RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11832
(494 letters)
>gnl|CDD|238699 cd01408, SIRT1, SIRT1: Eukaryotic group (class1) which includes
human sirtuins SIRT1-3 and yeast Hst1-4; and are members
of the SIR2 family of proteins, silent information
regulator 2 (Sir2) enzymes which catalyze NAD+-dependent
protein/histone deacetylation. Sir2 proteins have been
shown to regulate gene silencing, DNA repair, and life
span. The most-studied function, gene silencing,
involves the inactivation of chromosome domains
containing key regulatory genes by packaging them into a
specialized chromatin structure that is inaccessible to
DNA-binding proteins. The nuclear SIRT1 has been shown
to target the p53 tumor suppressor protein for
deacetylation to suppress DNA damage, and the
cytoplasmic SIRT2 homolog has been shown to target
alpha-tubulin for deacetylation for the maintenance of
cell integrity.
Length = 235
Score = 311 bits (798), Expect = e-104
Identities = 115/227 (50%), Positives = 151/227 (66%), Gaps = 33/227 (14%)
Query: 4 AAGIPDFRSPGSGLYDNLEKYKLPHPMAIFELDYFKHRPEAFYTLAKELYPGSFKPTPCH 63
+AGIPDFRSPG+GLY NL +Y LP+P A+F++ YF+ P FY LAKELYPG FKP+ H
Sbjct: 14 SAGIPDFRSPGTGLYANLARYNLPYPEAMFDISYFRKNPRPFYALAKELYPGQFKPSVAH 73
Query: 64 YFLKLLHQKNLLLRHFTQVYWGSFKPTPCHYFLKLLHQKNLLLRHFTQNIDNLERIAGLP 123
YF+KLL K LLLR++TQ NID LER+AG+P
Sbjct: 74 YFIKLLEDKGLLLRNYTQ------------------------------NIDTLERVAGVP 103
Query: 124 DDKLVEAHGSFHTSHCLTCRKDYSVAWMKERIFAEVIPTCEKCNGLVKPDIVFFGENLPS 183
DD+++EAHGSF T+HC+ C+ Y WM+E IF + +P C +C GLVKPDIVFFGE+LPS
Sbjct: 104 DDRIIEAHGSFATAHCIKCKHKYPGDWMREDIFNQEVPKCPRCGGLVKPDIVFFGESLPS 163
Query: 184 RYFHRVDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPKADLLLI 230
R+F ++ D +ADLL+++GTSL V PF SL +V + P+ +LI
Sbjct: 164 RFFSHMEEDKEEADLLIVIGTSLKVAPFASLPSRVPSEVPR---VLI 207
Score = 95.8 bits (239), Expect = 2e-22
Identities = 52/165 (31%), Positives = 71/165 (43%), Gaps = 46/165 (27%)
Query: 256 NIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDYSVAWMKEGNLLGRM----------- 304
NID LER+AG+PDD+++EAHGSF T+HC+ C+ Y WM+E +
Sbjct: 92 NIDTLERVAGVPDDRIIEAHGSFATAHCIKCKHKYPGDWMREDIFNQEVPKCPRCGGLVK 151
Query: 305 -GITL---GLHAGGLSSIPGGAEVFSALCLEFG----VHSAS-----APPHCPRLLINKE 351
I L + S + E L + G V + P PR+LIN+E
Sbjct: 152 PDIVFFGESLPSRFFSHMEEDKEEAD-LLIVIGTSLKVAPFASLPSRVPSEVPRVLINRE 210
Query: 352 KVG-VGSRNPLMGLLGLSEGLGFDNENNVRDVFLEGDCDSGCQKL 395
VG +G R DV L GDCD G ++L
Sbjct: 211 PVGHLGKRP--------------------FDVALLGDCDDGVREL 235
>gnl|CDD|238698 cd01407, SIR2-fam, SIR2 family of proteins includes silent
information regulator 2 (Sir2) enzymes which catalyze
NAD+-dependent protein/histone deacetylation, where the
acetyl group from the lysine epsilon-amino group is
transferred to the ADP-ribose moiety of NAD+, producing
nicotinamide and the novel metabolite
O-acetyl-ADP-ribose. Sir2 proteins, also known as
sirtuins, are found in all eukaryotes and many archaea
and prokaryotes and have been shown to regulate gene
silencing, DNA repair, metabolic enzymes, and life span.
The most-studied function, gene silencing, involves the
inactivation of chromosome domains containing key
regulatory genes by packaging them into a specialized
chromatin structure that is inaccessible to DNA-binding
proteins. The oligomerization state of Sir2 appears to
be organism-dependent, sometimes occurring as a monomer
and sometimes as a multimer.
Length = 218
Score = 216 bits (552), Expect = 1e-67
Identities = 75/215 (34%), Positives = 100/215 (46%), Gaps = 38/215 (17%)
Query: 4 AAGIPDFRSPGSGLYDNLEKYKLPHPMAIFELDYFKHRPEAFYTLAKELYPGSFKPTPCH 63
+GIPDFRSPG GL+ L+ +L F + F+ PE F+ +E
Sbjct: 14 ESGIPDFRSPG-GLWARLDPEELA-----FSPEAFRRDPELFWGFYRERR---------- 57
Query: 64 YFLKLLHQKNLLLRHFTQVYWGSFKPTPCHYFLKLLHQKNLLLRHFTQNIDNLERIAGLP 123
Y + +P P H L L +K L R TQN+D L + AG P
Sbjct: 58 -------------------YPLNAQPNPAHRALAELERKGKLKRVITQNVDGLHQRAGSP 98
Query: 124 DDKLVEAHGSFHTSHCLTCRKDYSVAWMKERIFAEVIPTCEKCNGLVKPDIVFFGENLPS 183
K++E HGS C C K+Y ++ I E +P C KC GL++PD+VFFGE+LP
Sbjct: 99 --KVIELHGSLFRVRCTKCGKEYPRDELQADIDREEVPRCPKCGGLLRPDVVFFGESLPE 156
Query: 184 RYFHRVDVDFPKADLLLIMGTSLVVQPFCSLVDKV 218
KADLLL++GTSL V P L
Sbjct: 157 E-LDEAAEALAKADLLLVIGTSLQVYPAAGLPLYA 190
Score = 56.0 bits (136), Expect = 6e-09
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 256 NIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDYSVAWMKE 297
N+D L + AG P K++E HGS C C K+Y ++
Sbjct: 87 NVDGLHQRAGSP--KVIELHGSLFRVRCTKCGKEYPRDELQA 126
>gnl|CDD|216902 pfam02146, SIR2, Sir2 family. This region is characteristic of
Silent information regulator 2 (Sir2) proteins, or
sirtuins. These are protein deacetylases that depend on
nicotine adenine dinucleotide (NAD). They are found in
many subcellular locations, including the nucleus,
cytoplasm and mitochondria. Eukaryotic forms play in
important role in the regulation of transcriptional
repression. Moreover, they are involved in microtubule
organisation and DNA damage repair processes.
Length = 177
Score = 206 bits (527), Expect = 1e-64
Identities = 89/207 (42%), Positives = 110/207 (53%), Gaps = 36/207 (17%)
Query: 4 AAGIPDFRSPGSGLYDNLEKYKLPHPMAIFELDYFKHRPEAFYTLAKELYPGSFKPTPCH 63
+GIPDFRS GLY L K +L P A F Y P FY +A+EL PG +P P H
Sbjct: 7 ESGIPDFRSDD-GLYAKLAKEELASPEAFFSNPYLVWDP--FYNIARELLPGPAQPNPAH 63
Query: 64 YFLKLLHQKNLLLRHFTQVYWGSFKPTPCHYFLKLLHQKNLLLRHFTQNIDNLERIAGLP 123
YF+ L + K LLR TQNID L AG
Sbjct: 64 YFIAEL-ED-----------------------------KGKLLRLITQNIDGLHERAGSK 93
Query: 124 DDKLVEAHGSFHTSHCLTCRKDYSVAWMKERIFAEVIPTCEKCNGLVKPDIVFFGENLPS 183
K+VE HGSF + C++C K Y+ + ERI A +P C+KC GL+KPDIVFFGENLP
Sbjct: 94 --KVVELHGSFAKARCVSCHKKYTGETLPERIDAAKVPKCDKCGGLLKPDIVFFGENLPD 151
Query: 184 RYFHRVDVDFPKADLLLIMGTSLVVQP 210
+ F R D +ADLL+++GTSL V P
Sbjct: 152 K-FFRAYEDVEEADLLIVIGTSLKVYP 177
Score = 54.2 bits (131), Expect = 1e-08
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 256 NIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDYSVAWMKE 297
NID L AG K+VE HGSF + C++C K Y+ + E
Sbjct: 82 NIDGLHERAGSK--KVVELHGSFAKARCVSCHKKYTGETLPE 121
>gnl|CDD|238184 cd00296, SIR2, SIR2 superfamily of proteins includes silent
information regulator 2 (Sir2) enzymes which catalyze
NAD+-dependent protein/histone deacetylation, where the
acetyl group from the lysine epsilon-amino group is
transferred to the ADP-ribose moiety of NAD+, producing
nicotinamide and the novel metabolite
O-acetyl-ADP-ribose. Sir2 proteins, also known as
sirtuins, are found in all eukaryotes and many archaea
and prokaryotes and have been shown to regulate gene
silencing, DNA repair, metabolic enzymes, and life span.
The most-studied function, gene silencing, involves the
inactivation of chromosome domains containing key
regulatory genes by packaging them into a specialized
chromatin structure that is inaccessible to DNA-binding
proteins. The oligomerization state of Sir2 appears to
be organism-dependent, sometimes occurring as a monomer
and sometimes as a multimer. Also included in this
superfamily is a group of uncharacterized Sir2-like
proteins which lack certain key catalytic residues and
conserved zinc binding cysteines.
Length = 222
Score = 201 bits (512), Expect = 1e-61
Identities = 72/215 (33%), Positives = 99/215 (46%), Gaps = 36/215 (16%)
Query: 4 AAGIPDFRSPGSGLYDNLEKYKLPHPMAIFELDYFKHRPEAFYTLAKELYPGSFKPTPCH 63
+GIPDFR G+GL+ L+ +L F + F+ PE F+ KE
Sbjct: 14 ESGIPDFRGLGTGLWTRLDPEELA-----FSPEAFRRDPELFWLFYKERRYTPLD----- 63
Query: 64 YFLKLLHQKNLLLRHFTQVYWGSFKPTPCHYFLKLLHQKNLLLRHFTQNIDNLERIAGLP 123
KP P H L L +K L R TQN+D L AG
Sbjct: 64 -----------------------AKPNPAHRALAELERKGKLKRIITQNVDGLHERAGSR 100
Query: 124 DDKLVEAHGSFHTSHCLTCRKDYSVAWMKERIFAEVIPTCEKCNGLVKPDIVFFGENLPS 183
++++E HGS C +C K+Y + ER E P C KC GL++PD+V FGE LP
Sbjct: 101 RNRVIELHGSLDRVRCTSCGKEYPRDEVLER---EKPPRCPKCGGLLRPDVVDFGEALPK 157
Query: 184 RYFHRVDVDFPKADLLLIMGTSLVVQPFCSLVDKV 218
+F R +ADL+L++GTSL V P L+ +
Sbjct: 158 EWFDRALEALLEADLVLVIGTSLTVYPAARLLLRA 192
Score = 56.2 bits (136), Expect = 6e-09
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 256 NIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDYSVAWMKE 297
N+D L AG ++++E HGS C +C K+Y + E
Sbjct: 89 NVDGLHERAGSRRNRVIELHGSLDRVRCTSCGKEYPRDEVLE 130
>gnl|CDD|185600 PTZ00410, PTZ00410, NAD-dependent SIR2; Provisional.
Length = 349
Score = 192 bits (488), Expect = 1e-56
Identities = 97/223 (43%), Positives = 124/223 (55%), Gaps = 33/223 (14%)
Query: 4 AAGIPDFRSPGSGLYDNLEKYKLPHPMAIFELDYFKHRPEAFYTLAKE--LYPGSFKPTP 61
AAGIPDFRSP +G+Y L KY L P F L + +PE FY++A+E L+PG F+PT
Sbjct: 43 AAGIPDFRSPHTGIYAKLGKYNLNSPTDAFSLTLLREKPEVFYSIAREMDLWPGHFQPTA 102
Query: 62 CHYFLKLLHQKNLLLRHFTQVYWGSFKPTPCHYFLKLLHQKNLLLRHFTQNIDNLERIAG 121
H+F++LL + LLR C TQNID LER AG
Sbjct: 103 VHHFIRLLADEGRLLR--------------C----------------CTQNIDGLERAAG 132
Query: 122 LPDDKLVEAHGSFHTSHCLTCRKDYSVAWMKERIFAEVIPTCEKCNGLVKPDIVFFGENL 181
+P LVEAHGSF + C+ C Y + + +P C C G+VKPD+VFFGENL
Sbjct: 133 VPPSLLVEAHGSFSAASCIECHTPYDIEQAYLEARSGKVPHCSTCGGIVKPDVVFFGENL 192
Query: 182 PSRYFHRVDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPK 224
P +F+ V D P+A+LLLI+GTSL V PF L V D P+
Sbjct: 193 PDAFFN-VHHDIPEAELLLIIGTSLQVHPFALLACVVPKDVPR 234
Score = 58.7 bits (142), Expect = 2e-09
Identities = 59/229 (25%), Positives = 81/229 (35%), Gaps = 60/229 (26%)
Query: 254 SDNIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDYSVAWMKEGNLLGRMGITLGL--H 311
+ NID LER AG+P LVEAHGSF + C+ C Y + E L +
Sbjct: 121 TQNIDGLERAAGVPPSLLVEAHGSFSAASCIECHTPYDI----EQAYLEARSGKVPHCST 176
Query: 312 AGGL---------SSIPGG----------AEVFSALCLEFGVH-----SASAPPHCPRLL 347
GG+ ++P AE+ + VH + P PR+L
Sbjct: 177 CGGIVKPDVVFFGENLPDAFFNVHHDIPEAELLLIIGTSLQVHPFALLACVVPKDVPRVL 236
Query: 348 INKEKVGVGSRNPLMGLLGLSEGLGFDNENNVRD--VFLEGDCDSGCQKLADML------ 399
N E+VG GL D V EG S + +
Sbjct: 237 FNLERVG-----------GLMFRFPTDPLTTFHADSVAKEGRSSSSSSRSSSDSSTSSSS 285
Query: 400 -GWGIPLMGLLGLSEGLGFDNENNV-RDVFLEGDCDSGCQKLADMLGWG 446
G+G G + V RD+F GDC ++LA+ LG G
Sbjct: 286 DGYG---------QFGDYEADPGGVCRDIFFPGDCQESVRRLAEALGLG 325
Score = 29.5 bits (66), Expect = 4.4
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 468 RDVFLEGDCDSGCQKLADMLGWGK 491
RD+F GDC ++LA+ LG G+
Sbjct: 303 RDIFFPGDCQESVRRLAEALGLGE 326
>gnl|CDD|223915 COG0846, SIR2, NAD-dependent protein deacetylases, SIR2 family
[Transcription].
Length = 250
Score = 154 bits (392), Expect = 9e-44
Identities = 70/243 (28%), Positives = 99/243 (40%), Gaps = 42/243 (17%)
Query: 4 AAGIPDFRSPGSGLYDNLEKYKLPHPMAIFELDYFKHRPEAFYTLAKELYPGSFKPTPCH 63
+GIPDFRS GL+ + KY P + F+ PE + E +
Sbjct: 26 ESGIPDFRSKD-GLWSD--KYD---PEDLASPSGFRRDPELVWDFYSERLRLLY------ 73
Query: 64 YFLKLLHQKNLLLRHFTQVYWGSFKPTPCHYFLKLLHQKNLLLRHFTQNIDNLERIAGLP 123
+P HY L L K LLR TQNID L AG
Sbjct: 74 ----------------------LAQPNKAHYALAELEDKGKLLRIITQNIDGLHERAGS- 110
Query: 124 DDKLVEAHGSFHTSHCLTCRKDYSVAWMKERIFAEVIPTCEKCNG-LVKPDIVFFGENLP 182
++E HGS C C Y + + I +IP C KC G +++PD+V+FGE LP
Sbjct: 111 -KNVIELHGSLKRVRCSKCGNQYYDEDVIKFIEDGLIPRCPKCGGPVLRPDVVWFGEPLP 169
Query: 183 SRYFHRVDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPKADLLLIMGTSLVVQPFCS 242
+ + +ADLL+++GTSL V P L + A ++ I +L
Sbjct: 170 ASFLDEALEALKEADLLIVIGTSLKVYPAAGLPE--LAKRRGAKVIEI---NLEPTRLDP 224
Query: 243 LVD 245
+ D
Sbjct: 225 IAD 227
Score = 42.6 bits (101), Expect = 2e-04
Identities = 12/31 (38%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 256 NIDNLERIAGLPDDKLVEAHGSFHTSHCLTC 286
NID L AG ++E HGS C C
Sbjct: 100 NIDGLHERAGS--KNVIELHGSLKRVRCSKC 128
>gnl|CDD|238704 cd01413, SIR2_Af2, SIR2_Af2: Archaeal and prokaryotic group which
includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus
solfataricus ssSir2, and several bacterial homologs; and
are members of the SIR2 family of proteins, silent
information regulator 2 (Sir2) enzymes which catalyze
NAD+-dependent protein/histone deacetylation. Sir2
proteins have been shown to regulate gene silencing, DNA
repair, metabolic enzymes, and life span. The Sir2
homolog from the archaea Sulfolobus solftaricus
deacetylates the non-specific DNA protein Alba to
mediate transcription repression.
Length = 222
Score = 144 bits (364), Expect = 4e-40
Identities = 69/208 (33%), Positives = 100/208 (48%), Gaps = 40/208 (19%)
Query: 4 AAGIPDFRSPGSGLYDNLEKYKLPHPMAIFELDYFKHRPEAFYTLAKELYPGSFKPTPCH 63
+GIPDFRSP GL+ K P + +DYF PE F+ KE
Sbjct: 18 ESGIPDFRSPD-GLW------KKYDPEEVASIDYFYRNPEEFWRFYKE------------ 58
Query: 64 YFLKLLHQKNLLLRHFTQVYWGSFKPTPCHYFLKLLHQKNLLLRHFTQNIDNLERIAGLP 123
+ L + +P HYFL L ++ ++ TQNID L + AG
Sbjct: 59 -IILGLLEA---------------QPNKAHYFLAELEKQGIIKAIITQNIDGLHQRAG-- 100
Query: 124 DDKLVEAHGSFHTSHCLTCRKDYSVAWMKERIFAEVIPTCEKCNGLVKPDIVFFGENLPS 183
++E HG+ T++C+ C Y + +K EV P C KC G+++PD+V FGE LP
Sbjct: 101 SKNVIELHGTLQTAYCVNCGSKYDLEEVKYAKKHEV-PRCPKCGGIIRPDVVLFGEPLPQ 159
Query: 184 RYFHRVDVDFPK-ADLLLIMGTSLVVQP 210
R ++ K ADL +++G+SLVV P
Sbjct: 160 A-LLREAIEAAKEADLFIVLGSSLVVYP 186
Score = 38.5 bits (90), Expect = 0.004
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 256 NIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDYSVAWMK 296
NID L + AG ++E HG+ T++C+ C Y + +K
Sbjct: 91 NIDGLHQRAG--SKNVIELHGTLQTAYCVNCGSKYDLEEVK 129
>gnl|CDD|172627 PRK14138, PRK14138, NAD-dependent deacetylase; Provisional.
Length = 244
Score = 139 bits (351), Expect = 5e-38
Identities = 72/208 (34%), Positives = 105/208 (50%), Gaps = 40/208 (19%)
Query: 4 AAGIPDFRSPGSGLYDNLEKYKLPHPMAIFELDYFKHRPEAFYTLAKE-LYPGSFKPTPC 62
+GIPDFR P G+Y +KY P +F++D+F PE FY AKE ++P
Sbjct: 25 PSGIPDFRGP-QGIY---KKY----PQNVFDIDFFYSHPEEFYRFAKEGIFP-------- 68
Query: 63 HYFLKLLHQKNLLLRHFTQVYWGSFKPTPCHYFLKLLHQKNLLLRHFTQNIDNLERIAGL 122
+ + KP H L L +K L+ TQNID L + AG
Sbjct: 69 ------MLEA---------------KPNLAHVLLAKLEEKGLIEAVITQNIDRLHQKAG- 106
Query: 123 PDDKLVEAHGSFHTSHCLTCRKDYSVAWMKERIFAEVIPTCEKCNGLVKPDIVFFGENLP 182
K++E HG+ +C+ C K Y+V + E++ +P C+ C+GL++P+IVFFGE LP
Sbjct: 107 -SKKVIELHGNVEEYYCVRCGKRYTVEDVIEKLEKSDVPRCDDCSGLIRPNIVFFGEALP 165
Query: 183 SRYFHRVDVDFPKADLLLIMGTSLVVQP 210
KA L+++MG+SLVV P
Sbjct: 166 QDALREAIRLSSKASLMIVMGSSLVVYP 193
Score = 36.0 bits (83), Expect = 0.030
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 243 LVDKTNIRGSDSDNIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDYSV 292
L +K I + NID L + AG K++E HG+ +C+ C K Y+V
Sbjct: 84 LEEKGLIEAVITQNIDRLHQKAG--SKKVIELHGNVEEYYCVRCGKRYTV 131
>gnl|CDD|234777 PRK00481, PRK00481, NAD-dependent deacetylase; Provisional.
Length = 242
Score = 134 bits (340), Expect = 2e-36
Identities = 61/225 (27%), Positives = 87/225 (38%), Gaps = 43/225 (19%)
Query: 6 GIPDFRSPGSGLYDNLEKYKLPHPMAIFELDYFKHRPEAFYTLAKELYPGSFKPTPCHYF 65
GIPDFRS GL++ P + + F PE + ++
Sbjct: 29 GIPDFRSAN-GLWEEH------RPEDVASPEGFARDPELVW----------------KFY 65
Query: 66 LKLLHQKNLLLRHFTQVYWGSFKPTPCHYFLKLLHQKNLLLRHFTQNIDNLERIAGLPDD 125
+ Q KP H L L + L+ TQNID L AG
Sbjct: 66 NERRRQLL------------DAKPNAAHRALAELEKLGKLVTVITQNIDGLHERAG--SK 111
Query: 126 KLVEAHGSFHTSHCLTCRKDYSVAWMKERIFAEVIPTCEKCNGLVKPDIVFFGENLPSRY 185
++E HGS + C C + Y + + P C KC G+++PD+V FGE LP
Sbjct: 112 NVIELHGSLLRARCTKCGQTYDL----DEYLKPEPPRCPKCGGILRPDVVLFGEMLPELA 167
Query: 186 FHRVDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPKADLLLI 230
+ADL +++GTSLVV P L + A + I
Sbjct: 168 IDEAYEALEEADLFIVIGTSLVVYPAAGLPY--EAREHGAKTVEI 210
Score = 35.5 bits (83), Expect = 0.044
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 256 NIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDYSV 292
NID L AG ++E HGS + C C + Y +
Sbjct: 100 NIDGLHERAG--SKNVIELHGSLLRARCTKCGQTYDL 134
>gnl|CDD|238702 cd01411, SIR2H, SIR2H: Uncharacterized prokaryotic Sir2 homologs
from several gram positive bacterial species and
Fusobacteria; and are members of the SIR2 family of
proteins, silent information regulator 2 (Sir2) enzymes
which catalyze NAD+-dependent protein/histone
deacetylation. Sir2 proteins have been shown to regulate
gene silencing, DNA repair, metabolic enzymes, and life
span.
Length = 225
Score = 117 bits (295), Expect = 2e-30
Identities = 70/234 (29%), Positives = 95/234 (40%), Gaps = 49/234 (20%)
Query: 4 AAGIPDFRSPGSGLYDNLEKYKLPHPMAIFELDYFKHRPEAFYTLAKE--LYPGSFKPTP 61
A+GIPD+RS GLY+ + KY P + D+ + PE FY KE +P +
Sbjct: 22 ASGIPDYRSKN-GLYNEIYKYS---PEYLLSHDFLEREPEKFYQFVKENLYFPDA----- 72
Query: 62 CHYFLKLLHQKNLLLRHFTQVYWGSFKPTPCHYFLKLLHQKNLLLRHFTQNIDNLERIAG 121
KP H + L + L TQNID L + AG
Sbjct: 73 --------------------------KPNIIHQKMAELEKMGLK-AVITQNIDGLHQKAG 105
Query: 122 LPDDKLVEAHGSFHTSHCLTCRKDYSVAWMKERIFAEVIPTCEKCNGLVKPDIVFFGENL 181
+VE HGS + +C C K + P KC G+++PDIV + E L
Sbjct: 106 --SKNVVEFHGSLYRIYCTVCGKTVDWEEYLK------SPYHAKCGGVIRPDIVLYEEML 157
Query: 182 PSRYFHRVDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPKADLLLIMGTSL 235
KADLL+I+GTS VV PF L+D A+L+ I
Sbjct: 158 NESVIEEAIQAIEKADLLVIVGTSFVVYPFAGLIDYR---QAGANLIAINKEPT 208
Score = 34.6 bits (80), Expect = 0.079
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 254 SDNIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDYSV 292
+ NID L + AG +VE HGS + +C C K
Sbjct: 94 TQNIDGLHQKAG--SKNVVEFHGSLYRIYCTVCGKTVDW 130
>gnl|CDD|238701 cd01410, SIRT7, SIRT7: Eukaryotic and prokaryotic group (class4)
which includes human sirtuin SIRT6, SIRT7, and several
bacterial homologs; and are members of the SIR2 family
of proteins, silent information regulator 2 (Sir2)
enzymes which catalyze NAD+-dependent protein/histone
deacetylation. Sir2 proteins have been shown to regulate
gene silencing, DNA repair, metabolic enzymes, and life
span.
Length = 206
Score = 107 bits (269), Expect = 7e-27
Identities = 47/131 (35%), Positives = 62/131 (47%), Gaps = 1/131 (0%)
Query: 89 PTPCHYFLKLLHQKNLLLRHFTQNIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDYSV 148
PT H L L + LL +QN+D L +GLP +KL E HG+ C +C +Y
Sbjct: 48 PTLTHMALVELERAGLLKFVISQNVDGLHLRSGLPREKLSELHGNMFIEVCKSCGPEYVR 107
Query: 149 AWMKERIFA-EVIPTCEKCNGLVKPDIVFFGENLPSRYFHRVDVDFPKADLLLIMGTSLV 207
+ E E C C G++K IV FGE LP + +ADL L +GTSL
Sbjct: 108 DDVVETRGDKETGRRCHACGGILKDTIVDFGERLPPENWMGAAAAACRADLFLCLGTSLQ 167
Query: 208 VQPFCSLVDKV 218
V P +L K
Sbjct: 168 VTPAANLPLKA 178
Score = 51.5 bits (124), Expect = 2e-07
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 9/61 (14%)
Query: 254 SDNIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDYSVAWMKEGNLLGRMGITLGLHAG 313
S N+D L +GLP +KL E HG+ C +C +Y + E T G
Sbjct: 69 SQNVDGLHLRSGLPREKLSELHGNMFIEVCKSCGPEYVRDDVVE---------TRGDKET 119
Query: 314 G 314
G
Sbjct: 120 G 120
>gnl|CDD|238703 cd01412, SIRT5_Af1_CobB, SIRT5_Af1_CobB: Eukaryotic, archaeal and
prokaryotic group (class3) which includes human sirtuin
SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli
CobB; and are members of the SIR2 family of proteins,
silent information regulator 2 (Sir2) enzymes which
catalyze NAD+-dependent protein/histone deacetylation.
Sir2 proteins have been shown to regulate gene
silencing, DNA repair, metabolic enzymes, and life span.
CobB is a bacterial sirtuin that deacetylates acetyl-CoA
synthetase at an active site lysine to stimulate its
enzymatic activity. .
Length = 224
Score = 101 bits (253), Expect = 1e-24
Identities = 46/132 (34%), Positives = 67/132 (50%), Gaps = 8/132 (6%)
Query: 88 KPTPCHYFLKLLHQKNLLLRHFTQNIDNLERIAGLPDDKLVEAHGSFHTSHCLTC-RKDY 146
+P P H L L ++ + TQN+D L AG ++E HGS C +C
Sbjct: 63 QPNPAHLALAELERRLPNVLLITQNVDGLHERAG--SRNVIELHGSLFRVRCSSCGYVGE 120
Query: 147 SVAWMKERIFAEVIPTCEKCNGLVKPDIVFFGENLPSRYFHRVDVDFPKADLLLIMGTSL 206
+ + E E +P C KC GL++P +V+FGE+LP V+ KADL L++GTS
Sbjct: 121 NNEEIPE----EELPRCPKCGGLLRPGVVWFGESLPLALLEAVEA-LAKADLFLVIGTSG 175
Query: 207 VVQPFCSLVDKV 218
VV P L ++
Sbjct: 176 VVYPAAGLPEEA 187
Score = 30.6 bits (70), Expect = 1.6
Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 256 NIDNLERIAGLPDDKLVEAHGSFHTSHCLTC-RKDYSVAWMKEGNL 300
N+D L AG ++E HGS C +C + + E L
Sbjct: 87 NVDGLHERAG--SRNVIELHGSLFRVRCSSCGYVGENNEEIPEEEL 130
>gnl|CDD|238700 cd01409, SIRT4, SIRT4: Eukaryotic and prokaryotic group (class2)
which includes human sirtuin SIRT4 and several bacterial
homologs; and are members of the SIR2 family of
proteins, silent information regulator 2 (Sir2) enzymes
which catalyze NAD+-dependent protein/histone
deacetylation. Sir2 proteins have been shown to regulate
gene silencing, DNA repair, metabolic enzymes, and life
span.
Length = 260
Score = 89.3 bits (222), Expect = 5e-20
Identities = 67/243 (27%), Positives = 93/243 (38%), Gaps = 89/243 (36%)
Query: 6 GIPDFRSPGSGLYDNLEKYKLPHPMAIFELDYFKHRPEAFYTLAKELYPGSFKPTPCHYF 65
GIPD+RS G LY +F+P
Sbjct: 24 GIPDYRSEGG------------------------------------LYSRTFRP------ 41
Query: 66 LKLLHQKNLLLRHFTQVYW----------GSFKPTPCHYFLKLLHQKNLLLRHFTQNIDN 115
+ HQ+ + Q YW + +P H L L L TQN+D
Sbjct: 42 --MTHQEFMRSPAARQRYWARSFVGWPRFSAAQPNAAHRALAALEAAGRLHGLITQNVDG 99
Query: 116 LERIAGLPDDKLVEAHGSFHTSHCLTCRKDYSVAWMKERI------FAEV---------- 159
L AG +VE HGS H CL+C A +++R+ FAE
Sbjct: 100 LHTKAG--SRNVVELHGSLHRVVCLSCGFRTPRAELQDRLEALNPGFAEQAAGQAPDGDV 157
Query: 160 -----------IPTCEKCNGLVKPDIVFFGENLPSRYFHRVDVDFPK---ADLLLIMGTS 205
+P CE+C G++KPD+VFFGEN+P RV + AD LL++G+S
Sbjct: 158 DLEDEQVAGFRVPECERCGGVLKPDVVFFGENVPR---DRVVTAAARLAEADALLVLGSS 214
Query: 206 LVV 208
L+V
Sbjct: 215 LMV 217
Score = 30.3 bits (69), Expect = 1.8
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 256 NIDNLERIAGLPDDKLVEAHGSFHTSHCLTC 286
N+D L AG +VE HGS H CL+C
Sbjct: 96 NVDGLHTKAG--SRNVVELHGSLHRVVCLSC 124
>gnl|CDD|173599 PTZ00409, PTZ00409, Sir2 (Silent Information Regulator) protein;
Provisional.
Length = 271
Score = 78.8 bits (194), Expect = 2e-16
Identities = 54/213 (25%), Positives = 85/213 (39%), Gaps = 40/213 (18%)
Query: 5 AGIPDFRSPGSGLYDNLEKYKLPHPMAIFELDYFKHRPEAFYTLAKELYPGSFKPTPCHY 64
+ IP FR P S ++ K+ P+ + T+
Sbjct: 43 SNIPSFRGPSSSIWS-------------------KYDPKIYGTIWG-------------- 69
Query: 65 FLKLLHQKNLLLRHFTQVYWGSFKPTPCHYFLKLLHQKNLLLRHFTQNIDNLERIAGLPD 124
F K + ++R + Y + P H L L L TQN+D L +G +
Sbjct: 70 FWKYPEKIWEVIRDISSDY--EIELNPGHVALSTLESLGYLKFVVTQNVDGLHEESG--N 125
Query: 125 DKLVEAHGSFHTSHCLTCRKDY---SVAWMKERIFAEVIPTCEKCNGLVKPDIVFFGENL 181
K++ HGS + C TCRK + K F +P C G+ KP+++ FGE +
Sbjct: 126 TKVIPLHGSVFEARCCTCRKTIQLNKIMLQKTSHFMHQLPPECPCGGIFKPNVILFGEVI 185
Query: 182 PSRYFHRVDVDFPKADLLLIMGTSLVVQPFCSL 214
P + + + K DLLL++GTS V +L
Sbjct: 186 PKSLLKQAEKEIDKCDLLLVVGTSSSVSTATNL 218
Score = 32.2 bits (73), Expect = 0.58
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 254 SDNIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRK 288
+ N+D L +G + K++ HGS + C TCRK
Sbjct: 113 TQNVDGLHEESG--NTKVIPLHGSVFEARCCTCRK 145
>gnl|CDD|235415 PRK05333, PRK05333, NAD-dependent deacetylase; Provisional.
Length = 285
Score = 75.9 bits (187), Expect = 2e-15
Identities = 44/165 (26%), Positives = 67/165 (40%), Gaps = 39/165 (23%)
Query: 81 QVYW----------GSFKPTPCHYFLKLLHQKNLLLRHFTQNIDNLERIAGLPDDKLVEA 130
+ YW G +P H+ L L + R TQN+D L + AG D ++E
Sbjct: 65 RRYWARSMVGWPVFGRAQPNAAHHALARLGAAGRIERLVTQNVDGLHQRAGSRD--VIEL 122
Query: 131 HGSFHTSHCLTCRKDYSVAWMKERIFAE---------------------------VIPTC 163
HG C+ C + A ++ + A +P C
Sbjct: 123 HGRLDGVRCMGCGARHPRAEIQHVLEAANPEWLALEAAPAPDGDADLEWAAFDHFRVPAC 182
Query: 164 EKCNGLVKPDIVFFGENLPSRYFHRVDVDFPKADLLLIMGTSLVV 208
C G++KPD+VFFGEN+P AD +L++G+SL+V
Sbjct: 183 PACGGILKPDVVFFGENVPRERVAAARAALDAADAVLVVGSSLMV 227
>gnl|CDD|240405 PTZ00408, PTZ00408, NAD-dependent deacetylase; Provisional.
Length = 242
Score = 49.8 bits (119), Expect = 9e-07
Identities = 53/214 (24%), Positives = 78/214 (36%), Gaps = 43/214 (20%)
Query: 5 AGIPDFRSPGSGLYDNLEKYKLPHPMAIFELDYFKHRPEAFYT-LAKELYPGSFKPTPCH 63
+GI FR G+GL++N + P A R FY + L S KP H
Sbjct: 19 SGISTFRD-GNGLWENHRVEDVATPDAFLRNPALVQR---FYNERRRALLSSSVKPNKAH 74
Query: 64 YFLKLLHQKNLLLRHFTQVYWGSFKPTPCHYFLKLLHQKNLLLRHFTQNIDNLERIAGLP 123
+ L L ++ Y G + TQN+DNL AG
Sbjct: 75 FALAKLERE----------YRGGK------------------VVVVTQNVDNLHERAG-- 104
Query: 124 DDKLVEAHGSFHTSHCLTCRKDYSVAWMKERIFAEVIPTCEKC--NGLVKPDIVFFGENL 181
++ HG C + W ++ + C+ C G ++P IV+FGE
Sbjct: 105 STHVLHMHGELLKVRCTATGHVFD--WTEDVVHGS--SRCKCCGCVGTLRPHIVWFGE-- 158
Query: 182 PSRYFHRVDVDFPKADLLLIMGTSLVVQPFCSLV 215
Y ++ K DL + +GTS V P V
Sbjct: 159 MPLYMDEIESVMSKTDLFVAVGTSGNVYPAAGFV 192
>gnl|CDD|236199 PRK08244, PRK08244, hypothetical protein; Provisional.
Length = 493
Score = 31.3 bits (71), Expect = 1.3
Identities = 15/55 (27%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 98 LLHQKNLLLRHFTQNIDNLERIAGLP--DDKLVEAHGSFHTSHCLTCRKDYSVAW 150
LLH+ LL F + R + L E ++ H R D VAW
Sbjct: 415 LLHKGTFLLLSFGSEPQDWSRYPHVRVVRASLAEGRADWNDVHTALIRPDGHVAW 469
>gnl|CDD|216161 pfam00865, Osteopontin, Osteopontin.
Length = 293
Score = 30.8 bits (69), Expect = 1.3
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Query: 124 DDKLVEAHGSFHTSHCLTCRKDYSVAWMKERIFAEVIPTCEKCNGLVKPDIVFFGENLPS 183
D E+H S + +T D+ +F V+PT + +G + D V +G S
Sbjct: 97 SDHSDESHHSDESDESVT---DFPTETPATDVFTPVVPTVDTNDG--RGDSVAYGLRSKS 151
Query: 184 RYFHRVDVDFPKA 196
+ F R D +P A
Sbjct: 152 KKFRRSDAQYPDA 164
>gnl|CDD|181427 PRK08445, PRK08445, hypothetical protein; Provisional.
Length = 348
Score = 30.5 bits (69), Expect = 2.0
Identities = 13/18 (72%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
Query: 310 LHAGGLSSIPG-GAEVFS 326
L A GLSSIPG GAE+ S
Sbjct: 150 LQAKGLSSIPGAGAEILS 167
>gnl|CDD|226730 COG4280, COG4280, Predicted membrane protein [Function unknown].
Length = 236
Score = 29.8 bits (67), Expect = 2.6
Identities = 22/71 (30%), Positives = 28/71 (39%), Gaps = 7/71 (9%)
Query: 306 ITLGL-HAGGLSSIPG-GAEVFSALCLEFGVHSASAPPHCPRLLINKEKVGVGSRNPLMG 363
I LG + L +I G G L L +HS A R+ K G+ G
Sbjct: 138 IALGAASSQWLEAIMGAGFASVLVLVLTAILHSPLA-----RVPEPHLKFVAGALLFSFG 192
Query: 364 LLGLSEGLGFD 374
L EG+GFD
Sbjct: 193 TFWLGEGVGFD 203
>gnl|CDD|173793 cd04847, Peptidases_S8_Subtilisin_like_2, Peptidase S8 family
domain in Subtilisin-like proteins. This family is a
member of the Peptidases S8 or Subtilases serine endo-
and exo-peptidase clan. They have an Asp/His/Ser
catalytic triad similar to that found in trypsin-like
proteases, but do not share their three-dimensional
structure and are not homologous to trypsin. The
stability of subtilases may be enhanced by calcium, some
members have been shown to bind up to 4 ions via binding
sites with different affinity. Some members of this clan
contain disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values.
Length = 291
Score = 29.6 bits (67), Expect = 3.2
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 167 NGLVKPDIVFFGENLPSRYFHRVDVDFPKADL 198
G +KPD+V FG NL + D + L
Sbjct: 209 PGPIKPDVVAFGGNL-AYDPSGNAADGDLSLL 239
>gnl|CDD|217145 pfam02616, ScpA_ScpB, ScpA/B protein. ScpA and ScpB participate in
chromosomal partition during cell division. It may act
via the formation of a condensin-like complex containing
smc that pull DNA away from mid-cell into both cell
halves. These proteins are part of the Kleisin
superfamily.
Length = 177
Score = 29.3 bits (66), Expect = 3.5
Identities = 22/114 (19%), Positives = 36/114 (31%), Gaps = 16/114 (14%)
Query: 64 YFLKLLHQKNLL-LRHFTQVY-WGSFKPTPCHYFLKLLHQK-NLLLRHFTQNIDNLERIA 120
+L+ + N L LR T S LL K LLR F++ L+
Sbjct: 20 QYLQYIKTLNKLDLRISTDYLLIASI----------LLRMKAEALLRSFSKKPVTLDEFI 69
Query: 121 GLPDDKLVEAHGSFHTSHCL---TCRKDYSVAWMKERIFAEVIPTCEKCNGLVK 171
+++LVE S ++ K+ + E L+
Sbjct: 70 KTLEEELVEVEKSVLDLIHAFNKLVKRKRKNRLRKKNETELEVSVEEVLEELLA 123
>gnl|CDD|205435 pfam13255, DUF4046, Protein of unknown function (DUF4046). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 64 and 331 amino acids
in length.
Length = 302
Score = 29.3 bits (66), Expect = 4.9
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 7/38 (18%)
Query: 21 LEKYKLPHPMAIFELDYFKHRPEAFYTLAKELYPGSFK 58
LEK+KL P+ + Y+ P Y + +LYP FK
Sbjct: 133 LEKHKLSAPLRV----YWNGSP---YAMINDLYPNRFK 163
>gnl|CDD|216084 pfam00725, 3HCDH, 3-hydroxyacyl-CoA dehydrogenase, C-terminal
domain. This family also includes lambda crystallin.
Some proteins include two copies of this domain.
Length = 97
Score = 27.6 bits (62), Expect = 5.1
Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 7/66 (10%)
Query: 398 MLGWGIPLMGLLGLSEGLGFDNENNVRDVFLEGDCDSG--CQKLADMLGWGIPLMGLLGL 455
LG G+P MG LS+ +G D ++ +V E D L + L G LG
Sbjct: 34 RLGLGLP-MGPFELSDLVGLDVGYHILEVLAEEFGDRAYRPSPLLEKLV----EAGRLGR 88
Query: 456 SEGLGF 461
G GF
Sbjct: 89 KTGKGF 94
>gnl|CDD|188527 TIGR04012, poly_gGlu_PgsB, poly-gamma-glutamate synthase PgsB/CapB.
Of four genes commonly found to be involved in
biosynthesis and export of poly-gamma-glutamate,
pgsB(capB) and pgsC(capC) are found to be involved in
the synthesis per se. Members of this family are
designated PgsB, a nomeclature that covers both cases in
which the poly-gamma-glutamate is secreted and those in
which it is retained to form capsular material.PgsB has
been shown to have poly-gamma-glutamate activity by
itself but is bound tightly by PgsC (TIGR04011) [Cell
envelope, Other].
Length = 366
Score = 28.8 bits (65), Expect = 7.4
Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 8/66 (12%)
Query: 220 VDFPKADLLLIMGTSLVVQPFCSLVDKTNIRG------SDSDNIDNLERIAGLPDDKLVE 273
+ + AD L+++G + F S+ K I + I+ +E I L+
Sbjct: 293 LPWSPADKLVLIGEG--TELFTSVYKKGKIPPNKYLNLENKSTIEIVEMILEESSSALIF 350
Query: 274 AHGSFH 279
G+ H
Sbjct: 351 GVGNIH 356
>gnl|CDD|211366 cd09255, AP-like_stonins_MHD, Mu homology domain (MHD) of
adaptor-like proteins (AP-like), stonins. A small
family of proteins named stonins has been characterized
as clathrin-dependent AP-2 mu2 chain related factors,
which may act as cargo-specific sorting adaptors in
endocytosis. Stonins include stonin 1 and stonin 2,
which are only mammalian homologs of Drosophila stoned
B, a presynaptic protein implicated in neurotransmission
and synaptic vesicle (SV) recycling. They are conserved
from C. elegans to humans, but are not found in
prokaryotes or yeasts. This family corresponds to the mu
homology domain of stonins, which is distantly related
to the C-terminal domain of mu chains among AP
complexes. Due to the low degree of sequence
conservation of the corresponding binding site, the mu
homology domain of stonins is unable to recognize
tyrosine-based endocytic sorting signals. To data,
little is known about the localization and function of
stonin 1. Stonin 2, also known as stoned B, acts as an
AP-2-dependent synaptotagmin-specific sorting adaptors
for SV endocytosis. Stoned A is not a stonin. It is
structurally unrelated to the adaptins and does not
appear to have mammalian homologs. It is not included in
this family.
Length = 308
Score = 28.4 bits (64), Expect = 9.7
Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 8/47 (17%)
Query: 118 RIAGLPDDKLVEAHGSFHTSHCLTCRKDYSVAWMKERIFAEVIPTCE 164
RI LP+ + ++ H L+CR + + + I + P E
Sbjct: 234 RIPRLPE----KNSAAYTP-HLLSCRLELASD---DEIPSSFYPHAE 272
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.143 0.457
Gapped
Lambda K H
0.267 0.0681 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 26,007,389
Number of extensions: 2589328
Number of successful extensions: 2083
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2024
Number of HSP's successfully gapped: 63
Length of query: 494
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 393
Effective length of database: 6,457,848
Effective search space: 2537934264
Effective search space used: 2537934264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (27.4 bits)