RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11832
(494 letters)
>d1j8fa_ c.31.1.5 (A:) Sirt2 histone deacetylase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 323
Score = 162 bits (410), Expect = 2e-46
Identities = 136/267 (50%), Positives = 169/267 (63%), Gaps = 35/267 (13%)
Query: 4 AAGIPDFRSPGSGLYDNLEKYKLPHPMAIFELDYFKHRPEAFYTLAKELYPGSFKPTPCH 63
+AGIPDFRSP +GLYDNLEKY LP+P AIFE+ YFK PE F+ LAKELYP
Sbjct: 57 SAGIPDFRSPSTGLYDNLEKYHLPYPEAIFEISYFKKHPEPFFALAKELYP--------- 107
Query: 64 YFLKLLHQKNLLLRHFTQVYWGSFKPTPCHYFLKLLHQKNLLLRHFTQNIDNLERIAGLP 123
G FKPT CHYF++LL K LLLR +TQNID LERIAGL
Sbjct: 108 ---------------------GQFKPTICHYFMRLLKDKGLLLRCYTQNIDTLERIAGLE 146
Query: 124 DDKLVEAHGSFHTSHCLT--CRKDYSVAWMKERIFAEVIPTCEKCNGLVKPDIVFFGENL 181
+ LVEAHG+F+TSHC++ CR +Y ++WMKE+IF+EV P CE C LVKPDIVFFGE+L
Sbjct: 147 QEDLVEAHGTFYTSHCVSASCRHEYPLSWMKEKIFSEVTPKCEDCQSLVKPDIVFFGESL 206
Query: 182 PSRYFHRVDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPKADLLLIMGTSLVVQPFC 241
P+R+F + DF K DLLL+MGTSL VQPF SL+ K + P+ LL+ + PF
Sbjct: 207 PARFFSCMQSDFLKVDLLLVMGTSLQVQPFASLISKAPLSTPR--LLINKEKAGQSDPFL 264
Query: 242 SLVDKTNIRGSDSDNIDNLERIAGLPD 268
++ G D D+ +A L +
Sbjct: 265 GMIMGLGG-GMDFDSKKAYRDVAWLGE 290
Score = 70.9 bits (173), Expect = 4e-14
Identities = 65/171 (38%), Positives = 84/171 (49%), Gaps = 26/171 (15%)
Query: 256 NIDNLERIAGLPDDKLVEAHGSFHTSHCLTC--RKDYSVAWMKEGNL------------L 301
NID LERIAGL + LVEAHG+F+TSHC++ R +Y ++WMKE L
Sbjct: 135 NIDTLERIAGLEQEDLVEAHGTFYTSHCVSASCRHEYPLSWMKEKIFSEVTPKCEDCQSL 194
Query: 302 GRMGITLGLHAGGLSSIPGGAEVFSA--LCLEFG----VHSAS-----APPHCPRLLINK 350
+ I + F L L G V + AP PRLLINK
Sbjct: 195 VKPDIVFFGESLPARFFSCMQSDFLKVDLLLVMGTSLQVQPFASLISKAPLSTPRLLINK 254
Query: 351 EKVGVGSRNPLMGLLGLSEGLGFDNENNVRDVFLEGDCDSGCQKLADMLGW 401
EK G L ++GL G+ FD++ RDV G+CD GC LA++LGW
Sbjct: 255 EKAGQSDPF-LGMIMGLGGGMDFDSKKAYRDVAWLGECDQGCLALAELLGW 304
Score = 54.0 bits (129), Expect = 1e-08
Identities = 19/41 (46%), Positives = 28/41 (68%)
Query: 453 LGLSEGLGFDNENNVRDVFLEGDCDSGCQKLADMLGWGKDI 493
+GL G+ FD++ RDV G+CD GC LA++LGW K++
Sbjct: 268 MGLGGGMDFDSKKAYRDVAWLGECDQGCLALAELLGWKKEL 308
>d1q1aa_ c.31.1.5 (A:) Hst2 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 289
Score = 137 bits (346), Expect = 1e-37
Identities = 93/251 (37%), Positives = 126/251 (50%), Gaps = 49/251 (19%)
Query: 4 AAGIPDFRSPGSGLYDNLEKYKLPHPMAIFELDYFKHRPEAFYTLAKELYPGSFKPTPCH 63
+ GIPDFRSPG+GLY NL + KLP+P A+F++D+F+ P FYTLAKELY
Sbjct: 34 SCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTLAKELY---------- 83
Query: 64 YFLKLLHQKNLLLRHFTQVYWGSFKPTPCHYFLKLLHQKNLLLRHFTQNIDNLERIAGLP 123
G+F+P+ HY LKL K++L R +TQNID LER AG+
Sbjct: 84 --------------------PGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVK 123
Query: 124 DDKLVEAHGSFHTSHCLTCRKDYSVAWMKERIFAEVI---PTCEKCNGLVKPDIVFFGEN 180
DD ++EAHGSF HC+ C K Y K ++ I C+ C LVKP IVFFGE+
Sbjct: 124 DDLIIEAHGSFAHCHCIGCGKVYPPQVFKSKLAEHPIKDFVKCDVCGELVKPAIVFFGED 183
Query: 181 LPSRYFHRVDVDFPKADLLLIMGTSLVVQPFCSLVDKVDVDFPKADLLLIMGTSLVVQPF 240
LP + D + + L++++GTSL V PF
Sbjct: 184 LPDSFSETWLNDSEWLREKITTSGKHP----------------QQPLVIVVGTSLAVYPF 227
Query: 241 CSLVDKTNIRG 251
SL ++ +
Sbjct: 228 ASLPEEIPRKV 238
Score = 41.4 bits (96), Expect = 1e-04
Identities = 14/63 (22%), Positives = 20/63 (31%), Gaps = 17/63 (26%)
Query: 339 APPHCPRLLINKEKVGVGSRNPLMGLLGLSEGLGFDNENNVRDVFLEGDCDSGCQKLADM 398
P R+L N E VG F D+ + D ++L +
Sbjct: 234 IPRKVKRVLCNLETVG-----------------DFKANKRPTDLIVHQYSDEFAEQLVEE 276
Query: 399 LGW 401
LGW
Sbjct: 277 LGW 279
Score = 36.8 bits (84), Expect = 0.004
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 460 GFDNENNVRDVFLEGDCDSGCQKLADMLGWGKDI 493
F D+ + D ++L + LGW +D
Sbjct: 250 DFKANKRPTDLIVHQYSDEFAEQLVEELGWQEDF 283
Score = 34.9 bits (79), Expect = 0.018
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 416 GFDNENNVRDVFLEGDCDSGCQKLADMLGW 445
F D+ + D ++L + LGW
Sbjct: 250 DFKANKRPTDLIVHQYSDEFAEQLVEELGW 279
>d2b4ya1 c.31.1.5 (A:36-302) NAD-dependent deacetylase sirtuin-5
{Human (Homo sapiens) [TaxId: 9606]}
Length = 267
Score = 115 bits (289), Expect = 7e-30
Identities = 59/234 (25%), Positives = 83/234 (35%), Gaps = 52/234 (22%)
Query: 4 AAGIPDFRSPGSGLYDNLEKYKLPHPMAIFELDYFKHRPEAFYTLAKELYPGSFKPTPCH 63
+G+P FR G G + + L P+A R FY +E+ GS +P H
Sbjct: 29 ESGVPTFRGAG-GYWRKWQAQDLATPLAFAH---NPSRVWEFYHYRREVM-GSKEPNAGH 83
Query: 64 YFLKLLHQKNLLLRHFTQVYWGSFKPTPCHYFLKLLHQKNLLLRHFTQNIDNLERIAGLP 123
+ L ++ + TQNID L R AG
Sbjct: 84 RAI--------------------------AECETRLGKQGRRVVVITQNIDELHRKAG-- 115
Query: 124 DDKLVEAHGSFHTSHCLTCRKDYSVAW-----------------MKERIFAEVIP--TCE 164
L+E HGS + C +C I E +P
Sbjct: 116 TKNLLEIHGSLFKTRCTSCGVVAENYKSPICPALSGKGAPEPGTQDASIPVEKLPRCEEA 175
Query: 165 KCNGLVKPDIVFFGENLPSRYFHRVDVDFPKADLLLIMGTSLVVQPFCSLVDKV 218
C GL++P +V+FGENL VD + DL L++GTS VV P +V
Sbjct: 176 GCGGLLRPHVVWFGENLDPAILEEVDRELAHCDLCLVVGTSSVVYPAAMFAPQV 229
Score = 32.9 bits (74), Expect = 0.074
Identities = 14/40 (35%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 256 NIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDYSVAWM 295
NID L R AG L+E HGS + C +C
Sbjct: 106 NIDELHRKAG--TKNLLEIHGSLFKTRCTSCGVVAENYKS 143
>d1s5pa_ c.31.1.5 (A:) NAD-dependent deacetylase CobB {Escherichia
coli [TaxId: 562]}
Length = 235
Score = 113 bits (284), Expect = 1e-29
Identities = 44/216 (20%), Positives = 68/216 (31%), Gaps = 41/216 (18%)
Query: 4 AAGIPDFRSPGSGLYDNLEKYKLPHPMAIFELDYFKHRPEAFYTLAKELYPGSFKPTPCH 63
+GI FR+ GL++ + P + F PE
Sbjct: 15 ESGIRTFRAAD-GLWEEHRVEDVATP------EGFDRDPELVQAFYN------------- 54
Query: 64 YFLKLLHQKNLLLRHFTQVYWGSFKPTPCHYFL-KLLHQKNLLLRHFTQNIDNLERIAGL 122
Q+ +P H L KL TQNIDNL AG
Sbjct: 55 -------------ARRRQLQQPEIQPNAAHLALAKLQDALGDRFLLVTQNIDNLHERAG- 100
Query: 123 PDDKLVEAHGSFHTSHCLTCRKDYSVAWMKERIFAEVIPTCEKCNGLVKPDIVFFGENLP 182
+ ++ HG C + V + E C + ++P +V+FGE
Sbjct: 101 -NTNVIHMHGELLKVRCSQSGQ---VLDWTGDVTPEDKCHCCQFPAPLRPHVVWFGEMPL 156
Query: 183 SRYFHRVDVDFPKADLLLIMGTSLVVQPFCSLVDKV 218
+ + AD+ + +GTS V P V +
Sbjct: 157 --GMDEIYMALSMADIFIAIGTSGHVYPAAGFVHEA 190
Score = 30.5 bits (68), Expect = 0.31
Identities = 24/167 (14%), Positives = 41/167 (24%), Gaps = 42/167 (25%)
Query: 256 NIDNLERIAGLPDDKLVEAHGSFHTSHCLTCRKDYSVAWMKEGNLLGRMGITLGLHAGGL 315
NIDNL AG + ++ HG C + +
Sbjct: 91 NIDNLHERAG--NTNVIHMHGELLKVRCSQSGQVLDWTGDVTPEDKCHCCQFPAPLRPHV 148
Query: 316 SSI----PGGAEVFSA-----LCLEFG----VHSASAPPH------CPRLLINKEKVGVG 356
G E++ A + + G V+ A+ H + +N E VG
Sbjct: 149 VWFGEMPLGMDEIYMALSMADIFIAIGTSGHVYPAAGFVHEAKLHGAHTVELNLEPSQVG 208
Query: 357 SRNPLMGLLGLSEGLGFDNENNVRDVFLEGDCDSGCQKLADMLGWGI 403
+ G + + L G+
Sbjct: 209 NEF---------------------AEKYYGPASQVVPEFVEKLLKGL 234
>d1yc5a1 c.31.1.5 (A:1-245) NAD-dependent deacetylase NpdA
{Thermotoga maritima [TaxId: 2336]}
Length = 245
Score = 109 bits (273), Expect = 7e-28
Identities = 67/213 (31%), Positives = 99/213 (46%), Gaps = 38/213 (17%)
Query: 4 AAGIPDFRSPGSGLYDNLEKYKLPHPMAIFELDYFKHRPEAFYTLAKELYPGSFKPTPCH 63
+GIPDFR P G+Y + +F++D+F PE FY AKE
Sbjct: 27 PSGIPDFRGPN-GIYKK-------YSQNVFDIDFFYSHPEEFYRFAKEGIFP-------- 70
Query: 64 YFLKLLHQKNLLLRHFTQVYWGSFKPTPCHYFLKLLHQKNLLLRHFTQNIDNLERIAGLP 123
KP H L L +K L+ TQNID L + AG
Sbjct: 71 --------------------MLQAKPNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAG-- 108
Query: 124 DDKLVEAHGSFHTSHCLTCRKDYSVAWMKERIFAEVIPTCEKCNGLVKPDIVFFGENLPS 183
K++E HG+ +C+ C K Y+V + +++ + +P C+ CN L++P+IVFFGENLP
Sbjct: 109 SKKVIELHGNVEEYYCVRCEKKYTVEDVIKKLESSDVPLCDDCNSLIRPNIVFFGENLPQ 168
Query: 184 RYFHRVDVDFPKADLLLIMGTSLVVQPFCSLVD 216
+A L++++G+SLVV P L
Sbjct: 169 DALREAIGLSSRASLMIVLGSSLVVYPAAELPL 201
>d1ma3a_ c.31.1.5 (A:) AF0112, Sir2 homolog (Sir2-AF2) {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 252
Score = 109 bits (272), Expect = 1e-27
Identities = 56/216 (25%), Positives = 83/216 (38%), Gaps = 39/216 (18%)
Query: 4 AAGIPDFRSPGSGLYDNLEKYKLPHPMAIFELDYFKHRPEAFYTLAKELYPGSFKPTPCH 63
+GIP FR GL+ P + + FK P AF+ + E+ F
Sbjct: 29 ESGIPTFRGED-GLWRKY------DPEEVASISGFKRNPRAFWEFSMEMKDKLFA----- 76
Query: 64 YFLKLLHQKNLLLRHFTQVYWGSFKPTPCHYFLKLLHQKNLLLRHFTQNIDNLERIAGLP 123
+P P HY + L + ++ TQNID L + AG
Sbjct: 77 ------------------------EPNPAHYAIAELERMGIVKAVITQNIDMLHQRAG-- 110
Query: 124 DDKLVEAHGSFHTSHCLTCRKDYSVAWMKERIFA-EVIPTCEKCNGLVKPDIVFFGENLP 182
+++E HGS CL C + Y + E E+ + + VKP +V FGE LP
Sbjct: 111 SRRVLELHGSMDKLDCLDCHETYDWSEFVEDFNKGEIPRCRKCGSYYVKPRVVLFGEPLP 170
Query: 183 SRYFHRVDVDFPKADLLLIMGTSLVVQPFCSLVDKV 218
R + D +++G+SLVV P L
Sbjct: 171 QRTLFEAIEEAKHCDAFMVVGSSLVVYPAAELPYIA 206
>d1m2ka_ c.31.1.5 (A:) AF1676, Sir2 homolog (Sir2-AF1?) {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 249
Score = 103 bits (258), Expect = 7e-26
Identities = 52/215 (24%), Positives = 80/215 (37%), Gaps = 40/215 (18%)
Query: 4 AAGIPDFRSPGSGLYDNLEKYKLPHPMAIFELDYFKHRPEAFYTLAKELYPGSFKPTPCH 63
+GIP FR GL++ P + F PE +
Sbjct: 26 ESGIPTFRGKD-GLWNRY------RPEELANPQAFAKDPEKVWKWYAWRMEK-------- 70
Query: 64 YFLKLLHQKNLLLRHFTQVYWGSFKPTPCHYFLKLLHQKNLLLRHFTQNIDNLERIAGLP 123
+ +P H L + +L TQN+D+L AG
Sbjct: 71 --------------------VFNAQPNKAHQAFAELERLGVLKCLITQNVDDLHERAG-- 108
Query: 124 DDKLVEAHGSFHTSHCLTCRKDYSVAWMKERIFAEVIPTCEKCNGLVKPDIVFFGENLPS 183
++ HGS C +C + V + +P C+KC L++P +V+ GE LP
Sbjct: 109 SRNVIHLHGSLRVVRCTSCNNSFEVESAPKI---PPLPKCDKCGSLLRPGVVWAGEMLPP 165
Query: 184 RYFHRVDVDFPKADLLLIMGTSLVVQPFCSLVDKV 218
R + +AD++++ GTS VVQP SL V
Sbjct: 166 DVLDRAMREVERADVIIVAGTSAVVQPAASLPLIV 200
>d2gmna1 d.157.1.1 (A:29-292) Zn metallo-beta-lactamase
{Bradyrhizobium japonicum [TaxId: 375]}
Length = 264
Score = 34.2 bits (77), Expect = 0.027
Identities = 11/71 (15%), Positives = 18/71 (25%), Gaps = 4/71 (5%)
Query: 212 CSLVDKVDVDFPKADLLLIMGTSLVVQPFCSLVDKTNIRGSDSDNIDNLERIAGLPDDKL 271
+ D + L GT LV + G D + + D L
Sbjct: 155 SWEMTVKDGKEDREVLFFCSGTVA----LNRLVGQPTYAGIVDDYRATFAKAKAMKIDVL 210
Query: 272 VEAHGSFHTSH 282
+ H +
Sbjct: 211 LGPHPEVYGMQ 221
Score = 26.2 bits (56), Expect = 8.9
Identities = 3/28 (10%), Positives = 7/28 (25%)
Query: 111 QNIDNLERIAGLPDDKLVEAHGSFHTSH 138
+ + D L+ H +
Sbjct: 194 DYRATFAKAKAMKIDVLLGPHPEVYGMQ 221
>d1k07a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Fluoribacter
gormanii, (Legionella gormanii) FEZ-1 [TaxId: 464]}
Length = 262
Score = 33.0 bits (74), Expect = 0.057
Identities = 20/174 (11%), Positives = 49/174 (28%), Gaps = 18/174 (10%)
Query: 113 IDNLERIAGLPDDK---LVEAHGSFHTSHCLTCRKDYSVAWMKERIFAEVIPTCEKCNGL 169
+++++ D L+ H + ++ +M
Sbjct: 50 KASIKKLGFKFSDTKILLISHAHFDHAAGSELIKQQTKAKYMVMD------EDVSVILSG 103
Query: 170 VKPDIVFFGENLPSRYFHRVDVDFPKADLLLIMGTSLVVQPF-------CSLVDKVDVDF 222
K D + ++ VD + + + GT L + K+
Sbjct: 104 GKSDFHYANDSSTYFTQSTVDKVLHDGERVELGGTVLTAHLTPGHTRGCTTWTMKLKDHG 163
Query: 223 PKADLLLIMGTSLVVQPFCSLVDKTNIRGSDSDNIDNLERIAGLPDDKLVEAHG 276
+ ++I + P LVD D +++ + + D + +H
Sbjct: 164 KQYQAVIIGSIGVN--PGYKLVDNITYPKIAEDYKHSIKVLESMRCDIFLGSHA 215
>d2aioa1 d.157.1.1 (A:23-311) Zn metallo-beta-lactamase {Xanthomonas
maltophilia [TaxId: 40324]}
Length = 266
Score = 28.8 bits (63), Expect = 1.6
Identities = 10/59 (16%), Positives = 15/59 (25%), Gaps = 1/59 (1%)
Query: 218 VDVDFPKADLLLIMGTSLVVQPFCSLVDKTNIRGSDSDNIDNLERIAGLPDDKLVEAHG 276
+ + SL P L D + + LP D L+ H
Sbjct: 168 WTDTRNGKPVRIAYADSLSA-PGYQLQGNPRYPHLIEDYRRSFATVRALPCDVLLTPHP 225
>d1tme1_ b.121.4.1 (1:) Theilovirus capsid proteins {Theiler's
murine encephalomyelitis virus, strain da [TaxId:
12124]}
Length = 256
Score = 28.0 bits (62), Expect = 2.8
Identities = 11/69 (15%), Positives = 15/69 (21%)
Query: 42 PEAFYTLAKELYPGSFKPTPCHYFLKLLHQKNLLLRHFTQVYWGSFKPTPCHYFLKLLHQ 101
F +L TP F + + Q W T +
Sbjct: 53 ESTFVYQENDLRLNCLLLTPLPSFCPDSTSGPVKTKAPVQWRWVRSGGTTNFPLMTKQDY 112
Query: 102 KNLLLRHFT 110
L FT
Sbjct: 113 AFLCFSPFT 121
>d1oaha_ a.138.1.3 (A:) Cytochrome c nitrite reductase
{Desulfovibrio desulfuricans [TaxId: 876]}
Length = 482
Score = 27.7 bits (61), Expect = 3.2
Identities = 4/19 (21%), Positives = 10/19 (52%)
Query: 139 CLTCRKDYSVAWMKERIFA 157
C C D + ++++R+
Sbjct: 312 CRQCHADKTGEYLRQRVLY 330
>d1srqa_ e.55.1.1 (A:) Rap1 GTPase-activating protein 1, Rap1GAP
{Human (Homo sapiens) [TaxId: 9606]}
Length = 336
Score = 27.5 bits (61), Expect = 3.3
Identities = 19/113 (16%), Positives = 38/113 (33%), Gaps = 8/113 (7%)
Query: 312 AGGLSSIPGGAEVFSALCLEFGVHSASAP--PHCPRLLINKEKVGVGSRNPLMGLLGLSE 369
L+ P ++ +C + V P RL++ ++ + S N G++
Sbjct: 67 ISCLTEFPNVVQMAKLVCEDVNVDRFYPVLYPKASRLIVTFDEHVI-SNNFKFGVIYQKL 125
Query: 370 GLGFDNENNVRDVFLEGDCDSGCQKLADMLGWGIPLMGLLGLSEGLGFDNENN 422
G + E +F + + + LG + L G GL +
Sbjct: 126 GQTSEEE-----LFSTNEESPAFVEFLEFLGQKVKLQDFKGFRGGLDVTHGQT 173
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.143 0.457
Gapped
Lambda K H
0.267 0.0416 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,971,813
Number of extensions: 95547
Number of successful extensions: 230
Number of sequences better than 10.0: 1
Number of HSP's gapped: 210
Number of HSP's successfully gapped: 29
Length of query: 494
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 405
Effective length of database: 1,185,626
Effective search space: 480178530
Effective search space used: 480178530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)