RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11832
(494 letters)
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent
deacetylase, sirtuin, substrate peptide comple
hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens}
PDB: 3gls_A 3glt_A* 3glu_A
Length = 285
Score = 286 bits (733), Expect = 3e-94
Identities = 114/227 (50%), Positives = 143/227 (62%), Gaps = 34/227 (14%)
Query: 4 AAGIPDFRSPGSGLYDNLEKYKLPHPMAIFELDYFKHRPEAFYTLAKELYPGSFKPTPCH 63
+GIPDFRSPGSGLY NL++Y LP+P AIFEL +F H P+ F+TLAKELYPG++KP H
Sbjct: 37 PSGIPDFRSPGSGLYSNLQQYDLPYPEAIFELPFFFHNPKPFFTLAKELYPGNYKPNVTH 96
Query: 64 YFLKLLHQKNLLLRHFTQVYWGSFKPTPCHYFLKLLHQKNLLLRHFTQNIDNLERIAGLP 123
YFL+LLH K LLLR +TQ NID LER++G+P
Sbjct: 97 YFLRLLHDKGLLLRLYTQ------------------------------NIDGLERVSGIP 126
Query: 124 DDKLVEAHGSFHTSHCLTCRKDYSVAWMKERIFAEVIPTCEKCNGLVKPDIVFFGENLPS 183
KLVEAHG+F ++ C C++ + ++ + A+ +P C C G+VKPDIVFFGE LP
Sbjct: 127 ASKLVEAHGTFASATCTVCQRPFPGEDIRADVMADRVPRCPVCTGVVKPDIVFFGEPLPQ 186
Query: 184 RYFHRVDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPKADLLLI 230
R F VDFP ADLLLI+GTSL V+PF SL + V P LLI
Sbjct: 187 R-FLLHVVDFPMADLLLILGTSLEVEPFASLTEAVRSSVP---RLLI 229
Score = 101 bits (254), Expect = 2e-24
Identities = 44/176 (25%), Positives = 66/176 (37%), Gaps = 39/176 (22%)
Query: 256 NIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDYSVAWMKEGNLL----------GRMG 305
NID LER++G+P KLVEAHG+F ++ C C++ + ++ + G +
Sbjct: 115 NIDGLERVSGIPASKLVEAHGTFASATCTVCQRPFPGEDIRADVMADRVPRCPVCTGVVK 174
Query: 306 ITLGLHAGGL-SSIPGGAEVFSA--LCLEFG----VHSAS-----APPHCPRLLINKEKV 353
+ L F L L G V + PRLLIN++ V
Sbjct: 175 PDIVFFGEPLPQRFLLHVVDFPMADLLLILGTSLEVEPFASLTEAVRSSVPRLLINRDLV 234
Query: 354 GVGSRNPLMGLLGLSEGLGFDNENNVRDVFLEGDCDSGCQKLADMLGWGIPLMGLL 409
G RDV GD G + L ++LGW + L+
Sbjct: 235 G-----------------PLAWHPRSRDVAQLGDVVHGVESLVELLGWTEEMRDLV 273
Score = 42.0 bits (99), Expect = 2e-04
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 461 FDNENNVRDVFLEGDCDSGCQKLADMLGWGKDI 493
RDV GD G + L ++LGW +++
Sbjct: 237 LAWHPRSRDVAQLGDVVHGVESLVELLGWTEEM 269
Score = 39.3 bits (92), Expect = 0.002
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 417 FDNENNVRDVFLEGDCDSGCQKLADMLGWGIPLMGLL 453
RDV GD G + L ++LGW + L+
Sbjct: 237 LAWHPRSRDVAQLGDVVHGVESLVELLGWTEEMRDLV 273
>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation,
transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5
Length = 323
Score = 287 bits (735), Expect = 6e-94
Identities = 130/229 (56%), Positives = 156/229 (68%), Gaps = 35/229 (15%)
Query: 4 AAGIPDFRSPGSGLYDNLEKYKLPHPMAIFELDYFKHRPEAFYTLAKELYPGSFKPTPCH 63
+AGIPDFRSP +GLYDNLEKY LP+P AIFE+ YFK PE F+ LAKELYPG FKPT CH
Sbjct: 57 SAGIPDFRSPSTGLYDNLEKYHLPYPEAIFEISYFKKHPEPFFALAKELYPGQFKPTICH 116
Query: 64 YFLKLLHQKNLLLRHFTQVYWGSFKPTPCHYFLKLLHQKNLLLRHFTQNIDNLERIAGLP 123
YF++LL K LLLR +TQ NID LERIAGL
Sbjct: 117 YFMRLLKDKGLLLRCYTQ------------------------------NIDTLERIAGLE 146
Query: 124 DDKLVEAHGSFHTSHCL--TCRKDYSVAWMKERIFAEVIPTCEKCNGLVKPDIVFFGENL 181
+ LVEAHG+F+TSHC+ +CR +Y ++WMKE+IF+EV P CE C LVKPDIVFFGE+L
Sbjct: 147 QEDLVEAHGTFYTSHCVSASCRHEYPLSWMKEKIFSEVTPKCEDCQSLVKPDIVFFGESL 206
Query: 182 PSRYFHRVDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPKADLLLI 230
P+R+F + DF K DLLL+MGTSL VQPF SL+ K + P+ LLI
Sbjct: 207 PARFFSCMQSDFLKVDLLLVMGTSLQVQPFASLISKAPLSTPR---LLI 252
Score = 118 bits (297), Expect = 5e-30
Identities = 70/181 (38%), Positives = 93/181 (51%), Gaps = 32/181 (17%)
Query: 256 NIDNLERIAGLPDDKLVEAHGSFHTSHCL--TCRKDYSVAWMKE-------------GNL 300
NID LERIAGL + LVEAHG+F+TSHC+ +CR +Y ++WMKE +L
Sbjct: 135 NIDTLERIAGLEQEDLVEAHGTFYTSHCVSASCRHEYPLSWMKEKIFSEVTPKCEDCQSL 194
Query: 301 LGRMGITL---GLHAGGLSSIPGGAEVFSA-LCLEFG----VHSAS-----APPHCPRLL 347
+ + I L A S + ++ L L G V + AP PRLL
Sbjct: 195 V-KPDIVFFGESLPARFFSCMQ--SDFLKVDLLLVMGTSLQVQPFASLISKAPLSTPRLL 251
Query: 348 INKEKVGVGSRNPLMGLLGLSEGLGFDNENNVRDVFLEGDCDSGCQKLADMLGWGIPLMG 407
INKEK G M ++GL G+ FD++ RDV G+CD GC LA++LGW L
Sbjct: 252 INKEKAGQSDPFLGM-IMGLGGGMDFDSKKAYRDVAWLGECDQGCLALAELLGWKKELED 310
Query: 408 L 408
L
Sbjct: 311 L 311
Score = 54.8 bits (132), Expect = 2e-08
Identities = 19/42 (45%), Positives = 29/42 (69%)
Query: 452 LLGLSEGLGFDNENNVRDVFLEGDCDSGCQKLADMLGWGKDI 493
++GL G+ FD++ RDV G+CD GC LA++LGW K++
Sbjct: 267 IMGLGGGMDFDSKKAYRDVAWLGECDQGCLALAELLGWKKEL 308
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP
ribose,, gene regulation; HET: ALY OAD; 1.50A
{Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A*
1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Length = 289
Score = 280 bits (717), Expect = 1e-91
Identities = 103/289 (35%), Positives = 145/289 (50%), Gaps = 51/289 (17%)
Query: 4 AAGIPDFRSPGSGLYDNLEKYKLPHPMAIFELDYFKHRPEAFYTLAKELYPGSFKPTPCH 63
+ GIPDFRSPG+GLY NL + KLP+P A+F++D+F+ P FYTLAKELYPG+F+P+ H
Sbjct: 34 SCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTLAKELYPGNFRPSKFH 93
Query: 64 YFLKLLHQKNLLLRHFTQVYWGSFKPTPCHYFLKLLHQKNLLLRHFTQNIDNLERIAGLP 123
Y LKL K++L R +TQ NID LER AG+
Sbjct: 94 YLLKLFQDKDVLKRVYTQ------------------------------NIDTLERQAGVK 123
Query: 124 DDKLVEAHGSFHTSHCLTCRKDYSVAWMKERIFAEVI---PTCEKCNGLVKPDIVFFGEN 180
DD ++EAHGSF HC+ C K Y K ++ I C+ C LVKP IVFFGE+
Sbjct: 124 DDLIIEAHGSFAHCHCIGCGKVYPPQVFKSKLAEHPIKDFVKCDVCGELVKPAIVFFGED 183
Query: 181 LPSRYFHRVDVD-------------FPKADLLLIMGTSLVVQPFCSLVDKVDVDFPKADL 227
LP + D P+ L++++GTSL V PF SL +++ + +
Sbjct: 184 LPDSFSETWLNDSEWLREKITTSGKHPQQPLVIVVGTSLAVYPFASLPEEIPRKVKR--V 241
Query: 228 LLIMGTSLVVQPFCSLVDKTNIRGSDSDNIDNLERIAGLPDD--KLVEA 274
L + T + D + + + L G +D K++ A
Sbjct: 242 LCNLETVGDFKANKRPTDLI-VHQYSDEFAEQLVEELGWQEDFEKILTA 289
Score = 101 bits (254), Expect = 2e-24
Identities = 40/193 (20%), Positives = 53/193 (27%), Gaps = 56/193 (29%)
Query: 256 NIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDYSVAWMKEGNLLGRMG---------- 305
NID LER AG+ DD ++EAHGSF HC+ C K Y K +
Sbjct: 112 NIDTLERQAGVKDDLIIEAHGSFAHCHCIGCGKVYPPQVFKSKLAEHPIKDFVKCDVCGE 171
Query: 306 ------------------------ITLGLHAGGLSSIPGGAEVF-----SALCLEFGVHS 336
S + S F
Sbjct: 172 LVKPAIVFFGEDLPDSFSETWLNDSEWLREKITTSGKHPQQPLVIVVGTSLAVYPFASLP 231
Query: 337 ASAPPHCPRLLINKEKVGVGSRNPLMGLLGLSEGLGFDNENNVRDVFLEGDCDSGCQKLA 396
P R+L N E VG F D+ + D ++L
Sbjct: 232 EEIPRKVKRVLCNLETVG-----------------DFKANKRPTDLIVHQYSDEFAEQLV 274
Query: 397 DMLGWGIPLMGLL 409
+ LGW +L
Sbjct: 275 EELGWQEDFEKIL 287
Score = 39.3 bits (92), Expect = 0.002
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 461 FDNENNVRDVFLEGDCDSGCQKLADMLGWGKDI 493
F D+ + D ++L + LGW +D
Sbjct: 251 FKANKRPTDLIVHQYSDEFAEQLVEELGWQEDF 283
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces
cerevisiae} SCOP: c.31.1.5
Length = 361
Score = 273 bits (700), Expect = 3e-88
Identities = 95/231 (41%), Positives = 127/231 (54%), Gaps = 46/231 (19%)
Query: 4 AAGIPDFRSPGSGLYDNLEKYKLPHPMAIFELDYFKHRPEAFYTLAKELYPGSFKPTPCH 63
+ GIPDFRSPG+GLY NL + KLP+P A+F++D+F+ P FYTLAKELYPG+F+P+ H
Sbjct: 42 SCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTLAKELYPGNFRPSKFH 101
Query: 64 YFLKLLHQKNLLLRHFTQVYWGSFKPTPCHYFLKLLHQKNLLLRHFTQNIDNLERIAGLP 123
Y LKL K++L R +TQ NID LER AG+
Sbjct: 102 YLLKLFQDKDVLKRVYTQ------------------------------NIDTLERQAGVK 131
Query: 124 DDKLVEAHGSFHTSHCLTCRKDYSVAWMKERIFAEVI---PTCEKCNGLVKPDIVFFGEN 180
DD ++EAHGSF HC+ C K Y K ++ I C+ C LVKP IVFFGE+
Sbjct: 132 DDLIIEAHGSFAHCHCIGCGKVYPPQVFKSKLAEHPIKDFVKCDVCGELVKPAIVFFGED 191
Query: 181 LPSRYFHRVDVD-------------FPKADLLLIMGTSLVVQPFCSLVDKV 218
LP + D P+ L++++GTSL V PF SL +++
Sbjct: 192 LPDSFSETWLNDSEWLREKITTSGKHPQQPLVIVVGTSLAVYPFASLPEEI 242
Score = 100 bits (250), Expect = 2e-23
Identities = 40/193 (20%), Positives = 53/193 (27%), Gaps = 56/193 (29%)
Query: 256 NIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDYSVAWMKEGNLLGRMG---------- 305
NID LER AG+ DD ++EAHGSF HC+ C K Y K +
Sbjct: 120 NIDTLERQAGVKDDLIIEAHGSFAHCHCIGCGKVYPPQVFKSKLAEHPIKDFVKCDVCGE 179
Query: 306 ------------------------ITLGLHAGGLSSIPGGAEVF-----SALCLEFGVHS 336
S + S F
Sbjct: 180 LVKPAIVFFGEDLPDSFSETWLNDSEWLREKITTSGKHPQQPLVIVVGTSLAVYPFASLP 239
Query: 337 ASAPPHCPRLLINKEKVGVGSRNPLMGLLGLSEGLGFDNENNVRDVFLEGDCDSGCQKLA 396
P R+L N E VG F D+ + D ++L
Sbjct: 240 EEIPRKVKRVLCNLETVG-----------------DFKANKRPTDLIVHQYSDEFAEQLV 282
Query: 397 DMLGWGIPLMGLL 409
+ LGW +L
Sbjct: 283 EELGWQEDFEKIL 295
Score = 39.2 bits (91), Expect = 0.002
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 461 FDNENNVRDVFLEGDCDSGCQKLADMLGWGKDI 493
F D+ + D ++L + LGW +D
Sbjct: 259 FKANKRPTDLIVHQYSDEFAEQLVEELGWQEDF 291
>2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin,
acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ;
1.85A {Saccharomyces cerevisiae}
Length = 354
Score = 264 bits (676), Expect = 1e-84
Identities = 76/257 (29%), Positives = 108/257 (42%), Gaps = 66/257 (25%)
Query: 4 AAGIPDFRSPGSGLYDNLEKYKLPHPMAIFELDYFKHRPEAFYTLAKELYPGSFKPTPCH 63
+ GIPDFRS G Y ++ L P +F + F H P FY +A +
Sbjct: 60 SLGIPDFRSSE-GFYSKIKHLGLDDPQDVFNYNIFMHDPSVFYNIANMVL---------- 108
Query: 64 YFLKLLHQKNLLLRHFTQVYWGSFKPTPCHYFLKLLHQKNLLLRHFTQNIDNLERIAGLP 123
+P H F+K+L K LLR++TQNIDNLE AG+
Sbjct: 109 --------------------PPEKIYSPLHSFIKMLQMKGKLLRNYTQNIDNLESYAGIS 148
Query: 124 DDKLVEAHGSFHTSHCLTCRKDYSVAWMKERIFAEVIPTCEK------------------ 165
DKLV+ HGSF T+ C+TC + + +I +P C
Sbjct: 149 TDKLVQCHGSFATATCVTCHWNLPGERIFNKIRNLELPLCPYCYKKRREYFPEGYNNKVG 208
Query: 166 -----------------CNGLVKPDIVFFGENLPSRYFHRVDVDFPKADLLLIMGTSLVV 208
G++KPDI FFGE LP+++ + D + DLL+ +GTSL V
Sbjct: 209 VAASQGSMSERPPYILNSYGVLKPDITFFGEALPNKFHKSIREDILECDLLICIGTSLKV 268
Query: 209 QPFCSLVDKVDVDFPKA 225
P +V+ V P+
Sbjct: 269 APVSEIVNMVPSHVPQV 285
Score = 82.6 bits (204), Expect = 2e-17
Identities = 49/206 (23%), Positives = 75/206 (36%), Gaps = 32/206 (15%)
Query: 256 NIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDYSVAWMKEGNLLGRMGITLGLHAGGL 315
NIDNLE AG+ DKLV+ HGSF T+ C+TC + + + + +
Sbjct: 137 NIDNLESYAGISTDKLVQCHGSFATATCVTCHWNLPGERIFNKIRNLELPLCPYCYKKRR 196
Query: 316 SSIPGGAEVFSALCLEFGVHSASAPPHCPRLLINKEKVGVGSRNPLMGLLGLSEGLGFDN 375
P G + G S PP+ G P + G E L
Sbjct: 197 EYFPEGYNNKVGVAASQGSMS-ERPPYILN--------SYGVLKPDITFFG--EALPNKF 245
Query: 376 ENNVRDVFLEGDCD-----------SGCQKLADMLGWGIPLMGL-LGLSEGLGFDNENNV 423
++R+ LE CD + ++ +M+ +P + + + FD
Sbjct: 246 HKSIREDILE--CDLLICIGTSLKVAPVSEIVNMVPSHVPQVLINRDPVKHAEFD----- 298
Query: 424 RDVFLEGDCDSGCQKLADMLGWGIPL 449
+ L G CD +A GW IP
Sbjct: 299 --LSLLGYCDDIAAMVAQKCGWTIPH 322
Score = 36.8 bits (85), Expect = 0.013
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 468 RDVFLEGDCDSGCQKLADMLGW 489
D+ L G CD +A GW
Sbjct: 297 FDLSLLGYCDDIAAMVAQKCGW 318
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1,
nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga
maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A*
2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A*
2h4h_A* 3jr3_A* 2h59_A*
Length = 246
Score = 244 bits (626), Expect = 1e-78
Identities = 68/216 (31%), Positives = 102/216 (47%), Gaps = 40/216 (18%)
Query: 4 AAGIPDFRSPGSGLYDNLEKYKLPHPMAIFELDYFKHRPEAFYTLAKE-LYPGSFKPTPC 62
+GIPDFR P G+Y + +F++D+F PE FY AKE ++P
Sbjct: 27 PSGIPDFRGPN-GIYKK-------YSQNVFDIDFFYSHPEEFYRFAKEGIFPML------ 72
Query: 63 HYFLKLLHQKNLLLRHFTQVYWGSFKPTPCHYFLKLLHQKNLLLRHFTQNIDNLERIAGL 122
KP H L L +K L+ TQNID L + AG
Sbjct: 73 -----------------------QAKPNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAG- 108
Query: 123 PDDKLVEAHGSFHTSHCLTCRKDYSVAWMKERIFAEVIPTCEKCNGLVKPDIVFFGENLP 182
K++E HG+ +C+ C K Y+V + +++ + +P C+ CN L++P+IVFFGENLP
Sbjct: 109 -SKKVIELHGNVEEYYCVRCEKKYTVEDVIKKLESSDVPLCDDCNSLIRPNIVFFGENLP 167
Query: 183 SRYFHRVDVDFPKADLLLIMGTSLVVQPFCSLVDKV 218
+A L++++G+SLVV P L
Sbjct: 168 QDALREAIGLSSRASLMIVLGSSLVVYPAAELPLIT 203
Score = 65.6 bits (161), Expect = 2e-12
Identities = 31/172 (18%), Positives = 57/172 (33%), Gaps = 51/172 (29%)
Query: 256 NIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDYSVAWMKEGNLLGRMGITLGLHAGGL 315
NID L + AG K++E HG+ +C+ C K Y+V + + L + L L
Sbjct: 99 NIDRLHQRAG--SKKVIELHGNVEEYYCVRCEKKYTVEDVIK--KLESSDVPLCDDCNSL 154
Query: 316 ---------SSIPGGA--EVFSA-----LCLEFG----VHSASAPPH------CPRLLIN 349
++P A E L + G V+ A+ P +++N
Sbjct: 155 IRPNIVFFGENLPQDALREAIGLSSRASLMIVLGSSLVVYPAAELPLITVRSGGKLVIVN 214
Query: 350 KEKVGVGSRNPLMGLLGLSEGLGFDNENNVRDVFLEGDCDSGCQKLADMLGW 401
+ FD ++ + D +++ + G
Sbjct: 215 LGET------------------PFD---DIATLKYNMDVVEFARRVMEEGGI 245
Score = 29.0 bits (66), Expect = 3.0
Identities = 2/21 (9%), Positives = 7/21 (33%)
Query: 425 DVFLEGDCDSGCQKLADMLGW 445
+ D +++ + G
Sbjct: 225 TLKYNMDVVEFARRVMEEGGI 245
Score = 29.0 bits (66), Expect = 3.0
Identities = 2/21 (9%), Positives = 7/21 (33%)
Query: 469 DVFLEGDCDSGCQKLADMLGW 489
+ D +++ + G
Sbjct: 225 TLKYNMDVVEFARRVMEEGGI 245
>3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding
domain, structural genomics, struc genomics consortium,
SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens}
Length = 318
Score = 224 bits (573), Expect = 9e-70
Identities = 52/224 (23%), Positives = 77/224 (34%), Gaps = 61/224 (27%)
Query: 4 AAGIPDFRSPGSGLYDNLEKYKLPHPMAIFELDYFKHRPEAFYTLAKELYPGSFKPTPCH 63
A+GIPDFR P G++ E+ P FE
Sbjct: 58 ASGIPDFRGPH-GVWTMEERGLAPKFDTTFE----------------------------- 87
Query: 64 YFLKLLHQKNLLLRHFTQVYWGSFKPTPCHYFLKLLHQKNLLLRHFTQNIDNLERIAGLP 123
S +PT H L L + LL +QN+D L +G P
Sbjct: 88 ----------------------SARPTQTHMALVQLERVGLLRFLVSQNVDGLHVRSGFP 125
Query: 124 DDKLVEAHGSFHTSHCLTCRKDYSVAWMKERIFAE---------VIPTCEKCNGLVKPDI 174
DKL E HG+ C C+ Y + + + C G ++ I
Sbjct: 126 RDKLAELHGNMFVEECAKCKTQYVRDTVVGTMGLKATGRLCTVAKARGLRACRGELRDTI 185
Query: 175 VFFGENLPSRYFHRVDVDFPKADLLLIMGTSLVVQPFCSLVDKV 218
+ + ++LP R D ADL + +GTSL ++P +L
Sbjct: 186 LDWEDSLPDRDLALADEASRNADLSITLGTSLQIRPSGNLPLAT 229
Score = 85.1 bits (211), Expect = 2e-18
Identities = 31/182 (17%), Positives = 47/182 (25%), Gaps = 54/182 (29%)
Query: 256 NIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDYSVAWMKEGNLLGRMGITLGLHAGGL 315
N+D L +G P DKL E HG+ C C+ Y + L G +
Sbjct: 114 NVDGLHVRSGFPRDKLAELHGNMFVEECAKCKTQYVRDTVVGTMGLKATGRLCTVAKARG 173
Query: 316 SSIPGG--------------AEVFSA---------LCLEFG----VHSAS-----APPHC 343
G + L + G + +
Sbjct: 174 LRACRGELRDTILDWEDSLPDRDLALADEASRNADLSITLGTSLQIRPSGNLPLATKRRG 233
Query: 344 PRL-LINKEKVGVGSRNPLMGLLGLSEGLGFDNENNVRDVFLEGDCDSGCQKLADMLGWG 402
RL ++N + D D+ + G D +L LG
Sbjct: 234 GRLVIVNLQPT------------------KHDRH---ADLRIHGYVDEVMTRLMKHLGLE 272
Query: 403 IP 404
IP
Sbjct: 273 IP 274
Score = 36.6 bits (85), Expect = 0.013
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 424 RDVFLEGDCDSGCQKLADMLGWGIP 448
D+ + G D +L LG IP
Sbjct: 250 ADLRIHGYVDEVMTRLMKHLGLEIP 274
Score = 33.1 bits (76), Expect = 0.17
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 468 RDVFLEGDCDSGCQKLADMLGW 489
D+ + G D +L LG
Sbjct: 250 ADLRIHGYVDEVMTRLMKHLGL 271
>3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural
genomics, structural genomics consortium, SGC,
hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A*
Length = 355
Score = 224 bits (572), Expect = 3e-69
Identities = 52/224 (23%), Positives = 77/224 (34%), Gaps = 61/224 (27%)
Query: 4 AAGIPDFRSPGSGLYDNLEKYKLPHPMAIFELDYFKHRPEAFYTLAKELYPGSFKPTPCH 63
A+GIPDFR P G++ E+ P FE
Sbjct: 58 ASGIPDFRGPH-GVWTMEERGLAPKFDTTFE----------------------------- 87
Query: 64 YFLKLLHQKNLLLRHFTQVYWGSFKPTPCHYFLKLLHQKNLLLRHFTQNIDNLERIAGLP 123
S +PT H L L + LL +QN+D L +G P
Sbjct: 88 ----------------------SARPTQTHMALVQLERVGLLRFLVSQNVDGLHVRSGFP 125
Query: 124 DDKLVEAHGSFHTSHCLTCRKDYSVAWMKERIFAE---------VIPTCEKCNGLVKPDI 174
DKL E HG+ C C+ Y + + + C G ++ I
Sbjct: 126 RDKLAELHGNMFVEECAKCKTQYVRDTVVGTMGLKATGRLCTVAKARGLRACRGELRDTI 185
Query: 175 VFFGENLPSRYFHRVDVDFPKADLLLIMGTSLVVQPFCSLVDKV 218
+ + ++LP R D ADL + +GTSL ++P +L
Sbjct: 186 LDWEDSLPDRDLALADEASRNADLSITLGTSLQIRPSGNLPLAT 229
Score = 85.6 bits (212), Expect = 2e-18
Identities = 31/183 (16%), Positives = 48/183 (26%), Gaps = 54/183 (29%)
Query: 256 NIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDYSVAWMKEGNLLGRMGITLGLHAGGL 315
N+D L +G P DKL E HG+ C C+ Y + L G +
Sbjct: 114 NVDGLHVRSGFPRDKLAELHGNMFVEECAKCKTQYVRDTVVGTMGLKATGRLCTVAKARG 173
Query: 316 SSIPGG--------------AEVFSA---------LCLEFG----VHSAS-----APPHC 343
G + L + G + +
Sbjct: 174 LRACRGELRDTILDWEDSLPDRDLALADEASRNADLSITLGTSLQIRPSGNLPLATKRRG 233
Query: 344 PRL-LINKEKVGVGSRNPLMGLLGLSEGLGFDNENNVRDVFLEGDCDSGCQKLADMLGWG 402
RL ++N + D D+ + G D +L + LG
Sbjct: 234 GRLVIVNLQPT------------------KHDRH---ADLRIHGYVDEVMTRLMEHLGLE 272
Query: 403 IPL 405
IP
Sbjct: 273 IPA 275
Score = 37.0 bits (86), Expect = 0.012
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 424 RDVFLEGDCDSGCQKLADMLGWGIPL 449
D+ + G D +L + LG IP
Sbjct: 250 ADLRIHGYVDEVMTRLMEHLGLEIPA 275
Score = 33.2 bits (76), Expect = 0.16
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 468 RDVFLEGDCDSGCQKLADMLGW 489
D+ + G D +L + LG
Sbjct: 250 ADLRIHGYVDEVMTRLMEHLGL 271
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue;
Zn-binding domain, rossmann fold domain; HET: MYK NAD;
2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Length = 290
Score = 170 bits (433), Expect = 2e-49
Identities = 49/214 (22%), Positives = 78/214 (36%), Gaps = 40/214 (18%)
Query: 6 GIPDFRSPGSGLYDNLEKYKLPHPMAIFELDYFKHRPEAFYTLAKELYPGSFKPTPCHYF 65
IP FR + ++ KY P + F PE + + +++
Sbjct: 61 NIPSFRGSSNSIW---SKYD---PRIYGTIWGFWKYPEKIWEVIRDISSDY--------- 105
Query: 66 LKLLHQKNLLLRHFTQVYWGSFKPTPCHYFLKLLHQKNLLLRHFTQNIDNLERIAGLPDD 125
+ H L L L TQN+D L +G +
Sbjct: 106 --------------------EIEINNGHVALSTLESLGYLKSVVTQNVDGLHEASG--NT 143
Query: 126 KLVEAHGSFHTSHCLTCRKDYSVAWM---KERIFAEVIPTCEKCNGLVKPDIVFFGENLP 182
K++ HG+ + C TC K + + K F +P C G+ KP+I+ FGE +
Sbjct: 144 KVISLHGNVFEAVCCTCNKIVKLNKIMLQKTSHFMHQLPPECPCGGIFKPNIILFGEVVS 203
Query: 183 SRYFHRVDVDFPKADLLLIMGTSLVVQPFCSLVD 216
S + + K DLLL++GTS V +L
Sbjct: 204 SDLLKEAEEEIAKCDLLLVIGTSSTVSTATNLCH 237
Score = 46.1 bits (110), Expect = 1e-05
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 256 NIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDYSVAWMKE 297
N+D L +G + K++ HG+ + C TC K + +
Sbjct: 132 NVDGLHEASG--NTKVISLHGNVFEAVCCTCNKIVKLNKIML 171
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family;
enzyme-substrate complex, protein binding,
transcription; HET: ALY MES; 2.00A {Archaeoglobus
fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Length = 253
Score = 154 bits (391), Expect = 7e-44
Identities = 62/212 (29%), Positives = 85/212 (40%), Gaps = 39/212 (18%)
Query: 6 GIPDFRSPGSGLYDNLEKYKLPHPMAIFELDYFKHRPEAFYTLAKELYPGSFKPTPCHYF 65
GIP FR GL+ KY P + + FK P AF+ + E+ F
Sbjct: 31 GIPTFRGED-GLW---RKYD---PEEVASISGFKRNPRAFWEFSMEMKDKLFA------- 76
Query: 66 LKLLHQKNLLLRHFTQVYWGSFKPTPCHYFLKLLHQKNLLLRHFTQNIDNLERIAGLPDD 125
+P P HY + L + ++ TQNID L + AG
Sbjct: 77 ----------------------EPNPAHYAIAELERMGIVKAVITQNIDMLHQRAG--SR 112
Query: 126 KLVEAHGSFHTSHCLTCRKDYSVAWMKERIFAEVIPTCEKCNG-LVKPDIVFFGENLPSR 184
+++E HGS CL C + Y + E IP C KC VKP +V FGE LP R
Sbjct: 113 RVLELHGSMDKLDCLDCHETYDWSEFVEDFNKGEIPRCRKCGSYYVKPRVVLFGEPLPQR 172
Query: 185 YFHRVDVDFPKADLLLIMGTSLVVQPFCSLVD 216
+ D +++G+SLVV P L
Sbjct: 173 TLFEAIEEAKHCDAFMVVGSSLVVYPAAELPY 204
Score = 41.4 bits (98), Expect = 3e-04
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 256 NIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDYSVAWMKE 297
NID L + AG +++E HGS CL C + Y + E
Sbjct: 101 NIDMLHQRAG--SRRVLELHGSMDKLDCLDCHETYDWSEFVE 140
>1m2k_A Silent information regulator 2; protein-ligand complex, gene
regulation; HET: APR; 1.47A {Archaeoglobus fulgidus}
SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A*
1ici_A*
Length = 249
Score = 148 bits (377), Expect = 6e-42
Identities = 54/213 (25%), Positives = 86/213 (40%), Gaps = 40/213 (18%)
Query: 6 GIPDFRSPGSGLYDNLEKYKLPHPMAIFELDYFKHRPEAFYTLAKELYPGSFKPTPCHYF 65
GIP FR GL+ +Y+ P + F PE + + Y +
Sbjct: 28 GIPTFRGKD-GLW---NRYR---PEELANPQAFAKDPEKVW----KWY---------AWR 67
Query: 66 LKLLHQKNLLLRHFTQVYWGSFKPTPCHYFLKLLHQKNLLLRHFTQNIDNLERIAGLPDD 125
++ + +P H L + +L TQN+D+L AG
Sbjct: 68 MEKVFNA---------------QPNKAHQAFAELERLGVLKCLITQNVDDLHERAG--SR 110
Query: 126 KLVEAHGSFHTSHCLTCRKDYSVAWMKERIFAEVIPTCEKCNGLVKPDIVFFGENLPSRY 185
++ HGS C +C + V + +P C+KC L++P +V+ GE LP
Sbjct: 111 NVIHLHGSLRVVRCTSCNNSFEVESAPK---IPPLPKCDKCGSLLRPGVVWAGEMLPPDV 167
Query: 186 FHRVDVDFPKADLLLIMGTSLVVQPFCSLVDKV 218
R + +AD++++ GTS VVQP SL V
Sbjct: 168 LDRAMREVERADVIIVAGTSAVVQPAASLPLIV 200
Score = 41.4 bits (98), Expect = 3e-04
Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 256 NIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDYSVAWMKEGNLLGR 303
N+D+L AG ++ HGS C +C + V + L +
Sbjct: 99 NVDDLHERAG--SRNVIHLHGSLRVVRCTSCNNSFEVESAPKIPPLPK 144
>1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue,
hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP:
c.31.1.5
Length = 235
Score = 137 bits (348), Expect = 7e-38
Identities = 46/217 (21%), Positives = 72/217 (33%), Gaps = 47/217 (21%)
Query: 6 GIPDFRSPGSGLYDNLEKYKLPHPMAIFELDYFKHRPE---AFYTLAKELYPGSFKPTPC 62
GI FR+ GL+ E+++ + + F PE AFY +
Sbjct: 17 GIRTFRAAD-GLW---EEHR---VEDVATPEGFDRDPELVQAFYNARRR----------- 58
Query: 63 HYFLKLLHQKNLLLRHFTQVYWGSFKPTPCHYFL-KLLHQKNLLLRHFTQNIDNLERIAG 121
Q+ +P H L KL TQNIDNL AG
Sbjct: 59 ------------------QLQQPEIQPNAAHLALAKLQDALGDRFLLVTQNIDNLHERAG 100
Query: 122 LPDDKLVEAHGSFHTSHCLTCRKDYSVAWMKERIFAEVIPTCEKCNGLVKPDIVFFGENL 181
+ ++ HG C + + E C + ++P +V+FGE
Sbjct: 101 --NTNVIHMHGELLKVRCSQSGQVLD---WTGDVTPEDKCHCCQFPAPLRPHVVWFGEMP 155
Query: 182 PSRYFHRVDVDFPKADLLLIMGTSLVVQPFCSLVDKV 218
+ + AD+ + +GTS V P V +
Sbjct: 156 LG--MDEIYMALSMADIFIAIGTSGHVYPAAGFVHEA 190
Score = 37.9 bits (89), Expect = 0.004
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 256 NIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDY 290
NIDNL AG + ++ HG C +
Sbjct: 91 NIDNLHERAG--NTNVIHMHGELLKVRCSQSGQVL 123
>3riy_A NAD-dependent deacetylase sirtuin-5; desuccinylase, demalonylase,
posttranslational modification, binding domain, rossmann
fold domain; HET: SLL NAD; 1.55A {Homo sapiens} PDB:
3rig_A* 2b4y_A* 2nyr_A*
Length = 273
Score = 118 bits (298), Expect = 2e-30
Identities = 58/239 (24%), Positives = 82/239 (34%), Gaps = 66/239 (27%)
Query: 6 GIPDFRSPGSGLYDNLEKYKLPHPMAIFELDYFKHRPE---AFYTLAKELYPGSFKPTPC 62
G+P FR G G + K++ + F H P FY
Sbjct: 37 GVPTFRGAG-GYW---RKWQ---AQDLATPLAFAHNPSRVWEFY---------------- 73
Query: 63 HYFLKLLHQKNLLLRHFTQVYWGSFKPTPCHYFL----KLLHQKNLLLRHFTQNIDNLER 118
+ +P H + L ++ + TQNID L R
Sbjct: 74 ----------HYRREVMGSK-----EPNAGHRAIAECETRLGKQGRRVVVITQNIDELHR 118
Query: 119 IAGLPDDKLVEAHGSFHTSHCLTCRKDYS-----------------VAWMKERIFAEVIP 161
AG L+E HGS + C +C I E +P
Sbjct: 119 KAG--TKNLLEIHGSLFKTRCTSCGVVAENYKSPICPALSGKGAPEPGTQDASIPVEKLP 176
Query: 162 TCEK--CNGLVKPDIVFFGENLPSRYFHRVDVDFPKADLLLIMGTSLVVQPFCSLVDKV 218
CE+ C GL++P +V+FGENL VD + DL L++GTS VV P +V
Sbjct: 177 RCEEAGCGGLLRPHVVWFGENLDPAILEEVDRELAHCDLCLVVGTSSVVYPAAMFAPQV 235
Score = 34.5 bits (80), Expect = 0.061
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 256 NIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDYS 291
NID L R AG L+E HGS + C +C
Sbjct: 112 NIDELHRKAG--TKNLLEIHGSLFKTRCTSCGVVAE 145
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.5 bits (117), Expect = 2e-06
Identities = 32/276 (11%), Positives = 77/276 (27%), Gaps = 99/276 (35%)
Query: 20 NLEKYKLP------HPMA---IFEL--------DYFKHRP--------EAFYTLAKELYP 54
+ LP +P I E D +KH E+ L P
Sbjct: 312 DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL---NVLEP 368
Query: 55 GSFKPTPCHYFLKL-LHQKNL-----LLRHFTQVYWGSFKPTPCHYFLKLLHQKNLLLRH 108
++ F +L + + LL + W + + LH+ +L+ +
Sbjct: 369 AEYR----KMFDRLSVFPPSAHIPTILL----SLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420
Query: 109 FTQN--------IDNLERIAGLPD--DKLVEA-----------------------HGSFH 135
++ ++ ++ +V+ H H
Sbjct: 421 PKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH 480
Query: 136 TSHCLTCRK---------DYSVAWMKERIFAEVIPTCEKCNGLVKPDIV-------FFGE 179
+ + D+ +++++I + +G + + + +
Sbjct: 481 LKNIEHPERMTLFRMVFLDFR--FLEQKIRHDSTAWN--ASGSILNTLQQLKFYKPYICD 536
Query: 180 NLPSRYFHRVDVDFPKADLLLIMGTSLVVQPFCSLV 215
N P + R+ D L + +L+ + L+
Sbjct: 537 NDP--KYERLVNAI--LDFLPKIEENLICSKYTDLL 568
Score = 40.6 bits (94), Expect = 0.001
Identities = 60/407 (14%), Positives = 115/407 (28%), Gaps = 112/407 (27%)
Query: 131 HGSFHTS-HCLTCRK---DYSVAWMKERIFAEV------IPTCEKCNGLVKPDIVFFGEN 180
H F T H + + A++ +V I + E+ + I+
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEID-----HII----M 56
Query: 181 LPSRYFHRVDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPKADL-LLIMGTSLVVQP 239
F LL +VQ F V +++ F + + S++ +
Sbjct: 57 SKDA-VSGTLRLF---WTLLSKQEE-MVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM 111
Query: 240 FCSLVDKTNIRGSDSDNID--NLERI----------AGLPDDKLVEAHG----------- 276
+ D+ +D+ N+ R+ L K V G
Sbjct: 112 YIEQRDRLY---NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVAL 168
Query: 277 SFHTSHCLTCRKDYSVAWMKEGNLLGRMGITLGLHAGGLSSIPGGAEVFSALCLEFGVHS 336
S+ + C+ D+ + W+ N + E+ L + +
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSPETVL---------------EMLQKLLYQIDPNW 213
Query: 337 ASAPPHCPRLLINKEKVGVGSRNPLM------GLLGLSEGLGFDNENNVR--DVFLEGDC 388
S H + + + R L LL L N N + + F
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL------LNVQNAKAWNAF----- 262
Query: 389 DSGCQKL--------ADMLGWGIPL-MGLLGLSEGLGFDNENNVRDVFLEG-DCDSGCQK 438
+ C+ L D L + L S L + V+ + L+ DC Q
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL---TPDEVKSLLLKYLDCR--PQD 317
Query: 439 LADMLGWGIPL-MGLLG--LSEG---------LGFDNENNVRDVFLE 473
L + P + ++ + +G + D + + L
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN 364
Score = 39.1 bits (90), Expect = 0.003
Identities = 51/371 (13%), Positives = 98/371 (26%), Gaps = 133/371 (35%)
Query: 11 RSPGSGLYDNLEKY--KLPHPMAIFELDYFKHRPEAFYTLAKELYPGSFKPTPCHYFLKL 68
R P S + + +L + +F Y R + + L + L +P + L
Sbjct: 103 RQP-SMMTRMYIEQRDRLYNDNQVFA-KYNVSRLQPYLKLRQALL--ELRPAK---NV-L 154
Query: 69 LH----------------QKNLLLRHFTQVYWGSFKPTPCHYFLKLLHQKNLLLRHFTQN 112
+ + + +++W + K C+ +L LL N
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK--NCNSPETVLEMLQKLLYQIDPN 212
Query: 113 IDNL-ERIAGLP--------------------------DD----KLVEAHGSFHTSHC-- 139
+ + + + + K A F C
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA---F-NLSCKI 268
Query: 140 -LTCRKDYSVA-----------WMKER-----------IFAEVI-------PTCEKCNG- 168
LT R V + + + + P E
Sbjct: 269 LLTTR-FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR-EVLTTN 326
Query: 169 -LVKPDIVFFGENL---PSR--YFHRVDVDFPKADLLLIMGTSL-VVQP------FCSLV 215
+ E++ + + V+ D L I+ +SL V++P F L
Sbjct: 327 PRR---LSIIAESIRDGLATWDNWKHVNCD----KLTTIIESSLNVLEPAEYRKMFDRLS 379
Query: 216 --DKVDVDFPKADLLLIM-------GTSLVVQPFC--SLVDKTNIRGSDSDNIDNLERIA 264
P LL ++ +VV SLV+K + S I ++
Sbjct: 380 VFPP-SAHIP-TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS--IPSIYLEL 435
Query: 265 GLPDDKLVEAH 275
+ + H
Sbjct: 436 KVKLENEYALH 446
Score = 39.1 bits (90), Expect = 0.003
Identities = 22/131 (16%), Positives = 37/131 (28%), Gaps = 25/131 (19%)
Query: 18 YDNLEKYKLPHPMAIFELDYF-KHRPEAFYTLAKELYPGSFKPTPCHYF-LKLLHQKNLL 75
Y+ + + + + YF H + L +P + + L QK
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSHIG---HHLKNIEHPERMTLFRMVFLDFRFLEQK--- 506
Query: 76 LRHFTQVYWGSFKPTPCHYFLKLLHQKNLLLRHFTQNIDNLERIAGLPDDKLVEAHGSF- 134
+RH W + L L Q + N ER LV A F
Sbjct: 507 IRH-DSTAWNA-----SGSILNTLQQLKFYKPYICDNDPKYER--------LVNAILDFL 552
Query: 135 --HTSHCLTCR 143
+ + +
Sbjct: 553 PKIEENLICSK 563
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 49.3 bits (117), Expect = 3e-06
Identities = 86/503 (17%), Positives = 148/503 (29%), Gaps = 169/503 (33%)
Query: 4 AAGIPDFRSPGSGLYDNLE--KYKLPHPMAIF-----ELDYFKHRPEAFYTLAKELYPGS 56
A P + S L+ + +L +AIF DYF+ E L ++LY +
Sbjct: 132 MAKRPFDKKSNSALFRAVGEGNAQL---VAIFGGQGNTDDYFE---E----L-RDLYQ-T 179
Query: 57 FKPTPCHYFLK-LLHQKNLLLRHFTQVYWGSFKPTPCHYFLKLLHQKNLLLRHFTQNIDN 115
+ + L+ L + FTQ ++
Sbjct: 180 YHV-----LVGDLIKFSAETLSEL------IRTTLDAE-------------KVFTQGLNI 215
Query: 116 ---LERIAGLPD-DKLVEAHGSF------HTSH-CLTCRK-DYSVAWMKERIFAEVIPTC 163
LE + PD D L+ S +H +T + ++ ++ +
Sbjct: 216 LEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKG--ATGH 273
Query: 164 EKCNGLVKPDIVFFGENLPSRYFHRVDVDFPKADLLLIMGT-SLVVQPFCSLVDKVDVDF 222
+ GLV + ++ S F +L +G P SL + D
Sbjct: 274 SQ--GLVTAVAIAETDSWES--FFVSVRKAIT--VLFFIGVRCYEAYPNTSLPPSILEDS 327
Query: 223 PKAD------LLLIMGTSLV-VQPFCSLVDKTNIRGSDSDNID----NLER---IAGLPD 268
+ + +L I + VQ V+KTN ++ N + ++G P
Sbjct: 328 LENNEGVPSPMLSISNLTQEQVQ---DYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQ 384
Query: 269 DKLVEAHGSFHTSHCLTCRKDYSVAWMKEGNLLGRMGITLGLHAG-GL--SSIPGGAE-- 323
L LT RK A GL S IP
Sbjct: 385 S-LY--------GLNLTLRK---------------------AKAPSGLDQSRIPFSERKL 414
Query: 324 VFSALCLEFGVHSASAPPHCPRLLINKEKVGVGSRNPLMGLLGLSEGLG---FDNEN--N 378
FS F ++P H LL+ + + + ++ + +D + +
Sbjct: 415 KFS---NRFLP--VASPFHSH-LLVPASDL-INKDLVKNNVSFNAKDIQIPVYDTFDGSD 467
Query: 379 VRDVFLEGDCDSGCQKLADML-----GW--------------GIPLMGLLGLS------- 412
+R + S +++ D + W G P G GL
Sbjct: 468 LRVL-----SGSISERIVDCIIRLPVKWETTTQFKATHILDFG-PG-GASGLGVLTHRNK 520
Query: 413 EGLGFDNENNVRDVFLEGDCDSG 435
+G G VR V + G D
Sbjct: 521 DGTG------VR-VIVAGTLDIN 536
Score = 30.4 bits (68), Expect = 1.6
Identities = 11/49 (22%), Positives = 17/49 (34%), Gaps = 13/49 (26%)
Query: 356 GSRNPLMGL-LGLSEGLGFDNENNVRDVFLEGDCDSGCQKLADMLGWGI 403
GS+ MG+ L + +DV+ D D G+ I
Sbjct: 1625 GSQEQGMGMDL-------YKTSKAAQDVWNRAD-----NHFKDTYGFSI 1661
>3m8t_A 'BLR6230 protein; subclass B3 beta-lactamase, zinc enzyme,
sulfonamide complex hydrolase-hydrolase inhibitor
complex; HET: 4NZ; 1.33A {Bradyrhizobium japonicum} PDB:
3lvz_A* 2gmn_A
Length = 294
Score = 33.8 bits (77), Expect = 0.12
Identities = 11/71 (15%), Positives = 18/71 (25%), Gaps = 4/71 (5%)
Query: 212 CSLVDKVDVDFPKADLLLIMGTSLVVQPFCSLVDKTNIRGSDSDNIDNLERIAGLPDDKL 271
+ D + L GT LV + G D + + D L
Sbjct: 183 SWEMTVKDGKEDREVLFFCSGTVA----LNRLVGQPTYAGIVDDYRATFAKAKAMKIDVL 238
Query: 272 VEAHGSFHTSH 282
+ H +
Sbjct: 239 LGPHPEVYGMQ 249
>1sq1_A Chorismate synthase; structural genomics, bifunctional alpha/beta
tetrameric PROT protein structure initiative; 2.80A
{Campylobacter jejuni} SCOP: d.258.1.1
Length = 370
Score = 30.1 bits (69), Expect = 1.5
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 104 LLLRHFTQNIDNLERIAGLPDDKLVEAHGSFH 135
LL + + N++NL+ GL + H H
Sbjct: 343 CLLLNASANLNNLKNAYGLKLEH----HHHHH 370
>1k07_A FEZ-1 beta-lactamase; monomer with alpha-beta/BETA-alpha fold. two
monomers PER AS UNIT., hydrolase; HET: GOL; 1.65A
{Fluoribacter gormanii} SCOP: d.157.1.1 PDB: 1jt1_A*
1l9y_A
Length = 263
Score = 29.9 bits (67), Expect = 1.8
Identities = 9/71 (12%), Positives = 22/71 (30%), Gaps = 2/71 (2%)
Query: 212 CSLVDKVDVDFPKADLLLIMGTSLVVQPFCSLVDKTNIRGSDSDNIDNLERIAGLPDDKL 271
+ K+ + ++I + P LVD D +++ + + D
Sbjct: 154 TTWTMKLKDHGKQYQAVIIGSIGVN--PGYKLVDNITYPKIAEDYKHSIKVLESMRCDIF 211
Query: 272 VEAHGSFHTSH 282
+ +H
Sbjct: 212 LGSHAGMFDLK 222
>2gi4_A Possible phosphotyrosine protein phosphatase; low molecular weight,
protein tyrosine phosphatase, bacterial phosphatase; NMR
{Campylobacter jejuni}
Length = 156
Score = 29.0 bits (66), Expect = 2.2
Identities = 7/51 (13%), Positives = 15/51 (29%), Gaps = 21/51 (41%)
Query: 221 DFPKADLLLIMGTSLVVQPFCSLVDKTNIRGSDSDNIDNLERIAGLPDDKL 271
++D L+ M D+ N N+ + +K+
Sbjct: 78 LCDESDFLITM---------------------DNSNFKNVLKNFTNTQNKV 107
>3p3b_A Mandelate racemase/muconate lactonizing protein; enolase
superfamily fold, galacturonate dehydratase, D-tartr
galacturonate, lyase; HET: TAR; 1.65A {Geobacillus SP}
PDB: 3ops_A* 3n4f_A* 3qpe_A*
Length = 392
Score = 29.3 bits (66), Expect = 3.5
Identities = 14/109 (12%), Positives = 38/109 (34%), Gaps = 22/109 (20%)
Query: 114 DNLERIAGL-----PD-DKLVEAHGSFHTSHCLT-CRK--DYSVAWMKERIFAEVIPTCE 164
++ + G+ P +++A+ +++ + D ++ W++E + +
Sbjct: 186 RDIAIVRGISEVAGPAGKIMIDANNAYNLNLTKEVLAALSDVNLYWLEEAFHEDEALYED 245
Query: 165 KCNGLVK--PDI-VFFGENLPSRYFHRVDVDFPKADLLLIMGTSLVVQP 210
L + ++ + GE L S + G V+Q
Sbjct: 246 LKEWLGQRGQNVLIADGEGLASPHLIE----------WATRGRVDVLQY 284
>3mt5_A Potassium large conductance calcium-activated CHA subfamily M,
alpha member 1; potassium channel, membrane protein,
transport protein; 3.00A {Homo sapiens} PDB: 3u6n_A
Length = 726
Score = 27.7 bits (60), Expect = 9.8
Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 8/78 (10%)
Query: 172 PDIVFFGENLPSRYFHRVDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPKADLLLIM 231
IVF G + +FPK + ++ GT L S D V+ D+ +I+
Sbjct: 413 KHIVFVGSIEYLKREWETLHNFPK--VSILPGTPL------SRADLRAVNINLCDMCVIL 464
Query: 232 GTSLVVQPFCSLVDKTNI 249
+ SL DK I
Sbjct: 465 SANQNNIDDTSLQDKECI 482
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.143 0.457
Gapped
Lambda K H
0.267 0.0681 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,981,660
Number of extensions: 494761
Number of successful extensions: 1167
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1091
Number of HSP's successfully gapped: 83
Length of query: 494
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 397
Effective length of database: 3,993,456
Effective search space: 1585402032
Effective search space used: 1585402032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.6 bits)