADMLG 400 (494)
Q Consensus 334 ~~~~~~~~~~Dlliv~GTSl~V-----~~~~P~a~l~~~~-~g~~~~~~~~~~dl~i~g~~~~~~~~L~~~lg 400 (494)
..+.....+||++|++|+++.- ..+.|-..++..- .+.+... ....|+.|.|++..++..|.+.+.
T Consensus 258 ~~a~~~~~~aDlll~vG~rf~~~~~~~~~f~~~~~ii~iDidp~ei~k-~~~~~~~i~gD~~~~l~~L~~~l~ 329 (550)
T COG0028 258 KAANEALEEADLLLAVGARFDDRVTGYSGFAPPAAIIHIDIDPAEIGK-NYPVDVPIVGDAKATLEALLEELK 329 (550)
T ss_pred HHHHHHhhcCCEEEEecCCCcccccchhhhCCcCCEEEEeCChHHhCC-CCCCCeeEeccHHHHHHHHHHhhh
Confidence 3456677889999999999872 1111111121100 0111121 234789999999999999988765
No 164
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=31.76 E-value=79 Score=29.78 Aligned_cols=35 Identities=14% Similarity=0.132 Sum_probs=23.4
Q ss_pred CCCCeEEEeCcCCChhhhhhhhhhhhhcCCCceEEEEe
Q psy11832 194 PKADLLLIMGTSLVVQPFCSLVDKVDVDFPKADLLLIM 231 (494)
Q Consensus 194 ~~aDlllvvGTSl~V~pa~~lv~~~~~~~~~a~lv~IN 231 (494)
..+|++|++|++. +-..+.++..|+..| .+.|.|.
T Consensus 107 ~~~DlvlfvG~~~--~~~~~~l~~lk~f~~-~~~~~~~ 141 (171)
T PRK00945 107 GNYDLVIFIGVTY--YYASQGLSALKHFSP-LKTITID 141 (171)
T ss_pred CCcCEEEEecCCc--hhHHHHHHHHhhcCC-ceEEEec
Confidence 6899999999987 444555555544444 5555554
No 165
>PRK06154 hypothetical protein; Provisional
Probab=31.46 E-value=46 Score=37.04 Aligned_cols=45 Identities=16% Similarity=0.070 Sum_probs=31.3
Q ss_pred HHHhHcCCCCeEEEeCcCCChhhhhhhhhhhhhcCCCceEEEEeccccccc
Q psy11832 188 RVDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPKADLLLIMGTSLVVQ 238 (494)
Q Consensus 188 ~a~~~~~~aDlllvvGTSl~V~pa~~lv~~~~~~~~~a~lv~IN~~p~~~h 238 (494)
.+.+.+++||++|+|||++..+... ..+ -+++++|.|+.+|....
T Consensus 273 ~~~~~~~~aDlvL~lG~~l~~~~~~---~~~---~~~~~vI~id~d~~~~~ 317 (565)
T PRK06154 273 TVAHFLREADVLFGIGCSLTRSYYG---LPM---PEGKTIIHSTLDDADLN 317 (565)
T ss_pred HHHHHHHhCCEEEEECCCCcccccC---ccC---CCCCeEEEEECCHHHhc
Confidence 4556778999999999998754221 112 23678889998887654
No 166
>COG1439 Predicted nucleic acid-binding protein, consists of a PIN domain and a Zn-ribbon module [General function prediction only]
Probab=30.63 E-value=32 Score=32.53 Aligned_cols=25 Identities=12% Similarity=0.264 Sum_probs=18.7
Q ss_pred ceeecCCCCCccchHHHHhhhccCCCCCCccCCCCCC
Q psy11832 279 HTSHCLTCRKDYSVAWMKEGNLLGRMGITLGLHAGGL 315 (494)
Q Consensus 279 ~~~~C~~C~~~y~~~~~~~~i~~~~~~~p~c~~C~g~ 315 (494)
+.-+|..|++.|+. +.-.||.||+.
T Consensus 138 w~~rC~GC~~~f~~------------~~~~Cp~CG~~ 162 (177)
T COG1439 138 WRLRCHGCKRIFPE------------PKDFCPICGSP 162 (177)
T ss_pred eeEEEecCceecCC------------CCCcCCCCCCc
Confidence 34689999999871 22458999986
No 167
>PRK08197 threonine synthase; Validated
Probab=30.50 E-value=27 Score=37.04 Aligned_cols=29 Identities=24% Similarity=0.512 Sum_probs=20.9
Q ss_pred CccccCCCCcccchHHHHHHHhhcCCCCCCCCCCeeee
Q psy11832 135 HTSHCLTCRKDYSVAWMKERIFAEVIPTCEKCNGLVKP 172 (494)
Q Consensus 135 ~~~~C~~C~~~~~~~~~~~~i~~~~~P~C~~Cgg~lrP 172 (494)
..++|..|++.|+.+. ...+| .||+++..
T Consensus 6 ~~~~C~~Cg~~~~~~~--------~~~~C-~cg~~l~~ 34 (394)
T PRK08197 6 SHLECSKCGETYDADQ--------VHNLC-KCGKPLLV 34 (394)
T ss_pred eEEEECCCCCCCCCCC--------cceec-CCCCeeEE
Confidence 3589999999986432 24679 79987643
No 168
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=30.18 E-value=47 Score=36.73 Aligned_cols=45 Identities=13% Similarity=0.161 Sum_probs=29.0
Q ss_pred HHHhHcCCCCeEEEeCcCCChhhhhhhhhhhhhcCCCceEEEEeccccc
Q psy11832 188 RVDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPKADLLLIMGTSLV 236 (494)
Q Consensus 188 ~a~~~~~~aDlllvvGTSl~V~pa~~lv~~~~~~~~~a~lv~IN~~p~~ 236 (494)
.+.+.+++||++|+|||++.-+..... .. ..++.++|.|+.++..
T Consensus 261 ~~~~~l~~aDliL~iG~~l~~~~~~~~--~~--~~~~~~~I~id~~~~~ 305 (535)
T TIGR03394 261 ELSRLVEESDGLLLLGVILSDTNFAVS--QR--KIDLRRTIHAFDRAVT 305 (535)
T ss_pred HHHHHHHhCCEEEEECCcccccccccc--cc--cCCCCcEEEEeCCEEE
Confidence 455667899999999999875422111 11 1345678888766654
No 169
>KOG1185|consensus
Probab=30.15 E-value=42 Score=36.70 Aligned_cols=61 Identities=16% Similarity=0.142 Sum_probs=43.5
Q ss_pred ecCCCCChHHHHHHHhHcCCCCeEEEeCcCCChhhhhhhhhhhhhcCCCceEEEEecccccccc
Q psy11832 176 FFGENLPSRYFHRVDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPKADLLLIMGTSLVVQP 239 (494)
Q Consensus 176 ~FgE~~~~~~~~~a~~~~~~aDlllvvGTSl~V~pa~~lv~~~~~~~~~a~lv~IN~~p~~~h~ 239 (494)
+-++++|-..-..-..++++||++|++|+-+.---....+... .+..++|.||..|..++.
T Consensus 257 ll~d~hPl~v~~aRS~ALk~ADvvll~GarlnwiLhfG~~Pk~---~kd~KfIqvd~n~Eel~~ 317 (571)
T KOG1185|consen 257 LLPDNHPLNVSSARSLALKKADVVLLAGARLNWILHFGLPPKW---SKDVKFIQVDINPEELGN 317 (571)
T ss_pred CCCCCCchhhhHHHHHHHhhCCEEEEecceeeEEEecCCCCcc---CCCceEEEEeCCHHHHhc
Confidence 3456677665555567889999999999977644444443333 578889999988887654
No 170
>PRK08266 hypothetical protein; Provisional
Probab=30.02 E-value=40 Score=37.15 Aligned_cols=46 Identities=11% Similarity=0.037 Sum_probs=31.2
Q ss_pred HHHhHcCCCCeEEEeCcCCChhhhhhhhhhhhhcCCCceEEEEeccccccc
Q psy11832 188 RVDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPKADLLLIMGTSLVVQ 238 (494)
Q Consensus 188 ~a~~~~~~aDlllvvGTSl~V~pa~~lv~~~~~~~~~a~lv~IN~~p~~~h 238 (494)
.+.+.+.+||++|++||++... ...+.. . .++.++|.|+.++....
T Consensus 256 ~~~~~~~~aDlvl~lG~~~~~~-~~~~~~-~---~~~~~~i~id~d~~~~~ 301 (542)
T PRK08266 256 AAYELWPQTDVVIGIGSRLELP-TFRWPW-R---PDGLKVIRIDIDPTEMR 301 (542)
T ss_pred HHHHHHHhCCEEEEeCCCcCcc-cccccc-c---CCCCcEEEEECCHHHhC
Confidence 3456778999999999998766 222211 1 24577899888777643
No 171
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=29.96 E-value=48 Score=37.03 Aligned_cols=47 Identities=19% Similarity=0.048 Sum_probs=30.7
Q ss_pred HHHhHcCCCCeEEEeCcCCChhhhhh-hh-hhhhhcCCCceEEEEecccccc
Q psy11832 188 RVDVDFPKADLLLIMGTSLVVQPFCS-LV-DKVDVDFPKADLLLIMGTSLVV 237 (494)
Q Consensus 188 ~a~~~~~~aDlllvvGTSl~V~pa~~-lv-~~~~~~~~~a~lv~IN~~p~~~ 237 (494)
.+.+.+++||++|+|||++.-..... .. ..+ .+++++|.|+.++...
T Consensus 259 ~~~~~~~~aDlvl~lG~~l~~~~~~~~~~~~~~---~~~~~iI~Id~d~~~~ 307 (588)
T PRK07525 259 AAMELIAKADVVLALGTRLNPFGTLPQYGIDYW---PKDAKIIQVDINPDRI 307 (588)
T ss_pred HHHHHHHhCCEEEEECCCCchhhcccccccccC---CCCCeEEEEECCHHHh
Confidence 34566789999999999976432211 10 111 2467899999888764
No 172
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=29.91 E-value=67 Score=34.40 Aligned_cols=43 Identities=14% Similarity=0.229 Sum_probs=30.4
Q ss_pred hHcCCCCeEEEeCcCCChhhhhhhhhhhhhcCCCceEEEEecccccccc
Q psy11832 191 VDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPKADLLLIMGTSLVVQP 239 (494)
Q Consensus 191 ~~~~~aDlllvvGTSl~V~pa~~lv~~~~~~~~~a~lv~IN~~p~~~h~ 239 (494)
+.+ ++|++|++||.+.-.....+. . .++.++|.|+.+|....+
T Consensus 271 ~~~-~aDlvl~lG~~~~~~~~~~~~--~---~~~~~~i~vd~d~~~~~~ 313 (432)
T TIGR00173 271 EEL-QPDLVIRFGGPPVSKRLRQWL--A---RQPAEYWVVDPDPGWLDP 313 (432)
T ss_pred hhC-CCCEEEEeCCCcchhHHHHHH--h---CCCCcEEEECCCCCccCC
Confidence 345 899999999998666554441 1 245788999988876543
No 173
>PRK06450 threonine synthase; Validated
Probab=29.86 E-value=29 Score=36.09 Aligned_cols=24 Identities=21% Similarity=0.447 Sum_probs=16.2
Q ss_pred eecCCCCCccchHHHHhhhccCCCCCCccCCCCCC
Q psy11832 281 SHCLTCRKDYSVAWMKEGNLLGRMGITLGLHAGGL 315 (494)
Q Consensus 281 ~~C~~C~~~y~~~~~~~~i~~~~~~~p~c~~C~g~ 315 (494)
..|++|+++|+.+. ...||.|++.
T Consensus 4 ~~C~~Cg~~~~~~~-----------~~~C~~cg~~ 27 (338)
T PRK06450 4 EVCMKCGKERESIY-----------EIRCKKCGGP 27 (338)
T ss_pred eEECCcCCcCCCcc-----------cccCCcCCCE
Confidence 57999999885321 2457888764
No 174
>PRK08197 threonine synthase; Validated
Probab=29.79 E-value=29 Score=36.82 Aligned_cols=27 Identities=19% Similarity=0.380 Sum_probs=19.1
Q ss_pred cceeecCCCCCccchHHHHhhhccCCCCCCccCCCCCC
Q psy11832 278 FHTSHCLTCRKDYSVAWMKEGNLLGRMGITLGLHAGGL 315 (494)
Q Consensus 278 ~~~~~C~~C~~~y~~~~~~~~i~~~~~~~p~c~~C~g~ 315 (494)
+....|++||++|+.+.. ...| .|++.
T Consensus 5 ~~~~~C~~Cg~~~~~~~~----------~~~C-~cg~~ 31 (394)
T PRK08197 5 VSHLECSKCGETYDADQV----------HNLC-KCGKP 31 (394)
T ss_pred eeEEEECCCCCCCCCCCc----------ceec-CCCCe
Confidence 456899999999986642 2346 78764
No 175
>PF08790 zf-LYAR: LYAR-type C2HC zinc finger ; InterPro: IPR014898 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This C2HC zinc finger domain is found in LYAR proteins such as Q08288 from SWISSPROT, which are involved in cell growth regulation. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1WJV_A.
Probab=29.68 E-value=20 Score=23.54 Aligned_cols=17 Identities=29% Similarity=0.663 Sum_probs=14.1
Q ss_pred ecCCCCCccchHHHHhh
Q psy11832 282 HCLTCRKDYSVAWMKEG 298 (494)
Q Consensus 282 ~C~~C~~~y~~~~~~~~ 298 (494)
.|++|++.|+.+.++.+
T Consensus 2 sCiDC~~~F~~~~y~~H 18 (28)
T PF08790_consen 2 SCIDCSKDFDGDSYKSH 18 (28)
T ss_dssp EETTTTEEEEGGGTTT-
T ss_pred eeecCCCCcCcCCcCCC
Confidence 69999999988887765
No 176
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=29.65 E-value=67 Score=35.61 Aligned_cols=46 Identities=7% Similarity=0.187 Sum_probs=30.5
Q ss_pred HHhHcCCCCeEEEeCcCCChhhhhhhhhhhhhcCCCceEEEEecccccccc
Q psy11832 189 VDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPKADLLLIMGTSLVVQP 239 (494)
Q Consensus 189 a~~~~~~aDlllvvGTSl~V~pa~~lv~~~~~~~~~a~lv~IN~~p~~~h~ 239 (494)
+.+.+++||++|+||+++.-.....+... ++.++|.|+.+|....+
T Consensus 280 ~~~~l~~aD~vl~vG~~l~~~~~~~~~~~-----~~~~~i~id~d~~~~~~ 325 (568)
T PRK07449 280 AAEELLQPDIVIQFGSPPTSKRLLQWLAD-----CEPEYWVVDPGPGRLDP 325 (568)
T ss_pred hhhhcCCCCEEEEeCCCCCchhHHHHHhc-----CCCCEEEECCCCCcCCC
Confidence 44677899999999999854433333111 23378899888876543
No 177
>PRK07758 hypothetical protein; Provisional
Probab=29.39 E-value=25 Score=29.90 Aligned_cols=23 Identities=17% Similarity=0.507 Sum_probs=19.7
Q ss_pred cchhhhhHhhCCCCCceeeccCc
Q psy11832 255 DNIDNLERIAGLPDDKLVEAHGS 277 (494)
Q Consensus 255 QNID~Le~~AG~~~~~vvE~HGs 277 (494)
.+|++|++.+..+.+.|..+||=
T Consensus 53 AGI~TL~dLv~~te~ELl~iknl 75 (95)
T PRK07758 53 HGIHTVEELSKYSEKEILKLHGM 75 (95)
T ss_pred cCCCcHHHHHcCCHHHHHHccCC
Confidence 36999999999998899999873
No 178
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=29.30 E-value=33 Score=23.23 Aligned_cols=24 Identities=13% Similarity=0.087 Sum_probs=15.1
Q ss_pred ecCCCCCccchHHHHhhhccCCCCCCccCCCCC
Q psy11832 282 HCLTCRKDYSVAWMKEGNLLGRMGITLGLHAGG 314 (494)
Q Consensus 282 ~C~~C~~~y~~~~~~~~i~~~~~~~p~c~~C~g 314 (494)
.|.+|+++.+++. ...-.|+.||.
T Consensus 2 ~C~~Cg~~~~~~~---------~~~irC~~CG~ 25 (32)
T PF03604_consen 2 ICGECGAEVELKP---------GDPIRCPECGH 25 (32)
T ss_dssp BESSSSSSE-BST---------SSTSSBSSSS-
T ss_pred CCCcCCCeeEcCC---------CCcEECCcCCC
Confidence 4889999876332 12347899987
No 179
>PRK09444 pntB pyridine nucleotide transhydrogenase; Provisional
Probab=28.12 E-value=1.2e+02 Score=32.96 Aligned_cols=38 Identities=11% Similarity=0.050 Sum_probs=28.8
Q ss_pred EEe-c-cCChhH---HHhhhcCCCCCCeEEEeccccccCCCCcchh
Q psy11832 323 EVF-S-ALCLEF---GVHSASAPPHCPRLLINKEKVGVGSRNPLMG 363 (494)
Q Consensus 323 ivf-e-~l~~~~---~~~~~~~~~~~Dlliv~GTSl~V~~~~P~a~ 363 (494)
|++ | +.|.+. ++.+..+++++|+.||+|..=+| .|+|.
T Consensus 357 VLLAEA~VPYd~v~eMdeIN~~F~~tDvalVIGANDvV---NPaA~ 399 (462)
T PRK09444 357 VLLAEAKVPYDIVLEMDEINDDFADTDTVLVIGANDTV---NPAAQ 399 (462)
T ss_pred eEEeecCCCHHHHHhHHhhccccccCCEEEEecCccCC---Ccccc
Confidence 455 4 566553 45667899999999999999999 77663
No 180
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=28.05 E-value=41 Score=37.42 Aligned_cols=43 Identities=21% Similarity=0.186 Sum_probs=29.1
Q ss_pred HHhHcCCCCeEEEeCcCCChhhhhhhhhhhhhcCCCceEEEEecccccc
Q psy11832 189 VDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPKADLLLIMGTSLVV 237 (494)
Q Consensus 189 a~~~~~~aDlllvvGTSl~V~pa~~lv~~~~~~~~~a~lv~IN~~p~~~ 237 (494)
+.+.++++|++|+|||++...+... . . .++.++|.|+.+|...
T Consensus 273 ~~~~~~~aDlvl~lG~~l~~~~~~~--~-~---~~~~~vi~Id~d~~~~ 315 (569)
T PRK08327 273 PRADLAEADLVLVVDSDVPWIPKKI--R-P---DADARVIQIDVDPLKS 315 (569)
T ss_pred cchhhhhCCEEEEeCCCCCCccccc--c-C---CCCCeEEEEeCChhhh
Confidence 4566789999999999874332211 1 1 2456789999887654
No 181
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=26.02 E-value=34 Score=35.20 Aligned_cols=29 Identities=21% Similarity=0.415 Sum_probs=19.6
Q ss_pred cccCCCCcccchHHHHHHHhhcCCCCCCCCCC--eeeeeEE
Q psy11832 137 SHCLTCRKDYSVAWMKERIFAEVIPTCEKCNG--LVKPDIV 175 (494)
Q Consensus 137 ~~C~~C~~~~~~~~~~~~i~~~~~P~C~~Cgg--~lrP~Vv 175 (494)
..|++|+.... .-.|.||+|++ .++|-.-
T Consensus 355 ~~c~~cg~~~~----------~~~~~c~~c~~~~~~~~~~~ 385 (389)
T PRK11788 355 YRCRNCGFTAR----------TLYWHCPSCKAWETIKPIRG 385 (389)
T ss_pred EECCCCCCCCc----------cceeECcCCCCccCcCCccc
Confidence 56999997642 23689999995 4555443
No 182
>PLN02569 threonine synthase
Probab=25.31 E-value=47 Score=36.45 Aligned_cols=30 Identities=23% Similarity=0.314 Sum_probs=22.3
Q ss_pred CccccCCCCcccchHHHHHHHhhcCCCCCCCCCCeeeee
Q psy11832 135 HTSHCLTCRKDYSVAWMKERIFAEVIPTCEKCNGLVKPD 173 (494)
Q Consensus 135 ~~~~C~~C~~~~~~~~~~~~i~~~~~P~C~~Cgg~lrP~ 173 (494)
..++|..|++.|+.+. ...+| .|||+|...
T Consensus 48 ~~l~C~~Cg~~y~~~~--------~~~~C-~cgg~l~~~ 77 (484)
T PLN02569 48 PFLECPLTGEKYSLDE--------VVYRS-KSGGLLDVR 77 (484)
T ss_pred cccEeCCCCCcCCCcc--------ccccC-CCCCeEEEe
Confidence 3689999999987542 24689 699988643
No 183
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=25.28 E-value=66 Score=35.43 Aligned_cols=46 Identities=15% Similarity=0.060 Sum_probs=30.8
Q ss_pred HHHhHcCCCCeEEEeCcCCChhhhhhhhhhhhhcCCCceEEEEeccccccc
Q psy11832 188 RVDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPKADLLLIMGTSLVVQ 238 (494)
Q Consensus 188 ~a~~~~~~aDlllvvGTSl~V~pa~~lv~~~~~~~~~a~lv~IN~~p~~~h 238 (494)
.+.+.+++||++|++|+++.-+....+. . .++.++|.|+.+|....
T Consensus 255 ~~~~~~~~aDlvl~lG~~~~~~~~~~~~--~---~~~~~~i~id~d~~~~~ 300 (539)
T TIGR02418 255 PGDRLLKQADLVITIGYDPIEYEPRNWN--S---ENDATIVHIDVEPAQID 300 (539)
T ss_pred HHHHHHHhCCEEEEecCcccccCccccC--c---CCCCeEEEEeCChHHcC
Confidence 3446778999999999987644332221 1 12467899998887643
No 184
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=24.83 E-value=21 Score=28.68 Aligned_cols=26 Identities=31% Similarity=0.735 Sum_probs=15.0
Q ss_pred CccccCCCCcccchHHHHHHHhhcCCCCCCCCCCeee
Q psy11832 135 HTSHCLTCRKDYSVAWMKERIFAEVIPTCEKCNGLVK 171 (494)
Q Consensus 135 ~~~~C~~C~~~~~~~~~~~~i~~~~~P~C~~Cgg~lr 171 (494)
...+|..|...|. ..+.||.|+.+|.
T Consensus 16 ~~~~C~~C~~~~~-----------~~a~CPdC~~~Le 41 (70)
T PF07191_consen 16 GHYHCEACQKDYK-----------KEAFCPDCGQPLE 41 (70)
T ss_dssp TEEEETTT--EEE-----------EEEE-TTT-SB-E
T ss_pred CEEECccccccce-----------ecccCCCcccHHH
Confidence 4668888888764 3578999987543
No 185
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=24.75 E-value=75 Score=35.15 Aligned_cols=42 Identities=21% Similarity=0.180 Sum_probs=29.6
Q ss_pred HHHhHcCCCCeEEEeCcCCChhhhhhhhhhhhhcCCCceEEEEeccccccc
Q psy11832 188 RVDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPKADLLLIMGTSLVVQ 238 (494)
Q Consensus 188 ~a~~~~~~aDlllvvGTSl~V~pa~~lv~~~~~~~~~a~lv~IN~~p~~~h 238 (494)
.+.+.+++||++|++||++.... .. .++.++|.|+.++....
T Consensus 252 ~~~~~l~~aDlvl~lG~~~~~~~------~~---~~~~~ii~id~d~~~~~ 293 (549)
T PRK06457 252 PSIEAMDKADLLIMLGTSFPYVN------FL---NKSAKVIQVDIDNSNIG 293 (549)
T ss_pred HHHHHHHhCCEEEEECCCCChhh------cC---CCCCcEEEEeCCHHHhC
Confidence 34567789999999999985322 12 23567899988887653
No 186
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=24.75 E-value=72 Score=35.10 Aligned_cols=48 Identities=13% Similarity=0.162 Sum_probs=30.6
Q ss_pred HHHHhHcCCCCeEEEeCcCCChhhhhhhhhhhhhcCCCceEEEEecccccc
Q psy11832 187 HRVDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPKADLLLIMGTSLVV 237 (494)
Q Consensus 187 ~~a~~~~~~aDlllvvGTSl~V~pa~~lv~~~~~~~~~a~lv~IN~~p~~~ 237 (494)
..+.+.++++|++|++||++.-+........+ .++.++|.|+.+|...
T Consensus 264 ~~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~---~~~~~~i~id~d~~~~ 311 (530)
T PRK07092 264 EKISALLDGHDLVLVIGAPVFTYHVEGPGPHL---PEGAELVQLTDDPGEA 311 (530)
T ss_pred HHHHHHHhhCCEEEEECCcccccccCCccccC---CCCCeEEEEeCChHHh
Confidence 34556788999999999974332222221122 2467788998888764
No 187
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=24.31 E-value=65 Score=36.21 Aligned_cols=64 Identities=17% Similarity=0.103 Sum_probs=37.4
Q ss_pred hcCCCCCCeEEEeccccccCCCCcchhhhcccCC--CCCCC----CCCcccEEEeCChhHHHHHHHHHhC
Q psy11832 337 ASAPPHCPRLLINKEKVGVGSRNPLMGLLGLSEG--LGFDN----ENNVRDVFLEGDCDSGCQKLADMLG 400 (494)
Q Consensus 337 ~~~~~~~Dlliv~GTSl~V~~~~P~a~l~~~~~g--~~~~~----~~~~~dl~i~g~~~~~~~~L~~~lg 400 (494)
.+.+.+||++|++||++..........+.....- +..+. .....++.|.|++...++.|.+.+.
T Consensus 292 ~~~l~~aDlvL~lG~~l~~~~t~~~~~~~~~~~~i~Id~d~~~i~~~~~~~~~i~gD~~~~l~~L~~~l~ 361 (612)
T PRK07789 292 VAALQRSDLLIALGARFDDRVTGKLDSFAPDAKVIHADIDPAEIGKNRHADVPIVGDVKEVIAELIAALR 361 (612)
T ss_pred HHHHHhCCEEEEECCCCCccccCChhhcCCCCcEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhhh
Confidence 4566789999999999865110011111110000 01110 1234689999999999999987663
No 188
>PRK05638 threonine synthase; Validated
Probab=24.21 E-value=46 Score=35.92 Aligned_cols=28 Identities=25% Similarity=0.679 Sum_probs=20.4
Q ss_pred ccccCCCCcccchHHHHHHHhhcCCCCCCCCCCeeeee
Q psy11832 136 TSHCLTCRKDYSVAWMKERIFAEVIPTCEKCNGLVKPD 173 (494)
Q Consensus 136 ~~~C~~C~~~~~~~~~~~~i~~~~~P~C~~Cgg~lrP~ 173 (494)
+++|..|++.|+.+ ...+| .||+++...
T Consensus 1 ~l~C~~Cg~~~~~~---------~~~~C-~c~~~l~~~ 28 (442)
T PRK05638 1 KMKCPKCGREYNSY---------IPPFC-ICGELLEII 28 (442)
T ss_pred CeEeCCCCCCCCCC---------Cceec-CCCCcEEEE
Confidence 36899999998632 23689 899987644
No 189
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=23.95 E-value=98 Score=34.46 Aligned_cols=65 Identities=11% Similarity=0.071 Sum_probs=38.1
Q ss_pred hhcCCCCCCeEEEeccccccCCCC----cchhhhcccC-CCCCCC--CCCcccEEEeCChhHHHHHHHHHhC
Q psy11832 336 SASAPPHCPRLLINKEKVGVGSRN----PLMGLLGLSE-GLGFDN--ENNVRDVFLEGDCDSGCQKLADMLG 400 (494)
Q Consensus 336 ~~~~~~~~Dlliv~GTSl~V~~~~----P~a~l~~~~~-g~~~~~--~~~~~dl~i~g~~~~~~~~L~~~lg 400 (494)
+.+.+++||++|++||++...+.. +-.-++.... +..... .....++.|.|++...+++|.+.+.
T Consensus 273 ~~~~~~~aDlvl~lG~~l~~~~~~~~~~~~~~vi~Id~d~~~~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 344 (569)
T PRK08327 273 PRADLAEADLVLVVDSDVPWIPKKIRPDADARVIQIDVDPLKSRIPLWGFPCDLCIQADTSTALDQLEERLK 344 (569)
T ss_pred cchhhhhCCEEEEeCCCCCCccccccCCCCCeEEEEeCChhhhcccccCcceeEEEecCHHHHHHHHHHHHh
Confidence 456678999999999987542111 0001111000 001110 1234689999999999999987764
No 190
>PF09151 DUF1936: Domain of unknown function (DUF1936); InterPro: IPR015234 This domain is found in a set of hypothetical archaeal proteins. Its exact function has not, as yet, been defined. ; PDB: 2QH1_B 1PVM_B.
Probab=23.75 E-value=46 Score=22.38 Aligned_cols=12 Identities=42% Similarity=1.135 Sum_probs=7.8
Q ss_pred CCCCCC-Ceeeee
Q psy11832 162 TCEKCN-GLVKPD 173 (494)
Q Consensus 162 ~C~~Cg-g~lrP~ 173 (494)
.||+|| |.+.|-
T Consensus 3 lcpkcgvgvl~pv 15 (36)
T PF09151_consen 3 LCPKCGVGVLEPV 15 (36)
T ss_dssp B-TTTSSSBEEEE
T ss_pred cCCccCceEEEEe
Confidence 588887 666663
No 191
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=23.66 E-value=2.2e+02 Score=24.05 Aligned_cols=52 Identities=19% Similarity=0.199 Sum_probs=33.9
Q ss_pred CCCCChhHHHHHHHHhcCCccEEEeccccchHHhcCCCCCCEEEec--CCcCccccCCCCcccch
Q psy11832 86 SFKPTPCHYFLKLLHQKNLLLRHFTQNIDNLERIAGLPDDKLVEAH--GSFHTSHCLTCRKDYSV 148 (494)
Q Consensus 86 ~~~Pn~~H~~La~L~~~~~~~~iiTQNIDgLh~kAG~~~~~v~elH--G~~~~~~C~~C~~~~~~ 148 (494)
...++..|+.|..|++.|.+..+-+.| + ...+++. ..-..+.|..|++.++.
T Consensus 32 ~i~~~TVYR~L~~L~~~Gli~~~~~~~--~---------~~~y~~~~~~~h~H~~C~~Cg~i~~~ 85 (116)
T cd07153 32 SISLATVYRTLELLEEAGLVREIELGD--G---------KARYELNTDEHHHHLICTKCGKVIDF 85 (116)
T ss_pred CCCHHHHHHHHHHHHhCCCEEEEEeCC--C---------ceEEEeCCCCCCCceEeCCCCCEEEe
Confidence 456677899999999999877664433 1 1233332 22346899999987653
No 192
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=23.52 E-value=50 Score=32.82 Aligned_cols=39 Identities=15% Similarity=0.215 Sum_probs=27.3
Q ss_pred eeeccCccceeecCCCCCccchHHHHhhhccCCCCCCccCCCCCC
Q psy11832 271 LVEAHGSFHTSHCLTCRKDYSVAWMKEGNLLGRMGITLGLHAGGL 315 (494)
Q Consensus 271 vvE~HGs~~~~~C~~C~~~y~~~~~~~~i~~~~~~~p~c~~C~g~ 315 (494)
|+.+-| ..|-.|+...+...+-.- .. ...+..||+||..
T Consensus 192 vvpl~g----~~C~GC~m~l~~~~~~~V-~~-~d~iv~CP~CgRI 230 (239)
T COG1579 192 VVPLEG----RVCGGCHMKLPSQTLSKV-RK-KDEIVFCPYCGRI 230 (239)
T ss_pred EEeecC----CcccCCeeeecHHHHHHH-hc-CCCCccCCccchH
Confidence 555555 569999999887765432 23 4567899999974
No 193
>KOG1465|consensus
Probab=23.11 E-value=90 Score=32.16 Aligned_cols=101 Identities=11% Similarity=0.077 Sum_probs=62.1
Q ss_pred ChHHHHHHHhHcCCCCeEEEeCcCCChhhhhhhhhhhhhcCCCceEEEEecccccc-cccc-cccccccccCCCCc-chh
Q psy11832 182 PSRYFHRVDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPKADLLLIMGTSLVV-QPFC-SLVDKTNIRGSDSD-NID 258 (494)
Q Consensus 182 ~~~~~~~a~~~~~~aDlllvvGTSl~V~pa~~lv~~~~~~~~~a~lv~IN~~p~~~-h~~a-~l~~~~~l~~v~TQ-NID 258 (494)
.+.+-.+|.+.+..-++++..|+|-+|.-|-....+- -++..++....-|... |-+| .|.++|.-..+||. -|=
T Consensus 149 ~E~Ia~Qa~ehihsnEviLT~g~SrTV~~FL~~A~kk---~Rkf~viVaE~~p~~qgH~~Ak~la~~giettVI~daaVf 225 (353)
T KOG1465|consen 149 RENIAVQAIEHIHSNEVILTLGSSRTVENFLKHAAKK---GRKFRVIVAEGAPNNQGHELAKPLAQAGIETTVIPDAAVF 225 (353)
T ss_pred hHhHHHHHHHHhccCceEEecCccHHHHHHHHHHHhc---cCceEEEEeecCCcccchHhhHHHHHcCCeeEEeccHHHH
Confidence 4456678888999999999999998877655443332 2444555556666666 7666 35555544344443 122
Q ss_pred hhhHhhCCCCCceeeccCccceeecCC-CCC
Q psy11832 259 NLERIAGLPDDKLVEAHGSFHTSHCLT-CRK 288 (494)
Q Consensus 259 ~Le~~AG~~~~~vvE~HGs~~~~~C~~-C~~ 288 (494)
.+-.+++ +-||=.|--|...-|.. ||.
T Consensus 226 A~MsrVn---KVIigt~avl~NGgl~~~~G~ 253 (353)
T KOG1465|consen 226 AMMSRVN---KVIIGTHAVLANGGLRAPSGV 253 (353)
T ss_pred HHhhhcc---eEEEEeeeEecCCCeeccchH
Confidence 2333333 45677777777776653 553
No 194
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=22.86 E-value=62 Score=25.09 Aligned_cols=47 Identities=17% Similarity=0.146 Sum_probs=27.7
Q ss_pred hhHhhCCCCCceeeccCccceeecCCCCCccchHHHHhhhccCCCCCCccCCCCC
Q psy11832 260 LERIAGLPDDKLVEAHGSFHTSHCLTCRKDYSVAWMKEGNLLGRMGITLGLHAGG 314 (494)
Q Consensus 260 Le~~AG~~~~~vvE~HGs~~~~~C~~C~~~y~~~~~~~~i~~~~~~~p~c~~C~g 314 (494)
|+.+|-.....|+++.=.+.+..|..||..... ......-.|+.|+-
T Consensus 8 L~yka~~~G~~v~~v~~~~TSq~C~~CG~~~~~--------~~~~r~~~C~~Cg~ 54 (69)
T PF07282_consen 8 LEYKAEEYGIQVVEVDEAYTSQTCPRCGHRNKK--------RRSGRVFTCPNCGF 54 (69)
T ss_pred HHHHHHHhCCEEEEECCCCCccCccCccccccc--------ccccceEEcCCCCC
Confidence 444443222467777666677889999986543 01112345888875
No 195
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=22.50 E-value=69 Score=36.05 Aligned_cols=64 Identities=19% Similarity=0.136 Sum_probs=37.0
Q ss_pred hcCCCCCCeEEEeccccccCCCCcchhhhcccCCC--CCCC----CCCcccEEEeCChhHHHHHHHHHhC
Q psy11832 337 ASAPPHCPRLLINKEKVGVGSRNPLMGLLGLSEGL--GFDN----ENNVRDVFLEGDCDSGCQKLADMLG 400 (494)
Q Consensus 337 ~~~~~~~Dlliv~GTSl~V~~~~P~a~l~~~~~g~--~~~~----~~~~~dl~i~g~~~~~~~~L~~~lg 400 (494)
.+.+.+||++|++||++.......+..+.....-. ..+. .....++.|.|++...+++|.+.+.
T Consensus 285 ~~~l~~aDlvL~vG~~~~~~~~~~~~~~~~~~~~i~id~d~~~ig~~~~~~~~i~~D~~~~l~~L~~~l~ 354 (616)
T PRK07418 285 NFAVTECDLLIAVGARFDDRVTGKLDEFASRAKVIHIDIDPAEVGKNRRPDVPIVGDVRKVLVKLLERSL 354 (616)
T ss_pred HHHHHhCCEEEEEcCCCCccccCChhhcCCCCeEEEEeCCHHHhCCccCCCeEEecCHHHHHHHHHHhhh
Confidence 44567899999999998641111111111100000 1111 1234689999999999999987663
No 196
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=22.20 E-value=81 Score=33.39 Aligned_cols=69 Identities=20% Similarity=0.327 Sum_probs=40.0
Q ss_pred ccccCCCCcccchHHHHHHHhhcCCCCCCCCCCeeee-eEEecCCCCChHHHHHHHhHcCCCCeEEEeCcCCChhhhhhh
Q psy11832 136 TSHCLTCRKDYSVAWMKERIFAEVIPTCEKCNGLVKP-DIVFFGENLPSRYFHRVDVDFPKADLLLIMGTSLVVQPFCSL 214 (494)
Q Consensus 136 ~~~C~~C~~~~~~~~~~~~i~~~~~P~C~~Cgg~lrP-~Vv~FgE~~~~~~~~~a~~~~~~aDlllvvGTSl~V~pa~~l 214 (494)
..+|..|+..+. .....-.+||.||+.+.- .-+|-|.-.+..+.++..+..++. .+||--.+.-.-.+
T Consensus 240 ~~~c~~cg~~~~-------~~~~~~~~c~~Cg~~~~~~GPlW~GpL~d~~f~e~~l~~~~~~----~l~~~~~~~klL~~ 308 (380)
T COG1867 240 IYHCSRCGEIVG-------SFREVDEKCPHCGGKVHLAGPLWLGPLHDEEFIEEMLEIAEGL----ELGTKKRALKLLKL 308 (380)
T ss_pred EEEcccccceec-------ccccccccCCcccccceeccCcccCcccCHHHHHHHHHHhhcc----ccccHHHHHHHHHH
Confidence 468999984321 112235689999984433 335666666666666665555443 66665554444444
Q ss_pred h
Q psy11832 215 V 215 (494)
Q Consensus 215 v 215 (494)
+
T Consensus 309 i 309 (380)
T COG1867 309 I 309 (380)
T ss_pred H
Confidence 4
No 197
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=22.17 E-value=74 Score=35.44 Aligned_cols=47 Identities=17% Similarity=0.149 Sum_probs=29.9
Q ss_pred HHHhHcCCCCeEEEeCcCCChhhhh-hh-hhhhhhcCCCceEEEEecccccc
Q psy11832 188 RVDVDFPKADLLLIMGTSLVVQPFC-SL-VDKVDVDFPKADLLLIMGTSLVV 237 (494)
Q Consensus 188 ~a~~~~~~aDlllvvGTSl~V~pa~-~l-v~~~~~~~~~a~lv~IN~~p~~~ 237 (494)
.+.+.+++||++|+|||++.-.... .. .... .+++++|.|+.+|...
T Consensus 255 ~~~~~l~~aDlil~lG~~~~~~~~~~~~~~~~~---~~~~~~I~id~d~~~~ 303 (579)
T TIGR03457 255 AAMKLISDADVVLALGTRLGPFGTLPQYGIDYW---PKNAKIIQVDANAKMI 303 (579)
T ss_pred HHHHHHHhCCEEEEECCCCcccccccccccccC---CCCCeEEEEeCCHHHh
Confidence 3556778999999999987632111 00 0111 2357889999888764
No 198
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=22.16 E-value=89 Score=34.89 Aligned_cols=41 Identities=17% Similarity=0.261 Sum_probs=29.3
Q ss_pred HHHhHcCCCCeEEEeCcCCChhhhhhhhhhhhhcCCCceEEEEeccccccc
Q psy11832 188 RVDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPKADLLLIMGTSLVVQ 238 (494)
Q Consensus 188 ~a~~~~~~aDlllvvGTSl~V~pa~~lv~~~~~~~~~a~lv~IN~~p~~~h 238 (494)
.+.+.+++||++|+|||++... .+ .++.++|.||.+|....
T Consensus 258 ~~~~~l~~aDlvl~lG~~~~~~-------~~---~~~~~~I~vd~d~~~~~ 298 (578)
T PRK06546 258 AAHEAMHEADLLILLGTDFPYD-------QF---LPDVRTAQVDIDPEHLG 298 (578)
T ss_pred HHHHHHHhCCEEEEEcCCCChh-------hc---CCCCcEEEEeCCHHHhC
Confidence 3455678999999999987521 12 35567899998887753
No 199
>KOG2462|consensus
Probab=22.10 E-value=59 Score=32.89 Aligned_cols=34 Identities=24% Similarity=0.369 Sum_probs=22.8
Q ss_pred eecCCCCCccchHHHHhh-hccCCC-CCCccCCCCC
Q psy11832 281 SHCLTCRKDYSVAWMKEG-NLLGRM-GITLGLHAGG 314 (494)
Q Consensus 281 ~~C~~C~~~y~~~~~~~~-i~~~~~-~~p~c~~C~g 314 (494)
..|.-|||.|+..|+.+. |-.... .+-.|++|+.
T Consensus 188 c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~k 223 (279)
T KOG2462|consen 188 CECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGK 223 (279)
T ss_pred cccccccccccchHHhhcccccccCCCCccCCcccc
Confidence 458899999999997543 322222 2345888875
No 200
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=22.06 E-value=69 Score=38.21 Aligned_cols=44 Identities=18% Similarity=0.430 Sum_probs=0.0
Q ss_pred ccCCCCcccchHHHHHHHhhcCCCCCCCCCCeeeeeEEecCCCCChH--HHHHHHhHcCCCCeEEE
Q psy11832 138 HCLTCRKDYSVAWMKERIFAEVIPTCEKCNGLVKPDIVFFGENLPSR--YFHRVDVDFPKADLLLI 201 (494)
Q Consensus 138 ~C~~C~~~~~~~~~~~~i~~~~~P~C~~Cgg~lrP~Vv~FgE~~~~~--~~~~a~~~~~~aDlllv 201 (494)
+|..|++++... .+.||.||+. ++.+. ..+...+.+.++|-+++
T Consensus 696 rC~dcg~q~~~~----------~~~cP~Cgs~----------~v~d~~~~ve~lRelA~EvDeVlI 741 (1187)
T COG1110 696 RCRDCGEQFVDS----------EDKCPRCGSR----------NVEDKTETVEALRELALEVDEILI 741 (1187)
T ss_pred HHhhcCceeccc----------cccCCCCCCc----------cccccHHHHHHHHHHHhhcCEEEE
No 201
>PF05265 DUF723: Protein of unknown function (DUF723); InterPro: IPR007929 This family contains several uncharacterised proteins from Neisseria meningitidis. These proteins may have a role in DNA binding.
Probab=21.96 E-value=1.3e+02 Score=23.45 Aligned_cols=43 Identities=23% Similarity=0.369 Sum_probs=25.9
Q ss_pred CCCCCEEEecCCcC--ccccCCCCcccchHHHHHHHhhcCCCCCCCCC
Q psy11832 122 LPDDKLVEAHGSFH--TSHCLTCRKDYSVAWMKERIFAEVIPTCEKCN 167 (494)
Q Consensus 122 ~~~~~v~elHG~~~--~~~C~~C~~~~~~~~~~~~i~~~~~P~C~~Cg 167 (494)
||...++|.+|... ..+|..-+....... ..-+.++ --||.||
T Consensus 16 Fp~~slvef~g~~~PvtI~CP~HG~~~~s~~-~~~~~sk--~GCP~Cg 60 (60)
T PF05265_consen 16 FPHYSLVEFSGVATPVTIRCPKHGNFTCSTF-NSFIKSK--HGCPECG 60 (60)
T ss_pred CCCceEEEEeCCCCceEEECCCCCcEEeccH-Hhhhhhc--cCCCCCC
Confidence 45678999999986 668887666432221 1111122 2499986
No 202
>PF02233 PNTB: NAD(P) transhydrogenase beta subunit; InterPro: IPR012136 NAD(P) transhydrogenase catalyses the transfer of reducing equivalents between NAD(H) and NADP(H), coupled to the translocation of protons across a membrane []. It is an integral membrane protein found in most organisms except for yeasts, plants and some bacterial species. In bacterial species it is located in the cytoplasmic membrane, while in mitochondria it is located in the inner membrane. Under most physiological conditions this enzyme synthesises NADPH, driven by consumption of the proton electrochemical gradient. The resulting NADPH is subsequently used for biosynthetic reactions or the reduction of glutathione. The global structure of this enzyme is similar in all organisms, consisting of three distinct domains, though the polypeptide composition can vary. Domain I binds NAD(+)/NADH, domain II is a hydrophobic membrane-spanning domain, and domain III binds NADP(+)/NADPH. Domain I is composed of two subdomains, both of which form a Rossman fold, while domain III consists of a single Rossman fold where the NADP(+) is flipped relative to the normal orientation of bound nucleotides within the Rossman fold [, , ]. Several residues within these domains are thought to make functionally important interdomain contacts for hydride transfer between these domains []. Proton translocation occurs through domain II and is thought to induce conformational changes which are transmitted across domain III to the site of hydride transfer between domains I and III. This entry represents the beta subunit found in bacterial two-subunit NADP(H) transhydrogenases. This subunit forms domain III and part of the transmembrane domain II. ; GO: 0008750 NAD(P)+ transhydrogenase (AB-specific) activity, 0050661 NADP binding, 0055114 oxidation-reduction process, 0016021 integral to membrane; PDB: 1PT9_A 1DJL_A 1U31_B 2BRU_C 1PTJ_C 1HZZ_C 2FRD_C 2FSV_C 1XLT_C 1U2G_C ....
Probab=21.95 E-value=1.1e+02 Score=33.35 Aligned_cols=29 Identities=17% Similarity=0.022 Sum_probs=21.1
Q ss_pred HHhhhcCCCCCCeEEEeccccccCCCCcchhh
Q psy11832 333 GVHSASAPPHCPRLLINKEKVGVGSRNPLMGL 364 (494)
Q Consensus 333 ~~~~~~~~~~~Dlliv~GTSl~V~~~~P~a~l 364 (494)
++.+..+++++|+.||+|..=+| .|+|.-
T Consensus 373 mdeiN~~f~~~Dv~lViGANDvV---NPaA~~ 401 (463)
T PF02233_consen 373 MDEINPDFPDTDVVLVIGANDVV---NPAARE 401 (463)
T ss_dssp HHHHGGGGGG-SEEEEES-SGGG----CHHCC
T ss_pred hhhcccchhcCCEEEEecccccc---Cchhcc
Confidence 45667789999999999999999 666644
No 203
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=21.86 E-value=93 Score=34.65 Aligned_cols=65 Identities=12% Similarity=0.059 Sum_probs=37.6
Q ss_pred hhcCCCCCCeEEEeccccccCCCCcchhhhcccCC--CCCCC----CCCcccEEEeCChhHHHHHHHHHhC
Q psy11832 336 SASAPPHCPRLLINKEKVGVGSRNPLMGLLGLSEG--LGFDN----ENNVRDVFLEGDCDSGCQKLADMLG 400 (494)
Q Consensus 336 ~~~~~~~~Dlliv~GTSl~V~~~~P~a~l~~~~~g--~~~~~----~~~~~dl~i~g~~~~~~~~L~~~lg 400 (494)
+.+.+.+||++|++|+++..........+.....- +..+. .....|+.|.|++...++.|.+.+.
T Consensus 266 ~~~~~~~aD~vl~vG~~~~~~~~~~~~~~~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~ 336 (572)
T PRK08979 266 ANMAMHNADLIFGIGVRFDDRTTNNLEKYCPNATILHIDIDPSSISKTVRVDIPIVGSADKVLDSMLALLD 336 (572)
T ss_pred HHHHHHhCCEEEEEcCCCCccccCchhhcCCCCeEEEEECCHHHhCCccCCceEEecCHHHHHHHHHHhhh
Confidence 34456789999999999865211111111100000 01110 1234689999999999999987664
No 204
>PRK08617 acetolactate synthase; Reviewed
Probab=21.63 E-value=78 Score=35.00 Aligned_cols=46 Identities=17% Similarity=0.064 Sum_probs=30.4
Q ss_pred HHhHcCCCCeEEEeCcCCChhhhhhhhhhhhhcCCCceEEEEecccccccc
Q psy11832 189 VDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPKADLLLIMGTSLVVQP 239 (494)
Q Consensus 189 a~~~~~~aDlllvvGTSl~V~pa~~lv~~~~~~~~~a~lv~IN~~p~~~h~ 239 (494)
+.+.+++||++|++||++.-+....+. . .++.++|.|+.+|....+
T Consensus 262 ~~~~~~~aDlvl~lG~~~~~~~~~~~~--~---~~~~~~i~id~d~~~~~~ 307 (552)
T PRK08617 262 GDELLKKADLVITIGYDPIEYEPRNWN--S---EGDATIIHIDVLPAEIDN 307 (552)
T ss_pred HHHHHHhCCEEEEecCccccccccccc--c---CCCCcEEEEeCChHHhCC
Confidence 445678999999999987543322111 1 235678999988877543
No 205
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=21.60 E-value=85 Score=34.76 Aligned_cols=49 Identities=18% Similarity=0.190 Sum_probs=31.4
Q ss_pred HHHhHcCCCCeEEEeCcCCChhhhhhhhhhhhhcCCCceEEEEecccccc
Q psy11832 188 RVDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPKADLLLIMGTSLVV 237 (494)
Q Consensus 188 ~a~~~~~~aDlllvvGTSl~V~pa~~lv~~~~~~~~~a~lv~IN~~p~~~ 237 (494)
.+.+.+++||++|++|+++.-.+...+.... ...+..++|.|+.+|...
T Consensus 263 ~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~-~~~~~~~~i~vd~d~~~~ 311 (557)
T PRK08199 263 ALAARIREADLVLAVGTRLGEVTTQGYTLLD-IPVPRQTLVHVHPDAEEL 311 (557)
T ss_pred HHHHHHHhCCEEEEeCCCCcccccccccccc-ccCCCCeEEEEeCCHHHh
Confidence 3455678999999999998665543321111 012456788888877653
No 206
>PRK07064 hypothetical protein; Provisional
Probab=21.59 E-value=75 Score=34.97 Aligned_cols=45 Identities=18% Similarity=0.208 Sum_probs=31.1
Q ss_pred HHHhHcCCCCeEEEeCcCCChhhhhhhhhhhhhcCCCceEEEEecccccc
Q psy11832 188 RVDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPKADLLLIMGTSLVV 237 (494)
Q Consensus 188 ~a~~~~~~aDlllvvGTSl~V~pa~~lv~~~~~~~~~a~lv~IN~~p~~~ 237 (494)
.+.+.+++||++|+|||++.-.+...+. . .++.++|.|+.+|...
T Consensus 257 ~~~~~~~~aDlvl~iG~~~~~~~~~~~~--~---~~~~~~i~id~d~~~~ 301 (544)
T PRK07064 257 AVEALYKTCDLLLVVGSRLRGNETLKYS--L---ALPRPLIRVDADAAAD 301 (544)
T ss_pred HHHHHHHhCCEEEEecCCCCcccccccc--c---CCCCceEEEeCCHHHh
Confidence 3556778999999999988765543321 1 1235788888887764
No 207
>PRK09462 fur ferric uptake regulator; Provisional
Probab=21.39 E-value=2.2e+02 Score=25.55 Aligned_cols=52 Identities=15% Similarity=0.238 Sum_probs=33.8
Q ss_pred CCCCChhHHHHHHHHhcCCccEEEeccccchHHhcCCCCCCEEEec--CCcCccccCCCCcccch
Q psy11832 86 SFKPTPCHYFLKLLHQKNLLLRHFTQNIDNLERIAGLPDDKLVEAH--GSFHTSHCLTCRKDYSV 148 (494)
Q Consensus 86 ~~~Pn~~H~~La~L~~~~~~~~iiTQNIDgLh~kAG~~~~~v~elH--G~~~~~~C~~C~~~~~~ 148 (494)
+..+...|+.|..|++.|.+..+-..| | ...+++. +.-..+.|..|++..+.
T Consensus 49 ~i~~aTVYR~L~~L~e~Gli~~~~~~~--~---------~~~y~~~~~~~H~H~iC~~Cg~i~~i 102 (148)
T PRK09462 49 EIGLATVYRVLNQFDDAGIVTRHNFEG--G---------KSVFELTQQHHHDHLICLDCGKVIEF 102 (148)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEEcCC--C---------cEEEEeCCCCCCCceEECCCCCEEEe
Confidence 445677899999999998876665443 1 1233332 12245889999987543
No 208
>COG1545 Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]
Probab=20.94 E-value=68 Score=29.10 Aligned_cols=28 Identities=18% Similarity=0.332 Sum_probs=20.9
Q ss_pred CccceeecCCCCCccchHHHHhhhccCCCCCCccCCCCCC
Q psy11832 276 GSFHTSHCLTCRKDYSVAWMKEGNLLGRMGITLGLHAGGL 315 (494)
Q Consensus 276 Gs~~~~~C~~C~~~y~~~~~~~~i~~~~~~~p~c~~C~g~ 315 (494)
|-+--.+|.+||+.|- .|...|+.|+..
T Consensus 25 ~kl~g~kC~~CG~v~~------------PPr~~Cp~C~~~ 52 (140)
T COG1545 25 GKLLGTKCKKCGRVYF------------PPRAYCPKCGSE 52 (140)
T ss_pred CcEEEEEcCCCCeEEc------------CCcccCCCCCCC
Confidence 6677789999999762 344568999874
No 209
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=20.88 E-value=94 Score=34.69 Aligned_cols=48 Identities=19% Similarity=0.178 Sum_probs=34.0
Q ss_pred HHHHhHcCCCCeEEEeCcCCChhhhhhhhhhhhhcCCCceEEEEecccccccc
Q psy11832 187 HRVDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPKADLLLIMGTSLVVQP 239 (494)
Q Consensus 187 ~~a~~~~~~aDlllvvGTSl~V~pa~~lv~~~~~~~~~a~lv~IN~~p~~~h~ 239 (494)
..+...+++||++|+|||.+.=.+.. +.... +...+|.|+-+|+..-+
T Consensus 258 ~~a~~~~~~aDlll~vG~rf~~~~~~-~~~f~----~~~~ii~iDidp~ei~k 305 (550)
T COG0028 258 KAANEALEEADLLLAVGARFDDRVTG-YSGFA----PPAAIIHIDIDPAEIGK 305 (550)
T ss_pred HHHHHHhhcCCEEEEecCCCcccccc-hhhhC----CcCCEEEEeCChHHhCC
Confidence 45667788999999999998865555 33333 33228888888877654
No 210
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=20.86 E-value=87 Score=23.27 Aligned_cols=35 Identities=14% Similarity=0.083 Sum_probs=23.5
Q ss_pred eeecCCCCCccchHHHHhhhccCC---CCCCccCCCCC
Q psy11832 280 TSHCLTCRKDYSVAWMKEGNLLGR---MGITLGLHAGG 314 (494)
Q Consensus 280 ~~~C~~C~~~y~~~~~~~~i~~~~---~~~p~c~~C~g 314 (494)
+..|+-|++.++...+.+.+...- ...-.||-|..
T Consensus 2 ~f~CP~C~~~~~~~~L~~H~~~~H~~~~~~v~CPiC~~ 39 (54)
T PF05605_consen 2 SFTCPYCGKGFSESSLVEHCEDEHRSESKNVVCPICSS 39 (54)
T ss_pred CcCCCCCCCccCHHHHHHHHHhHCcCCCCCccCCCchh
Confidence 457999999888888877764321 12244777764
No 211
>PLN02470 acetolactate synthase
Probab=20.84 E-value=93 Score=34.76 Aligned_cols=64 Identities=17% Similarity=0.088 Sum_probs=37.1
Q ss_pred hcCCCCCCeEEEeccccccCCCCcchhhhcccCCC--CCCC----CCCcccEEEeCChhHHHHHHHHHhC
Q psy11832 337 ASAPPHCPRLLINKEKVGVGSRNPLMGLLGLSEGL--GFDN----ENNVRDVFLEGDCDSGCQKLADMLG 400 (494)
Q Consensus 337 ~~~~~~~Dlliv~GTSl~V~~~~P~a~l~~~~~g~--~~~~----~~~~~dl~i~g~~~~~~~~L~~~lg 400 (494)
...+.+||++|++|+++......+...+.....-. ..+. .....++.|.|++...+..|.+.+.
T Consensus 274 ~~~~~~aDlvl~lG~~l~~~~~~~~~~~~~~~~~I~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~ 343 (585)
T PLN02470 274 NYAVDSADLLLAFGVRFDDRVTGKLEAFASRASIVHIDIDPAEIGKNKQPHVSVCADVKLALQGLNKLLE 343 (585)
T ss_pred HHHHHhCCEEEEECCCCcccccCChhhcCCCCeEEEEECCHHHhCCCcCCCeEEecCHHHHHHHHHHhhh
Confidence 35567899999999998641111111111111000 1111 1124688999999999999987664
No 212
>cd02766 MopB_3 The MopB_3 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=20.73 E-value=91 Score=34.12 Aligned_cols=51 Identities=16% Similarity=0.198 Sum_probs=35.5
Q ss_pred HhHcCCCCeEEEeCcCCCh-hh-hhhhhhhhhhcCCCceEEEEeccccccccccc
Q psy11832 190 DVDFPKADLLLIMGTSLVV-QP-FCSLVDKVDVDFPKADLLLIMGTSLVVQPFCS 242 (494)
Q Consensus 190 ~~~~~~aDlllvvGTSl~V-~p-a~~lv~~~~~~~~~a~lv~IN~~p~~~h~~a~ 242 (494)
...+.++|++|++|+.... .| ....+..+ ...++++|.|+-..+.+-..|.
T Consensus 152 ~~d~~~ad~il~~G~Np~~s~p~~~~~~~~a--~~~GaklivvDPr~t~ta~~Ad 204 (501)
T cd02766 152 PEDMVNADLIVIWGINPAATNIHLMRIIQEA--RKRGAKVVVIDPYRTATAARAD 204 (501)
T ss_pred HHHHhcCCEEEEECCChhhhchhHHHHHHHH--HHCCCEEEEECCCCCccHHHhC
Confidence 3467899999999986554 33 22333344 3578999999988888765553
No 213
>PF02150 RNA_POL_M_15KD: RNA polymerases M/15 Kd subunit; InterPro: IPR001529 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. In archaebacteria, there is generally a single form of RNA polymerase which also consist of an oligomeric assemblage of 10 to 13 polypeptides. It has recently been shown [], [] that small subunits of about 15 kDa, found in polymerase types I and II, are highly conserved. These proteins contain a probable zinc finger in their N-terminal region and a C-terminal zinc ribbon domain (see IPR001222 from INTERPRO).; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3H0G_I 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I ....
Probab=20.71 E-value=50 Score=22.66 Aligned_cols=11 Identities=36% Similarity=1.099 Sum_probs=6.6
Q ss_pred CCCCCCeeeee
Q psy11832 163 CEKCNGLVKPD 173 (494)
Q Consensus 163 C~~Cgg~lrP~ 173 (494)
||.||.+|.|.
T Consensus 4 Cp~C~nlL~p~ 14 (35)
T PF02150_consen 4 CPECGNLLYPK 14 (35)
T ss_dssp ETTTTSBEEEE
T ss_pred CCCCCccceEc
Confidence 66666666553
No 214
>KOG4718|consensus
Probab=20.57 E-value=67 Score=31.30 Aligned_cols=31 Identities=19% Similarity=0.509 Sum_probs=20.9
Q ss_pred cccCCCCcccchHHHHHHHhhcCCCCCCCCCCe
Q psy11832 137 SHCLTCRKDYSVAWMKERIFAEVIPTCEKCNGL 169 (494)
Q Consensus 137 ~~C~~C~~~~~~~~~~~~i~~~~~P~C~~Cgg~ 169 (494)
.+|-+|+-+|....+..... ..|+||+||..
T Consensus 195 ~rCg~c~i~~h~~c~qty~q--~~~~cphc~d~ 225 (235)
T KOG4718|consen 195 IRCGSCNIQYHRGCIQTYLQ--RRDICPHCGDL 225 (235)
T ss_pred eccCcccchhhhHHHHHHhc--ccCcCCchhcc
Confidence 46888887776655544333 37899999753
No 215
>PRK08611 pyruvate oxidase; Provisional
Probab=20.36 E-value=96 Score=34.59 Aligned_cols=42 Identities=21% Similarity=0.210 Sum_probs=28.8
Q ss_pred HHHhHcCCCCeEEEeCcCCChhhhhhhhhhhhhcCCCceEEEEeccccccc
Q psy11832 188 RVDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPKADLLLIMGTSLVVQ 238 (494)
Q Consensus 188 ~a~~~~~~aDlllvvGTSl~V~pa~~lv~~~~~~~~~a~lv~IN~~p~~~h 238 (494)
.+.+.++++|++|+|||++.... + . -++.++|.|+.+|....
T Consensus 260 ~a~~~l~~aDlvl~iG~~~~~~~---~---~---~~~~~~i~id~d~~~i~ 301 (576)
T PRK08611 260 PAYEAMQEADLLIMVGTNYPYVD---Y---L---PKKAKAIQIDTDPANIG 301 (576)
T ss_pred HHHHHHHhCCEEEEeCCCCCccc---c---C---CCCCcEEEEeCCHHHcC
Confidence 34566789999999999874321 1 1 12367899998887653
No 216
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=20.20 E-value=84 Score=35.20 Aligned_cols=64 Identities=19% Similarity=0.163 Sum_probs=36.8
Q ss_pred hhcCCCCCCeEEEeccccccCCCCcc---hhhhccc-CCCCCCCCCCcccEEEeCChhHHHHHHHHHhC
Q psy11832 336 SASAPPHCPRLLINKEKVGVGSRNPL---MGLLGLS-EGLGFDNENNVRDVFLEGDCDSGCQKLADMLG 400 (494)
Q Consensus 336 ~~~~~~~~Dlliv~GTSl~V~~~~P~---a~l~~~~-~g~~~~~~~~~~dl~i~g~~~~~~~~L~~~lg 400 (494)
+.+.+++||++|++||++....+.+. +.++... ....... ....++.|.+++...+++|.+.+.
T Consensus 266 a~~~~~~aDlvl~lG~~~~~~~~~~~~~~~~~i~Id~d~~~~~~-~~~~~~~i~~D~~~~l~~L~~~l~ 333 (597)
T PRK08273 266 SYELMRECDTLLMVGSSFPYSEFLPKEGQARGVQIDIDGRMLGL-RYPMEVNLVGDAAETLRALLPLLE 333 (597)
T ss_pred HHHHHHhCCEEEEeCCCCCHHhcCCCCCCCeEEEEeCCHHHcCC-CCCCCceEecCHHHHHHHHHHhhh
Confidence 34457789999999999753111110 1111100 0001111 123578899999999999987664
No 217
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=20.07 E-value=1e+02 Score=34.21 Aligned_cols=65 Identities=12% Similarity=0.133 Sum_probs=37.2
Q ss_pred hhcCCCCCCeEEEeccccccCCCCcchhhhcccCCC--CCCC----CCCcccEEEeCChhHHHHHHHHHhC
Q psy11832 336 SASAPPHCPRLLINKEKVGVGSRNPLMGLLGLSEGL--GFDN----ENNVRDVFLEGDCDSGCQKLADMLG 400 (494)
Q Consensus 336 ~~~~~~~~Dlliv~GTSl~V~~~~P~a~l~~~~~g~--~~~~----~~~~~dl~i~g~~~~~~~~L~~~lg 400 (494)
+.+.+.+||++|++||++..........+.....-. ..+. .....|+.|.|++...+.+|.+.+.
T Consensus 266 ~~~~l~~aDlvl~vG~~~~~~~~~~~~~~~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~ 336 (574)
T PRK07979 266 ANMTMHNADVIFAVGVRFDDRTTNNLAKYCPNATVLHIDIDPTSISKTVTADIPIVGDARQVLEQMLELLS 336 (574)
T ss_pred HHHHHHhCCEEEEeCCCCcccccCChhhcCCCCeEEEEECCHHHhCCcccCCeEEecCHHHHHHHHHHhhh
Confidence 345667899999999998652110000011000000 1110 0124689999999999999977664
No 218
>PRK06154 hypothetical protein; Provisional
Probab=20.02 E-value=92 Score=34.68 Aligned_cols=63 Identities=13% Similarity=-0.046 Sum_probs=36.7
Q ss_pred hhcCCCCCCeEEEeccccccCCCCcchhhhcccC--CCCCCC----CCCcccEEEeCChhHHHHHHHHHhC
Q psy11832 336 SASAPPHCPRLLINKEKVGVGSRNPLMGLLGLSE--GLGFDN----ENNVRDVFLEGDCDSGCQKLADMLG 400 (494)
Q Consensus 336 ~~~~~~~~Dlliv~GTSl~V~~~~P~a~l~~~~~--g~~~~~----~~~~~dl~i~g~~~~~~~~L~~~lg 400 (494)
+.+.+.+||++|++|+++.-....+ .+..... -++.+. .....++.|.|++...++.|.+.+.
T Consensus 274 ~~~~~~~aDlvL~lG~~l~~~~~~~--~~~~~~~vI~id~d~~~~~~~~~~~~~i~~D~~~~L~~L~~~l~ 342 (565)
T PRK06154 274 VAHFLREADVLFGIGCSLTRSYYGL--PMPEGKTIIHSTLDDADLNKDYPIDHGLVGDAALVLKQMIEELR 342 (565)
T ss_pred HHHHHHhCCEEEEECCCCcccccCc--cCCCCCeEEEEECCHHHhccccCCCeeEEcCHHHHHHHHHHHhh
Confidence 3455778999999999987411111 0110000 001111 0124678899999999999977653
Done!