BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11834
(230 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3Q91|A Chain A, Crystal Structure Of Human Uridine Diphosphate Glucose
Pyrophosphatase (Nudt14)
pdb|3Q91|C Chain C, Crystal Structure Of Human Uridine Diphosphate Glucose
Pyrophosphatase (Nudt14)
pdb|3Q91|B Chain B, Crystal Structure Of Human Uridine Diphosphate Glucose
Pyrophosphatase (Nudt14)
pdb|3Q91|D Chain D, Crystal Structure Of Human Uridine Diphosphate Glucose
Pyrophosphatase (Nudt14)
Length = 218
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/120 (44%), Positives = 74/120 (61%), Gaps = 3/120 (2%)
Query: 104 PAELGVTLEFCAGIVDK-NKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQ 162
P GVT+E CAG+VD+ SL E+A +E EECGY + L ++ T+ SGVG G RQ
Sbjct: 90 PGSAGVTVELCAGLVDQPGLSLEEVACKEAWEECGYHLAPSDLRRVATYWSGVGLTGSRQ 149
Query: 163 TLFFVEVTDDMKVNSGGGVDE--ELIEVVEMGLEEAREYLAQDEVRSPSGFLFAMHWFLA 220
T+F+ EVTD + GGG+ E ELIEVV + LE A+ + ++ G +F + WFL+
Sbjct: 150 TMFYTEVTDAQRSGPGGGLVEEGELIEVVHLPLEGAQAFADDPDIPKTLGVIFGVSWFLS 209
>pdb|3O6Z|A Chain A, Structure Of The D152a E.Coli Gdp-Mannose Hydrolase (Yffh)
In Complex With Mg++
pdb|3O6Z|B Chain B, Structure Of The D152a E.Coli Gdp-Mannose Hydrolase (Yffh)
In Complex With Mg++
Length = 191
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Query: 106 ELGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLF 165
E G +E CAG++D ++ I R+E +EE GY+V ++ K+ G + F
Sbjct: 76 ESGQLIESCAGLLDNDEPEVCI-RKEAIEETGYEVG--EVRKLFELYMSPGGVTELIHFF 132
Query: 166 FVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQDEVRSPSGFLF 213
E +D+ + N+GGGV++E IEV+E+ +A E + E+R L
Sbjct: 133 IAEYSDNQRANAGGGVEDEAIEVLELPFSQALEMIKTGEIRDGKTVLL 180
>pdb|3O52|A Chain A, Structure Of The E.Coli Gdp-Mannose Hydrolase (Yffh) In
Complex With Tartrate
pdb|3O52|B Chain B, Structure Of The E.Coli Gdp-Mannose Hydrolase (Yffh) In
Complex With Tartrate
pdb|3O52|C Chain C, Structure Of The E.Coli Gdp-Mannose Hydrolase (Yffh) In
Complex With Tartrate
pdb|3O52|D Chain D, Structure Of The E.Coli Gdp-Mannose Hydrolase (Yffh) In
Complex With Tartrate
pdb|3O52|E Chain E, Structure Of The E.Coli Gdp-Mannose Hydrolase (Yffh) In
Complex With Tartrate
Length = 191
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Query: 106 ELGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLF 165
E G +E CAG++D ++ I R+E +EE GY+V ++ K+ G + F
Sbjct: 76 ESGQLIESCAGLLDNDEPEVCI-RKEAIEETGYEVG--EVRKLFELYMSPGGVTELIHFF 132
Query: 166 FVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQDEVRSPSGFLF 213
E +D+ + N+GGGV++E IEV+E+ +A E + E+R L
Sbjct: 133 IAEYSDNQRANAGGGVEDEDIEVLELPFSQALEMIKTGEIRDGKTVLL 180
>pdb|1VIU|A Chain A, Crystal Structure Of Putative Adp Ribose Pyrophosphatase
pdb|1VIU|B Chain B, Crystal Structure Of Putative Adp Ribose Pyrophosphatase
pdb|1VIU|C Chain C, Crystal Structure Of Putative Adp Ribose Pyrophosphatase
pdb|1VIU|D Chain D, Crystal Structure Of Putative Adp Ribose Pyrophosphatase
Length = 203
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Query: 106 ELGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLF 165
E G +E CAG++D ++ I R+E +EE GY+V ++ K+ G + F
Sbjct: 78 ESGQLIESCAGLLDNDEPEVCI-RKEAIEETGYEVG--EVRKLFELYXSPGGVTELIHFF 134
Query: 166 FVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQDEVRSPSGFLF 213
E +D+ + N+GGGV++E IEV+E+ +A E + E+R L
Sbjct: 135 IAEYSDNQRANAGGGVEDEDIEVLELPFSQALEXIKTGEIRDGKTVLL 182
>pdb|3O61|A Chain A, Structure Of The E100a E.Coli Gdp-Mannose Hydrolase (Yffh)
In Complex With Gdp-Mannose And Mg++
pdb|3O61|B Chain B, Structure Of The E100a E.Coli Gdp-Mannose Hydrolase (Yffh)
In Complex With Gdp-Mannose And Mg++
pdb|3O61|C Chain C, Structure Of The E100a E.Coli Gdp-Mannose Hydrolase (Yffh)
In Complex With Gdp-Mannose And Mg++
pdb|3O61|D Chain D, Structure Of The E100a E.Coli Gdp-Mannose Hydrolase (Yffh)
In Complex With Gdp-Mannose And Mg++
pdb|3O69|A Chain A, Structure Of The E100a E.Coli Gdp-Mannose Hydrolase (Yffh)
In Complex With Mg++
pdb|3O69|B Chain B, Structure Of The E100a E.Coli Gdp-Mannose Hydrolase (Yffh)
In Complex With Mg++
Length = 191
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 57/108 (52%), Gaps = 3/108 (2%)
Query: 106 ELGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLF 165
E G +E CAG++D ++ I R+ +EE GY+V ++ K+ G + F
Sbjct: 76 ESGQLIESCAGLLDNDEPEVCI-RKAAIEETGYEVG--EVRKLFELYMSPGGVTELIHFF 132
Query: 166 FVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQDEVRSPSGFLF 213
E +D+ + N+GGGV++E IEV+E+ +A E + E+R L
Sbjct: 133 IAEYSDNQRANAGGGVEDEDIEVLELPFSQALEMIKTGEIRDGKTVLL 180
>pdb|1G0S|A Chain A, The Crystal Structure Of The E.Coli Adp-Ribose
Pyrophosphatase
pdb|1G0S|B Chain B, The Crystal Structure Of The E.Coli Adp-Ribose
Pyrophosphatase
pdb|1G9Q|A Chain A, Complex Structure Of The Adpr-Ase And Its Substrate Adp-
Ribose
pdb|1G9Q|B Chain B, Complex Structure Of The Adpr-Ase And Its Substrate Adp-
Ribose
pdb|1GA7|A Chain A, Crystal Structure Of The Adp-Ribose Pyrophosphatase In
Complex With Gd+3
pdb|1GA7|B Chain B, Crystal Structure Of The Adp-Ribose Pyrophosphatase In
Complex With Gd+3
pdb|1KHZ|A Chain A, Structure Of The Adpr-Ase In Complex With Ampcpr And Mg
pdb|1KHZ|B Chain B, Structure Of The Adpr-Ase In Complex With Ampcpr And Mg
Length = 209
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 66/129 (51%), Gaps = 8/129 (6%)
Query: 91 EEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQT 150
E+ R + D ++ P LE AG++++ +S+ ++AR E +EE G + V++ + + +
Sbjct: 76 EQIRIAAYDTSETPW----LLEMVAGMIEEGESVEDVARREAIEEAG--LIVKRTKPVLS 129
Query: 151 FRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDE-ELIEVVEMGLEEAREYLAQDEVRSPS 209
F + G +R ++ EV G DE E I V + E+A +++ + ++ + +
Sbjct: 130 FLASPGGTSERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQWVEEGKIDNAA 189
Query: 210 GFLFAMHWF 218
+ A+ W
Sbjct: 190 SVI-ALQWL 197
>pdb|1VIQ|A Chain A, Crystal Structure Of Putative Adp Ribose Pyrophosphatase
pdb|1VIQ|B Chain B, Crystal Structure Of Putative Adp Ribose Pyrophosphatase
pdb|1VIQ|C Chain C, Crystal Structure Of Putative Adp Ribose Pyrophosphatase
Length = 220
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 66/129 (51%), Gaps = 8/129 (6%)
Query: 91 EEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQT 150
E+ R + D ++ P LE AG++++ +S+ ++AR E +EE G + V++ + + +
Sbjct: 77 EQIRIAAYDTSETPW----LLEMVAGMIEEGESVEDVARREAIEEAG--LIVKRTKPVLS 130
Query: 151 FRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDE-ELIEVVEMGLEEAREYLAQDEVRSPS 209
F + G +R ++ EV G DE E I V + E+A +++ + ++ + +
Sbjct: 131 FLASPGGTSERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQWVEEGKIDNAA 190
Query: 210 GFLFAMHWF 218
+ A+ W
Sbjct: 191 SVI-ALQWL 198
>pdb|1V8I|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase
pdb|1V8L|A Chain A, Structure Analysis Of The Adp-Ribose Pyrophosphatase
Complexed With Adp-Ribose
pdb|1V8M|A Chain A, Crystal Structure Analysis Of Adp-Ribose Pyrophosphatase
Complexed With Adp-Ribose And Gd
pdb|1V8N|A Chain A, Crystal Structure Analysis Of The Adp-ribose
Pyrophosphatase Complexed With Zn
pdb|1V8S|A Chain A, Crystal Structure Analusis Of The Adp-Ribose
Pyrophosphatase Complexed With Amp And Mg
pdb|1V8T|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Complexed With Ribose-5'-Phosphate And
Zn
pdb|1V8R|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Complexed With Adp-Ribose And Zn
Length = 170
Score = 30.4 bits (67), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 9/122 (7%)
Query: 104 PAELGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQT 163
PA LE AG+++ + E AR E+ EE G L + ++ G ++
Sbjct: 55 PAVGLAPLEIPAGLIEPGEDPLEAARRELAEETGLS---GDLTYLFSYFVSPGFTDEKTH 111
Query: 164 LFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQDEVR-SPSGFLFAM--HWFLA 220
+F E +++ + ++E IEVV M EEA E + EV S +G + + H FL
Sbjct: 112 VFLAENLKEVEAHPD---EDEAIEVVWMRPEEALERHQRGEVEFSATGLVGVLYYHAFLR 168
Query: 221 AK 222
+
Sbjct: 169 GR 170
>pdb|1V8V|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Of E86q Mutant, Complexed With
Adp-Ribose And Mg
pdb|1V8Y|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Of E86q Mutant, Complexed With
Adp-Ribose And Zn
Length = 170
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 9/122 (7%)
Query: 104 PAELGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQT 163
PA LE AG+++ + E AR E+ E+ G L + ++ G ++
Sbjct: 55 PAVGLAPLEIPAGLIEPGEDPLEAARRELAEQTGLS---GDLTYLFSYFVSPGFTDEKTH 111
Query: 164 LFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQDEVR-SPSGFLFAM--HWFLA 220
+F E +++ + ++E IEVV M EEA E + EV S +G + + H FL
Sbjct: 112 VFLAENLKEVEAHPD---EDEAIEVVWMRPEEALERHQRGEVEFSATGLVGVLYYHAFLR 168
Query: 221 AK 222
+
Sbjct: 169 GR 170
>pdb|1V8U|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Of E82q Mutant With So4 And Mg
pdb|1V8W|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Of E82q Mutant, Complexed With So4 And
Zn
Length = 170
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 9/122 (7%)
Query: 104 PAELGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQT 163
PA LE AG+++ + E AR ++ EE G L + ++ G ++
Sbjct: 55 PAVGLAPLEIPAGLIEPGEDPLEAARRQLAEETGLS---GDLTYLFSYFVSPGFTDEKTH 111
Query: 164 LFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQDEVR-SPSGFLFAM--HWFLA 220
+F E +++ + ++E IEVV M EEA E + EV S +G + + H FL
Sbjct: 112 VFLAENLKEVEAHPD---EDEAIEVVWMRPEEALERHQRGEVEFSATGLVGVLYYHAFLR 168
Query: 221 AK 222
+
Sbjct: 169 GR 170
>pdb|3UNB|F Chain F, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|T Chain T, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|HH Chain h, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|VV Chain v, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|F Chain F, Mouse Constitutive 20s Proteasome
pdb|3UNE|T Chain T, Mouse Constitutive 20s Proteasome
pdb|3UNE|HH Chain h, Mouse Constitutive 20s Proteasome
pdb|3UNE|VV Chain v, Mouse Constitutive 20s Proteasome
pdb|3UNF|F Chain F, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|T Chain T, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|F Chain F, Mouse 20s Immunoproteasome
pdb|3UNH|T Chain T, Mouse 20s Immunoproteasome
Length = 255
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Query: 115 AGIVDKNKSLAEIAREEV---LEECGYDVPVEKL 145
AG++ +SLA+IAREE GY++P++ L
Sbjct: 79 AGLLADARSLADIAREEASNFRSNFGYNIPLKHL 112
>pdb|1IRU|G Chain G, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|U Chain U, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 254
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Query: 115 AGIVDKNKSLAEIAREEV---LEECGYDVPVEKL 145
AG++ +SLA+IAREE GY++P++ L
Sbjct: 78 AGLLADARSLADIAREEASNFRSNFGYNIPLKHL 111
>pdb|3SDS|A Chain A, Crystal Structure Of A Mitochondrial Ornithine
Carbamoyltransferase From Coccidioides Immitis
pdb|3SDS|B Chain B, Crystal Structure Of A Mitochondrial Ornithine
Carbamoyltransferase From Coccidioides Immitis
pdb|3SDS|C Chain C, Crystal Structure Of A Mitochondrial Ornithine
Carbamoyltransferase From Coccidioides Immitis
Length = 353
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
Query: 103 YPAELGVTLEFCAGIVDKNKSLAEIA--------REEVLEECGYDVPVEKLEKIQTFRSG 154
+P+ LG+ A + D N L ++A V GY++P +E IQ R G
Sbjct: 180 HPSSLGLEGLKIAWVGDANNVLFDLAIAATKMGVNVAVATPRGYEIPSHIVELIQKAREG 239
Query: 155 VGSAGD 160
V S G+
Sbjct: 240 VQSPGN 245
>pdb|3FKJ|A Chain A, Crystal Structure Of A Putative Phosphosugar Isomerase
(Stm_0572) From Salmonella Typhimurium Lt2 At 2.12 A
Resolution
pdb|3FKJ|B Chain B, Crystal Structure Of A Putative Phosphosugar Isomerase
(Stm_0572) From Salmonella Typhimurium Lt2 At 2.12 A
Resolution
Length = 347
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 27/54 (50%)
Query: 24 KFVQEALIKENQYCHPQFLITQHKDYYIVMNKITEAQIIETRSSQFIQPYSVKF 77
+++ A I +Y H F IT+ +I++ + ++ R+ +FI+ Y K
Sbjct: 238 QWINSASIHSGEYFHGPFEITEPGTPFILLQSSGRTRPLDDRAIRFIERYQGKL 291
>pdb|2W4E|A Chain A, Structure Of An N-Terminally Truncated Nudix Hydrolase
Dr2204 From Deinococcus Radiodurans
pdb|2W4E|B Chain B, Structure Of An N-Terminally Truncated Nudix Hydrolase
Dr2204 From Deinococcus Radiodurans
Length = 145
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 102 KYPAELGVTLEFCAGIVDKNKSLAEIAREEVLEECG 137
+YP +T E AG V+K + L A E+LEE G
Sbjct: 26 RYPLRATIT-EIVAGGVEKGEDLGAAAARELLEEVG 60
>pdb|2DSB|A Chain A, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5
pdb|2DSB|B Chain B, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5
pdb|2DSB|C Chain C, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5
pdb|2DSB|D Chain D, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5
Length = 227
Score = 27.3 bits (59), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 15/96 (15%)
Query: 104 PAELGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQT 163
P G +EF AG++D ++ A E+ EE GY + + G+ + T
Sbjct: 85 PPMGGYCIEFPAGLIDDGETPEAAALRELEEETGYKGDIAECSPAVCMDPGLSNC----T 140
Query: 164 LFFVEVT---DDM-----KVNSGGGVDEELIEVVEM 191
+ V VT DD K G G E +EV+ +
Sbjct: 141 IHIVTVTINGDDAENARPKPKPGDG---EFVEVISL 173
>pdb|3BM4|A Chain A, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Ampcpr
pdb|3BM4|B Chain B, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Ampcpr
Length = 210
Score = 27.3 bits (59), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 15/96 (15%)
Query: 104 PAELGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQT 163
P G +EF AG++D ++ A E+ EE GY + + G+ + T
Sbjct: 85 PPMGGYCIEFPAGLIDDGETPEAAALRELEEETGYKGDIAECSPAVCMDPGLSNC----T 140
Query: 164 LFFVEVT---DDM-----KVNSGGGVDEELIEVVEM 191
+ V VT DD K G G E +EV+ +
Sbjct: 141 IHIVTVTINGDDAENARPKPKPGDG---EFVEVISL 173
>pdb|2DSC|A Chain A, Crystal Structure Of Human Adp-ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Adp-ribose
pdb|2DSC|B Chain B, Crystal Structure Of Human Adp-ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Adp-ribose
pdb|2DSD|A Chain A, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Amp
pdb|2DSD|B Chain B, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Amp
Length = 212
Score = 27.3 bits (59), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 15/96 (15%)
Query: 104 PAELGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQT 163
P G +EF AG++D ++ A E+ EE GY + + G+ + T
Sbjct: 87 PPMGGYCIEFPAGLIDDGETPEAAALRELEEETGYKGDIAECSPAVCMDPGLSNC----T 142
Query: 164 LFFVEVT---DDM-----KVNSGGGVDEELIEVVEM 191
+ V VT DD K G G E +EV+ +
Sbjct: 143 IHIVTVTINGDDAENARPKPKPGDG---EFVEVISL 175
>pdb|3AC9|A Chain A, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dgdp
And Manganese
pdb|3AC9|B Chain B, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dgdp
And Manganese
pdb|3L85|A Chain A, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dgmp
pdb|3L85|B Chain B, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dgmp
Length = 195
Score = 26.9 bits (58), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 15/96 (15%)
Query: 104 PAELGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQT 163
P G +EF AG++D ++ A E+ EE GY + + G+ + T
Sbjct: 72 PPMGGYCIEFPAGLIDDGETPEAAALRELEEETGYKGDIAECSPAVCMDPGLSNC----T 127
Query: 164 LFFVEVT---DDM-----KVNSGGGVDEELIEVVEM 191
+ V VT DD K G G E +EV+ +
Sbjct: 128 IHIVTVTINGDDAENARPKPKPGDG---EFVEVISL 160
>pdb|3ACA|A Chain A, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dadp
And Manganese
pdb|3ACA|B Chain B, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dadp
And Manganese
Length = 196
Score = 26.9 bits (58), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 15/96 (15%)
Query: 104 PAELGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQT 163
P G +EF AG++D ++ A E+ EE GY + + G+ + T
Sbjct: 73 PPMGGYCIEFPAGLIDDGETPEAAALRELEEETGYKGDIAECSPAVCMDPGLSNC----T 128
Query: 164 LFFVEVT---DDM-----KVNSGGGVDEELIEVVEM 191
+ V VT DD K G G E +EV+ +
Sbjct: 129 IHIVTVTINGDDAENARPKPKPGDG---EFVEVISL 161
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,275,546
Number of Sequences: 62578
Number of extensions: 245178
Number of successful extensions: 749
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 732
Number of HSP's gapped (non-prelim): 35
length of query: 230
length of database: 14,973,337
effective HSP length: 96
effective length of query: 134
effective length of database: 8,965,849
effective search space: 1201423766
effective search space used: 1201423766
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)