Query psy11834
Match_columns 230
No_of_seqs 145 out of 1494
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 20:08:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11834.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11834hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15009 GDP-mannose pyrophosp 100.0 3.2E-32 7E-37 230.7 24.9 178 6-222 6-188 (191)
2 PRK10729 nudF ADP-ribose pyrop 100.0 1.9E-30 4E-35 221.6 24.6 181 4-224 8-195 (202)
3 TIGR00052 nudix-type nucleosid 100.0 1.1E-29 2.4E-34 214.0 23.3 178 3-219 2-184 (185)
4 PRK11762 nudE adenosine nucleo 100.0 7.5E-29 1.6E-33 208.3 24.6 168 3-218 7-177 (185)
5 KOG4432|consensus 100.0 3.9E-29 8.4E-34 220.4 11.5 205 2-225 190-402 (405)
6 cd03424 ADPRase_NUDT5 ADP-ribo 99.9 1.8E-22 4E-27 160.0 17.3 136 45-221 1-136 (137)
7 KOG4432|consensus 99.9 1.2E-23 2.6E-28 185.8 9.5 188 15-221 1-192 (405)
8 PLN03143 nudix hydrolase; Prov 99.9 2.2E-21 4.9E-26 173.6 22.4 162 15-223 102-283 (291)
9 KOG3041|consensus 99.9 1.1E-20 2.5E-25 158.4 17.0 155 13-204 38-199 (225)
10 cd04700 DR1025_like DR1025 fro 99.8 1.9E-19 4.2E-24 144.9 12.5 120 46-207 13-133 (142)
11 cd03672 Dcp2p mRNA decapping e 99.8 4.6E-18 1E-22 137.9 13.7 131 47-221 2-140 (145)
12 cd04683 Nudix_Hydrolase_24 Mem 99.8 6.7E-18 1.4E-22 130.7 13.0 114 48-201 2-116 (120)
13 PF00293 NUDIX: NUDIX domain; 99.8 9.5E-18 2.1E-22 130.4 12.0 123 45-206 1-126 (134)
14 cd04697 Nudix_Hydrolase_38 Mem 99.8 1.1E-17 2.3E-22 131.7 12.3 117 48-206 2-119 (126)
15 cd03676 Nudix_hydrolase_3 Memb 99.8 2.4E-17 5.3E-22 137.5 14.6 110 108-221 63-179 (180)
16 PRK09438 nudB dihydroneopterin 99.8 1.1E-17 2.5E-22 134.7 12.2 115 45-203 6-133 (148)
17 cd04679 Nudix_Hydrolase_20 Mem 99.7 3.3E-17 7.2E-22 128.0 13.2 113 47-201 3-117 (125)
18 cd03675 Nudix_Hydrolase_2 Cont 99.7 1.3E-16 2.8E-21 125.9 16.3 91 108-201 23-113 (134)
19 cd04680 Nudix_Hydrolase_21 Mem 99.7 2.3E-17 5E-22 127.1 11.4 108 48-201 2-110 (120)
20 cd04691 Nudix_Hydrolase_32 Mem 99.7 5.2E-17 1.1E-21 126.4 12.8 88 107-203 25-112 (117)
21 TIGR02705 nudix_YtkD nucleosid 99.7 1.5E-16 3.3E-21 130.9 16.1 113 41-204 19-132 (156)
22 cd04693 Nudix_Hydrolase_34 Mem 99.7 4.3E-17 9.3E-22 127.8 11.2 119 48-207 2-121 (127)
23 cd03426 CoAse Coenzyme A pyrop 99.7 4.4E-17 9.6E-22 133.3 11.5 115 46-199 2-118 (157)
24 cd04692 Nudix_Hydrolase_33 Mem 99.7 9.3E-17 2E-21 129.1 12.9 125 46-206 2-134 (144)
25 cd04673 Nudix_Hydrolase_15 Mem 99.7 1E-16 2.2E-21 123.7 12.6 108 48-200 2-115 (122)
26 cd04687 Nudix_Hydrolase_28 Mem 99.7 2.4E-16 5.2E-21 123.7 14.8 93 108-200 24-122 (128)
27 cd03671 Ap4A_hydrolase_plant_l 99.7 2.3E-16 5.1E-21 127.3 14.5 114 46-201 3-133 (147)
28 cd03673 Ap6A_hydrolase Diadeno 99.7 1.3E-16 2.7E-21 124.4 12.4 89 109-202 27-119 (131)
29 PRK15393 NUDIX hydrolase YfcD; 99.7 2.3E-16 5E-21 132.2 14.5 116 45-201 36-151 (180)
30 cd04684 Nudix_Hydrolase_25 Con 99.7 1.9E-16 4.1E-21 123.0 12.7 114 48-203 2-121 (128)
31 cd04671 Nudix_Hydrolase_13 Mem 99.7 2.5E-16 5.5E-21 124.0 13.1 112 49-203 3-114 (123)
32 cd03429 NADH_pyrophosphatase N 99.7 2E-16 4.3E-21 125.6 12.5 111 48-205 2-112 (131)
33 PRK00714 RNA pyrophosphohydrol 99.7 4.6E-16 9.9E-21 127.5 14.4 115 46-201 8-137 (156)
34 cd04669 Nudix_Hydrolase_11 Mem 99.7 5.3E-16 1.1E-20 121.3 12.8 86 108-199 24-114 (121)
35 cd04666 Nudix_Hydrolase_9 Memb 99.7 1E-15 2.2E-20 120.6 13.5 89 109-203 26-119 (122)
36 cd04664 Nudix_Hydrolase_7 Memb 99.7 5.5E-16 1.2E-20 121.7 11.9 118 46-206 1-125 (129)
37 cd03674 Nudix_Hydrolase_1 Memb 99.7 6.3E-16 1.4E-20 123.5 12.2 111 45-199 1-123 (138)
38 cd04670 Nudix_Hydrolase_12 Mem 99.7 9.1E-16 2E-20 120.1 12.7 111 46-198 2-112 (127)
39 cd04681 Nudix_Hydrolase_22 Mem 99.7 6.3E-16 1.4E-20 121.2 11.8 107 48-197 3-113 (130)
40 cd04682 Nudix_Hydrolase_23 Mem 99.7 1.1E-15 2.3E-20 119.3 12.3 87 108-199 28-114 (122)
41 cd04696 Nudix_Hydrolase_37 Mem 99.7 1.5E-15 3.2E-20 118.7 13.1 86 109-199 26-114 (125)
42 PRK03759 isopentenyl-diphospha 99.7 2.2E-15 4.8E-20 126.5 14.1 120 45-206 33-159 (184)
43 cd03430 GDPMH GDP-mannose glyc 99.7 2.3E-15 5E-20 121.6 13.5 111 48-199 14-132 (144)
44 PRK00241 nudC NADH pyrophospha 99.6 1.4E-15 3E-20 134.4 12.1 118 37-201 123-240 (256)
45 cd03428 Ap4A_hydrolase_human_l 99.6 2E-15 4.3E-20 118.2 11.2 91 110-206 28-122 (130)
46 PRK15434 GDP-mannose mannosyl 99.6 3.4E-15 7.4E-20 123.2 13.0 112 48-200 19-138 (159)
47 cd04689 Nudix_Hydrolase_30 Mem 99.6 5.2E-15 1.1E-19 115.5 13.4 86 109-197 23-112 (125)
48 cd03427 MTH1 MutT homolog-1 (M 99.6 2.2E-15 4.8E-20 119.1 11.3 86 108-200 25-112 (137)
49 cd02885 IPP_Isomerase Isopente 99.6 3.7E-15 8.1E-20 122.8 13.1 121 45-206 29-155 (165)
50 cd04699 Nudix_Hydrolase_39 Mem 99.6 2.7E-15 5.8E-20 116.6 11.4 91 108-205 28-120 (129)
51 cd04677 Nudix_Hydrolase_18 Mem 99.6 3.9E-15 8.5E-20 116.6 12.2 112 46-202 7-125 (132)
52 cd04686 Nudix_Hydrolase_27 Mem 99.6 4.2E-15 9.1E-20 117.9 12.2 109 47-199 1-119 (131)
53 cd04678 Nudix_Hydrolase_19 Mem 99.6 4.7E-15 1E-19 116.2 12.3 113 47-199 3-117 (129)
54 PRK10707 putative NUDIX hydrol 99.6 3.8E-15 8.2E-20 126.2 12.6 88 109-201 60-148 (190)
55 PRK15472 nucleoside triphospha 99.6 3.3E-15 7.1E-20 119.4 11.4 90 108-199 30-125 (141)
56 PLN02325 nudix hydrolase 99.6 6.5E-15 1.4E-19 119.1 13.1 89 108-199 33-125 (144)
57 cd04690 Nudix_Hydrolase_31 Mem 99.6 7.5E-15 1.6E-19 113.1 12.2 84 109-198 23-109 (118)
58 cd04688 Nudix_Hydrolase_29 Mem 99.6 6.7E-15 1.5E-19 115.0 12.0 89 109-199 23-118 (126)
59 cd04511 Nudix_Hydrolase_4 Memb 99.6 6.9E-15 1.5E-19 116.1 12.0 81 108-197 37-117 (130)
60 cd04667 Nudix_Hydrolase_10 Mem 99.6 1.5E-14 3.2E-19 111.2 12.7 84 109-202 21-104 (112)
61 cd04695 Nudix_Hydrolase_36 Mem 99.6 1.1E-14 2.4E-19 115.1 12.0 88 109-202 27-117 (131)
62 cd04672 Nudix_Hydrolase_14 Mem 99.6 1.4E-14 2.9E-19 113.1 12.2 88 109-203 24-116 (123)
63 cd04665 Nudix_Hydrolase_8 Memb 99.6 4.2E-14 9.1E-19 111.2 12.3 82 109-196 21-102 (118)
64 TIGR02150 IPP_isom_1 isopenten 99.6 4.5E-14 9.7E-19 115.8 12.3 118 45-204 26-147 (158)
65 PRK10546 pyrimidine (deoxy)nuc 99.6 3.6E-14 7.8E-19 111.9 11.3 86 107-200 28-113 (135)
66 cd04685 Nudix_Hydrolase_26 Mem 99.6 5.8E-14 1.3E-18 112.3 12.6 118 47-199 1-123 (133)
67 cd04676 Nudix_Hydrolase_17 Mem 99.5 4.7E-14 1E-18 109.0 10.8 86 109-200 25-118 (129)
68 cd04694 Nudix_Hydrolase_35 Mem 99.5 1.5E-13 3.2E-18 111.4 13.5 120 48-202 3-134 (143)
69 cd02883 Nudix_Hydrolase Nudix 99.5 2.2E-13 4.7E-18 103.1 12.3 87 108-199 24-112 (123)
70 cd04661 MRP_L46 Mitochondrial 99.5 1.1E-13 2.3E-18 110.1 11.0 88 109-201 26-122 (132)
71 cd03425 MutT_pyrophosphohydrol 99.5 2.5E-13 5.4E-18 103.9 12.2 85 107-199 26-110 (124)
72 PRK10776 nucleoside triphospha 99.5 4.6E-13 1E-17 103.8 12.1 85 107-199 29-113 (129)
73 COG1051 ADP-ribose pyrophospha 99.5 1.7E-13 3.7E-18 111.3 9.6 89 108-201 34-124 (145)
74 cd04662 Nudix_Hydrolase_5 Memb 99.5 7.1E-13 1.5E-17 105.6 12.6 60 108-171 32-91 (126)
75 TIGR00586 mutt mutator mutT pr 99.5 5.9E-13 1.3E-17 103.5 12.0 85 107-199 29-113 (128)
76 PRK05379 bifunctional nicotina 99.4 2.7E-12 5.8E-17 117.7 14.5 90 108-199 227-322 (340)
77 PLN02791 Nudix hydrolase homol 99.4 2.1E-12 4.5E-17 128.5 12.4 135 32-202 20-161 (770)
78 KOG3084|consensus 99.4 2.3E-13 5E-18 121.7 3.8 130 44-217 185-326 (345)
79 COG2816 NPY1 NTP pyrophosphohy 99.3 3E-12 6.4E-17 113.7 8.4 86 109-202 168-253 (279)
80 cd04663 Nudix_Hydrolase_6 Memb 99.3 1.6E-11 3.5E-16 97.8 11.6 89 110-199 25-116 (126)
81 cd04674 Nudix_Hydrolase_16 Mem 99.3 3.9E-11 8.4E-16 94.5 12.2 43 108-150 28-70 (118)
82 PRK08999 hypothetical protein; 99.3 2.5E-11 5.3E-16 109.2 11.6 85 107-199 30-114 (312)
83 PLN02709 nudix hydrolase 99.3 2.9E-11 6.4E-16 104.7 11.5 89 108-199 66-155 (222)
84 PLN02552 isopentenyl-diphospha 99.3 1.6E-10 3.4E-15 101.8 15.1 121 44-202 54-206 (247)
85 COG0494 MutT NTP pyrophosphohy 99.2 4.5E-10 9.6E-15 86.3 11.9 96 109-204 36-139 (161)
86 KOG2839|consensus 99.1 6.4E-10 1.4E-14 89.7 10.3 89 111-203 38-129 (145)
87 cd03670 ADPRase_NUDT9 ADP-ribo 99.0 5E-09 1.1E-13 88.7 10.3 32 109-140 60-91 (186)
88 KOG3069|consensus 98.8 2.5E-08 5.5E-13 86.4 8.3 93 108-202 73-166 (246)
89 PLN02839 nudix hydrolase 98.5 4.3E-06 9.4E-11 77.3 15.1 115 101-221 230-349 (372)
90 COG1443 Idi Isopentenyldiphosp 98.5 4.3E-07 9.3E-12 75.7 6.8 145 32-215 19-169 (185)
91 cd03431 DNA_Glycosylase_C DNA 98.3 8.5E-06 1.8E-10 61.8 10.6 79 107-199 27-105 (118)
92 KOG0648|consensus 98.2 5E-07 1.1E-11 81.0 1.6 118 46-201 115-233 (295)
93 COG4119 Predicted NTP pyrophos 98.1 3.1E-05 6.7E-10 61.7 9.6 95 107-205 34-141 (161)
94 PF14815 NUDIX_4: NUDIX domain 97.0 0.0012 2.7E-08 50.5 4.6 82 107-199 22-103 (114)
95 KOG0142|consensus 96.6 0.0081 1.8E-07 51.4 7.1 81 121-206 102-190 (225)
96 KOG4195|consensus 96.1 0.0053 1.2E-07 53.3 3.3 29 109-137 150-178 (275)
97 KOG2937|consensus 95.9 0.0015 3.3E-08 59.5 -1.0 108 45-196 81-189 (348)
98 COG4112 Predicted phosphoester 92.8 0.85 1.8E-05 38.1 8.4 82 115-201 97-189 (203)
99 PF13869 NUDIX_2: Nucleotide h 90.0 1.7 3.7E-05 37.0 7.6 61 110-170 69-146 (188)
100 KOG1689|consensus 82.7 3.8 8.2E-05 34.6 5.8 30 108-137 93-122 (221)
101 KOG4313|consensus 80.4 6.8 0.00015 35.0 6.8 92 112-206 168-265 (306)
102 PRK10880 adenine DNA glycosyla 70.7 11 0.00024 35.0 6.0 27 107-140 255-281 (350)
103 PF03487 IL13: Interleukin-13; 57.6 9 0.0002 24.5 1.9 26 111-136 11-36 (43)
104 KOG4548|consensus 51.8 86 0.0019 28.1 7.7 87 109-202 152-250 (263)
105 PRK00446 cyaY frataxin-like pr 34.9 1.6E+02 0.0034 22.6 6.1 66 46-140 34-102 (105)
106 PF14443 DBC1: DBC1 31.3 2.5E+02 0.0053 22.5 6.7 19 122-140 40-58 (126)
107 COG4057 McrG Methyl coenzyme M 29.8 10 0.00022 32.8 -1.5 81 124-209 64-149 (257)
108 PF01491 Frataxin_Cyay: Fratax 28.0 1.5E+02 0.0033 22.6 5.0 69 44-140 35-106 (109)
No 1
>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional
Probab=100.00 E-value=3.2e-32 Score=230.66 Aligned_cols=178 Identities=21% Similarity=0.409 Sum_probs=151.4
Q ss_pred EeEEEEeeecCeeeEEEEEEe---ecCeE--eecccccceeeEeecCeEEEEEEEcCCCEEEEEEecCCcCCccccceec
Q psy11834 6 EAQIIETQSSQFIQPYSVKFV---QEALI--KENQYCHPQFLITQHKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQV 80 (230)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~---~~g~~--~~~~~~~~~~~~~~~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~ 80 (230)
++...+++.++|+++++.+++ +||.. ..| +++.++++|+|++++.++++++|+| ||
T Consensus 6 ~~~~~~~~~~~~~~v~~~~~~~~~pdG~~~~~~r------~vv~~~~~v~Vl~~~~~~~~vvLvr-------------Qy 66 (191)
T PRK15009 6 TLIKDKILSDNYFTLHNITYDLTRKDGEVIRHKR------EVYDRGNGATILLYNAKKKTVVLIR-------------QF 66 (191)
T ss_pred EEEEEEEEeCCeEEEEEEEEEEECCCCCccceEE------EEEEECCEEEEEEEECCCCEEEEEE-------------cc
Confidence 355667789999999997754 68874 345 8999999999999987678999999 99
Q ss_pred ccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCe
Q psy11834 81 LLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGD 160 (230)
Q Consensus 81 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~ 160 (230)
|++++.... ..+++||+|||.+|+| ++++||+|||+||||+.+ ..+.+++.+++++|.+++
T Consensus 67 R~~v~~~~~----------------~~~~~lElPAG~vd~~-~p~~aA~REL~EETGy~a--~~~~~l~~~~~spG~s~e 127 (191)
T PRK15009 67 RVATWVNGN----------------ESGQLIETCAGLLDND-EPEVCIRKEAIEETGYEV--GEVRKLFELYMSPGGVTE 127 (191)
T ss_pred cccccccCC----------------CCceEEEEeccccCCC-CHHHHHHHHHHHhhCCcc--ceEEEeeEEEcCCcccCc
Confidence 999864321 1579999999999976 799999999999999999 999999999999999999
Q ss_pred EEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHHHHhhcCCCCChHHHHHHHHHHHHhh
Q psy11834 161 RQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQDEVRSPSGFLFAMHWFLAAK 222 (230)
Q Consensus 161 ~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~~~~~~~~~~~~~~~~a~~~~~~~~ 222 (230)
.+|+|+|+.......+.+..+++|.++++|+|++++.+++.+|++.+ +.++.|++|++.++
T Consensus 128 ~~~lf~a~~~~~~~~~~~~~de~E~iev~~~~~~e~~~~i~~G~i~d-a~ti~al~~~~~~~ 188 (191)
T PRK15009 128 LIHFFIAEYSDSQRANAGGGVEDEDIEVLELPFSQALEMIKTGEIRD-GKTVLLLNYLQTSH 188 (191)
T ss_pred EEEEEEEEECchhcccCCCCCCCceEEEEEEcHHHHHHHHHcCCCCc-HHHHHHHHHHHHhc
Confidence 99999999753333344445788999999999999999999999997 78899999988763
No 2
>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional
Probab=99.98 E-value=1.9e-30 Score=221.64 Aligned_cols=181 Identities=17% Similarity=0.272 Sum_probs=147.4
Q ss_pred ceEeEEEEeeecCeeeEEEEEEe---ecCe---EeecccccceeeEeecCeEEEEEEEcCCCEEEEEEecCCcCCccccc
Q psy11834 4 ITEAQIIETQSSQFIQPYSVKFV---QEAL---IKENQYCHPQFLITQHKDYYIVMNKITEAQIIETRSSQFIQPYSVKF 77 (230)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~---~~g~---~~~~~~~~~~~~~~~~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~ 77 (230)
++.++...++++ |+++.+.+++ ++|. ...| +++.++++|+|++++..+++++|+|
T Consensus 8 ~~~~~~~~v~~~-~~~v~~~~~~~~~~~G~~~~~~~~------~vv~~~~~V~il~~~~~~~~vlLvr------------ 68 (202)
T PRK10729 8 VEIIARETLYRG-FFSLDLYRFRHRLFNGEMSGEVRR------EIFERGHAAVLLPFDPVRDEVVLIE------------ 68 (202)
T ss_pred eEEEEEEEEEcC-eEEEEEEEEEEEecCCccccEEeE------EEEEcCCeEEEEEEECCCCEEEEEE------------
Confidence 444566666774 8877655443 4775 3455 8899999999999986568999999
Q ss_pred eecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCc
Q psy11834 78 VQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGS 157 (230)
Q Consensus 78 ~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~ 157 (230)
|||+++..++ ..+++||+|||.+|+||++.+||+|||.|||||.+ ..+..++.++++++.
T Consensus 69 -QyR~~~~~~~-----------------~~~~~lE~PAG~vd~gE~p~~aA~REL~EETGy~a--~~~~~l~~~~~spg~ 128 (202)
T PRK10729 69 -QIRIAAYDTS-----------------ETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIV--GRTKPVLSYLASPGG 128 (202)
T ss_pred -eeecccccCC-----------------CCCeEEEccceEcCCCCCHHHHHHHHHHHHhCcee--eEEEEEEEEEcCCCc
Confidence 9999984211 14699999999999999999999999999999999 899999999999999
Q ss_pred cCeEEEEEEEEEcCccccc-CCCCCCCceEEEEEEcHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcC
Q psy11834 158 AGDRQTLFFVEVTDDMKVN-SGGGVDEELIEVVEMGLEEAREYLAQDEVRSPSGFLFAMHWFLAAKAG 224 (230)
Q Consensus 158 s~~~~~~y~a~~~~~~~~~-~~~~~~~E~~~v~wv~~eE~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 224 (230)
+++.+|+|++..+...... .+..++.|.+++.|+|++++.+++.+|++.+ +.+++|++|++.++..
T Consensus 129 ~~e~~~~fla~~~~~~~~~~~~~~de~E~i~v~~~~~~e~~~~~~~G~i~d-~~ti~al~~~~~~~~~ 195 (202)
T PRK10729 129 TSERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQWVEEGKIDN-AASVIALQWLQLHHQA 195 (202)
T ss_pred CceEEEEEEEEEcchhcccCCCCCCCCCceEEEEEcHHHHHHHHHcCCCCc-HHHHHHHHHHHHhhHH
Confidence 9999999999964321111 1334789999999999999999999999997 7889999998877543
No 3
>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family.
Probab=99.97 E-value=1.1e-29 Score=214.04 Aligned_cols=178 Identities=23% Similarity=0.363 Sum_probs=147.5
Q ss_pred cceEeEEEEeeecCeeeEEEEE--Eee-cC--eEeecccccceeeEeecCeEEEEEEEcCCCEEEEEEecCCcCCccccc
Q psy11834 3 KITEAQIIETQSSQFIQPYSVK--FVQ-EA--LIKENQYCHPQFLITQHKDYYIVMNKITEAQIIETRSSQFIQPYSVKF 77 (230)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~--~~~-~g--~~~~~~~~~~~~~~~~~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~ 77 (230)
.++.++...++.++|+.++... ... +| ....| +++.++++|+|++++.++++++|+|
T Consensus 2 ~~~~l~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~~------~~v~~~~~v~vl~~~~~~~~vlLvr------------ 63 (185)
T TIGR00052 2 QQEIIIKDTLYSGFFSLLHNIFYHRLFKGGESIRVTR------EIYDRGNAAAVLLYDPKKDTVVLIE------------ 63 (185)
T ss_pred ceEEEEEEEEecCCcEEEEEEEEEEeeCCCCCceEEE------EEEEcCCeEEEEEEECCCCEEEEEE------------
Confidence 3455667788999999997432 333 55 34566 8999999999999986678999999
Q ss_pred eecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCc
Q psy11834 78 VQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGS 157 (230)
Q Consensus 78 ~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~ 157 (230)
|||++.+.+.. .+++||+|||++|+||++++||+|||+||||+.+ ..+..++.++.+++.
T Consensus 64 -q~R~~~~~~~~-----------------~~~~lelPaG~ve~gE~~~~aA~REl~EEtG~~~--~~~~~~~~~~~~~g~ 123 (185)
T TIGR00052 64 -QFRIAAYVNGE-----------------EPWLLELSAGMVEKGESPEDVARREAIEEAGYQV--KNLRKLLSFYSSPGG 123 (185)
T ss_pred -CceeeeeecCC-----------------cceEEEECcEecCCCCCHHHHHHHHcccccccee--cceEEEEEEEcCCCC
Confidence 99999853311 4689999999999999999999999999999999 899999999999999
Q ss_pred cCeEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHHHHhhcCCCCChHHHHHHHHHHH
Q psy11834 158 AGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQDEVRSPSGFLFAMHWFL 219 (230)
Q Consensus 158 s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~~~~~~~~~~~~~~~~a~~~~~ 219 (230)
+++.+++|++.+......+....+++|.+++.|++++++.+++.+|++.+ +.++.|++|+.
T Consensus 124 ~~~~~~~f~a~~~~~~~~~~~~~~~~E~ie~~~~~~~e~~~~~~~G~i~d-~~t~~al~~~~ 184 (185)
T TIGR00052 124 VTELIHLFIAEVDDNQAAGIGGGADEEEIEVLHLVFSQALQWIKEGKIDN-GKTVILLQWLQ 184 (185)
T ss_pred CcEEEEEEEEEEchhhcCCCCCCCCccceEEEEeCHHHHHHHHHcCCCCC-HHHHHHHHHHh
Confidence 99999999999765443333344667889999999999999999999997 68888988875
No 4
>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional
Probab=99.97 E-value=7.5e-29 Score=208.33 Aligned_cols=168 Identities=17% Similarity=0.173 Sum_probs=143.0
Q ss_pred cceEeEEEEeeecCeeeEEEEEEe-ecCeEeecccccceeeEe--ecCeEEEEEEEcCCCEEEEEEecCCcCCcccccee
Q psy11834 3 KITEAQIIETQSSQFIQPYSVKFV-QEALIKENQYCHPQFLIT--QHKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQ 79 (230)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~--~~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q 79 (230)
+++.++...+++++|+++++.+++ ++|....| +.+. .+++|.|++++ .++++||+| |
T Consensus 7 ~~~~~~~~~v~~~~~~~v~~~~~~~~~G~~~~~------~~v~~~~~~~v~v~~~~-~~~~vlLvr-------------q 66 (185)
T PRK11762 7 KPEILNRETVAKSRLFRVESVDLEFSNGVERVY------ERMRPSGRGAVMIVPIL-DDDTLLLIR-------------E 66 (185)
T ss_pred CCEEeeEEEEEeCCEEEEEEEEEEcCCCCEEEE------EEEecCCCCEEEEEEEe-CCCEEEEEE-------------e
Confidence 456677788899999999999997 68988888 6665 34578888876 478999999 9
Q ss_pred cccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccC
Q psy11834 80 VLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAG 159 (230)
Q Consensus 80 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~ 159 (230)
||++. ..+.||||||.+|+||++.+||+||++||||+.+ ..+..++.++++++..+
T Consensus 67 ~r~~~----------------------~~~~~elPaG~ve~gE~~~~aA~REl~EEtG~~~--~~l~~l~~~~~~~~~~~ 122 (185)
T PRK11762 67 YAAGT----------------------ERYELGFPKGLIDPGETPLEAANRELKEEVGFGA--RQLTFLKELSLAPSYFS 122 (185)
T ss_pred ecCCC----------------------CCcEEEccceeCCCCCCHHHHHHHHHHHHHCCCC--cceEEEEEEecCCCccC
Confidence 99887 5788999999999999999999999999999999 99999999999898889
Q ss_pred eEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHHHHhhcCCCCChHHHHHHHHHH
Q psy11834 160 DRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQDEVRSPSGFLFAMHWF 218 (230)
Q Consensus 160 ~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~~~~~~~~~~~~~~~~a~~~~ 218 (230)
..+++|++..... .....++.|.+++.|++++++.+++.+|++.+ +.++.|+.|+
T Consensus 123 ~~~~~f~a~~~~~---~~~~~~e~E~i~~~~~~~~e~~~~~~~g~i~d-~~ti~al~~~ 177 (185)
T PRK11762 123 SKMNIVLAEDLYP---ERLEGDEPEPLEVVRWPLADLDELLARPDFSE-ARSVAALFLA 177 (185)
T ss_pred cEEEEEEEEcccc---ccCCCCCCceeEEEEEcHHHHHHHHHcCCCCc-HHHHHHHHHH
Confidence 9999999984322 12234678889999999999999999999997 6778887554
No 5
>KOG4432|consensus
Probab=99.96 E-value=3.9e-29 Score=220.43 Aligned_cols=205 Identities=31% Similarity=0.536 Sum_probs=186.4
Q ss_pred CcceEeEEEEe-eecCeeeEEEEEEeecCeEeecccccceeeEeecCeEEEEEEEcCCCEEEEEEecCCcCCccccceec
Q psy11834 2 NKITEAQIIET-QSSQFIQPYSVKFVQEALIKENQYCHPQFLITQHKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQV 80 (230)
Q Consensus 2 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~ 80 (230)
..+.+.+.... .+|+|+++.++.|++||.++.| +++..|++|.|+++|..+.+++|+| ||
T Consensus 190 e~V~~~~~g~l~a~spy~~P~rl~y~qNGi~knW------Dl~k~hdSvt~iL~n~srk~LVlvq-------------qf 250 (405)
T KOG4432|consen 190 ELVLDPKKGGLIATSPYYNPKRLIYTQNGITKNW------DLAKCHDSVTCILVNMSRKELVLVQ-------------QF 250 (405)
T ss_pred HHhcccccCCcccCCCCcCceEEEEEecCccccc------chhhCCCceEEEEEeccchheehhh-------------hc
Confidence 34555555555 4599999999999999999999 9999999999999999899999999 99
Q ss_pred ccceeccCCc---c--cccCCccccccCCCCCCcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCC
Q psy11834 81 LLSVYINSIP---E--EDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGV 155 (230)
Q Consensus 81 r~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~ 155 (230)
|+++|++.+. + ++..-+|+.+..++..++|+||++|.|+..-|..+-|.||..||+||+++++++..+..+.+..
T Consensus 251 RpaVy~G~~~~~~~g~~~~vDe~~~~e~~PaigvTlELcag~Vd~p~s~~e~a~~e~veecGYdlp~~~~k~va~y~sGV 330 (405)
T KOG4432|consen 251 RPAVYVGKNRFLKEGIGKPVDEIDFSESDPAIGVTLELCAGRVDDPFSDPEKAARESVEECGYDLPEDSFKLVAKYISGV 330 (405)
T ss_pred CcceeecceeecccCCCCcccccccccCCccceeeeeeecccCCCCcccHHHHHHHHHHHhCCCCCHHHHhhhheeeccc
Confidence 9999998875 3 8888899999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCeEEEEEEEEEcCcccccCCCC--CCCceEEEEEEcHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCC
Q psy11834 156 GSAGDRQTLFFVEVTDDMKVNSGGG--VDEELIEVVEMGLEEAREYLAQDEVRSPSGFLFAMHWFLAAKAGQ 225 (230)
Q Consensus 156 ~~s~~~~~~y~a~~~~~~~~~~~~~--~~~E~~~v~wv~~eE~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 225 (230)
|.++..+++|++++.++.+..++.. +++|+|+++.++++++.+++.++.|..|.++++++.|||.|.|..
T Consensus 331 G~SG~~QTmfy~eVTdA~rsgpGgg~~ee~E~IEvv~lsle~a~~~~~q~~I~~~lt~~~gi~wfl~q~ap~ 402 (405)
T KOG4432|consen 331 GQSGDTQTMFYVEVTDARRSGPGGGEKEEDEDIEVVRLSLEDAPSLYRQHNIGPPLTTYYGIGWFLDQLAPR 402 (405)
T ss_pred CCcCCeeEEEEEEeehhhccCCCCCcccccceeeEEEechhhhhHHHhccCCCCCcceeeeHHHHHhhhccc
Confidence 9999999999999998876555544 678999999999999999999999988789999999999998864
No 6
>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem
Probab=99.90 E-value=1.8e-22 Score=159.96 Aligned_cols=136 Identities=32% Similarity=0.386 Sum_probs=111.0
Q ss_pred ecCeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCH
Q psy11834 45 QHKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSL 124 (230)
Q Consensus 45 ~~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~ 124 (230)
++++|.+++++. ++++||+| |+|++. .+..|++|||++|+||++
T Consensus 1 ~~~~v~v~~~~~-~~~iLl~~-------------~~~~~~----------------------~~~~w~~PgG~ve~gEs~ 44 (137)
T cd03424 1 HPDAVAVLPYDD-DGKVVLVR-------------QYRPPV----------------------GGWLLELPAGLIDPGEDP 44 (137)
T ss_pred CCCEEEEEEEcC-CCeEEEEE-------------eeecCC----------------------CCEEEEeCCccCCCCCCH
Confidence 478999999985 68999999 888765 467899999999999999
Q ss_pred HHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHHHHhhcCC
Q psy11834 125 AEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQDE 204 (230)
Q Consensus 125 ~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~~~~~~~ 204 (230)
.+||.||++||||+.+ ..+..++.++...+.....+++|++....... ....++.|+.++.|++++++.+++.+++
T Consensus 45 ~~aa~RE~~EE~Gl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~E~~~~~w~~~~el~~~~~~~~ 120 (137)
T cd03424 45 EEAARRELEEETGYEA--GDLEKLGSFYPSPGFSDERIHLFLAEDLSPGE--EGLLDEGEDIEVVLVPLDEALELLADGE 120 (137)
T ss_pred HHHHHHHHHHHHCCCc--cceEEEeeEecCCcccCccEEEEEEEcccccc--cCCCCCCCeeEEEEecHHHHHHHHHcCC
Confidence 9999999999999999 78888888777666666778888888654321 0234567899999999999999999999
Q ss_pred CCChHHHHHHHHHHHHh
Q psy11834 205 VRSPSGFLFAMHWFLAA 221 (230)
Q Consensus 205 ~~~~~~~~~a~~~~~~~ 221 (230)
+.. ..+++++..|++.
T Consensus 121 ~~~-~~~~~~~~~~~~~ 136 (137)
T cd03424 121 IID-DATLIALLLWLAL 136 (137)
T ss_pred Ccc-cHHHHHHHHHHHc
Confidence 865 5667777666654
No 7
>KOG4432|consensus
Probab=99.90 E-value=1.2e-23 Score=185.81 Aligned_cols=188 Identities=31% Similarity=0.515 Sum_probs=170.3
Q ss_pred cCeeeEEEEEEeecCeEeecccccceeeEeecCeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCc-c--
Q psy11834 15 SQFIQPYSVKFVQEALIKENQYCHPQFLITQHKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIP-E-- 91 (230)
Q Consensus 15 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~-~-- 91 (230)
|+|++.-++.+..||..+.- ++...-++|+|++++++..+++|+| |||+++|-+++. +
T Consensus 1 s~~~k~~~m~y~~~~~~r~~------e~~q~~~~v~ill~~r~~eq~l~vr-------------qfr~ai~~~~~s~~~~ 61 (405)
T KOG4432|consen 1 SKYQKGMEMSYTLDGNSRVS------EFNQKMSSVSILLFHRDLEQFLLVR-------------QFRPAIFTASNSPENH 61 (405)
T ss_pred CCcccCceEEEEecCchHHH------HHHhhccceEEEEEccchhhhehhh-------------hhchhheecccCCCCC
Confidence 68999999999999877766 7788899999999998889999999 999999988874 4
Q ss_pred cccCCccccccCCCCCCcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcC
Q psy11834 92 EDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTD 171 (230)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~ 171 (230)
++.-+.|||+-||.+-++|+||+||.||+..|+.+-|..|+.||+||+++++++.++.+|....+.+...+|+|+|++++
T Consensus 62 ~~~~~~~d~~~~~~e~g~tielc~g~idke~s~~eia~eev~eecgy~v~~d~l~hv~~~~~g~~~s~sa~~l~y~ei~e 141 (405)
T KOG4432|consen 62 GKEFDKIDWSSYDSETGYTIELCAGLIDKELSPREIASEEVAEECGYRVDPDDLIHVITFVVGAHQSGSAQHLYYAEIDE 141 (405)
T ss_pred CcccccccHhhCCCccceeeeeeccccccccCHHHHhHHHHHHHhCCcCChhHceEEEEEEeccccCccchheeeeecch
Confidence 89999999999999999999999999999999999999999999999999999999999999988888899999999999
Q ss_pred cccccCCCCCCCceEEEEEEcHHHHHHHhhcC-CCCChHHHHHHHHHHHHh
Q psy11834 172 DMKVNSGGGVDEELIEVVEMGLEEAREYLAQD-EVRSPSGFLFAMHWFLAA 221 (230)
Q Consensus 172 ~~~~~~~~~~~~E~~~v~wv~~eE~~~~~~~~-~~~~~~~~~~a~~~~~~~ 221 (230)
.++++++++--.+.+..+-+++++++.++.-+ +...|++.++|++|+.+-
T Consensus 142 s~kis~gggv~~~~~~~~~~a~e~ar~~i~t~a~~~g~p~~l~~~~~me~V 192 (405)
T KOG4432|consen 142 SMKISEGGGVITKVYYPVNVAREIARPAIGTHAEVKGPPGVLFAFQWMELV 192 (405)
T ss_pred hhccccCCceeeEEEEeehhhHHHHHHhhccCccccCCCeeeeHHHHHHHh
Confidence 99999888777778888889999999988754 456778899999988653
No 8
>PLN03143 nudix hydrolase; Provisional
Probab=99.89 E-value=2.2e-21 Score=173.64 Aligned_cols=162 Identities=20% Similarity=0.230 Sum_probs=125.5
Q ss_pred cCeeeEEEEEEe-ecCeEeecccccceeeEeecCeEEEEEEEcCCC--EEEEEEecCCcCCccccceecccceeccCCcc
Q psy11834 15 SQFIQPYSVKFV-QEALIKENQYCHPQFLITQHKDYYIVMNKITEA--QIIETRSSQFIQPYSVKFVQVLLSVYINSIPE 91 (230)
Q Consensus 15 ~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~v~vl~~~~~~~--~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~ 91 (230)
=.|++++...+. ++|....+ .++.++++|+|++....++ .++|+| |||+++
T Consensus 102 ~gflkv~~d~~~l~~G~~~~~------~v~~rg~aVaVL~~l~~~ge~~VlLVr-------------Q~R~pv------- 155 (291)
T PLN03143 102 IGFLKFKADIIDKETGQKVPG------IVFARGPAVAVLILLESEGETYAVLTE-------------QVRVPV------- 155 (291)
T ss_pred eeEEEEEEEEEECCCCCEeeE------EEEEcCCeEEEEEEEeCCCCEEEEEEE-------------eEecCC-------
Confidence 468888888887 47865555 7788899999987732234 499999 999988
Q ss_pred cccCCccccccCCCCCCcEEEeeeeecCC-CCCHHHHHHHHHHhhhCCccCCCceEEEE---------EEEcCCCccCeE
Q psy11834 92 EDRTGSIDVTKYPAELGVTLEFCAGIVDK-NKSLAEIAREEVLEECGYDVPVEKLEKIQ---------TFRSGVGSAGDR 161 (230)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~elPgG~VE~-GEs~~eAA~REl~EETGl~v~~~~l~~l~---------~~~~~~~~s~~~ 161 (230)
+.+.||||||++|+ +|++.+||+||++|||||.+...++..+. .+++++|.+++.
T Consensus 156 ---------------g~~~lE~PAG~lD~~~edp~~aA~REL~EETG~~~~a~~lv~L~~~~~~~~g~~v~pspG~~dE~ 220 (291)
T PLN03143 156 ---------------GKFVLELPAGMLDDDKGDFVGTAVREVEEETGIKLKLEDMVDLTAFLDPSTGCRMFPSPGGCDEE 220 (291)
T ss_pred ---------------CcEEEEecccccCCCCCCHHHHHHHHHHHHHCCccccceEEEeeeccccCcCceEEecCCccCCe
Confidence 67899999999998 58999999999999999987546777774 789999999999
Q ss_pred EEEEEEEEcCccc-c----c--CCCCCCCceEEEEEEcHHHHHHHhhcCCCCChHHHHHHHHHHHHhhc
Q psy11834 162 QTLFFVEVTDDMK-V----N--SGGGVDEELIEVVEMGLEEAREYLAQDEVRSPSGFLFAMHWFLAAKA 223 (230)
Q Consensus 162 ~~~y~a~~~~~~~-~----~--~~~~~~~E~~~v~wv~~eE~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 223 (230)
+++|++...-+.. + . .+..+++|.+++.|++++++..++++ ++++.|+.++...|.
T Consensus 221 i~Lfla~~~v~~~~l~~l~~~~~~l~degE~Iev~~vpl~eiw~~~aD------~ktl~al~l~~~~k~ 283 (291)
T PLN03143 221 ISLFLYRGHVDKETIRQLQGKETGLRDHGELIKVHVVPYRELWRMTAD------AKVLMAIALYEMAKR 283 (291)
T ss_pred EEEEEEccccchhhhcccccccCCCCCCCcEEEEEEEEHHHHHHHHHh------HHHHHHHHHHHHHHh
Confidence 9999987432110 0 1 11236789999999999999999752 467777766655444
No 9
>KOG3041|consensus
Probab=99.86 E-value=1.1e-20 Score=158.45 Aligned_cols=155 Identities=19% Similarity=0.182 Sum_probs=124.1
Q ss_pred eecCeeeEEEEEEe-ecCeEeecccccceee-EeecCeEEEEEEEcCCC--EEEEEEecCCcCCccccceecccceeccC
Q psy11834 13 QSSQFIQPYSVKFV-QEALIKENQYCHPQFL-ITQHKDYYIVMNKITEA--QIIETRSSQFIQPYSVKFVQVLLSVYINS 88 (230)
Q Consensus 13 ~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~-~~~~~~v~vl~~~~~~~--~vll~r~~~~~~~~~~~~~q~r~~~~~~~ 88 (230)
.+.+|+++.++.+. +.|+++.|...++..- ..+.|+|+|+..-..++ .++|++ |||+|.
T Consensus 38 ~~~kWi~Lkkv~~qD~~GKir~wes~~Rttr~ea~~dgVaIl~il~~dG~~~ivL~k-------------QfRpP~---- 100 (225)
T KOG3041|consen 38 SDGKWIRLKKVLYQDPTGKIRDWESVQRTTRVEARADGVAILAILESDGKPYIVLVK-------------QFRPPT---- 100 (225)
T ss_pred CCccEEEEEEEEEEcCCCceeeeehheecccccccCCeEEEEEEEecCCcEEEEEEE-------------eecCCC----
Confidence 78999999999998 5899999976664422 24679999988765444 899999 999998
Q ss_pred CcccccCCccccccCCCCCCcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEE
Q psy11834 89 IPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVE 168 (230)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~ 168 (230)
++..+|+|+|.||.||++..||.|||+|||||.-+ ....--..+.+||.++...++.++.
T Consensus 101 ------------------Gk~ciElPAGLiD~ge~~~~aAiREl~EEtGy~gk--v~~~s~~~f~DPGltn~~~~iv~v~ 160 (225)
T KOG3041|consen 101 ------------------GKICIELPAGLIDDGEDFEGAAIRELEEETGYKGK--VDMVSPTVFLDPGLTNCNLCIVVVD 160 (225)
T ss_pred ------------------CcEEEEcccccccCCCchHHHHHHHHHHHhCccce--eeeccccEEcCCCCCCCceEEEEEE
Confidence 79999999999999999999999999999999852 2222224677789999999998888
Q ss_pred EcCccccc--C-CCCCCCceEEEEEEcHHHHHHHhhcCC
Q psy11834 169 VTDDMKVN--S-GGGVDEELIEVVEMGLEEAREYLAQDE 204 (230)
Q Consensus 169 ~~~~~~~~--~-~~~~~~E~~~v~wv~~eE~~~~~~~~~ 204 (230)
++.+..-+ + +..+++|.|++.-++..++.+.+.+-+
T Consensus 161 idg~~pEnqrp~q~ledgEfIev~~i~~~~L~~~~~~l~ 199 (225)
T KOG3041|consen 161 IDGDVPENQRPVQQLEDGEFIEVFLIPLSELWRELADLD 199 (225)
T ss_pred ecCCCccccCccccCCCCceEEEEEeeHHHHHHHHHhhh
Confidence 87654312 2 234789999999999999998876543
No 10
>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities. Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us
Probab=99.82 E-value=1.9e-19 Score=144.89 Aligned_cols=120 Identities=14% Similarity=0.118 Sum_probs=90.1
Q ss_pred cCeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCHH
Q psy11834 46 HKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLA 125 (230)
Q Consensus 46 ~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~ 125 (230)
..+|++++++ .++++||++ + |.+. .+..|++|||++++|||+.
T Consensus 13 ~~av~~vv~~-~~~~vLL~~-------------r-~~~~----------------------~~~~w~lPgG~ve~gEt~~ 55 (142)
T cd04700 13 ARAAGAVILN-ERNDVLLVQ-------------E-KGGP----------------------KKGLWHIPSGAVEDGEFPQ 55 (142)
T ss_pred eeeEEEEEEe-CCCcEEEEE-------------E-cCCC----------------------CCCeEECCceecCCCCCHH
Confidence 5688888887 467899988 5 3222 3577999999999999999
Q ss_pred HHHHHHHHhhhCCccCCCceEEEEEEEc-CCCccCeEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHHHHhhcCC
Q psy11834 126 EIAREEVLEECGYDVPVEKLEKIQTFRS-GVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQDE 204 (230)
Q Consensus 126 eAA~REl~EETGl~v~~~~l~~l~~~~~-~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~~~~~~~ 204 (230)
+||+||++||||+++ ..+..++.+.. .+.......++|++...... ......+|+.++.|++++++.+++.+|+
T Consensus 56 ~aa~REl~EEtGl~~--~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~---~~~~~~~E~~~~~w~~~~el~~~~~~g~ 130 (142)
T cd04700 56 DAAVREACEETGLRV--RPVKFLGTYLGRFDDGVLVLRHVWLAEPEGQT---LAPKFTDEIAEASFFSREDVAQLYAQGQ 130 (142)
T ss_pred HHHHHHHHHhhCcee--eccEEEEEEEEEcCCCcEEEEEEEEEEecCCc---cccCCCCCEEEEEEECHHHhhhcccccc
Confidence 999999999999998 66666665432 12222344578888864221 1112346899999999999999999999
Q ss_pred CCC
Q psy11834 205 VRS 207 (230)
Q Consensus 205 ~~~ 207 (230)
+.+
T Consensus 131 i~~ 133 (142)
T cd04700 131 LRM 133 (142)
T ss_pred ccc
Confidence 986
No 11
>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex. Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).
Probab=99.78 E-value=4.6e-18 Score=137.87 Aligned_cols=131 Identities=13% Similarity=0.136 Sum_probs=88.5
Q ss_pred CeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCHHH
Q psy11834 47 KDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLAE 126 (230)
Q Consensus 47 ~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~e 126 (230)
+.+++++++.+++++||+| ++++ + .|+||||++|+|||+.+
T Consensus 2 p~~gaii~~~~~~~vLLvr-------------~~~~-------------------------~-~W~lPGG~ve~gEs~~~ 42 (145)
T cd03672 2 PVYGAIILNEDLDKVLLVK-------------GWKS-------------------------K-SWSFPKGKINKDEDDHD 42 (145)
T ss_pred CeeEEEEEeCCCCEEEEEE-------------ecCC-------------------------C-CEECCCccCCCCcCHHH
Confidence 4567777775457999999 7543 2 58999999999999999
Q ss_pred HHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCC-CCCceEEEEEEcHHHHHHHhhcC--
Q psy11834 127 IAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGG-VDEELIEVVEMGLEEAREYLAQD-- 203 (230)
Q Consensus 127 AA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~-~~~E~~~v~wv~~eE~~~~~~~~-- 203 (230)
||+||++||||+.+ ..+.... .+...+..+..+++|++...... ..... .++|+.++.|++++++..++..-
T Consensus 43 AA~REl~EETGl~v--~~~~~~~-~~~~~~~~~~~~~~f~~~~~~~~--~~~~~~~~~E~~~~~Wv~~~el~~~~~~~~~ 117 (145)
T cd03672 43 CAIREVYEETGFDI--SKYIDKD-DYIELIIRGQNVKLYIVPGVPED--TPFEPKTRKEISKIEWFDIKDLPTKKNKKIP 117 (145)
T ss_pred HHHHHHHHhhCccc--eeccccc-eeeecccCCcEEEEEEEecCCCC--cccCcCChhhhheEEEeeHHHhhhhhhhccc
Confidence 99999999999988 4433222 22223344556777777632211 11112 35789999999999999997764
Q ss_pred -----CCCChHHHHHHHHHHHHh
Q psy11834 204 -----EVRSPSGFLFAMHWFLAA 221 (230)
Q Consensus 204 -----~~~~~~~~~~a~~~~~~~ 221 (230)
.+..-..++.++.-|++.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~ 140 (145)
T cd03672 118 GLNSNKFFMVIPFIKPLKKWINR 140 (145)
T ss_pred cccccceEEEhHHHHHHHHHHHH
Confidence 332224556677444443
No 12
>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.77 E-value=6.7e-18 Score=130.71 Aligned_cols=114 Identities=17% Similarity=0.197 Sum_probs=81.2
Q ss_pred eEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCHHHH
Q psy11834 48 DYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLAEI 127 (230)
Q Consensus 48 ~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~eA 127 (230)
+|++++.+ ++++||+| +.+.+. .+..|++|||++++||++.+|
T Consensus 2 ~v~~vi~~--~~~vLL~~-------------r~~~~~----------------------~~~~w~lPgG~ve~gE~~~~a 44 (120)
T cd04683 2 AVYVLLRR--DDEVLLQR-------------RANTGY----------------------MDGQWALPAGHLEKGEDAVTA 44 (120)
T ss_pred cEEEEEEE--CCEEEEEE-------------ccCCCC----------------------CCCeEeCCccccCCCCCHHHH
Confidence 56777765 68999999 665433 356899999999999999999
Q ss_pred HHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEE-EEEEEcCcccccCCCCCCCceEEEEEEcHHHHHHHhh
Q psy11834 128 AREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTL-FFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLA 201 (230)
Q Consensus 128 A~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~-y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~~~~ 201 (230)
|.||++||||+.+.+..+..++.+....+.....+++ |.+...... ....+++|+.++.|++++++...+.
T Consensus 45 a~REl~EEtGl~v~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~---~~~~~~~e~~~~~W~~~~~l~~~~~ 116 (120)
T cd04683 45 AVREAREEIGVTLDPEDLRLAHTMHRRTEDIESRIGLFFTVRRWSGE---PRNCEPDKCAELRWFPLDALPDDTV 116 (120)
T ss_pred HHHHHHHHHCCccChhheEEEEEEEecCCCCceEEEEEEEEEeecCc---cccCCCCcEeeEEEEchHHCcchhc
Confidence 9999999999998544777777655544333344444 445432211 1122456788999999999987654
No 13
>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []. The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....
Probab=99.76 E-value=9.5e-18 Score=130.43 Aligned_cols=123 Identities=23% Similarity=0.303 Sum_probs=90.3
Q ss_pred ecCeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCH
Q psy11834 45 QHKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSL 124 (230)
Q Consensus 45 ~~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~ 124 (230)
+|.+|.+++++. +++|||+| +.+.+. ..+..|.+|||++++|||+
T Consensus 1 ~~~~v~~ii~~~-~~~vLl~~-------------r~~~~~---------------------~~~~~~~~pgG~i~~~E~~ 45 (134)
T PF00293_consen 1 WRRAVGVIIFNE-DGKVLLIK-------------RSRSPI---------------------TFPGYWELPGGGIEPGESP 45 (134)
T ss_dssp EEEEEEEEEEET-TTEEEEEE-------------ESTTSS---------------------SSTTEEESSEEEECTTSHH
T ss_pred CCCEEEEEEEeC-CcEEEEEE-------------ecCCCC---------------------CCCCeEecceeeEEcCCch
Confidence 367899999985 55999999 776542 1357899999999999999
Q ss_pred HHHHHHHHHhhhCCccCCCceEEEE--EEEcCCCcc-CeEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHHHHhh
Q psy11834 125 AEIAREEVLEECGYDVPVEKLEKIQ--TFRSGVGSA-GDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLA 201 (230)
Q Consensus 125 ~eAA~REl~EETGl~v~~~~l~~l~--~~~~~~~~s-~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~~~~ 201 (230)
.+||+||+.||||+.+ .....+. .+....+.. ....++|++.+...... ......|..++.|++++++.+++.
T Consensus 46 ~~aa~REl~EE~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~~~W~~~~el~~~~~ 121 (134)
T PF00293_consen 46 EEAARRELKEETGLDV--SPLELLGLFSYPSPSGDPEGEIVIFFIAELPSEQSE--IQPQDEEISEVKWVPPDELLELLL 121 (134)
T ss_dssp HHHHHHHHHHHHSEEE--EEEEEEEEEEEEETTTESSEEEEEEEEEEEEEEESE--CHTTTTTEEEEEEEEHHHHHHHHH
T ss_pred hhhHHhhhhhccccee--cccccceeeeecccCCCcccEEEEEEEEEEeCCccc--cCCCCccEEEEEEEEHHHhhhchh
Confidence 9999999999999998 4444433 333332222 35677777776543211 122334999999999999999999
Q ss_pred cCCCC
Q psy11834 202 QDEVR 206 (230)
Q Consensus 202 ~~~~~ 206 (230)
.+..+
T Consensus 122 ~~~~~ 126 (134)
T PF00293_consen 122 NGRIR 126 (134)
T ss_dssp TTHHH
T ss_pred Ccchh
Confidence 87553
No 14
>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.76 E-value=1.1e-17 Score=131.70 Aligned_cols=117 Identities=17% Similarity=0.189 Sum_probs=88.7
Q ss_pred eEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEe-eeeecCCCCCHHH
Q psy11834 48 DYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEF-CAGIVDKNKSLAE 126 (230)
Q Consensus 48 ~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el-PgG~VE~GEs~~e 126 (230)
+++|++++ .++++||.+ +..... ..+..|++ |||++++||++.+
T Consensus 2 ~~~v~i~~-~~~~iLl~~-------------R~~~~~---------------------~~~g~w~~~~GG~ve~gE~~~~ 46 (126)
T cd04697 2 ATYIFVFN-SEGKLCVHK-------------RTLTKD---------------------WCPGYWDIAFGGVVQAGESYLQ 46 (126)
T ss_pred eEEEEEEc-CCCeEEEEE-------------CCCCCC---------------------CCCCcccCcCCcccCCCCCHHH
Confidence 57888888 478999977 322211 02345888 6899999999999
Q ss_pred HHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHHHHhhcCCCC
Q psy11834 127 IAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQDEVR 206 (230)
Q Consensus 127 AA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~~~~~~~~~ 206 (230)
||+||++||||+.+ ..+..++.+...........++|.+..... ....++|+.++.|++++++.+++..+++.
T Consensus 47 aa~REl~EEtGl~~--~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~-----~~~~~~E~~~~~w~~~~el~~~~~~~~~~ 119 (126)
T cd04697 47 NAQRELEEELGIDG--VQLTPLGLFYYDTDGNRVWGKVFSCVYDGP-----LKLQEEEVEEITWLSINEILQFKEGENIT 119 (126)
T ss_pred HHHHHHHHHHCCCc--cccEEeeEEEecCCCceEEEEEEEEEECCC-----CCCCHhHhhheEEcCHHHHHHHhhcCccc
Confidence 99999999999998 688888877665444445567787765321 12356788899999999999999999885
No 15
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=99.75 E-value=2.4e-17 Score=137.47 Aligned_cols=110 Identities=17% Similarity=0.239 Sum_probs=82.7
Q ss_pred CcEE-EeeeeecCCCCCHHHHHHHHHHhhhCCccCCCc-eEEEEE---EE--cCCCccCeEEEEEEEEEcCcccccCCCC
Q psy11834 108 GVTL-EFCAGIVDKNKSLAEIAREEVLEECGYDVPVEK-LEKIQT---FR--SGVGSAGDRQTLFFVEVTDDMKVNSGGG 180 (230)
Q Consensus 108 ~~~~-elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~-l~~l~~---~~--~~~~~s~~~~~~y~a~~~~~~~~~~~~~ 180 (230)
+..| ++|||++++||++.+||+||++||||+.+.... +..++. ++ .+.+..++.+++|.+.+.... ....
T Consensus 63 Pg~wd~~~~G~v~~gE~~~~aA~REl~EE~Gl~~~~~~~l~~~g~~~~~~~~~~~~~~~e~~~~f~~~~~~~~---~~~~ 139 (180)
T cd03676 63 PGMLDNLVAGGLGHGEGPEETLVKECDEEAGLPEDLVRQLKPVGVVSYLREGEAGGLQPEVEYVYDLELPPDF---IPAP 139 (180)
T ss_pred CCceeeecccCCCCCCCHHHHHHHHHHHHhCCCHHHHhhceeccEEEEEEEcCCCcEeeeEEEEEEEEcCCCC---eeCC
Confidence 3456 699999999999999999999999999883222 433332 22 233445677888888753221 1234
Q ss_pred CCCceEEEEEEcHHHHHHHhhcCCCCChHHHHHHHHHHHHh
Q psy11834 181 VDEELIEVVEMGLEEAREYLAQDEVRSPSGFLFAMHWFLAA 221 (230)
Q Consensus 181 ~~~E~~~v~wv~~eE~~~~~~~~~~~~~~~~~~a~~~~~~~ 221 (230)
+++|+.++.|++++|+.+++.+|++.. .++++++.|+..+
T Consensus 140 ~~~Ev~~~~~~~~~el~~~l~~g~~~~-~~~lv~~~~~~~~ 179 (180)
T cd03676 140 QDGEVESFRLLTIDEVLRALKEGEFKP-NCALVTLDFLIRH 179 (180)
T ss_pred CCCcEeEEEEECHHHHHHHHHcCCCCc-ccHhHHHHHHhhc
Confidence 678999999999999999999999984 7889999998764
No 16
>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional
Probab=99.75 E-value=1.1e-17 Score=134.67 Aligned_cols=115 Identities=17% Similarity=0.150 Sum_probs=82.9
Q ss_pred ecCeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCH
Q psy11834 45 QHKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSL 124 (230)
Q Consensus 45 ~~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~ 124 (230)
.+.+|++++++. ++++||+| +.+. +..|++|||++|+|||+
T Consensus 6 ~~~~v~~vi~~~-~~~vLl~~-------------r~~~-------------------------~~~W~lPgG~ve~gEs~ 46 (148)
T PRK09438 6 RPVSVLVVIYTP-DLGVLMLQ-------------RADD-------------------------PDFWQSVTGSLEEGETP 46 (148)
T ss_pred CceEEEEEEEeC-CCeEEEEE-------------ecCC-------------------------CCcEeCCcccCCCCCCH
Confidence 467888898884 77899998 4321 24689999999999999
Q ss_pred HHHHHHHHHhhhCCccCCCceEEEE-------EEE------cCCCccCeEEEEEEEEEcCcccccCCCCCCCceEEEEEE
Q psy11834 125 AEIAREEVLEECGYDVPVEKLEKIQ-------TFR------SGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEM 191 (230)
Q Consensus 125 ~eAA~REl~EETGl~v~~~~l~~l~-------~~~------~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv 191 (230)
.+||+||++||||+.+....+..+. .++ ..++..+..+++|++..... .....+|..++.|+
T Consensus 47 ~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~-----~~~~~~E~~~~~W~ 121 (148)
T PRK09438 47 AQTAIREVKEETGIDVLAEQLTLIDCQRSIEYEIFPHWRHRYAPGVTRNTEHWFCLALPHE-----RPVVLTEHLAYQWL 121 (148)
T ss_pred HHHHHHHHHHHhCcCccccceeecccccccccccchhhhhccccccCCceeEEEEEecCCC-----CccccCcccceeeC
Confidence 9999999999999988433333321 111 12344556778898875421 12234488999999
Q ss_pred cHHHHHHHhhcC
Q psy11834 192 GLEEAREYLAQD 203 (230)
Q Consensus 192 ~~eE~~~~~~~~ 203 (230)
+++++.+++...
T Consensus 122 ~~~e~~~~~~~~ 133 (148)
T PRK09438 122 DAREAAALTKSW 133 (148)
T ss_pred CHHHHHHHhcCh
Confidence 999999987544
No 17
>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.74 E-value=3.3e-17 Score=127.97 Aligned_cols=113 Identities=11% Similarity=0.088 Sum_probs=78.8
Q ss_pred CeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCHHH
Q psy11834 47 KDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLAE 126 (230)
Q Consensus 47 ~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~e 126 (230)
.+|++++++ .++++||++ +.+.+ ....|++|||++|+||++.+
T Consensus 3 ~~~~~~i~~-~~~~vLL~~-------------r~~~~-----------------------~~~~w~lPgG~ve~gEt~~e 45 (125)
T cd04679 3 VGCGAAILR-DDGKLLLVK-------------RLRAP-----------------------EAGHWGIPGGKVDWMEAVED 45 (125)
T ss_pred eEEEEEEEC-CCCEEEEEE-------------ecCCC-----------------------CCCeEeCCeeeccCCCCHHH
Confidence 467778777 368999999 54422 24679999999999999999
Q ss_pred HHHHHHHhhhCCccCCCceEEEEEEEcCC--CccCeEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHHHHhh
Q psy11834 127 IAREEVLEECGYDVPVEKLEKIQTFRSGV--GSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLA 201 (230)
Q Consensus 127 AA~REl~EETGl~v~~~~l~~l~~~~~~~--~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~~~~ 201 (230)
||+||++||||+.+ .....++.+.... .......++|++...... ....+++|+.++.|++++++.+.+.
T Consensus 46 aa~RE~~EEtGl~~--~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~---~~~~~~~E~~~~~W~~~~~l~~~l~ 117 (125)
T cd04679 46 AVVREIEEETGLSI--HSTRLLCVVDHIIEEPPQHWVAPVYLAENFSGE---PRLMEPDKLLELGWFALDALPQPLT 117 (125)
T ss_pred HHHHHHHHHHCCCc--ccceEEEEEeecccCCCCeEEEEEEEEeecCCc---cccCCCccccEEEEeCHHHCCchhH
Confidence 99999999999998 5555554432211 122334456777754321 1112456888999999999976554
No 18
>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,
Probab=99.74 E-value=1.3e-16 Score=125.89 Aligned_cols=91 Identities=24% Similarity=0.286 Sum_probs=63.5
Q ss_pred CcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceEE
Q psy11834 108 GVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIE 187 (230)
Q Consensus 108 ~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~ 187 (230)
+..|++|||++++||++.+||.||++||||+.+....+.....+...........++|++....... ....+.|+.+
T Consensus 23 ~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~---~~~~~~e~~~ 99 (134)
T cd03675 23 GLVFNQPAGHLEPGESLIEAAVRETLEETGWHVEPTALLGIYQWTAPDSDTTYLRFAFAAELLEHLP---DQPLDSGIVR 99 (134)
T ss_pred CceEECCCccCCCCCCHHHHHHHHHHHHHCcccccceEEEEEEeecCCCCeeEEEEEEEEEECCCCC---CCCCCCCcee
Confidence 4679999999999999999999999999999984333333333332221222334567777653211 1123568899
Q ss_pred EEEEcHHHHHHHhh
Q psy11834 188 VVEMGLEEAREYLA 201 (230)
Q Consensus 188 v~wv~~eE~~~~~~ 201 (230)
+.|++++++..+..
T Consensus 100 ~~w~~~~el~~~~~ 113 (134)
T cd03675 100 AHWLTLEEILALAA 113 (134)
T ss_pred eEEEeHHHHHhhhh
Confidence 99999999999876
No 19
>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.74 E-value=2.3e-17 Score=127.14 Aligned_cols=108 Identities=17% Similarity=0.166 Sum_probs=81.8
Q ss_pred eEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCHHHH
Q psy11834 48 DYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLAEI 127 (230)
Q Consensus 48 ~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~eA 127 (230)
++.+++++. ++++||+| +.. .+ .|++|||++++||++.+|
T Consensus 2 ~~~~~i~~~-~~~vLL~~-------------r~~-------------------------~~-~w~~PgG~ve~gEt~~~a 41 (120)
T cd04680 2 GARAVVTDA-DGRVLLVR-------------HTY-------------------------GP-GWYLPGGGLERGETFAEA 41 (120)
T ss_pred ceEEEEECC-CCeEEEEE-------------ECC-------------------------CC-cEeCCCCcCCCCCCHHHH
Confidence 567788874 67999998 432 12 688999999999999999
Q ss_pred HHHHHHhhhCCccCCC-ceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHHHHhh
Q psy11834 128 AREEVLEECGYDVPVE-KLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLA 201 (230)
Q Consensus 128 A~REl~EETGl~v~~~-~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~~~~ 201 (230)
|+||++||||+.+ . .+..++.+..........+++|.+...... ...+++|+.++.|++++++.+++.
T Consensus 42 a~REl~EEtG~~~--~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~----~~~~~~E~~~~~w~~~~~l~~~~~ 110 (120)
T cd04680 42 ARRELLEELGIRL--AVVAELLGVYYHSASGSWDHVIVFRARADTQP----VIRPSHEISEARFFPPDALPEPTT 110 (120)
T ss_pred HHHHHHHHHCCcc--ccccceEEEEecCCCCCceEEEEEEecccCCC----ccCCcccEEEEEEECHHHCcccCC
Confidence 9999999999999 6 666666665554445567788888754321 123567899999999999987543
No 20
>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.73 E-value=5.2e-17 Score=126.35 Aligned_cols=88 Identities=19% Similarity=0.091 Sum_probs=68.4
Q ss_pred CCcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceE
Q psy11834 107 LGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELI 186 (230)
Q Consensus 107 ~~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~ 186 (230)
.+..|+||||++++||++.+||.||++||||+.+ ..+.++..++...+ ....+++|.+.... +....+|..
T Consensus 25 ~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~--~~~~~l~~~~~~~~-~~~~~~~~~~~~~~------~~~~~~E~~ 95 (117)
T cd04691 25 DPGKLNIPGGHIEAGESQEEALLREVQEELGVDP--LSYTYLCSLYHPTS-ELQLLHYYVVTFWQ------GEIPAQEAA 95 (117)
T ss_pred CCCeEECcceeecCCCCHHHHHHHHHHHHHCCCc--ccceEEEEEeccCC-CeEEEEEEEEEEec------CCCCccccc
Confidence 3567999999999999999999999999999997 67777777766544 44567777777432 122346888
Q ss_pred EEEEEcHHHHHHHhhcC
Q psy11834 187 EVVEMGLEEAREYLAQD 203 (230)
Q Consensus 187 ~v~wv~~eE~~~~~~~~ 203 (230)
++.|++++++..+...+
T Consensus 96 ~~~W~~~~~l~~~~~~~ 112 (117)
T cd04691 96 EVHWMTANDIVLASEAD 112 (117)
T ss_pred ccEEcCHHHcchhhhhH
Confidence 99999999998765443
No 21
>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD. The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.
Probab=99.73 E-value=1.5e-16 Score=130.92 Aligned_cols=113 Identities=22% Similarity=0.259 Sum_probs=94.1
Q ss_pred eeEeecCeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCC
Q psy11834 41 FLITQHKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDK 120 (230)
Q Consensus 41 ~~~~~~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~ 120 (230)
..+..++.|.|++.. ++++||++ |++ ..|++|||++|+
T Consensus 19 ~~~~~~~~V~ii~~~--~~~~LL~~-------------~~~---------------------------~~~elPgG~vE~ 56 (156)
T TIGR02705 19 PFSPNPNHVLVIPRY--KDQWLLTE-------------HKR---------------------------RGLEFPGGKVEP 56 (156)
T ss_pred cccCCCCEEEEEEEE--CCEEEEEE-------------EcC---------------------------CcEECCceecCC
Confidence 345667888887775 56999999 653 348999999999
Q ss_pred CCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceEEEE-EEcHHHHHHH
Q psy11834 121 NKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVV-EMGLEEAREY 199 (230)
Q Consensus 121 GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~-wv~~eE~~~~ 199 (230)
|||+.+||+||++||||+.+ ..+..++.+..+++.++...++|+|.+.... ..+|.+++. +++++++.++
T Consensus 57 gEt~~eaA~REl~EETG~~~--~~~~~lg~~~~~~~~~~~~~~vf~A~~~~~~-------~~~e~~E~~~~~~~~~~~~~ 127 (156)
T TIGR02705 57 GETSKEAAIREVMEETGAIV--KELHYIGQYEVEGESTDFVKDVYFAEVSALE-------SKDDYLETKGPVLLQEIPDI 127 (156)
T ss_pred CCCHHHHHHHHHHHHhCcEe--eeeEEEEEEEecCCCcEEEEEEEEEEEeccc-------cCCCceeeEeEEEHHHHHHH
Confidence 99999999999999999999 8999999998888778888999999975221 225667777 7999999999
Q ss_pred hhcCC
Q psy11834 200 LAQDE 204 (230)
Q Consensus 200 ~~~~~ 204 (230)
+..|.
T Consensus 128 ~~~g~ 132 (156)
T TIGR02705 128 IKADP 132 (156)
T ss_pred HhcCC
Confidence 99997
No 22
>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.72 E-value=4.3e-17 Score=127.82 Aligned_cols=119 Identities=16% Similarity=0.151 Sum_probs=83.2
Q ss_pred eEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEee-eeecCCCCCHHH
Q psy11834 48 DYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFC-AGIVDKNKSLAE 126 (230)
Q Consensus 48 ~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elP-gG~VE~GEs~~e 126 (230)
.|.+++++ .++++||+| +.+... ..+..|++| ||++++||++ +
T Consensus 2 ~v~v~~~~-~~g~vLl~~-------------R~~~~~---------------------~~pg~w~~p~GG~ve~gE~~-~ 45 (127)
T cd04693 2 VVHVCIFN-SKGELLLQK-------------RSPNKD---------------------GWPGMWDLSVGGHVQAGETS-T 45 (127)
T ss_pred eEEEEEEe-CCCeEEEEE-------------ccCCCC---------------------CCCCcccccCCCcCCCCCCH-H
Confidence 46777777 478999987 433221 124578998 8999999999 9
Q ss_pred HHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHHHHhhcCCCC
Q psy11834 127 IAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQDEVR 206 (230)
Q Consensus 127 AA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~~~~~~~~~ 206 (230)
||+||++||||+.+....+..+..+..... .....++|++.... .....+.+|+.++.|++++++.+++.++++.
T Consensus 46 aa~REl~EEtGl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~E~~~~~w~~~~el~~~~~~~~~~ 120 (127)
T cd04693 46 AAEREVKEELGLELDFSELRPLFRYFFEAE-GFDDYYLFYADVEI----GKLILQKEEVDEVKFVSKDEIDGLIGHGEFT 120 (127)
T ss_pred HHHHHHHHHhCCCcChhhcEEEEEEEeecC-CeEEEEEEEecCcc----cccccCHHHhhhEEEeCHHHHHHHHhcCCcc
Confidence 999999999999985556666666654332 12223344333211 1122356788999999999999999999986
Q ss_pred C
Q psy11834 207 S 207 (230)
Q Consensus 207 ~ 207 (230)
.
T Consensus 121 ~ 121 (127)
T cd04693 121 P 121 (127)
T ss_pred c
Confidence 3
No 23
>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.
Probab=99.72 E-value=4.4e-17 Score=133.34 Aligned_cols=115 Identities=17% Similarity=0.082 Sum_probs=85.4
Q ss_pred cCeEEEEEEEcC-CCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCC-CC
Q psy11834 46 HKDYYIVMNKIT-EAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKN-KS 123 (230)
Q Consensus 46 ~~~v~vl~~~~~-~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~G-Es 123 (230)
+.+|.|++++.+ ++++||+| +.+... ..+..|++|||++|+| |+
T Consensus 2 ~~av~v~l~~~~~~~~vLL~~-------------R~~~~~---------------------~~~g~w~lPGG~ve~gdEs 47 (157)
T cd03426 2 RAAVLVLLVEREGELRVLLTK-------------RASHLR---------------------SHPGQVAFPGGKVDPGDED 47 (157)
T ss_pred ceEEEEEEEeCCCceEEEEEE-------------cccccc---------------------cCCCcEECCCCCcCCCcCC
Confidence 567888888754 36999998 443321 1345789999999999 99
Q ss_pred HHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHHHH
Q psy11834 124 LAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREY 199 (230)
Q Consensus 124 ~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~~ 199 (230)
+.+||+||++||||+.+ ..+..++.+.......+..+++|++..... .....+++|+.++.|++++++.+.
T Consensus 48 ~~eaa~REl~EEtGl~~--~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~~E~~~~~W~~~~el~~~ 118 (157)
T cd03426 48 PVATALREAEEEIGLPP--DSVEVLGRLPPYYTRSGFVVTPVVGLVPPP---LPLVLNPDEVAEVFEVPLSFLLDP 118 (157)
T ss_pred HHHHHHHHHHHHhCCCc--cceEEEEECCCccccCCCEEEEEEEEECCC---CCCCCCHHHhheeEEEcHHHHhCc
Confidence 99999999999999998 777777765433334456677888876432 122335668999999999999875
No 24
>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.72 E-value=9.3e-17 Score=129.06 Aligned_cols=125 Identities=18% Similarity=0.194 Sum_probs=89.3
Q ss_pred cCeEEEEEEEcCC--CEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEe-eeeecCCCC
Q psy11834 46 HKDYYIVMNKITE--AQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEF-CAGIVDKNK 122 (230)
Q Consensus 46 ~~~v~vl~~~~~~--~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el-PgG~VE~GE 122 (230)
|.+|.|++++..+ +++|+.+ |..... ..+..|++ |||++++||
T Consensus 2 h~~v~~~v~~~~~~~~~vLl~~---------------R~~~~~-------------------~~pg~W~~~~gG~ve~gE 47 (144)
T cd04692 2 HRTFHCWIITKDEGKGYVLLQK---------------RSANKK-------------------TYPGLWDISSAGHILAGE 47 (144)
T ss_pred ceEEEEEEEEccCCCCEEEEEe---------------cCCCCC-------------------CCCCccccccCcccCCCC
Confidence 7889999998642 6777766 543210 12457888 599999999
Q ss_pred CHHHHHHHHHHhhhCCccCCCceEEEEEEEcCC-----CccCeEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHH
Q psy11834 123 SLAEIAREEVLEECGYDVPVEKLEKIQTFRSGV-----GSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAR 197 (230)
Q Consensus 123 s~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~-----~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~ 197 (230)
++.+||+||++||||+.+....+..++.+.... .......++|++...... ......++|+.++.|++++++.
T Consensus 48 t~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~--~~~~~~~~E~~~~~W~~~~el~ 125 (144)
T cd04692 48 TPLEDGIRELEEELGLDVSADDLIPLGTFKIEYDHIGKLIDREFHHVYLYELKVPL--EEFTLQKEEVAGVVLIPLDEFA 125 (144)
T ss_pred CHHHHHHHHHHHHhCCCCChHHeEEeeEEEEeccccCCCccceEEEEEEEeccCCh--hhcCCChhHhheEEEECHHHHH
Confidence 999999999999999987556777776644321 123345678888754211 1122356789999999999999
Q ss_pred HHhhcCCCC
Q psy11834 198 EYLAQDEVR 206 (230)
Q Consensus 198 ~~~~~~~~~ 206 (230)
+++.+....
T Consensus 126 ~~~~~~~~~ 134 (144)
T cd04692 126 ELLEEEDHK 134 (144)
T ss_pred HHHHcCCCC
Confidence 999887654
No 25
>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.72 E-value=1e-16 Score=123.66 Aligned_cols=108 Identities=15% Similarity=0.119 Sum_probs=75.1
Q ss_pred eEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCHHHH
Q psy11834 48 DYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLAEI 127 (230)
Q Consensus 48 ~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~eA 127 (230)
++++++++ ++++||+| +.+.+ ....|++|||++++||++.+|
T Consensus 2 ~v~~ii~~--~~~vLl~~-------------r~~~~-----------------------~~~~w~~PgG~ie~gE~~~~a 43 (122)
T cd04673 2 AVGAVVFR--GGRVLLVR-------------RANPP-----------------------DAGLWSFPGGKVELGETLEQA 43 (122)
T ss_pred cEEEEEEE--CCEEEEEE-------------EcCCC-----------------------CCCeEECCCcccCCCCCHHHH
Confidence 45667776 57999999 65532 245789999999999999999
Q ss_pred HHHHHHhhhCCccCCCceEEEEE--E-EcCCC---ccCeEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHHHHh
Q psy11834 128 AREEVLEECGYDVPVEKLEKIQT--F-RSGVG---SAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYL 200 (230)
Q Consensus 128 A~REl~EETGl~v~~~~l~~l~~--~-~~~~~---~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~~~ 200 (230)
|.||++||||+.+ ..+..++. + +..++ .....++.|++...... ...+.|+.++.|++++++.++.
T Consensus 44 a~RE~~EEtGl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~E~~~~~w~~~~el~~~~ 115 (122)
T cd04673 44 ALRELLEETGLEA--EVGRLLTVVDVIERDAAGRVEFHYVLIDFLCRYLGGE-----PVAGDDALDARWVPLDELAALS 115 (122)
T ss_pred HHHHHHHhhCcEe--eeceeEEEEEEeeccCCCccceEEEEEEEEEEeCCCc-----ccCCcccceeEEECHHHHhhCc
Confidence 9999999999998 44444443 2 22211 12234455666643221 1245688899999999998764
No 26
>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.72 E-value=2.4e-16 Score=123.75 Aligned_cols=93 Identities=20% Similarity=0.234 Sum_probs=64.3
Q ss_pred CcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCC------CccCeEEEEEEEEEcCcccccCCCCC
Q psy11834 108 GVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGV------GSAGDRQTLFFVEVTDDMKVNSGGGV 181 (230)
Q Consensus 108 ~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~------~~s~~~~~~y~a~~~~~~~~~~~~~~ 181 (230)
+..|++|||++++||++.+||.||+.||||+.+....+..+..+.... ...+...++|++..............
T Consensus 24 ~~~~~lPGG~ve~gEt~~~aa~RE~~EEtGl~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~ 103 (128)
T cd04687 24 GVWYILPGGGQEPGETLEDAAHRECKEEIGIDVEIGPLLFVREYIGHNPTSELPGHFHQVELMFECKIKSGTPAKTPSKP 103 (128)
T ss_pred CCeEECCCcccCCCCCHHHHHHHHHHHHHCCccccCcEEEEEEEeccCccccCCCceeEEEEEEEEEECCCCcccccCCC
Confidence 356899999999999999999999999999999655666665554221 12234456777776533211111123
Q ss_pred CCceEEEEEEcHHHHHHHh
Q psy11834 182 DEELIEVVEMGLEEAREYL 200 (230)
Q Consensus 182 ~~E~~~v~wv~~eE~~~~~ 200 (230)
+.+..++.|++++++.++-
T Consensus 104 ~~~~~~~~W~~~~~l~~~~ 122 (128)
T cd04687 104 DPNQIGVEWLKLKELGDIP 122 (128)
T ss_pred CCCEEeeEEEcHHHhCccc
Confidence 4556789999999987653
No 27
>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally
Probab=99.71 E-value=2.3e-16 Score=127.27 Aligned_cols=114 Identities=20% Similarity=0.244 Sum_probs=82.1
Q ss_pred cCeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCHH
Q psy11834 46 HKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLA 125 (230)
Q Consensus 46 ~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~ 125 (230)
+.+|++++++ .++++||+| +.+. +..|.+|||++++||++.
T Consensus 3 ~~~v~~ii~~-~~~~vLL~~-------------r~~~-------------------------~~~W~~PgG~~e~gE~~~ 43 (147)
T cd03671 3 RPNVGVVLFN-EDGKVFVGR-------------RIDT-------------------------PGAWQFPQGGIDEGEDPE 43 (147)
T ss_pred CceEEEEEEe-CCCEEEEEE-------------EcCC-------------------------CCCEECCcCCCCCCcCHH
Confidence 5688888887 478999999 5442 146899999999999999
Q ss_pred HHHHHHHHhhhCCccCCCceEEEEEE-----EcCC----------CccCeEEEEEEEEEcCc-ccccCCCC-CCCceEEE
Q psy11834 126 EIAREEVLEECGYDVPVEKLEKIQTF-----RSGV----------GSAGDRQTLFFVEVTDD-MKVNSGGG-VDEELIEV 188 (230)
Q Consensus 126 eAA~REl~EETGl~v~~~~l~~l~~~-----~~~~----------~~s~~~~~~y~a~~~~~-~~~~~~~~-~~~E~~~v 188 (230)
+||.||++||||+.+ .....++.. +..+ ...+...++|++.+... ..+. ... ++.|+.++
T Consensus 44 ~aA~REv~EEtGl~~--~~~~~l~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-l~~~~~~E~~~~ 120 (147)
T cd03671 44 QAALRELEEETGLDP--DSVEIIAEIPDWLRYDLPPELKLKIWGGRYRGQEQKWFLFRFTGDDSEID-LNAPEHPEFDEW 120 (147)
T ss_pred HHHHHHHHHHHCCCc--CceEEEEEcCCeeEeeChhhhhccccCCcCCCEEEEEEEEEecCCCcccc-CCCCCCCCEeeE
Confidence 999999999999998 554444431 1111 02355678888876542 1111 112 36799999
Q ss_pred EEEcHHHHHHHhh
Q psy11834 189 VEMGLEEAREYLA 201 (230)
Q Consensus 189 ~wv~~eE~~~~~~ 201 (230)
.|++++++.+++.
T Consensus 121 ~W~~~~el~~~~~ 133 (147)
T cd03671 121 RWVPLEELPDLIV 133 (147)
T ss_pred EeCCHHHHHHhch
Confidence 9999999999864
No 28
>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.
Probab=99.71 E-value=1.3e-16 Score=124.45 Aligned_cols=89 Identities=22% Similarity=0.175 Sum_probs=65.7
Q ss_pred cEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEc-CC---CccCeEEEEEEEEEcCcccccCCCCCCCc
Q psy11834 109 VTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRS-GV---GSAGDRQTLFFVEVTDDMKVNSGGGVDEE 184 (230)
Q Consensus 109 ~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~-~~---~~s~~~~~~y~a~~~~~~~~~~~~~~~~E 184 (230)
..|++|||++++||++.+||.||++||||+.+ ..+..++.+.. .+ ......+++|.+....... . ..++.|
T Consensus 27 ~~w~~PgG~v~~gEs~~~aa~REl~EEtGl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~E 101 (131)
T cd03673 27 DDWSLPKGKLEPGETPPEAAVREVEEETGIRA--EVGDPLGTIRYWFSSSGKRVHKTVHWWLMRALGGEF-T--PQPDEE 101 (131)
T ss_pred CcccCCCCccCCCCCHHHHHHHHHhhhhCCce--EecceEEEEEEeccCCCCCcceEEEEEEEEEcCCCc-c--cCCCCc
Confidence 35889999999999999999999999999988 55555554322 11 2345567778777643211 1 125678
Q ss_pred eEEEEEEcHHHHHHHhhc
Q psy11834 185 LIEVVEMGLEEAREYLAQ 202 (230)
Q Consensus 185 ~~~v~wv~~eE~~~~~~~ 202 (230)
+.++.|++++++.+++..
T Consensus 102 ~~~~~W~~~~el~~~~~~ 119 (131)
T cd03673 102 VDEVRWLPPDEARDRLSY 119 (131)
T ss_pred EEEEEEcCHHHHHHHcCC
Confidence 999999999999988763
No 29
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=99.71 E-value=2.3e-16 Score=132.25 Aligned_cols=116 Identities=23% Similarity=0.211 Sum_probs=84.0
Q ss_pred ecCeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCH
Q psy11834 45 QHKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSL 124 (230)
Q Consensus 45 ~~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~ 124 (230)
.|.++.++++| .++++||.+ +.....+ + .++.+.+|||++++|||+
T Consensus 36 ~h~~~~v~v~~-~~g~iLL~~-------------R~~~~~~-----------------~---pg~~~~~pGG~ve~GEs~ 81 (180)
T PRK15393 36 RHRATYIVVHD-GMGKILVQR-------------RTETKDF-----------------L---PGMLDATAGGVVQAGEQL 81 (180)
T ss_pred ceEEEEEEEEC-CCCeEEEEE-------------eCCCCCC-----------------C---CCcccccCCCcCCCCCCH
Confidence 47888888887 478999977 4332221 0 133456899999999999
Q ss_pred HHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHHHHhh
Q psy11834 125 AEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLA 201 (230)
Q Consensus 125 ~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~~~~ 201 (230)
.+||+|||+||||+.+ ..+..++.++..........++|.+... .....++.|+.++.|++++++.+++.
T Consensus 82 ~eAA~REL~EEtGl~~--~~~~~~~~~~~~~~~~~~~~~~f~~~~~-----~~~~~~~~E~~~~~W~~~~el~~~~~ 151 (180)
T PRK15393 82 LESARREAEEELGIAG--VPFAEHGQFYFEDENCRVWGALFSCVSH-----GPFALQEEEVSEVCWMTPEEITARCD 151 (180)
T ss_pred HHHHHHHHHHHHCCCC--ccceeceeEEecCCCceEEEEEEEEEeC-----CCCCCChHHeeEEEECCHHHHhhhhh
Confidence 9999999999999987 6666666665554444444566666532 12233577999999999999999875
No 30
>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability
Probab=99.71 E-value=1.9e-16 Score=122.98 Aligned_cols=114 Identities=18% Similarity=0.171 Sum_probs=80.6
Q ss_pred eEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCHHHH
Q psy11834 48 DYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLAEI 127 (230)
Q Consensus 48 ~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~eA 127 (230)
++.+++++ ++++||+| +.+.+ .+..|.+|||++|+||++.+|
T Consensus 2 ~~~~ii~~--~~~vLl~~-------------~~~~~-----------------------~~~~w~lPgG~ve~gE~~~~a 43 (128)
T cd04684 2 GAYAVIPR--DGKLLLIQ-------------KNGGP-----------------------YEGRWDLPGGGIEPGESPEEA 43 (128)
T ss_pred eeEEEEEe--CCEEEEEE-------------ccCCC-----------------------CCCeEECCCcccCCCCCHHHH
Confidence 45666676 49999999 65543 246789999999999999999
Q ss_pred HHHHHHhhhCCccCCCceEEEEE---EEcCCCc---cCeEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHHHHhh
Q psy11834 128 AREEVLEECGYDVPVEKLEKIQT---FRSGVGS---AGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLA 201 (230)
Q Consensus 128 A~REl~EETGl~v~~~~l~~l~~---~~~~~~~---s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~~~~ 201 (230)
|+||++||||+.+ ..+..++. ++..+.. .....++|.+....... .....+.|..++.|++++++.+...
T Consensus 44 a~RE~~EEtGl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~--~~~~~~~e~~~~~W~~~~~l~~~~~ 119 (128)
T cd04684 44 LHREVLEETGLTV--EIGRRLGSASRYFYSPDGDYDAHHLCVFYDARVVGGAL--PVQEPGEDSHGAAWLPLDEAIERLL 119 (128)
T ss_pred HHHHHHHHhCcEe--ecceeeeEEEEEEECCCCCeeccEEEEEEEEEEecCcc--ccCCCCCCceeeEEECHHHhhccCC
Confidence 9999999999998 55555543 2233322 24566778887653321 0123566788999999999986655
Q ss_pred cC
Q psy11834 202 QD 203 (230)
Q Consensus 202 ~~ 203 (230)
.+
T Consensus 120 ~~ 121 (128)
T cd04684 120 SP 121 (128)
T ss_pred CH
Confidence 43
No 31
>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.70 E-value=2.5e-16 Score=124.02 Aligned_cols=112 Identities=15% Similarity=0.126 Sum_probs=78.2
Q ss_pred EEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCHHHHH
Q psy11834 49 YYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLAEIA 128 (230)
Q Consensus 49 v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~eAA 128 (230)
+++++++ .++++||+| +.+.+. ...|++|||+++.||++.+||
T Consensus 3 ~~~vv~~-~~~~vLl~~-------------r~~~~~-----------------------~~~w~lPgG~ve~gEt~~~aa 45 (123)
T cd04671 3 VAAVILN-NQGEVLLIQ-------------EAKRSC-----------------------RGKWYLPAGRMEPGETIEEAV 45 (123)
T ss_pred EEEEEEc-CCCEEEEEE-------------ecCCCC-----------------------CCeEECceeecCCCCCHHHHH
Confidence 5667676 478999999 665432 457999999999999999999
Q ss_pred HHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHHHHhhcC
Q psy11834 129 REEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQD 203 (230)
Q Consensus 129 ~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~~~~~~ 203 (230)
.||++||||+.+ .....+..... . .....++|.|...+.. ......++.|+.++.|++++++...+..+
T Consensus 46 ~REl~EEtG~~~--~~~~~~~~~~~-~--~~~~~~~f~a~~~~g~-~~~~~~~~~e~~~~~W~~~~el~~~~~~~ 114 (123)
T cd04671 46 KREVKEETGLDC--EPTTLLSVEEQ-G--GSWFRFVFTGNITGGD-LKTEKEADSESLQARWYSNKDLPLPLRAH 114 (123)
T ss_pred HHHHHHHHCCee--ecceEEEEEcc-C--CeEEEEEEEEEEeCCe-EccCCCCCcceEEEEEECHHHCCCccchh
Confidence 999999999999 55544443222 2 2245567777755322 11112245688899999999995444333
No 32
>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.
Probab=99.70 E-value=2e-16 Score=125.61 Aligned_cols=111 Identities=21% Similarity=0.176 Sum_probs=80.7
Q ss_pred eEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCHHHH
Q psy11834 48 DYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLAEI 127 (230)
Q Consensus 48 ~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~eA 127 (230)
+|.+++.+ .++++||+| +.+.+ ...|.+|||++++||++.+|
T Consensus 2 ~v~i~l~~-~~~~vLL~~-------------r~~~~------------------------~~~w~lPgG~ie~gEt~~~a 43 (131)
T cd03429 2 AVIVLVID-GGDRILLAR-------------QPRFP------------------------PGMYSLLAGFVEPGESLEEA 43 (131)
T ss_pred eEEEEEEe-CCCEEEEEE-------------ecCCC------------------------CCcCcCCcccccCCCCHHHH
Confidence 46666666 358999999 65432 23577999999999999999
Q ss_pred HHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHHHHhhcCCC
Q psy11834 128 AREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQDEV 205 (230)
Q Consensus 128 A~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~~~~~~~~ 205 (230)
|.||++||||+.+ ..+..++.+... ..+...+.|++..... ....++.|+.++.|++++++.++ ..+..
T Consensus 44 A~REl~EEtGl~~--~~~~~l~~~~~~--~~~~~~~~f~~~~~~~----~~~~~~~E~~~~~w~~~~el~~~-~~~~~ 112 (131)
T cd03429 44 VRREVKEEVGIRV--KNIRYVGSQPWP--FPSSLMLGFTAEADSG----EIVVDDDELEDARWFSRDEVRAA-GEGLP 112 (131)
T ss_pred HhhhhhhccCcee--eeeEEEeecCCC--CCceEEEEEEEEEcCC----cccCCchhhhccEeecHHHHhhc-ccCCc
Confidence 9999999999999 777777653222 1244567788876531 12235678889999999999997 44433
No 33
>PRK00714 RNA pyrophosphohydrolase; Reviewed
Probab=99.70 E-value=4.6e-16 Score=127.46 Aligned_cols=115 Identities=19% Similarity=0.217 Sum_probs=83.6
Q ss_pred cCeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCHH
Q psy11834 46 HKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLA 125 (230)
Q Consensus 46 ~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~ 125 (230)
+.+|++++++ .++++||+| +.+. +..|++|||++++||++.
T Consensus 8 ~~~v~~~i~~-~~g~vLL~~-------------r~~~-------------------------~~~w~~P~G~~~~gE~~~ 48 (156)
T PRK00714 8 RPNVGIILLN-RQGQVFWGR-------------RIGQ-------------------------GHSWQFPQGGIDPGETPE 48 (156)
T ss_pred CCeEEEEEEe-cCCEEEEEE-------------EcCC-------------------------CCeEECCcccCCCCcCHH
Confidence 5688888888 478999999 5432 246899999999999999
Q ss_pred HHHHHHHHhhhCCccCCCceEEEEEEE--------------cCCCccCeEEEEEEEEEcCcc-cccCCCCCCCceEEEEE
Q psy11834 126 EIAREEVLEECGYDVPVEKLEKIQTFR--------------SGVGSAGDRQTLFFVEVTDDM-KVNSGGGVDEELIEVVE 190 (230)
Q Consensus 126 eAA~REl~EETGl~v~~~~l~~l~~~~--------------~~~~~s~~~~~~y~a~~~~~~-~~~~~~~~~~E~~~v~w 190 (230)
+||.||++||||+.+ ..+..++.+. ..++..+...++|++...... .+.....+++|+.++.|
T Consensus 49 ~aa~REl~EEtG~~~--~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~l~~~~~~E~~~~~W 126 (156)
T PRK00714 49 QAMYRELYEEVGLRP--EDVEILAETRDWLRYDLPKRLVRRSKGVYRGQKQKWFLLRLTGDDSEINLNTTSHPEFDAWRW 126 (156)
T ss_pred HHHHHHHHHHhCCCc--cceEEEEEcCCeEEecCcHHHhhccCCcccCcEEEEEEEEecCCCccccCCCCCCCCeeeeEe
Confidence 999999999999988 6666555431 122334456778888864321 11111124579999999
Q ss_pred EcHHHHHHHhh
Q psy11834 191 MGLEEAREYLA 201 (230)
Q Consensus 191 v~~eE~~~~~~ 201 (230)
++++++.+++.
T Consensus 127 ~~~del~~~~~ 137 (156)
T PRK00714 127 VSYWYPLDQVV 137 (156)
T ss_pred CCHHHHHHhch
Confidence 99999998763
No 34
>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.69 E-value=5.3e-16 Score=121.33 Aligned_cols=86 Identities=22% Similarity=0.252 Sum_probs=59.4
Q ss_pred CcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCccccc-CCC----CCC
Q psy11834 108 GVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVN-SGG----GVD 182 (230)
Q Consensus 108 ~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~-~~~----~~~ 182 (230)
...|+||||++++||++.+||+||++||||+.+. ....++.+.. . +...++|.|......... ... .++
T Consensus 24 ~~~w~lPGG~ve~gEs~~~a~~REl~EEtGl~~~--~~~~~~~~~~-~---~~~~~~f~~~~~~g~~~~~~~~e~~~~~~ 97 (121)
T cd04669 24 KTYYVFPGGGIEEGETPEEAAKREALEELGLDVR--VEEIFLIVNQ-N---GRTEHYFLARVISGKLGLGVGEEFERQSD 97 (121)
T ss_pred CCcEECCceeccCCCCHHHHHHHHHHHhhCeeEe--eeeEEEEEee-C---CcEEEEEEEEEECCeecCCCchhhcccCC
Confidence 3579999999999999999999999999999983 3333333222 1 234678888764322111 100 124
Q ss_pred CceEEEEEEcHHHHHHH
Q psy11834 183 EELIEVVEMGLEEAREY 199 (230)
Q Consensus 183 ~E~~~v~wv~~eE~~~~ 199 (230)
.+..++.|++++++..+
T Consensus 98 ~~~~~~~Wv~~~el~~l 114 (121)
T cd04669 98 DNQYHPVWVDLDQLETI 114 (121)
T ss_pred CCceEEEEEEHHHcccC
Confidence 56788999999999875
No 35
>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.68 E-value=1e-15 Score=120.57 Aligned_cols=89 Identities=21% Similarity=0.122 Sum_probs=64.8
Q ss_pred cEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCce-EEEEEEEcCCCc----cCeEEEEEEEEEcCcccccCCCCCCC
Q psy11834 109 VTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKL-EKIQTFRSGVGS----AGDRQTLFFVEVTDDMKVNSGGGVDE 183 (230)
Q Consensus 109 ~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l-~~l~~~~~~~~~----s~~~~~~y~a~~~~~~~~~~~~~~~~ 183 (230)
..|.+|||++|+|||+.+||+||++||||+.+ ... ..++.+...... ....+++|.+...... ....+.
T Consensus 26 ~~w~~PgG~ve~~E~~~~aa~RE~~EEtG~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~f~~~~~~~~----~~~~~~ 99 (122)
T cd04666 26 GRWIVPKGGPEKDESPAEAAAREAWEEAGVRG--KIGKRPLGRFEYRKRSKNRPPRCEVAVFPLEVTEEL----DEWPEM 99 (122)
T ss_pred CeEECCCCCcCCCCCHHHHHHHHHHHHhCCcc--cccceEEEEEEeeecCCCCCceEEEEEEEEEEeccc----cCCccc
Confidence 35789999999999999999999999999988 444 666665432221 2445667777654321 122345
Q ss_pred ceEEEEEEcHHHHHHHhhcC
Q psy11834 184 ELIEVVEMGLEEAREYLAQD 203 (230)
Q Consensus 184 E~~~v~wv~~eE~~~~~~~~ 203 (230)
+..++.|++++++.+++...
T Consensus 100 e~~~~~W~~~~ea~~~~~~~ 119 (122)
T cd04666 100 HQRKRKWFSPEEAALLVEEP 119 (122)
T ss_pred CceEEEEecHHHHHHhcCCh
Confidence 67899999999999988654
No 36
>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.68 E-value=5.5e-16 Score=121.67 Aligned_cols=118 Identities=22% Similarity=0.155 Sum_probs=83.4
Q ss_pred cCeEEEEEEEc-CCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCH
Q psy11834 46 HKDYYIVMNKI-TEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSL 124 (230)
Q Consensus 46 ~~~v~vl~~~~-~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~ 124 (230)
+++|+|++++. .++++||+| +.+. .+..|++|||++++||++
T Consensus 1 ~~~~~v~~~~~~~~~~vLL~~-------------r~~~------------------------~~~~w~~PgG~ve~~Es~ 43 (129)
T cd04664 1 PRSVLVVPYRLTGEGRVLLLR-------------RSDK------------------------YAGFWQSVTGGIEDGESP 43 (129)
T ss_pred CcEEEEEEEEeCCCCEEEEEE-------------eCCC------------------------CCCcccccCcccCCCCCH
Confidence 35788898883 168999999 5443 135688999999999999
Q ss_pred HHHHHHHHHhhhCCccCCCceEEEEEEE-----cCCC-ccCeEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHHH
Q psy11834 125 AEIAREEVLEECGYDVPVEKLEKIQTFR-----SGVG-SAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEARE 198 (230)
Q Consensus 125 ~eAA~REl~EETGl~v~~~~l~~l~~~~-----~~~~-~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~ 198 (230)
.+||.||++||||+.+ ..+..+.... .... ......++|++.+.... ....++|..++.|++++++.+
T Consensus 44 ~~aa~RE~~EE~Gl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~----~~~~~~E~~~~~W~~~~e~~~ 117 (129)
T cd04664 44 AEAARREVAEETGLDP--ERLTLLDRGASIAFVEFTDNGRVWTEHPFAFHLPSDA----VVTLDWEHDAFEWVPPEEAAA 117 (129)
T ss_pred HHHHHHHHHHHHCCCh--hheEEEeecccccccccCCCceEEEEeEEEEEcCCCC----cccCCccccccEecCHHHHHH
Confidence 9999999999999988 5555444321 1111 12345678888764321 112456788999999999999
Q ss_pred HhhcCCCC
Q psy11834 199 YLAQDEVR 206 (230)
Q Consensus 199 ~~~~~~~~ 206 (230)
++..+..+
T Consensus 118 ~~~~~~~~ 125 (129)
T cd04664 118 LLLWESNR 125 (129)
T ss_pred HHcChhhh
Confidence 87765443
No 37
>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil
Probab=99.68 E-value=6.3e-16 Score=123.50 Aligned_cols=111 Identities=19% Similarity=0.136 Sum_probs=74.7
Q ss_pred ecCeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCH
Q psy11834 45 QHKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSL 124 (230)
Q Consensus 45 ~~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~ 124 (230)
+|.++++++++..++++||+| +.+. ..|.+|||++|+||++
T Consensus 1 ~~~~~~~~v~~~~~~~vLLv~-------------r~~~--------------------------~~w~lPgG~ve~gE~~ 41 (138)
T cd03674 1 GHFTASAFVVNPDRGKVLLTH-------------HRKL--------------------------GSWLQPGGHIDPDESL 41 (138)
T ss_pred CcEEEEEEEEeCCCCeEEEEE-------------EcCC--------------------------CcEECCceecCCCCCH
Confidence 367888999985338999999 5431 2467999999999999
Q ss_pred HHHHHHHHHhhhCCccCCCceEEEE-----EEEcCCCc------cC-eEEEEEEEEEcCcccccCCCCCCCceEEEEEEc
Q psy11834 125 AEIAREEVLEECGYDVPVEKLEKIQ-----TFRSGVGS------AG-DRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMG 192 (230)
Q Consensus 125 ~eAA~REl~EETGl~v~~~~l~~l~-----~~~~~~~~------s~-~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~ 192 (230)
.+||.||++||||+.+ ..+...+ .+....+. .. ....+|++....... ....++|..++.|++
T Consensus 42 ~~aa~REl~EEtGl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~---~~~~~~E~~~~~W~~ 116 (138)
T cd03674 42 LEAALRELREETGIEL--LGLRPLSVLVDLDVHPIDGHPKRGVPGHLHLDLRFLAVAPADDV---APPKSDESDAVRWFP 116 (138)
T ss_pred HHHHHHHHHHHHCCCc--ccceeccccccceeEeecCCCCCCCCCcEEEEEEEEEEccCccc---cCCCCCcccccEEEc
Confidence 9999999999999987 4443321 11111111 11 123357776432211 012466888999999
Q ss_pred HHHHHHH
Q psy11834 193 LEEAREY 199 (230)
Q Consensus 193 ~eE~~~~ 199 (230)
++++..+
T Consensus 117 ~~el~~~ 123 (138)
T cd03674 117 LDELASL 123 (138)
T ss_pred HHHhhhc
Confidence 9999764
No 38
>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.67 E-value=9.1e-16 Score=120.12 Aligned_cols=111 Identities=18% Similarity=0.120 Sum_probs=73.6
Q ss_pred cCeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCHH
Q psy11834 46 HKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLA 125 (230)
Q Consensus 46 ~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~ 125 (230)
..+|++++++ .++++||+| +... ....|++|||++++|||+.
T Consensus 2 ~~~~~~~v~~-~~~~vLl~~-------------r~~~------------------------~~~~w~~PGG~ve~gEt~~ 43 (127)
T cd04670 2 TVGVGGLVLN-EKNEVLVVQ-------------ERNK------------------------TPNGWKLPGGLVDPGEDIF 43 (127)
T ss_pred eeEEEEEEEc-CCCeEEEEE-------------ccCC------------------------CCCcEECCCccCCCCCCHH
Confidence 3467777777 368999998 4322 1356899999999999999
Q ss_pred HHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHHH
Q psy11834 126 EIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEARE 198 (230)
Q Consensus 126 eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~ 198 (230)
+||.||++||||+.+ .....+...............+|++.+.... .....+++|..++.|++++++.+
T Consensus 44 ~aa~RE~~EE~Gl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~E~~~~~w~~~~el~~ 112 (127)
T cd04670 44 DGAVREVLEETGIDT--EFVSVVGFRHAHPGAFGKSDLYFICRLKPLS--FDINFDTSEIAAAKWMPLEEYIS 112 (127)
T ss_pred HHHHHHHHHHHCCCc--ceeEEEEEEecCCCCcCceeEEEEEEEccCc--CcCCCChhhhheeEEEcHHHHhc
Confidence 999999999999988 5454444332222222222233444442111 11123567888999999999954
No 39
>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.67 E-value=6.3e-16 Score=121.19 Aligned_cols=107 Identities=19% Similarity=0.206 Sum_probs=75.0
Q ss_pred eEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCHHHH
Q psy11834 48 DYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLAEI 127 (230)
Q Consensus 48 ~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~eA 127 (230)
+|++++++. ++++||++ +.+.+ ....|++|||++++||++.+|
T Consensus 3 av~~~i~~~-~~~vLL~~-------------r~~~~-----------------------~~~~w~~PgG~ve~gEs~~~a 45 (130)
T cd04681 3 AVGVLILNE-DGELLVVR-------------RAREP-----------------------GKGTLDLPGGFVDPGESAEEA 45 (130)
T ss_pred eEEEEEEcC-CCcEEEEE-------------ecCCC-----------------------CCCcEeCCceeecCCCCHHHH
Confidence 677888874 67999998 54432 134689999999999999999
Q ss_pred HHHHHHhhhCCccCCCceEEEEEEE---cCCCccCeEEE-EEEEEEcCcccccCCCCCCCceEEEEEEcHHHHH
Q psy11834 128 AREEVLEECGYDVPVEKLEKIQTFR---SGVGSAGDRQT-LFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAR 197 (230)
Q Consensus 128 A~REl~EETGl~v~~~~l~~l~~~~---~~~~~s~~~~~-~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~ 197 (230)
|.||++||||+.+ ..+..++.+. ...+.....++ +|++..... ....+.+|+.++.|++++++.
T Consensus 46 a~RE~~EEtGl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~e~~~~~W~~~~el~ 113 (130)
T cd04681 46 LIREIREETGLKV--TELSYLFSLPNTYPYGGMEYDTLDLFFVCQVDDK----PIVKAPDDVAELKWVVPQDIE 113 (130)
T ss_pred HHHHHHHHhCCcc--cceeEEEeecceeeeCCceeEEEEEEEEEEeCCC----CCcCChHHhheeEEecHHHCC
Confidence 9999999999998 6677666542 22222223333 455654322 112245688899999999874
No 40
>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.67 E-value=1.1e-15 Score=119.26 Aligned_cols=87 Identities=20% Similarity=0.199 Sum_probs=64.2
Q ss_pred CcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceEE
Q psy11834 108 GVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIE 187 (230)
Q Consensus 108 ~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~ 187 (230)
+..|++|||++++||++.+||.||+.||||+.+....+.....+.. . ......++|.+...... .....++|+.+
T Consensus 28 ~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~-~-~~~~~~~~f~~~~~~~~---~~~~~~~E~~~ 102 (122)
T cd04682 28 PGHWDLPGGHREGGETPLECVLRELLEEIGLTLPESRIPWFRVYPS-A-SPPGTEHVFVVPLTARE---DAILFGDEGQA 102 (122)
T ss_pred CCcEeCCCccccCCCCHHHHHHHHHHHHhCCcccccccceeEeccc-C-CCCceEEEEEEEEecCC---CccccCchhhe
Confidence 4578999999999999999999999999999984334433333322 2 34557788888865321 12235778889
Q ss_pred EEEEcHHHHHHH
Q psy11834 188 VVEMGLEEAREY 199 (230)
Q Consensus 188 v~wv~~eE~~~~ 199 (230)
+.|++++++.+.
T Consensus 103 ~~W~~~~el~~~ 114 (122)
T cd04682 103 LRLMTVEEFLAH 114 (122)
T ss_pred eecccHHHHhhc
Confidence 999999999765
No 41
>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.67 E-value=1.5e-15 Score=118.74 Aligned_cols=86 Identities=23% Similarity=0.151 Sum_probs=57.6
Q ss_pred cEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCc---cCeEEEEEEEEEcCcccccCCCCCCCce
Q psy11834 109 VTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGS---AGDRQTLFFVEVTDDMKVNSGGGVDEEL 185 (230)
Q Consensus 109 ~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~---s~~~~~~y~a~~~~~~~~~~~~~~~~E~ 185 (230)
..|++|||++++|||+.+||.||++||||+.+....+..+..+...+.. .......|++..... ....++|.
T Consensus 26 ~~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~e~ 100 (125)
T cd04696 26 GLWGVPGGKVEWGETLEEALKREFREETGLKLRDIKFAMVQEAIFSEEFHKPAHFVLFDFFARTDGT-----EVTPNEEI 100 (125)
T ss_pred CcEeCCceeccCCCCHHHHHHHHHHHHhCCcccccceEEEEEEeccCCCCCccEEEEEEEEEEecCC-----cccCCccc
Confidence 4689999999999999999999999999999843333222223222221 122234456664321 11234678
Q ss_pred EEEEEEcHHHHHHH
Q psy11834 186 IEVVEMGLEEAREY 199 (230)
Q Consensus 186 ~~v~wv~~eE~~~~ 199 (230)
.++.|++++++.++
T Consensus 101 ~~~~W~~~~el~~~ 114 (125)
T cd04696 101 VEWEWVTPEEALDY 114 (125)
T ss_pred ceeEEECHHHHhcC
Confidence 89999999999765
No 42
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=99.66 E-value=2.2e-15 Score=126.45 Aligned_cols=120 Identities=15% Similarity=0.176 Sum_probs=83.4
Q ss_pred ecCeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEee-eeecCCCCC
Q psy11834 45 QHKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFC-AGIVDKNKS 123 (230)
Q Consensus 45 ~~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elP-gG~VE~GEs 123 (230)
.|.+++|++++ .++++||+| + .... ..+ +..|.+| ||++++||+
T Consensus 33 ~h~av~v~i~~-~~g~vLL~r-------------R--~~~~---------------~~~----PG~w~~~~gG~ve~GEt 77 (184)
T PRK03759 33 LHLAFSCYLFD-ADGRLLVTR-------------R--ALSK---------------KTW----PGVWTNSCCGHPQPGES 77 (184)
T ss_pred eeeEEEEEEEc-CCCeEEEEE-------------c--cCCC---------------CCC----CCcccccccCCCCCCCC
Confidence 47889998888 478999998 3 2110 011 2235565 899999999
Q ss_pred HHHHHHHHHHhhhCCccCCCceEE-EEEEE----cCCCc-cCeEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHH
Q psy11834 124 LAEIAREEVLEECGYDVPVEKLEK-IQTFR----SGVGS-AGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAR 197 (230)
Q Consensus 124 ~~eAA~REl~EETGl~v~~~~l~~-l~~~~----~~~~~-s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~ 197 (230)
+.+||+||++||||+++ ..+.. ++.+. ...+. .+...++|++.... ....+++|+.++.|++++++.
T Consensus 78 ~~~aa~REl~EEtGl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~vf~~~~~~-----~~~~~~~Ev~~~~W~~~~el~ 150 (184)
T PRK03759 78 LEDAVIRRCREELGVEI--TDLELVLPDFRYRATDPNGIVENEVCPVFAARVTS-----ALQPNPDEVMDYQWVDPADLL 150 (184)
T ss_pred HHHHHHHHHHHHhCCCc--cccccccceEEEEEecCCCceeeEEEEEEEEEECC-----CCCCChhHeeeEEEECHHHHH
Confidence 99999999999999988 44332 22211 11222 23456788887542 223356789999999999999
Q ss_pred HHhhcCCCC
Q psy11834 198 EYLAQDEVR 206 (230)
Q Consensus 198 ~~~~~~~~~ 206 (230)
+++.++...
T Consensus 151 ~~i~~~~~~ 159 (184)
T PRK03759 151 RAVDATPWA 159 (184)
T ss_pred HHHHhCCcc
Confidence 999999775
No 43
>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily. This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close
Probab=99.66 E-value=2.3e-15 Score=121.61 Aligned_cols=111 Identities=13% Similarity=0.065 Sum_probs=74.5
Q ss_pred eEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCHHHH
Q psy11834 48 DYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLAEI 127 (230)
Q Consensus 48 ~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~eA 127 (230)
+|++++++ .++++||+| +.+.+ .+..|.+|||++++|||+.+|
T Consensus 14 ~v~~vI~~-~~g~vLl~~-------------R~~~p-----------------------~~g~w~lPGG~ve~gEs~~~a 56 (144)
T cd03430 14 SIDLIVEN-EDGQYLLGK-------------RTNRP-----------------------AQGYWFVPGGRIRKNETLTEA 56 (144)
T ss_pred EEEEEEEe-CCCeEEEEE-------------ccCCC-----------------------CCCcEECCCceecCCCCHHHH
Confidence 67788887 478999998 43221 235688999999999999999
Q ss_pred HHHHHHhhhCCccCCCceEEEEEE---EcC----CCcc-CeEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHHHH
Q psy11834 128 AREEVLEECGYDVPVEKLEKIQTF---RSG----VGSA-GDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREY 199 (230)
Q Consensus 128 A~REl~EETGl~v~~~~l~~l~~~---~~~----~~~s-~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~~ 199 (230)
|+||++||||+.+....+..++.+ +.. ++.. +....+|.+..... .....+.|..++.|++++++.++
T Consensus 57 a~RE~~EE~Gl~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~e~~~~~W~~~~el~~~ 132 (144)
T cd03430 57 FERIAKDELGLEFLISDAELLGVFEHFYDDNFFGDDFSTHYVVLGYVLKLSSN----ELLLPDEQHSEYQWLTSDELLAD 132 (144)
T ss_pred HHHHHHHHHCCCcccccceEEEEEEEEeccccccCCCccEEEEEEEEEEEcCC----cccCCchhccEeEEecHHHHhcC
Confidence 999999999998854422333322 211 1122 22334455654322 11225678889999999999854
No 44
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=99.65 E-value=1.4e-15 Score=134.38 Aligned_cols=118 Identities=14% Similarity=0.139 Sum_probs=85.1
Q ss_pred ccceeeEeecCeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeee
Q psy11834 37 CHPQFLITQHKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAG 116 (230)
Q Consensus 37 ~~~~~~~~~~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG 116 (230)
|....+....++|.+++.+ ++++||+| +.|.+ ...|.+|||
T Consensus 123 c~~~~yp~~~paViv~V~~--~~~iLL~r-------------r~~~~------------------------~g~wslPgG 163 (256)
T PRK00241 123 CRERYYPRIAPCIIVAVRR--GDEILLAR-------------HPRHR------------------------NGVYTVLAG 163 (256)
T ss_pred CCCEECCCCCCEEEEEEEe--CCEEEEEE-------------ccCCC------------------------CCcEeCccc
Confidence 3333444444566555553 68999999 76643 245789999
Q ss_pred ecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHH
Q psy11834 117 IVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEA 196 (230)
Q Consensus 117 ~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~ 196 (230)
++|+|||+++||+||++||||+++ ..+.+++..... ..+...+.|.+..... +...+++|+.++.|++++++
T Consensus 164 ~vE~GEs~eeAa~REv~EEtGl~v--~~~~~~~s~~~~--~p~~lm~~f~a~~~~~----~~~~~~~Ei~~a~W~~~del 235 (256)
T PRK00241 164 FVEVGETLEQCVAREVMEESGIKV--KNLRYVGSQPWP--FPHSLMLGFHADYDSG----EIVFDPKEIADAQWFRYDEL 235 (256)
T ss_pred CCCCCCCHHHHhhhhhhhccCcee--eeeEEEEeEeec--CCCeEEEEEEEEecCC----cccCCcccEEEEEEECHHHC
Confidence 999999999999999999999999 788887765332 2344667888886432 12235679999999999998
Q ss_pred HHHhh
Q psy11834 197 REYLA 201 (230)
Q Consensus 197 ~~~~~ 201 (230)
..+..
T Consensus 236 ~~lp~ 240 (256)
T PRK00241 236 PLLPP 240 (256)
T ss_pred cccCC
Confidence 75433
No 45
>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and
Probab=99.64 E-value=2e-15 Score=118.17 Aligned_cols=91 Identities=25% Similarity=0.248 Sum_probs=66.2
Q ss_pred EEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEE----EEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCce
Q psy11834 110 TLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQ----TFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEEL 185 (230)
Q Consensus 110 ~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~----~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~ 185 (230)
.|++|||++++|||+.+||.||++||||+.+ ..+..+. .+.......+..+++|++....... ...+ +|.
T Consensus 28 ~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~---~~~~-~E~ 101 (130)
T cd03428 28 HWDFPKGHVEPGEDDLEAALRETEEETGITA--EQLFIVLGFKETLNYQVRGKLKTVTYFLAELRPDVE---VKLS-EEH 101 (130)
T ss_pred cCcCCcCCCCCCCCHHHHHHHHHHHHHCCCh--hhhhhhccceeEEEccccCcceEEEEEEEEeCCCCc---cccc-cce
Confidence 4789999999999999999999999999998 5544432 2222222345667788888652211 1123 688
Q ss_pred EEEEEEcHHHHHHHhhcCCCC
Q psy11834 186 IEVVEMGLEEAREYLAQDEVR 206 (230)
Q Consensus 186 ~~v~wv~~eE~~~~~~~~~~~ 206 (230)
.++.|++++++.+++..+.++
T Consensus 102 ~~~~W~~~~e~~~~~~~~~~~ 122 (130)
T cd03428 102 QDYRWLPYEEALKLLTYEDLK 122 (130)
T ss_pred eeEEeecHHHHHHHcCchhHH
Confidence 999999999999998766554
No 46
>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional
Probab=99.64 E-value=3.4e-15 Score=123.23 Aligned_cols=112 Identities=11% Similarity=0.025 Sum_probs=73.9
Q ss_pred eEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCHHHH
Q psy11834 48 DYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLAEI 127 (230)
Q Consensus 48 ~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~eA 127 (230)
+|.+++.+ .+++|||+| +-.. . ....|+||||+|++|||+.+|
T Consensus 19 ~v~~vI~~-~~g~VLL~k-------------R~~~-~----------------------~~g~W~lPGG~VE~GEt~~~A 61 (159)
T PRK15434 19 SLDFIVEN-SRGEFLLGK-------------RTNR-P----------------------AQGYWFVPGGRVQKDETLEAA 61 (159)
T ss_pred EEEEEEEC-CCCEEEEEE-------------ccCC-C----------------------CCCcEECCceecCCCCCHHHH
Confidence 67777776 468999998 3211 1 246799999999999999999
Q ss_pred HHHHHHhhhCCccCCCceEEEE--E-EEcCC-Cc---c-CeEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHHHH
Q psy11834 128 AREEVLEECGYDVPVEKLEKIQ--T-FRSGV-GS---A-GDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREY 199 (230)
Q Consensus 128 A~REl~EETGl~v~~~~l~~l~--~-~~~~~-~~---s-~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~~ 199 (230)
|+||++||||+.+.......++ . ++... .. . .....+|.+..... .....+.|..++.|++++++.+.
T Consensus 62 a~REl~EEtGl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~g----~~~~~~~E~~~~~W~~~~el~~~ 137 (159)
T PRK15434 62 FERLTMAELGLRLPITAGQFYGVWQHFYDDNFSGTDFTTHYVVLGFRLRVAEE----DLLLPDEQHDDYRWLTPDALLAS 137 (159)
T ss_pred HHHHHHHHHCCccccccceEEEEEEeecccccCCCccceEEEEEEEEEEecCC----cccCChHHeeEEEEEeHHHhhhc
Confidence 9999999999987322222222 2 22211 11 1 12344566665321 11224568999999999999865
Q ss_pred h
Q psy11834 200 L 200 (230)
Q Consensus 200 ~ 200 (230)
.
T Consensus 138 ~ 138 (159)
T PRK15434 138 D 138 (159)
T ss_pred c
Confidence 3
No 47
>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp
Probab=99.64 E-value=5.2e-15 Score=115.52 Aligned_cols=86 Identities=16% Similarity=0.140 Sum_probs=59.0
Q ss_pred cEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEE---EEcCCCc-cCeEEEEEEEEEcCcccccCCCCCCCc
Q psy11834 109 VTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQT---FRSGVGS-AGDRQTLFFVEVTDDMKVNSGGGVDEE 184 (230)
Q Consensus 109 ~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~---~~~~~~~-s~~~~~~y~a~~~~~~~~~~~~~~~~E 184 (230)
..|++|||++|+||++.+||.||++||||+++ .....++. ++...+. .....++|++....... ......++|
T Consensus 23 ~~~~lPGG~ve~gEt~~~aa~REl~EEtGl~~--~~~~~l~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~-~~~~~~~~e 99 (125)
T cd04689 23 PHYFLPGGHVEPGETAENALRRELQEELGVAV--SDGRFLGAIENQWHEKGVRTHEINHIFAVESSWLAS-DGPPQADED 99 (125)
T ss_pred CCEECCCCcCCCCCCHHHHHHHHHHHHhCcee--eccEEEEEEeeeeccCCceEEEEEEEEEEEcccccc-cCCccCccc
Confidence 35889999999999999999999999999998 55555543 2222232 23345677776542210 111124567
Q ss_pred eEEEEEEcHHHHH
Q psy11834 185 LIEVVEMGLEEAR 197 (230)
Q Consensus 185 ~~~v~wv~~eE~~ 197 (230)
+.++.|++++++.
T Consensus 100 ~~~~~W~~~~el~ 112 (125)
T cd04689 100 HLSFSWVPVSDLS 112 (125)
T ss_pred eEEEEEccHHHcc
Confidence 8999999999964
No 48
>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily. MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m
Probab=99.64 E-value=2.2e-15 Score=119.10 Aligned_cols=86 Identities=14% Similarity=0.060 Sum_probs=61.1
Q ss_pred CcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcC-CC-ccCeEEEEEEEEEcCcccccCCCCCCCce
Q psy11834 108 GVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSG-VG-SAGDRQTLFFVEVTDDMKVNSGGGVDEEL 185 (230)
Q Consensus 108 ~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~-~~-~s~~~~~~y~a~~~~~~~~~~~~~~~~E~ 185 (230)
...|++|||++++||++.+||+||++||||+.+ ..+..++.+... ++ ......++|.+...... .....|.
T Consensus 25 ~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~--~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~-----~~~~~e~ 97 (137)
T cd03427 25 WGGWNGPGGKVEPGETPEECAIRELKEETGLTI--DNLKLVGIIKFPFPGEEERYGVFVFLATEFEGE-----PLKESEE 97 (137)
T ss_pred CCeEeCCceeCCCCCCHHHHHHHHHHHhhCeEe--ecceEEEEEEEEcCCCCcEEEEEEEEECCcccc-----cCCCCcc
Confidence 456899999999999999999999999999999 555555554322 22 23445666776643211 1124555
Q ss_pred EEEEEEcHHHHHHHh
Q psy11834 186 IEVVEMGLEEAREYL 200 (230)
Q Consensus 186 ~~v~wv~~eE~~~~~ 200 (230)
.++.|++++++.++.
T Consensus 98 ~~~~W~~~~el~~~~ 112 (137)
T cd03427 98 GILDWFDIDDLPLLP 112 (137)
T ss_pred ccceEEcHhhccccc
Confidence 789999999988653
No 49
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=99.64 E-value=3.7e-15 Score=122.75 Aligned_cols=121 Identities=16% Similarity=0.190 Sum_probs=82.3
Q ss_pred ecCeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEee-eeecCCCCC
Q psy11834 45 QHKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFC-AGIVDKNKS 123 (230)
Q Consensus 45 ~~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elP-gG~VE~GEs 123 (230)
.|.+|++++++ .++++||.| +-.... . .+..|++| ||++++||+
T Consensus 29 ~~~~v~v~i~~-~~~~iLl~k-------------R~~~~~-----------------~----~Pg~w~~~~gG~ie~GEt 73 (165)
T cd02885 29 LHRAFSVFLFN-SKGRLLLQR-------------RALSKY-----------------T----FPGLWTNTCCSHPLPGEG 73 (165)
T ss_pred ceeEEEEEEEc-CCCcEEEEe-------------ccCCCc-----------------c----CCCcccccccCCCCCCCC
Confidence 37888999888 478999988 322111 1 23557786 899999999
Q ss_pred HHHHHHHHHHhhhCCccCCCceEEEEEEE-c--C-CC-ccCeEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHHH
Q psy11834 124 LAEIAREEVLEECGYDVPVEKLEKIQTFR-S--G-VG-SAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEARE 198 (230)
Q Consensus 124 ~~eAA~REl~EETGl~v~~~~l~~l~~~~-~--~-~~-~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~ 198 (230)
+.+||+||++||||+.+....+. +..+. . . .+ ......++|.+..... ...+.+|+.++.|++++++.+
T Consensus 74 ~~eaa~REl~EEtGl~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~-----~~~~~~Ev~~~~w~~~~el~~ 147 (165)
T cd02885 74 VKDAAQRRLREELGITGDLLELV-LPRFRYRAPDDGGLVEHEIDHVFFARADVT-----LIPNPDEVSEYRWVSLEDLKE 147 (165)
T ss_pred HHHHHHHHHHHHhCCCccchhhc-cceEEEEEEcCCCceeeEEEEEEEEEeCCC-----CCCCccceeEEEEECHHHHHH
Confidence 99999999999999998433332 13221 1 1 11 1223456777764321 123567888999999999999
Q ss_pred HhhcCCCC
Q psy11834 199 YLAQDEVR 206 (230)
Q Consensus 199 ~~~~~~~~ 206 (230)
++..+.-.
T Consensus 148 ~~~~~~~~ 155 (165)
T cd02885 148 LVAAAPEA 155 (165)
T ss_pred HHHhCchh
Confidence 99998544
No 50
>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.64 E-value=2.7e-15 Score=116.61 Aligned_cols=91 Identities=21% Similarity=0.165 Sum_probs=60.8
Q ss_pred CcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEE-EEEcCCCc-cCeEEEEEEEEEcCcccccCCCCCCCce
Q psy11834 108 GVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQ-TFRSGVGS-AGDRQTLFFVEVTDDMKVNSGGGVDEEL 185 (230)
Q Consensus 108 ~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~-~~~~~~~~-s~~~~~~y~a~~~~~~~~~~~~~~~~E~ 185 (230)
+..|++|||++++||++.+||.||++||||+.+ .....+. ...+.... .....++|.+..... ....+.|.
T Consensus 28 ~g~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~e~ 100 (129)
T cd04699 28 PGKWELPGGKVEEGETFEEALKREVYEETGLTV--TPFLRYPSTVTHEDSGVYNVIYLVFVCEALSG-----AVKLSDEH 100 (129)
T ss_pred CCcCcCCccCccCCCCHHHHHHHHHHHhhCcEE--EeeeeeeEEEEEcCCCEEEEEEEEEEeeecCC-----cccCChhh
Confidence 567899999999999999999999999999988 4444432 22322221 222334445443211 11245677
Q ss_pred EEEEEEcHHHHHHHhhcCCC
Q psy11834 186 IEVVEMGLEEAREYLAQDEV 205 (230)
Q Consensus 186 ~~v~wv~~eE~~~~~~~~~~ 205 (230)
.++.|++++++..+...+..
T Consensus 101 ~~~~w~~~~el~~~~~~~~~ 120 (129)
T cd04699 101 EEYAWVTLEELAILKADILF 120 (129)
T ss_pred eEEEEecHHHhhhhhccccc
Confidence 88999999999766655544
No 51
>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.63 E-value=3.9e-15 Score=116.62 Aligned_cols=112 Identities=20% Similarity=0.219 Sum_probs=75.9
Q ss_pred cCeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCHH
Q psy11834 46 HKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLA 125 (230)
Q Consensus 46 ~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~ 125 (230)
..++++++++. ++++||++ + .. ...|.||||++++|||+.
T Consensus 7 ~~~~~~~v~~~-~~~vLL~~-------------r--~~------------------------~~~w~~PgG~v~~gEt~~ 46 (132)
T cd04677 7 LVGAGVILLNE-QGEVLLQK-------------R--SD------------------------TGDWGLPGGAMELGESLE 46 (132)
T ss_pred ccceEEEEEeC-CCCEEEEE-------------e--cC------------------------CCcEECCeeecCCCCCHH
Confidence 56777777773 67999987 3 21 134889999999999999
Q ss_pred HHHHHHHHhhhCCccCCCceEEEEEE-----Ec--CCCccCeEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHHH
Q psy11834 126 EIAREEVLEECGYDVPVEKLEKIQTF-----RS--GVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEARE 198 (230)
Q Consensus 126 eAA~REl~EETGl~v~~~~l~~l~~~-----~~--~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~ 198 (230)
+||.||++||||+.+ .....++.+ +. ..+.....+.+|++...... .....++|..++.|++++++.+
T Consensus 47 ~aa~REl~EE~Gi~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~~~W~~~~e~~~ 121 (132)
T cd04677 47 ETARRELKEETGLEV--EELELLGVYSGKEFYVKPNGDDEQYIVTLYYVTKVFGG---KLVPDGDETLELKFFSLDELPE 121 (132)
T ss_pred HHHHHHHHHHhCCee--eeeEEEEEecCCceeecCCCCcEEEEEEEEEEEeccCC---cccCCCCceeeEEEEChhHCcc
Confidence 999999999999998 555554432 22 11222234445555432111 1123567889999999999987
Q ss_pred Hhhc
Q psy11834 199 YLAQ 202 (230)
Q Consensus 199 ~~~~ 202 (230)
++..
T Consensus 122 ~~~~ 125 (132)
T cd04677 122 LINP 125 (132)
T ss_pred chhH
Confidence 7654
No 52
>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.63 E-value=4.2e-15 Score=117.86 Aligned_cols=109 Identities=20% Similarity=0.149 Sum_probs=71.0
Q ss_pred CeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCHHH
Q psy11834 47 KDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLAE 126 (230)
Q Consensus 47 ~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~e 126 (230)
++|.+++++ +++|||++ +.+. ..|+||||++|+||++.+
T Consensus 1 ~~~~~ii~~--~~~vLLv~-------------~~~~--------------------------~~w~lPgG~ve~gEt~~~ 39 (131)
T cd04686 1 KAVRAIILQ--GDKILLLY-------------TKRY--------------------------GDYKFPGGGVEKGEDHIE 39 (131)
T ss_pred CcEEEEEEE--CCEEEEEE-------------EcCC--------------------------CcEECccccCCCCCCHHH
Confidence 367778776 58999999 6542 148899999999999999
Q ss_pred HHHHHHHhhhCCccCCCceEEEEEE---EcC--CC--ccCeEEEEEEEEEcCcccccCCCCCCCc---eEEEEEEcHHHH
Q psy11834 127 IAREEVLEECGYDVPVEKLEKIQTF---RSG--VG--SAGDRQTLFFVEVTDDMKVNSGGGVDEE---LIEVVEMGLEEA 196 (230)
Q Consensus 127 AA~REl~EETGl~v~~~~l~~l~~~---~~~--~~--~s~~~~~~y~a~~~~~~~~~~~~~~~~E---~~~v~wv~~eE~ 196 (230)
||+||++||||+.+. .....++.+ +.. +. ......++|+|...... .....++.| .....|++++++
T Consensus 40 aa~REl~EEtGl~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~e~~~~~~~~W~~~~ea 116 (131)
T cd04686 40 GLIRELQEETGATNI-RVIEKFGTYTERRPWRKPDADIFHMISYYYLCEVDAEL--GAQQLEDYEAELGMKPIWINIHEA 116 (131)
T ss_pred HHHHHHHHHHCCccc-ccceEEEEEEeeccccCCCCceeEEEEEEEEEEEcCCc--CCcccchhhHhcCCCcEEecHHHH
Confidence 999999999999862 122233322 221 11 11234567777765321 111222222 246899999998
Q ss_pred HHH
Q psy11834 197 REY 199 (230)
Q Consensus 197 ~~~ 199 (230)
.+-
T Consensus 117 ~~~ 119 (131)
T cd04686 117 IEH 119 (131)
T ss_pred HHh
Confidence 863
No 53
>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.63 E-value=4.7e-15 Score=116.20 Aligned_cols=113 Identities=16% Similarity=0.076 Sum_probs=75.9
Q ss_pred CeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCHHH
Q psy11834 47 KDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLAE 126 (230)
Q Consensus 47 ~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~e 126 (230)
-++++++++. ++++||+| +... . ....|.+|||++++||++.+
T Consensus 3 ~~v~~ii~~~-~~~iLl~~-------------r~~~-~----------------------~~~~w~~PGG~ve~gEt~~~ 45 (129)
T cd04678 3 VGVGVFVLNP-KGKVLLGK-------------RKGS-H----------------------GAGTWALPGGHLEFGESFEE 45 (129)
T ss_pred eEEEEEEECC-CCeEEEEe-------------ccCC-C----------------------CCCeEECCcccccCCCCHHH
Confidence 4677888874 68999998 3321 1 24568899999999999999
Q ss_pred HHHHHHHhhhCCccCCCceEEEEEEEc--CCCccCeEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHHHH
Q psy11834 127 IAREEVLEECGYDVPVEKLEKIQTFRS--GVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREY 199 (230)
Q Consensus 127 AA~REl~EETGl~v~~~~l~~l~~~~~--~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~~ 199 (230)
||.||++||||+.+ ..+..++.+.. ..........+|.+....... .....+.+|..++.|++++++..+
T Consensus 46 Aa~REl~EE~Gl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~W~~~~~l~~~ 117 (129)
T cd04678 46 CAAREVLEETGLHI--ENVQFLTVTNDVFEEEGKHYVTIFVKAEVDDGEA-EPNKMEPEKCEGWEWFDWEELPSV 117 (129)
T ss_pred HHHHHHHHHhCCcc--cceEEEEEEeEEeCCCCcEEEEEEEEEEeCCCCc-ccCCCCCceeCceEEeCHHHCCCc
Confidence 99999999999998 56555543322 111222344455566543211 111114567778999999999875
No 54
>PRK10707 putative NUDIX hydrolase; Provisional
Probab=99.63 E-value=3.8e-15 Score=126.22 Aligned_cols=88 Identities=26% Similarity=0.222 Sum_probs=68.8
Q ss_pred cEEEeeeeecCCC-CCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceEE
Q psy11834 109 VTLEFCAGIVDKN-KSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIE 187 (230)
Q Consensus 109 ~~~elPgG~VE~G-Es~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~ 187 (230)
..|+||||++|++ |++++||+||++||||+.. ..+..++.+++.....+..++.|++.+.... ....+++|..+
T Consensus 60 G~~~~PGG~~e~~de~~~~tA~REl~EEtGl~~--~~~~~lg~l~~~~~~~~~~~~~~v~~~~~~~---~~~~d~~Ev~~ 134 (190)
T PRK10707 60 GQVAFPGGAVDPTDASLIATALREAQEEVAIPP--SAVEVIGVLPPVDSSTGYQVTPVVGIIPPDL---PYRANEDEVAA 134 (190)
T ss_pred CcEEcCCcccCCCcccHHHHHHHHHHHHHCCCc--cceEEEEEeeeeeccCCcEEEEEEEEECCCC---CCCCChhhhhe
Confidence 4679999999984 6899999999999999998 8999999877544455556666666654321 22346789999
Q ss_pred EEEEcHHHHHHHhh
Q psy11834 188 VVEMGLEEAREYLA 201 (230)
Q Consensus 188 v~wv~~eE~~~~~~ 201 (230)
+.|+|++++.++..
T Consensus 135 v~~vpl~e~~~~~~ 148 (190)
T PRK10707 135 VFEMPLAEALHLGR 148 (190)
T ss_pred EEEEeHHHHhCccc
Confidence 99999999988753
No 55
>PRK15472 nucleoside triphosphatase NudI; Provisional
Probab=99.63 E-value=3.3e-15 Score=119.38 Aligned_cols=90 Identities=16% Similarity=0.187 Sum_probs=55.3
Q ss_pred CcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEE---E---EEcCCCccCeEEEEEEEEEcCcccccCCCCC
Q psy11834 108 GVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQ---T---FRSGVGSAGDRQTLFFVEVTDDMKVNSGGGV 181 (230)
Q Consensus 108 ~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~---~---~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~ 181 (230)
+..|++|||++++|||+.+||.||++||||+.+....+.... . .....+......++|++...... +.....
T Consensus 30 ~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 107 (141)
T PRK15472 30 PGQWALSGGGVEPGERIEEALRREIREELGEQLLLTEITPWTFRDDIRTKTYADGRKEEIYMIYLIFDCVSA--NRDVKI 107 (141)
T ss_pred CCceeCCcccCCCCCCHHHHHHHHHHHHHCCceeeeeeccccccccceeEEecCCCceeEEEEEEEEEeecC--CCcccC
Confidence 467999999999999999999999999999987333222110 0 01111222233333322211010 111123
Q ss_pred CCceEEEEEEcHHHHHHH
Q psy11834 182 DEELIEVVEMGLEEAREY 199 (230)
Q Consensus 182 ~~E~~~v~wv~~eE~~~~ 199 (230)
.+|+.++.|++++++.++
T Consensus 108 ~~E~~~~~w~~~~el~~l 125 (141)
T PRK15472 108 NEEFQDYAWVKPEDLVHY 125 (141)
T ss_pred ChhhheEEEccHHHhccc
Confidence 468889999999999876
No 56
>PLN02325 nudix hydrolase
Probab=99.63 E-value=6.5e-15 Score=119.15 Aligned_cols=89 Identities=19% Similarity=0.128 Sum_probs=58.5
Q ss_pred CcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEE---EcCCCccCeEEE-EEEEEEcCcccccCCCCCCC
Q psy11834 108 GVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTF---RSGVGSAGDRQT-LFFVEVTDDMKVNSGGGVDE 183 (230)
Q Consensus 108 ~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~---~~~~~~s~~~~~-~y~a~~~~~~~~~~~~~~~~ 183 (230)
...|.+|||+++.||++.+||.||++||||+.+ ..+..++.+ +.......+.+. +|.+...+... .....+.+
T Consensus 33 ~g~W~lPGG~ve~gEs~~~aa~REv~EEtGl~v--~~~~~l~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~-~~~~~e~~ 109 (144)
T PLN02325 33 DSTFALPGGHLEFGESFEECAAREVKEETGLEI--EKIELLTVTNNVFLEEPKPSHYVTVFMRAVLADPSQ-VPQNLEPE 109 (144)
T ss_pred CCeEECCceeCCCCCCHHHHHHHHHHHHHCCCC--cceEEEEEecceeecCCCCcEEEEEEEEEEECCCCC-CCCcCCch
Confidence 357999999999999999999999999999999 555544432 222222233344 44455432211 11122445
Q ss_pred ceEEEEEEcHHHHHHH
Q psy11834 184 ELIEVVEMGLEEAREY 199 (230)
Q Consensus 184 E~~~v~wv~~eE~~~~ 199 (230)
+..++.|++++++...
T Consensus 110 e~~~~~W~~~d~Lp~~ 125 (144)
T PLN02325 110 KCYGWDWYEWDNLPEP 125 (144)
T ss_pred hcCceEEEChHHCChh
Confidence 5678999999998864
No 57
>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.62 E-value=7.5e-15 Score=113.08 Aligned_cols=84 Identities=20% Similarity=0.290 Sum_probs=61.7
Q ss_pred cEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCC---ccCeEEEEEEEEEcCcccccCCCCCCCce
Q psy11834 109 VTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVG---SAGDRQTLFFVEVTDDMKVNSGGGVDEEL 185 (230)
Q Consensus 109 ~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~---~s~~~~~~y~a~~~~~~~~~~~~~~~~E~ 185 (230)
..|.+|||++++||++.+||.||++||||+.+....+..++.+..... ......++|++.... ......|+
T Consensus 23 ~~w~~PgG~ve~~Es~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~------~~~~~~e~ 96 (118)
T cd04690 23 DVFYLPGGKIEAGETPLQALIRELSEELGLDLDPDSLEYLGTFRAPAANEPGVDVRATVYVAELTG------EPVPAAEI 96 (118)
T ss_pred CcEECCCCccCCCCCHHHHHHHHHHHHHCCccChhheEEEEEEecccccCCCcEEEEEEEEEcccC------CcCCCchh
Confidence 358899999999999999999999999999883323888877654321 123466777777542 11234678
Q ss_pred EEEEEEcHHHHHH
Q psy11834 186 IEVVEMGLEEARE 198 (230)
Q Consensus 186 ~~v~wv~~eE~~~ 198 (230)
.++.|++++++..
T Consensus 97 ~~~~W~~~~e~~~ 109 (118)
T cd04690 97 EEIRWVDYDDPAD 109 (118)
T ss_pred hccEEecHHHccc
Confidence 8899999999743
No 58
>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.62 E-value=6.7e-15 Score=115.04 Aligned_cols=89 Identities=17% Similarity=0.115 Sum_probs=63.1
Q ss_pred cEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEE---EcCCCc-cCeEEEEEEEEEcCcccccC---CCCC
Q psy11834 109 VTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTF---RSGVGS-AGDRQTLFFVEVTDDMKVNS---GGGV 181 (230)
Q Consensus 109 ~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~---~~~~~~-s~~~~~~y~a~~~~~~~~~~---~~~~ 181 (230)
..|++|||++++||++.+||.||+.||||+.+ .....++.+ +...+. .+...++|.+...+...... ...+
T Consensus 23 ~~w~lPgG~ve~gEs~~~aa~RE~~EEtGl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 100 (126)
T cd04688 23 TFYRPPGGGIEFGESSEEALIREFKEELGLKI--EITRLLGVVENIFTYNGKPGHEIEFYYLVTLLDESLYQQDIEILEE 100 (126)
T ss_pred CeEECCCccccCCCCHHHHHHHHHHHHhCCce--ecceeeEEEEEeeccCCcccEEEEEEEEEEeCCCcccccccceecc
Confidence 46899999999999999999999999999988 555544432 222222 34456788888754322110 0125
Q ss_pred CCceEEEEEEcHHHHHHH
Q psy11834 182 DEELIEVVEMGLEEAREY 199 (230)
Q Consensus 182 ~~E~~~v~wv~~eE~~~~ 199 (230)
+.|..++.|++++++..+
T Consensus 101 ~~e~~~~~W~~~~~l~~~ 118 (126)
T cd04688 101 EGEKIVFRWIPIDELKEI 118 (126)
T ss_pred CCCEEEEEEeeHHHcccC
Confidence 678999999999998843
No 59
>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici
Probab=99.62 E-value=6.9e-15 Score=116.11 Aligned_cols=81 Identities=20% Similarity=0.057 Sum_probs=59.5
Q ss_pred CcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceEE
Q psy11834 108 GVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIE 187 (230)
Q Consensus 108 ~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~ 187 (230)
...|++|||++|+||++.+||+||++||||+++ .....++ .+..+. .....++|++...... .....|..+
T Consensus 37 ~g~w~lPgG~ve~gE~~~~a~~REl~EEtGl~~--~~~~~~~-~~~~~~-~~~~~~~f~~~~~~~~-----~~~~~e~~~ 107 (130)
T cd04511 37 HGFWTLPAGFMENGETTEQGALRETWEEAGARV--EIDGLYA-VYSVPH-ISQVYMFYRARLLDLD-----FAPGPESLE 107 (130)
T ss_pred CCeEECCcccccCCCCHHHHHHHHHHHHhCCEE--EeeeEEE-EEecCC-ceEEEEEEEEEEcCCc-----ccCCcchhc
Confidence 457999999999999999999999999999988 4444333 333333 2346677888865321 113456788
Q ss_pred EEEEcHHHHH
Q psy11834 188 VVEMGLEEAR 197 (230)
Q Consensus 188 v~wv~~eE~~ 197 (230)
+.|++++++.
T Consensus 108 ~~~~~~~~l~ 117 (130)
T cd04511 108 VRLFTEEEIP 117 (130)
T ss_pred eEEECHHHCC
Confidence 9999999986
No 60
>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.61 E-value=1.5e-14 Score=111.20 Aligned_cols=84 Identities=18% Similarity=0.243 Sum_probs=64.3
Q ss_pred cEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceEEE
Q psy11834 109 VTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEV 188 (230)
Q Consensus 109 ~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v 188 (230)
..|++|||++++||++.+||.||++||||+.+ ..+..++.+... ....++|++.+... .......|..++
T Consensus 21 ~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~--~~~~~~~~~~~~----~~~~~~f~~~~~~~----~~~~~~~e~~~~ 90 (112)
T cd04667 21 SRWALPGGKIEPGETPLQAARRELQEETGLQG--LDLLYLFHVDGG----STRHHVFVASVPPS----AQPKPSNEIADC 90 (112)
T ss_pred CcEeCCCCcCCCCCCHHHHHHHHHHHHhCCcc--cceEEEEEEeCC----CEEEEEEEEEcCCc----CCCCCchheeEE
Confidence 35889999999999999999999999999988 777777665432 34557787775422 111245788999
Q ss_pred EEEcHHHHHHHhhc
Q psy11834 189 VEMGLEEAREYLAQ 202 (230)
Q Consensus 189 ~wv~~eE~~~~~~~ 202 (230)
.|++++++.++...
T Consensus 91 ~W~~~~el~~~~~~ 104 (112)
T cd04667 91 RWLSLDALGDLNAS 104 (112)
T ss_pred EEecHHHhhhcccc
Confidence 99999999886543
No 61
>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.60 E-value=1.1e-14 Score=115.11 Aligned_cols=88 Identities=19% Similarity=0.088 Sum_probs=61.6
Q ss_pred cEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceE---EEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCce
Q psy11834 109 VTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLE---KIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEEL 185 (230)
Q Consensus 109 ~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~---~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~ 185 (230)
..|.+|||++++|||+.+||.||++||||+++ ..+. .+..++...........+|++....... ...++|.
T Consensus 27 g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~--~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~----~~~~~E~ 100 (131)
T cd04695 27 GFWCHVAGGVEAGETAWQAALRELKEETGISL--PELYNADYLEQFYEANDNRILMAPVFVGFVPPHQE----VVLNHEH 100 (131)
T ss_pred CcEECCcccccCCCCHHHHHHHHHHHHhCCCc--cccccccceeeEeecCCceEEEEEEEEEEecCCCc----cccCchh
Confidence 45789999999999999999999999999988 4442 2233444333223345567776542211 1124688
Q ss_pred EEEEEEcHHHHHHHhhc
Q psy11834 186 IEVVEMGLEEAREYLAQ 202 (230)
Q Consensus 186 ~~v~wv~~eE~~~~~~~ 202 (230)
.++.|++++++.+++..
T Consensus 101 ~~~~W~~~~e~~~~~~~ 117 (131)
T cd04695 101 TEYRWCSFAEALELAPF 117 (131)
T ss_pred cccEecCHHHHHHhcCC
Confidence 89999999999988653
No 62
>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.60 E-value=1.4e-14 Score=113.14 Aligned_cols=88 Identities=20% Similarity=0.098 Sum_probs=58.0
Q ss_pred cEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEc---CCC-cc-CeEEEEEEEEEcCcccccCCCCCCC
Q psy11834 109 VTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRS---GVG-SA-GDRQTLFFVEVTDDMKVNSGGGVDE 183 (230)
Q Consensus 109 ~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~---~~~-~s-~~~~~~y~a~~~~~~~~~~~~~~~~ 183 (230)
..|++|||++++|||+.+||+||++||||+.+ .....++.+.. ... .. +....+|++..... ......
T Consensus 24 ~~w~~PGG~ve~gEs~~~aa~REl~EEtG~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~-----~~~~~~ 96 (123)
T cd04672 24 GLWSLPGGWADVGLSPAENVVKEVKEETGLDV--KVRKLAAVDDRNKHHPPPQPYQVYKLFFLCEILGG-----EFKPNI 96 (123)
T ss_pred CcEeCCccccCCCCCHHHHHHHHHHHHhCCee--eEeEEEEEeccccccCCCCceEEEEEEEEEEecCC-----cccCCC
Confidence 35889999999999999999999999999988 33333332221 111 11 12234555654321 111236
Q ss_pred ceEEEEEEcHHHHHHHhhcC
Q psy11834 184 ELIEVVEMGLEEAREYLAQD 203 (230)
Q Consensus 184 E~~~v~wv~~eE~~~~~~~~ 203 (230)
|+.++.|++++++..+..-.
T Consensus 97 E~~~~~W~~~~el~~l~~~~ 116 (123)
T cd04672 97 ETSEVGFFALDDLPPLSEKR 116 (123)
T ss_pred ceeeeEEECHHHCcccccCC
Confidence 78899999999998776443
No 63
>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.57 E-value=4.2e-14 Score=111.23 Aligned_cols=82 Identities=21% Similarity=0.186 Sum_probs=66.3
Q ss_pred cEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceEEE
Q psy11834 109 VTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEV 188 (230)
Q Consensus 109 ~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v 188 (230)
..|++|||++++||++.+||+||++||||+.+ ..+..++.+....+.......+|++....... .....|+...
T Consensus 21 ~~w~lPgG~ve~gE~~~~aa~REl~EE~G~~~--~~~~~l~~~~~~~~~~~~~~~~y~a~~~~~~~----~~~~~E~~~~ 94 (118)
T cd04665 21 RGWEFPGGHVEPGETIEEAARREVWEETGAEL--GSLTLVGYYQVDLFESGFETLVYPAVSAQLEE----KASYLETDGP 94 (118)
T ss_pred CEEECCccccCCCCCHHHHHHHHHHHHHCCcc--CceEEEEEEEecCCCCcEEEEEEEEEEEeccc----ccccccccCc
Confidence 36999999999999999999999999999999 89999998877665566778889998754321 1245788889
Q ss_pred EEEcHHHH
Q psy11834 189 VEMGLEEA 196 (230)
Q Consensus 189 ~wv~~eE~ 196 (230)
.|++.+..
T Consensus 95 ~~~~~~~~ 102 (118)
T cd04665 95 VLFKNEPE 102 (118)
T ss_pred EEeccCCc
Confidence 99986554
No 64
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=99.56 E-value=4.5e-14 Score=115.83 Aligned_cols=118 Identities=18% Similarity=0.126 Sum_probs=81.8
Q ss_pred ecCeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEee-eeecCCCCC
Q psy11834 45 QHKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFC-AGIVDKNKS 123 (230)
Q Consensus 45 ~~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elP-gG~VE~GEs 123 (230)
.|.+++++++| .++++||.| |.... . ..+..|++| ||++++||
T Consensus 26 ~h~~v~v~v~~-~~g~vLl~k---------------R~~~k---------------~----~~PG~W~~~~gG~v~~GE- 69 (158)
T TIGR02150 26 LHRAFSVFLFN-EEGQLLLQR---------------RALSK---------------I----TWPGVWTNSCCSHPLPGE- 69 (158)
T ss_pred eEEEEEEEEEc-CCCeEEEEe---------------ccCCC---------------c----CCCCCccccccCCCCccc-
Confidence 48899999988 478999988 43320 0 134568887 89999999
Q ss_pred HHHHHHHHHHhhhCCccCCCceEEEEE--EEcC-CCccCeEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHHHHh
Q psy11834 124 LAEIAREEVLEECGYDVPVEKLEKIQT--FRSG-VGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYL 200 (230)
Q Consensus 124 ~~eAA~REl~EETGl~v~~~~l~~l~~--~~~~-~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~~~ 200 (230)
.+||.||++||||+.+....+..+.. +... +.......++|.+.... .....++|+.++.|++++++.+++
T Consensus 70 -~eaa~REl~EE~Gl~~~~~~l~~~~~~~~~~~~~~g~~~~~~~f~~~~~~-----~~~~~~~Ev~~~~W~~~~el~~~~ 143 (158)
T TIGR02150 70 -LEAAIRRLREELGIPADDVPLTVLPRFSYRARDAWGEHELCPVFFARAPV-----PLNPNPEEVAEYRWVSLEELKEIL 143 (158)
T ss_pred -HHHHHHHHHHHHCCCccccceEEcceEEEEEecCCCcEEEEEEEEEecCC-----cccCChhHeeeEEEeCHHHHHHHH
Confidence 49999999999999984433333332 2221 11123456777776432 122346699999999999999999
Q ss_pred hcCC
Q psy11834 201 AQDE 204 (230)
Q Consensus 201 ~~~~ 204 (230)
+...
T Consensus 144 ~~~~ 147 (158)
T TIGR02150 144 KAPW 147 (158)
T ss_pred hcCc
Confidence 9876
No 65
>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.56 E-value=3.6e-14 Score=111.89 Aligned_cols=86 Identities=22% Similarity=0.160 Sum_probs=58.2
Q ss_pred CCcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceE
Q psy11834 107 LGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELI 186 (230)
Q Consensus 107 ~~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~ 186 (230)
.+..|+||||++++||++.+||.||+.||||+.+ .....++.+.+.........++|.+.... +.....|..
T Consensus 28 ~~g~w~~PgG~ve~gE~~~~a~~RE~~EE~Gl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~e~~ 99 (135)
T PRK10546 28 QAGLWEFAGGKVEPGESQPQALIRELREELGIEA--TVGEYVASHQREVSGRRIHLHAWHVPDFH------GELQAHEHQ 99 (135)
T ss_pred CCCcEECCcccCCCCCCHHHHHHHHHHHHHCCcc--ccceeEEEEEEecCCcEEEEEEEEEEEec------Ccccccccc
Confidence 3567999999999999999999999999999998 43344444333222222234555554321 112234566
Q ss_pred EEEEEcHHHHHHHh
Q psy11834 187 EVVEMGLEEAREYL 200 (230)
Q Consensus 187 ~v~wv~~eE~~~~~ 200 (230)
++.|++++++..+.
T Consensus 100 ~~~W~~~~el~~~~ 113 (135)
T PRK10546 100 ALVWCTPEEALRYP 113 (135)
T ss_pred eeEEcCHHHcccCC
Confidence 88999999998763
No 66
>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.56 E-value=5.8e-14 Score=112.29 Aligned_cols=118 Identities=14% Similarity=0.014 Sum_probs=76.2
Q ss_pred CeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCHHH
Q psy11834 47 KDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLAE 126 (230)
Q Consensus 47 ~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~e 126 (230)
.++.+++++. ++++||+| +.+... ..+..|.+|||++++||++.+
T Consensus 1 ~~~~~~i~~~-~g~vLl~r-------------~~~~~~---------------------~~~~~w~~PgG~ve~gE~~~~ 45 (133)
T cd04685 1 RAARVVLLDP-DDRVLLLR-------------GDDPDS---------------------PGPDWWFTPGGGVEPGESPEQ 45 (133)
T ss_pred CeEEEEEEcC-CCeEEEEE-------------EeCCCC---------------------CCCCEEECCcCCCCCCCCHHH
Confidence 3678888884 78999998 443210 024579999999999999999
Q ss_pred HHHHHHHhhhCCcc-CCCceEEEEE--EEcCCCccCeEEEEEEEEEcCcccccCC--CCCCCceEEEEEEcHHHHHHH
Q psy11834 127 IAREEVLEECGYDV-PVEKLEKIQT--FRSGVGSAGDRQTLFFVEVTDDMKVNSG--GGVDEELIEVVEMGLEEAREY 199 (230)
Q Consensus 127 AA~REl~EETGl~v-~~~~l~~l~~--~~~~~~~s~~~~~~y~a~~~~~~~~~~~--~~~~~E~~~v~wv~~eE~~~~ 199 (230)
||.||+.||||+.+ ....+..... +...........++|++........... ..+..++.++.|++++++.+.
T Consensus 46 a~~Re~~EE~G~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~~~~W~~~~el~~~ 123 (133)
T cd04685 46 AARRELREETGITVADLGPPVWRRDAAFTFLGVDGRQEERFFLARTPRTEPSPAGWTALERRSILGWRWWTRAELAAT 123 (133)
T ss_pred HHHHHHHHHHCCccccccceEEEEEEEEEecCccceeeEEEEEEEcCCccccCCCCChhhhhhcccccCCCHHHHhhC
Confidence 99999999999988 3233322212 2222222234566777775432211111 112345668999999998764
No 67
>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.55 E-value=4.7e-14 Score=109.03 Aligned_cols=86 Identities=23% Similarity=0.163 Sum_probs=57.0
Q ss_pred cEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEE-------EEcCCCc-cCeEEEEEEEEEcCcccccCCCC
Q psy11834 109 VTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQT-------FRSGVGS-AGDRQTLFFVEVTDDMKVNSGGG 180 (230)
Q Consensus 109 ~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~-------~~~~~~~-s~~~~~~y~a~~~~~~~~~~~~~ 180 (230)
..|++|||++++||++.+||.||++||||+.+ .....++. +....+. ......+|++...... ...
T Consensus 25 ~~w~lPgG~v~~~E~~~~aa~REl~EE~Gl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 98 (129)
T cd04676 25 GLWALPGGAVEPGESPADTAVREVREETGLDV--EVTGLVGIYTGPVHVVTYPNGDVRQYLDITFRCRVVGGE----LRV 98 (129)
T ss_pred CcEECCeeccCCCCCHHHHHHHHHHHHhCcee--EeeEEEEEeecccceeecCCCCcEEEEEEEEEEEeeCCe----ecC
Confidence 45889999999999999999999999999988 44433221 1111111 1223345555543211 112
Q ss_pred CCCceEEEEEEcHHHHHHHh
Q psy11834 181 VDEELIEVVEMGLEEAREYL 200 (230)
Q Consensus 181 ~~~E~~~v~wv~~eE~~~~~ 200 (230)
...|..++.|++++++.++.
T Consensus 99 ~~~e~~~~~w~~~~el~~~~ 118 (129)
T cd04676 99 GDDESLDVAWFDPDGLPPLL 118 (129)
T ss_pred CCCceeEEEEEChhhCcccc
Confidence 45678899999999988764
No 68
>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.54 E-value=1.5e-13 Score=111.40 Aligned_cols=120 Identities=11% Similarity=0.109 Sum_probs=77.2
Q ss_pred eEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCHHHH
Q psy11834 48 DYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLAEI 127 (230)
Q Consensus 48 ~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~eA 127 (230)
+|+|++++ .++++||+| +.+... ..+..|++|||++++||++.+|
T Consensus 3 ~v~viv~~-~~~~vLl~r-------------r~~~~~---------------------~~~g~w~~PgG~v~~~E~~~~a 47 (143)
T cd04694 3 GVAVLLQS-SDQKLLLTR-------------RASSLR---------------------IFPNVWVPPGGHVELGENLLEA 47 (143)
T ss_pred EEEEEEEc-CCCEEEEEE-------------ECCCCC---------------------CCCCeEECcccccCCCCCHHHH
Confidence 56788787 478999999 543221 1356789999999999999999
Q ss_pred HHHHHHhhhCCccCCCc--eEEEEEE---EcC---CCcc-CeEEEEEEEEEcCcc--ccc-CCCCCCCceEEEEEEcHHH
Q psy11834 128 AREEVLEECGYDVPVEK--LEKIQTF---RSG---VGSA-GDRQTLFFVEVTDDM--KVN-SGGGVDEELIEVVEMGLEE 195 (230)
Q Consensus 128 A~REl~EETGl~v~~~~--l~~l~~~---~~~---~~~s-~~~~~~y~a~~~~~~--~~~-~~~~~~~E~~~v~wv~~eE 195 (230)
|+||++||||+.+.... +..++.+ ++. .+.. +..+.+|+....... ... .......|+.++.|+++++
T Consensus 48 a~RE~~EE~gi~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~Ev~~~~Wv~~~~ 127 (143)
T cd04694 48 GLRELNEETGLTLDPIDKSWQVLGLWESVYPPLLSRGLPKRHHIVVYILVKSSETHQQLQARLQPDPNEVSAAAWLDKSL 127 (143)
T ss_pred HHHHHHHHHCCCccccccceeEEeeeccccccccCCCcccceeEEEEEEEEeccccccccccccCChhhccceEeeCHHH
Confidence 99999999999883221 2333322 111 1111 234444444322110 000 1123457889999999999
Q ss_pred HHHHhhc
Q psy11834 196 AREYLAQ 202 (230)
Q Consensus 196 ~~~~~~~ 202 (230)
+.+++..
T Consensus 128 a~~~~~~ 134 (143)
T cd04694 128 AKAVVSA 134 (143)
T ss_pred HHHHHHh
Confidence 9999864
No 69
>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy
Probab=99.52 E-value=2.2e-13 Score=103.09 Aligned_cols=87 Identities=25% Similarity=0.227 Sum_probs=62.2
Q ss_pred CcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEE--EEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCce
Q psy11834 108 GVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQ--TFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEEL 185 (230)
Q Consensus 108 ~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~--~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~ 185 (230)
...|.+|||++++||++.++|.||++||+|+.+ ....... .+...........++|.+....... ....+.|.
T Consensus 24 ~~~~~~p~G~~~~~e~~~~~a~RE~~EE~Gl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~e~ 98 (123)
T cd02883 24 GGLWELPGGGVEPGETLEEAAIREVREETGLDV--DVLRLLGVYEVESPDEGEHAVVFVFLARLVGGEP---TLLPPDEI 98 (123)
T ss_pred CCeEeCCcccccCCCCHHHHHHHHHHHhhCccc--eeeeEEEEEEeeccCCCceEEEEEEEEEeCCCCc---CCCCCCcc
Confidence 357899999999999999999999999999988 4333333 3333323455667788887653321 11345677
Q ss_pred EEEEEEcHHHHHHH
Q psy11834 186 IEVVEMGLEEAREY 199 (230)
Q Consensus 186 ~~v~wv~~eE~~~~ 199 (230)
....|++++++.++
T Consensus 99 ~~~~w~~~~~l~~~ 112 (123)
T cd02883 99 SEVRWVTLDELPAL 112 (123)
T ss_pred ceEEEEcHHHCccc
Confidence 78899999998874
No 70
>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily. MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.
Probab=99.52 E-value=1.1e-13 Score=110.11 Aligned_cols=88 Identities=15% Similarity=0.232 Sum_probs=60.3
Q ss_pred cEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEE--EEEE-EcCC------CccCeEEEEEEEEEcCcccccCCC
Q psy11834 109 VTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEK--IQTF-RSGV------GSAGDRQTLFFVEVTDDMKVNSGG 179 (230)
Q Consensus 109 ~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~--l~~~-~~~~------~~s~~~~~~y~a~~~~~~~~~~~~ 179 (230)
..|+||||++++|||+.+||.||++||||+.+....+.. +..+ +..+ ...+..+++|.|...+...
T Consensus 26 g~W~fPgG~ve~gEt~~eaa~REl~EEtGl~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~----- 100 (132)
T cd04661 26 NHWILPQGKREEGETLRQTAERTLKELCGNNLKAKFYGNAPVGFYKYKYPKAVRNEGIVGAKVFFFKARYMSGQF----- 100 (132)
T ss_pred CeeECCcccccCCCCHHHHHHHHHHHhhCCCceEEEEEecCcEEEEEecCcccccccCcccEEEEEEEEEecCcc-----
Confidence 579999999999999999999999999999873221111 1111 1111 1122467788888653311
Q ss_pred CCCCceEEEEEEcHHHHHHHhh
Q psy11834 180 GVDEELIEVVEMGLEEAREYLA 201 (230)
Q Consensus 180 ~~~~E~~~v~wv~~eE~~~~~~ 201 (230)
....|+.++.|++++++..++.
T Consensus 101 ~~~~e~~~~~W~~~~el~~~l~ 122 (132)
T cd04661 101 ELSQNQVDFKWLAKEELQKYLN 122 (132)
T ss_pred ccCCCcceeEecCHHHHHhhcC
Confidence 1236788999999999998764
No 71
>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.
Probab=99.52 E-value=2.5e-13 Score=103.91 Aligned_cols=85 Identities=25% Similarity=0.198 Sum_probs=61.9
Q ss_pred CCcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceE
Q psy11834 107 LGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELI 186 (230)
Q Consensus 107 ~~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~ 186 (230)
.+..|+||||++++||++.+||.||+.||||+.+ .....++.+.+........+++|.+..... .....|..
T Consensus 26 ~~g~w~~p~G~~~~~e~~~~~a~Re~~EE~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~e~~ 97 (124)
T cd03425 26 LGGLWEFPGGKVEPGETPEQALVRELREELGIEV--EVGELLATVEHDYPDKRVTLHVFLVELWSG------EPQLLEHQ 97 (124)
T ss_pred CCCeEeCCCcccCCCCCHHHHHHHHHHHhhCcEE--eccceEEEEEeeCCCCeEEEEEEEEeeeCC------CcccccCc
Confidence 3568999999999999999999999999999988 555556555443333444566776764321 11244567
Q ss_pred EEEEEcHHHHHHH
Q psy11834 187 EVVEMGLEEAREY 199 (230)
Q Consensus 187 ~v~wv~~eE~~~~ 199 (230)
++.|++++++..+
T Consensus 98 ~~~W~~~~el~~~ 110 (124)
T cd03425 98 ELRWVPPEELDDL 110 (124)
T ss_pred eEEEeeHHHcccC
Confidence 8999999999764
No 72
>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.49 E-value=4.6e-13 Score=103.79 Aligned_cols=85 Identities=13% Similarity=0.068 Sum_probs=56.3
Q ss_pred CCcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceE
Q psy11834 107 LGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELI 186 (230)
Q Consensus 107 ~~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~ 186 (230)
.+..|+||||++++||++.+||.||++||||+.+ .....++.+.+........+++|.+..... .....|..
T Consensus 29 ~~g~w~~PgG~~~~gE~~~~a~~Re~~EE~gl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~e~~ 100 (129)
T PRK10776 29 MAGKWEFPGGKIEAGETPEQALIRELQEEVGITV--QHATLFEKLEYEFPDRHITLWFWLVESWEG------EPWGKEGQ 100 (129)
T ss_pred CCCeEECCceecCCCCCHHHHHHHHHHHHHCCce--ecceEEEEEEeeCCCcEEEEEEEEEEEECC------ccCCccCC
Confidence 3568999999999999999999999999999987 444444443332222222344454542211 11233556
Q ss_pred EEEEEcHHHHHHH
Q psy11834 187 EVVEMGLEEAREY 199 (230)
Q Consensus 187 ~v~wv~~eE~~~~ 199 (230)
++.|++++++..+
T Consensus 101 ~~~W~~~~~l~~~ 113 (129)
T PRK10776 101 PGRWVSQVALNAD 113 (129)
T ss_pred ccEEecHHHCccC
Confidence 7899999998764
No 73
>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]
Probab=99.48 E-value=1.7e-13 Score=111.34 Aligned_cols=89 Identities=26% Similarity=0.272 Sum_probs=59.0
Q ss_pred CcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCC--ccCeEEEEEEEEEcCcccccCCCCCCCce
Q psy11834 108 GVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVG--SAGDRQTLFFVEVTDDMKVNSGGGVDEEL 185 (230)
Q Consensus 108 ~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~--~s~~~~~~y~a~~~~~~~~~~~~~~~~E~ 185 (230)
...|.||||++|.||++++||+||++||||+++ ..+..++.+-.... .......+|++....+. ....+.++.
T Consensus 34 ~g~WalPGG~ve~GEt~eeaa~REl~EETgL~~--~~~~~~~v~~~~~rd~r~~~v~~~~~~~~~~g~---~~~~~~~d~ 108 (145)
T COG1051 34 AGYWALPGGFVEIGETLEEAARRELKEETGLRV--RVLELLAVFDDPGRDPRGHHVSFLFFAAEPEGE---LLAGDGDDA 108 (145)
T ss_pred CCcEeCCCccCCCCCCHHHHHHHHHHHHhCCcc--cceeEEEEecCCCCCCceeEEEEEEEEEecCCC---cccCChhhH
Confidence 456899999999999999999999999999997 55555544333211 12334445555532211 111133356
Q ss_pred EEEEEEcHHHHHHHhh
Q psy11834 186 IEVVEMGLEEAREYLA 201 (230)
Q Consensus 186 ~~v~wv~~eE~~~~~~ 201 (230)
-++.|++.+++..+..
T Consensus 109 ~~~~~~~~~~l~~~~~ 124 (145)
T COG1051 109 AEVGWFPLDELPELPL 124 (145)
T ss_pred hhcceecHhHcccccc
Confidence 6789999999987544
No 74
>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.48 E-value=7.1e-13 Score=105.57 Aligned_cols=60 Identities=17% Similarity=0.136 Sum_probs=45.4
Q ss_pred CcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcC
Q psy11834 108 GVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTD 171 (230)
Q Consensus 108 ~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~ 171 (230)
...|++|||+++.||++.+||+||++||||+.+. ..+..+..+..+. ...+++|++..+.
T Consensus 32 ~~~W~lPgG~ie~~E~~~~aA~REl~EEtGl~~~-~~~~~l~~~~~~~---~~~v~~fl~~~~~ 91 (126)
T cd04662 32 LGAWSIPKGEYTEGEDPLLAAKREFSEETGFCVD-GPFIDLGSLKQSG---GKVVHAWAVEADL 91 (126)
T ss_pred CCEEECCcccCCCCcCHHHHHHHHHHHHhCCcce-eeEEeEEEEECCC---CeEEEEEEEEecC
Confidence 4679999999999999999999999999999884 3444444444332 2366777777653
No 75
>TIGR00586 mutt mutator mutT protein. All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.48 E-value=5.9e-13 Score=103.53 Aligned_cols=85 Identities=13% Similarity=-0.094 Sum_probs=58.1
Q ss_pred CCcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceE
Q psy11834 107 LGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELI 186 (230)
Q Consensus 107 ~~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~ 186 (230)
.+..|+||||.+++||++.+||.||+.||||+.+ .....++.+.+..+......++|.+...+. .....+..
T Consensus 29 ~~g~w~~Pgg~ve~ge~~~~~~~RE~~EE~g~~~--~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 100 (128)
T TIGR00586 29 FAKLLEFPGGKEEGGETPEQAVVRELEEEIGIPQ--HFSEFEKLEYEFYPRHITLWFWLLERWEGG------PPGKEGQP 100 (128)
T ss_pred CCCeEECCCcccCCCCCHHHHHHHHHHHHHCCcc--eeeeEEEEEEEECCCcEEEEEEEEEEEcCC------CcCccccc
Confidence 4678999999999999999999999999999987 444444444443322233445555554321 11123445
Q ss_pred EEEEEcHHHHHHH
Q psy11834 187 EVVEMGLEEAREY 199 (230)
Q Consensus 187 ~v~wv~~eE~~~~ 199 (230)
++.|++++++..+
T Consensus 101 ~~~W~~~~~l~~~ 113 (128)
T TIGR00586 101 EEWWVLVGLLADD 113 (128)
T ss_pred ccEEeCHHHCCcc
Confidence 6899999988765
No 76
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=99.43 E-value=2.7e-12 Score=117.66 Aligned_cols=90 Identities=14% Similarity=0.138 Sum_probs=60.3
Q ss_pred CcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEE---EEEcCCCc---cCeEEEEEEEEEcCcccccCCCCC
Q psy11834 108 GVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQ---TFRSGVGS---AGDRQTLFFVEVTDDMKVNSGGGV 181 (230)
Q Consensus 108 ~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~---~~~~~~~~---s~~~~~~y~a~~~~~~~~~~~~~~ 181 (230)
...|.+|||++|+||++.+||+||++||||+++....+.... ..+..++. .....++|++...... . .....
T Consensus 227 ~g~W~lPGG~ve~gEt~~~Aa~REl~EETGl~v~~~~l~~~~~~~~~f~~p~r~~~~~~i~~~f~~~~~~~~-~-~~~~~ 304 (340)
T PRK05379 227 KGLWALPGGFLEQDETLLDACLRELREETGLKLPEPVLRGSIRDQQVFDHPGRSLRGRTITHAFLFEFPAGE-L-PRVKG 304 (340)
T ss_pred CCeEECCcccCCCCCCHHHHHHHHHHHHHCCcccccccceeeeeeEEEcCCCCCCCCcEEEEEEEEEecCCc-c-CccCC
Confidence 467899999999999999999999999999988444332211 12222321 2334566777654221 1 11123
Q ss_pred CCceEEEEEEcHHHHHHH
Q psy11834 182 DEELIEVVEMGLEEAREY 199 (230)
Q Consensus 182 ~~E~~~v~wv~~eE~~~~ 199 (230)
.+|..++.|++++++..+
T Consensus 305 ~de~~~~~W~~~~el~~~ 322 (340)
T PRK05379 305 GDDADKARWVPLAELLAM 322 (340)
T ss_pred CCceeeEEEEEHHHhhhh
Confidence 457889999999999865
No 77
>PLN02791 Nudix hydrolase homolog
Probab=99.40 E-value=2.1e-12 Score=128.52 Aligned_cols=135 Identities=19% Similarity=0.230 Sum_probs=96.0
Q ss_pred eecccccceeeEeecCeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEE
Q psy11834 32 KENQYCHPQFLITQHKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTL 111 (230)
Q Consensus 32 ~~~~~~~~~~~~~~~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (230)
.....||.+-. .|.++.|++++..++++||.| |.... ..|| ..|
T Consensus 20 ~~R~evH~~Gl--~HrAvhVwIfn~~~gelLLQk---------------RS~~K---------------~~~P----G~W 63 (770)
T PLN02791 20 KPRGEVHRDGD--YHRAVHVWIYSESTQELLLQR---------------RADCK---------------DSWP----GQW 63 (770)
T ss_pred ccHHhhccCCC--ceEEEEEEEEECCCCeEEEEE---------------ecCCC---------------CCCC----Ccc
Confidence 34455676654 489999999986568998877 44321 1233 345
Q ss_pred Ee-eeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEc----CCC--ccCeEEEEEEEEEcCcccccCCCCCCCc
Q psy11834 112 EF-CAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRS----GVG--SAGDRQTLFFVEVTDDMKVNSGGGVDEE 184 (230)
Q Consensus 112 el-PgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~----~~~--~s~~~~~~y~a~~~~~~~~~~~~~~~~E 184 (230)
.+ |||+++.||++.+||.||++||+|+.++...+..++.+.. ..+ ..++.+++|++.........+..++++|
T Consensus 64 DiS~gGHv~aGEs~~eAA~REL~EELGI~l~~~~l~~l~~~~~~~~~~~g~~~e~E~~~VYlv~~~~~~p~~~~~lq~eE 143 (770)
T PLN02791 64 DISSAGHISAGDTSLLSAQRELEEELGIILPKDAFELLFVFLQECVINDGKFINNEYNDVYLVTTLDPIPLEAFTLQESE 143 (770)
T ss_pred cCcCCCCCCCCCCHHHHHHHHHHHHhCCCCChhheeeeeeEEEEeeccCCCcceeeEEEEEEEEECCCCCcccCCCChhh
Confidence 55 7999999999999999999999999886666776665321 111 2346788898875433222223346789
Q ss_pred eEEEEEEcHHHHHHHhhc
Q psy11834 185 LIEVVEMGLEEAREYLAQ 202 (230)
Q Consensus 185 ~~~v~wv~~eE~~~~~~~ 202 (230)
+.++.|++++|+.+++..
T Consensus 144 V~~v~wvsl~El~~~l~~ 161 (770)
T PLN02791 144 VSAVKYMSIEEYKSALAK 161 (770)
T ss_pred hheeEEEcHHHHHHHHhc
Confidence 999999999999999986
No 78
>KOG3084|consensus
Probab=99.38 E-value=2.3e-13 Score=121.69 Aligned_cols=130 Identities=18% Similarity=0.154 Sum_probs=88.7
Q ss_pred eecCeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCC
Q psy11834 44 TQHKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKS 123 (230)
Q Consensus 44 ~~~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs 123 (230)
+..+.|.+++.++++.+.||.| |.|++. ..|.++||.+|+|||
T Consensus 185 r~dPvVIm~li~~d~~~~LL~R-------------~~r~~~------------------------gl~t~lAGFlEpGES 227 (345)
T KOG3084|consen 185 RTDPVVIMLLIDHDGKHALLGR-------------QKRYPP------------------------GLWTCLAGFLEPGES 227 (345)
T ss_pred CCCCeEEEEEEcCCCCEeeeec-------------ccCCCC------------------------chhhhhhccCCcccc
Confidence 4456667777888888999999 888765 378899999999999
Q ss_pred HHHHHHHHHHhhhCCccCCCceEEEEEEEcC-CCccCeEEEEEEEEEcCcccccCCCCCCC-ceEEEEEEcHHHHHHHhh
Q psy11834 124 LAEIAREEVLEECGYDVPVEKLEKIQTFRSG-VGSAGDRQTLFFVEVTDDMKVNSGGGVDE-ELIEVVEMGLEEAREYLA 201 (230)
Q Consensus 124 ~~eAA~REl~EETGl~v~~~~l~~l~~~~~~-~~~s~~~~~~y~a~~~~~~~~~~~~~~~~-E~~~v~wv~~eE~~~~~~ 201 (230)
++|||+||++||||++| +.+.+......+ .+.+-...++-++..+. + ...+.+ |+.++.|++.+|+.+.+.
T Consensus 228 ~eeav~REtwEEtGi~V--~~I~~~asQPWP~~p~SLMIgc~ala~~~~--~---I~vd~dlEleDaqwF~r~ev~~aL~ 300 (345)
T KOG3084|consen 228 IEEAVRRETWEETGIEV--EVISYVASQPWPLMPQSLMIGCLALAKLNG--K---ISVDKDLELEDAQWFDREEVKSALT 300 (345)
T ss_pred HHHHHHHHHHHHhCcee--eeEeeeecCCCCCCchHHHHHHHHHHhhCC--c---cccCcchhhhhcccccHHHHHHHHH
Confidence 99999999999999999 777654432221 22221111222333221 1 122334 888999999999999887
Q ss_pred -cCCC---------CChHHHHHHHHH
Q psy11834 202 -QDEV---------RSPSGFLFAMHW 217 (230)
Q Consensus 202 -~~~~---------~~~~~~~~a~~~ 217 (230)
.|.. -.|+++..|.++
T Consensus 301 ~kg~~Rv~~~~a~i~~P~~~aIA~qL 326 (345)
T KOG3084|consen 301 TKGLVRVQIEKALILIPPPFAIAHQL 326 (345)
T ss_pred hcCCccccccCcceecCChhHHHHHH
Confidence 3333 245566666543
No 79
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=99.34 E-value=3e-12 Score=113.68 Aligned_cols=86 Identities=19% Similarity=0.166 Sum_probs=66.7
Q ss_pred cEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceEEE
Q psy11834 109 VTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEV 188 (230)
Q Consensus 109 ~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v 188 (230)
..+.+-+|.||+|||+++|+.||++||+|+++ .++.++++..-....+ .+--|++++..++ -..++.|+.++
T Consensus 168 g~yS~LAGFVE~GETlE~AV~REv~EE~Gi~V--~~vrY~~SQPWPfP~S--LMigf~aey~sge----I~~d~~Eleda 239 (279)
T COG2816 168 GMYSLLAGFVEPGETLEQAVAREVFEEVGIKV--KNVRYVGSQPWPFPHS--LMLGFMAEYDSGE----ITPDEGELEDA 239 (279)
T ss_pred cceeeeeecccCCccHHHHHHHHHHHhhCeEE--eeeeEEeccCCCCchh--hhhhheeeecccc----ccCCcchhhhc
Confidence 46779999999999999999999999999999 9999988744332222 3345667765432 23467899999
Q ss_pred EEEcHHHHHHHhhc
Q psy11834 189 VEMGLEEAREYLAQ 202 (230)
Q Consensus 189 ~wv~~eE~~~~~~~ 202 (230)
.|++.+|++.++..
T Consensus 240 ~WFs~~evl~~L~~ 253 (279)
T COG2816 240 RWFSRDEVLPALPP 253 (279)
T ss_pred cccCHhHHhhhcCC
Confidence 99999998877765
No 80
>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are
Probab=99.34 E-value=1.6e-11 Score=97.78 Aligned_cols=89 Identities=13% Similarity=0.109 Sum_probs=57.2
Q ss_pred EEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccC---CCCCCCceE
Q psy11834 110 TLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNS---GGGVDEELI 186 (230)
Q Consensus 110 ~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~---~~~~~~E~~ 186 (230)
.|+||||++++||++.+||+||++||||+.+..... ....+.+.....+...+++++.+.....-.. ...++++.+
T Consensus 25 ~~~lPgG~ve~~E~~~~aa~Rel~EEtGl~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~E~~~i 103 (126)
T cd04663 25 GFQIVKGTVEPGETPEAAALRELQEESGLPSFLSDY-ILHVWERRFYQKRHFWHLTLCEVDQDLPDSWVHFVQDDGGHEF 103 (126)
T ss_pred cEECCCccCCCCCCHHHHHHHHHHHHHCCeeeeeee-cceeeeCCEeeccEEEEEEEEEecCCCcccccCcccCCCCceE
Confidence 379999999999999999999999999998711111 1111111111245566677776532211111 123577788
Q ss_pred EEEEEcHHHHHHH
Q psy11834 187 EVVEMGLEEAREY 199 (230)
Q Consensus 187 ~v~wv~~eE~~~~ 199 (230)
.+.|++++++...
T Consensus 104 ~~~Wv~l~~~~~~ 116 (126)
T cd04663 104 RFFWVDLASCLDE 116 (126)
T ss_pred EEEEEcccccccc
Confidence 8889999998543
No 81
>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.31 E-value=3.9e-11 Score=94.53 Aligned_cols=43 Identities=19% Similarity=0.313 Sum_probs=35.5
Q ss_pred CcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEE
Q psy11834 108 GVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQT 150 (230)
Q Consensus 108 ~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~ 150 (230)
...|+||||++++||++.+||.||+.||||+.+....+..+..
T Consensus 28 ~~~w~lPgG~ve~~E~~~~aa~REl~EE~g~~~~~~~l~~~~~ 70 (118)
T cd04674 28 RGKLALPGGFIELGETWQDAVARELLEETGVAVDPADIRLFDV 70 (118)
T ss_pred CCeEECCceecCCCCCHHHHHHHHHHHHHCCcccccEEEEEEE
Confidence 4568999999999999999999999999999984334444433
No 82
>PRK08999 hypothetical protein; Provisional
Probab=99.29 E-value=2.5e-11 Score=109.15 Aligned_cols=85 Identities=20% Similarity=0.172 Sum_probs=59.0
Q ss_pred CCcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceE
Q psy11834 107 LGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELI 186 (230)
Q Consensus 107 ~~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~ 186 (230)
.+..|+||||++++||++.+||.||++||||+.+ .....+....+.........++|.+..... .....|..
T Consensus 30 ~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~--~~~~~l~~~~h~~~~~~~~i~~y~~~~~~~------~~~~~e~~ 101 (312)
T PRK08999 30 QGGLWEFPGGKVEPGETVEQALARELQEELGIEV--TAARPLITVRHDYPDKRVRLDVRRVTAWQG------EPHGREGQ 101 (312)
T ss_pred CCCeEECCccCCCCCCCHHHHHHHHHHHHhCCce--ecceeEEEEEEEcCCCeEEEEEEEEEEecC------cccCccCC
Confidence 4578999999999999999999999999999988 444444443332222334566776653211 12234556
Q ss_pred EEEEEcHHHHHHH
Q psy11834 187 EVVEMGLEEAREY 199 (230)
Q Consensus 187 ~v~wv~~eE~~~~ 199 (230)
++.|++++++.++
T Consensus 102 ~~~Wv~~~el~~~ 114 (312)
T PRK08999 102 PLAWVAPDELAVY 114 (312)
T ss_pred ccEEecHHHcccC
Confidence 7899999988753
No 83
>PLN02709 nudix hydrolase
Probab=99.29 E-value=2.9e-11 Score=104.72 Aligned_cols=89 Identities=19% Similarity=0.095 Sum_probs=65.3
Q ss_pred CcEEEeeeeecCCC-CCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceE
Q psy11834 108 GVTLEFCAGIVDKN-KSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELI 186 (230)
Q Consensus 108 ~~~~elPgG~VE~G-Es~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~ 186 (230)
+..|.||||++|++ +++.+||+||++||+|+.. ..+..++.+......++..++-|++.+...... ....+++|.-
T Consensus 66 ~GqiafPGG~~e~~D~~~~~tAlRE~~EEiGl~~--~~v~vlg~L~~~~t~sg~~V~P~V~~~~~~~~~-~~~~np~EV~ 142 (222)
T PLN02709 66 PGEVALPGGKRDEEDKDDIATALREAREEIGLDP--SLVTIISVLEPFVNKKGMSVAPVIGFLHDKKAF-KPLPNPAEVE 142 (222)
T ss_pred CCCccCCCcccCCCCCCHHHHHHHHHHHHHCCCc--hheEEeeecCCeECCCCCEEEEEEEEecCCCCc-cccCChhhhh
Confidence 45678999999996 5799999999999999988 666666654332234566788888876532111 1123678999
Q ss_pred EEEEEcHHHHHHH
Q psy11834 187 EVVEMGLEEAREY 199 (230)
Q Consensus 187 ~v~wv~~eE~~~~ 199 (230)
++.|+|++.+.+-
T Consensus 143 ~vf~vPL~~ll~~ 155 (222)
T PLN02709 143 EIFDVPLEMFLKD 155 (222)
T ss_pred eeEEecHHHHhCC
Confidence 9999999988753
No 84
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=99.27 E-value=1.6e-10 Score=101.77 Aligned_cols=121 Identities=11% Similarity=0.170 Sum_probs=76.9
Q ss_pred eecCeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEee-eeecCCCC
Q psy11834 44 TQHKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFC-AGIVDKNK 122 (230)
Q Consensus 44 ~~~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elP-gG~VE~GE 122 (230)
..|.+++|+++|. ++++||.| |.... ..| +..|+.. +|++..||
T Consensus 54 l~Hra~~v~i~n~-~g~lLLQk---------------Rs~~K---------------~~~----Pg~Wd~s~~GHp~~ge 98 (247)
T PLN02552 54 LLHRAFSVFLFNS-KYELLLQQ---------------RAATK---------------VTF----PLVWTNTCCSHPLYGQ 98 (247)
T ss_pred ceEEEEEEEEEcC-CCeEEEEE---------------ecCCC---------------CCC----CcceecccCCcccccc
Confidence 3589999999984 78999977 54431 112 3345444 45554443
Q ss_pred C-----------------HHHHHHHHHHhhhCCccCC---CceEEEEEEEcCCCc-----------cCeEEEEEEEEEcC
Q psy11834 123 S-----------------LAEIAREEVLEECGYDVPV---EKLEKIQTFRSGVGS-----------AGDRQTLFFVEVTD 171 (230)
Q Consensus 123 s-----------------~~eAA~REl~EETGl~v~~---~~l~~l~~~~~~~~~-----------s~~~~~~y~a~~~~ 171 (230)
+ ..+||+|||.||||+.+.. ..+..++.+...... .++.+++|+.....
T Consensus 99 ~~~e~~~e~~~~~~~~~~~~eAA~REL~EElGI~~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~~~E~e~~~v~~~~~~~ 178 (247)
T PLN02552 99 DPNEVDRESELIDGNVLGVKNAAQRKLLHELGIPAEDVPVDQFTFLTRLHYKAADDVTHGPDGKWGEHELDYLLFIRPVR 178 (247)
T ss_pred ccccccccccccccchhhHHHHHHhHHHHHhCCCccccccccceeeeEEEEecccccccccCCCccceEEEEEEEEEecC
Confidence 2 6789999999999998632 236666543322211 13555665543221
Q ss_pred cccccCCCCCCCceEEEEEEcHHHHHHHhhc
Q psy11834 172 DMKVNSGGGVDEELIEVVEMGLEEAREYLAQ 202 (230)
Q Consensus 172 ~~~~~~~~~~~~E~~~v~wv~~eE~~~~~~~ 202 (230)
. .+...+++|..++.|++++++.+++..
T Consensus 179 ~---~~l~lq~eEV~~~~wvs~~el~~~~~~ 206 (247)
T PLN02552 179 D---VKVNPNPDEVADVKYVNREELKEMMRK 206 (247)
T ss_pred C---CcccCCHHHhheEEEEeHHHHHHHHhh
Confidence 1 122346789999999999999999873
No 85
>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]
Probab=99.18 E-value=4.5e-10 Score=86.28 Aligned_cols=96 Identities=26% Similarity=0.333 Sum_probs=59.9
Q ss_pred cEEEeeeeecCCCCCHHH-HHHHHHHhhhCCccCCCceEEEEEEEcCCCccC---eEEEEEEEEEcCcccccCCC-CC--
Q psy11834 109 VTLEFCAGIVDKNKSLAE-IAREEVLEECGYDVPVEKLEKIQTFRSGVGSAG---DRQTLFFVEVTDDMKVNSGG-GV-- 181 (230)
Q Consensus 109 ~~~elPgG~VE~GEs~~e-AA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~---~~~~~y~a~~~~~~~~~~~~-~~-- 181 (230)
..|++|||++|+||++.+ ||+||++||||+.+....+..++.+........ .....++............. ..
T Consensus 36 ~~~~~PgG~ve~~e~~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (161)
T COG0494 36 GLWELPGGKVEPGEELPEEAAARELEEETGLRVKDERLELLGEFPPSPGDGSSVGGREHRVFFVAEVDDSLAVAIEGLSA 115 (161)
T ss_pred CceecCCcccCCCCchHHHHHHHHHHHHhCCeeeeecceeeeeccCcccCcccccceEEEEEEeeeccccccccccccCC
Confidence 368999999999999988 999999999999993215666666555443321 12222222211111001001 11
Q ss_pred -CCceEEEEEEcHHHHHHHhhcCC
Q psy11834 182 -DEELIEVVEMGLEEAREYLAQDE 204 (230)
Q Consensus 182 -~~E~~~v~wv~~eE~~~~~~~~~ 204 (230)
..+...+.|++++++........
T Consensus 116 ~~~e~~~~~~~~~~~~~~~~~~~~ 139 (161)
T COG0494 116 PSEELEDLEWVPLDELAALVLAED 139 (161)
T ss_pred CcchhhceeeeeHHHcccccccch
Confidence 35788899999999887765543
No 86
>KOG2839|consensus
Probab=99.11 E-value=6.4e-10 Score=89.73 Aligned_cols=89 Identities=20% Similarity=0.199 Sum_probs=57.5
Q ss_pred EEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEE---cCCCccCeEEEEEEEEEcCcccccCCCCCCCceEE
Q psy11834 111 LEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFR---SGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIE 187 (230)
Q Consensus 111 ~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~---~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~ 187 (230)
|-+|+|++|++|+..+||.||..||.|+.. .....++.+. +....+....++|...+... ...-...+.+.-+
T Consensus 38 wi~PKGGwE~dE~~~eAA~REt~EEAGv~G--~l~~~~~g~~~~~~~~~~~~~k~~~~~l~v~e~--le~wp~~~~~~r~ 113 (145)
T KOG2839|consen 38 WIVPKGGWEPDESVEEAALRETWEEAGVKG--KLGRLLGGFEDFLSKKHRTKPKGVMYVLAVTEE--LEDWPESEHEFRE 113 (145)
T ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHhCcee--eeeccccchhhccChhhcccccceeehhhhhhh--cccChhhhcccce
Confidence 449999999999999999999999999987 3333344333 11111222334454443211 0101113455888
Q ss_pred EEEEcHHHHHHHhhcC
Q psy11834 188 VVEMGLEEAREYLAQD 203 (230)
Q Consensus 188 v~wv~~eE~~~~~~~~ 203 (230)
..|++++|+...+...
T Consensus 114 r~W~~ledA~~~~~~~ 129 (145)
T KOG2839|consen 114 REWLKLEDAIELCQHK 129 (145)
T ss_pred eEEeeHHHHHHHHhhH
Confidence 9999999999998833
No 87
>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P. Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.
Probab=98.96 E-value=5e-09 Score=88.68 Aligned_cols=32 Identities=19% Similarity=0.224 Sum_probs=29.0
Q ss_pred cEEEeeeeecCCCCCHHHHHHHHHHhhhCCcc
Q psy11834 109 VTLEFCAGIVDKNKSLAEIAREEVLEECGYDV 140 (230)
Q Consensus 109 ~~~elPgG~VE~GEs~~eAA~REl~EETGl~v 140 (230)
..|.||||++++||++.+||+|||.||||+.+
T Consensus 60 g~walPGG~v~~~E~~~~aa~Rel~EEt~l~l 91 (186)
T cd03670 60 GEWAIPGGMVDPGEKISATLKREFGEEALNSL 91 (186)
T ss_pred CcCcCCeeeccCCCCHHHHHHHHHHHHHcccc
Confidence 45889999999999999999999999997654
No 88
>KOG3069|consensus
Probab=98.78 E-value=2.5e-08 Score=86.40 Aligned_cols=93 Identities=20% Similarity=0.039 Sum_probs=60.2
Q ss_pred CcEEEeeeeecCC-CCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceE
Q psy11834 108 GVTLEFCAGIVDK-NKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELI 186 (230)
Q Consensus 108 ~~~~elPgG~VE~-GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~ 186 (230)
..-..||||+.|+ +++-.++|.||..||.|+.. ..+..++.+.+-....+..++-+++...............+|..
T Consensus 73 sGev~fPGG~~d~~D~s~~~tAlREt~EEIGl~~--~~~~~~g~l~~~~~r~~~~v~p~v~~l~~~~~l~~~~ln~gEv~ 150 (246)
T KOG3069|consen 73 SGEVCFPGGRRDPHDKSDIQTALRETEEEIGLDP--ELVDVLGALPPFVLRSGWSVFPVVGFLSDKKILPSLRLNSGEVE 150 (246)
T ss_pred CCceeCCCCcCCccccchHHHHHHHHHHHhCCCH--HHhhhhhhccceeeccCcccceeEEEEecccccccccCCchhee
Confidence 3445699999998 56788999999999999987 66555554222111122233444444332211133345788999
Q ss_pred EEEEEcHHHHHHHhhc
Q psy11834 187 EVVEMGLEEAREYLAQ 202 (230)
Q Consensus 187 ~v~wv~~eE~~~~~~~ 202 (230)
++.|+|++++..-..+
T Consensus 151 ~~F~VPL~~ll~~~~~ 166 (246)
T KOG3069|consen 151 SAFWVPLTDLLLPKHQ 166 (246)
T ss_pred eeeeeeHHHHhhhhcc
Confidence 9999999998765433
No 89
>PLN02839 nudix hydrolase
Probab=98.50 E-value=4.3e-06 Score=77.26 Aligned_cols=115 Identities=15% Similarity=0.139 Sum_probs=77.4
Q ss_pred ccCCCCCCcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccC-CCceEEEEEEEc----CCCccCeEEEEEEEEEcCcccc
Q psy11834 101 TKYPAELGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVP-VEKLEKIQTFRS----GVGSAGDRQTLFFVEVTDDMKV 175 (230)
Q Consensus 101 ~~~~~~~~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~-~~~l~~l~~~~~----~~~~s~~~~~~y~a~~~~~~~~ 175 (230)
+.||.. .=.+.||++..||++.+++.||..||.|+... ...+...+.+.. ..+...+..++|=.++..+ .+
T Consensus 230 ~t~PGm---LDn~VAGGi~aGesp~etliREa~EEAgLp~~l~~~~~~~G~VsY~~~~~~g~~~evly~YDLeLP~d-f~ 305 (372)
T PLN02839 230 STYPGM---LDHLVAGGLPHGISCGENLVKECEEEAGISKAIADRAIAVGAVSYMDIDQYCFKRDVLFCYDLELPQD-FV 305 (372)
T ss_pred CCCCCh---hhhccccCccCCCCHHHHHHHHHHHHcCCCHHHHhcceEeEEEEEEEEcCCccccCEEEEeeeecCCc-cc
Confidence 456643 33588999999999999999999999999651 124555554221 2233333444444443322 11
Q ss_pred cCCCCCCCceEEEEEEcHHHHHHHhhcCCCCChHHHHHHHHHHHHh
Q psy11834 176 NSGGGVDEELIEVVEMGLEEAREYLAQDEVRSPSGFLFAMHWFLAA 221 (230)
Q Consensus 176 ~~~~~~~~E~~~v~wv~~eE~~~~~~~~~~~~~~~~~~a~~~~~~~ 221 (230)
....++|..+...++++|+.+.+.+++...|...++.+.+++++
T Consensus 306 --P~~qDGEVe~F~Lm~v~EV~~~l~~~~~fKpn~aLViiDFLiRh 349 (372)
T PLN02839 306 --PKNQDGEVESFKLIPVAQVANVIRKTSFFKANCSLVIIDFLFRH 349 (372)
T ss_pred --cCCCccceeEEEEecHHHHHHHHHcCCCCCcccHHHHHHHHHHc
Confidence 13467899999999999999999998643356667777777765
No 90
>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]
Probab=98.46 E-value=4.3e-07 Score=75.66 Aligned_cols=145 Identities=14% Similarity=0.081 Sum_probs=98.9
Q ss_pred eecccccceeeEeecCeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEE
Q psy11834 32 KENQYCHPQFLITQHKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTL 111 (230)
Q Consensus 32 ~~~~~~~~~~~~~~~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (230)
.+-..||-.+-+.-|.+.++.++| .+|++|+.| |.... +. +| .-||
T Consensus 19 ~~k~~~Ht~d~~~LHrAFS~~lFn-e~g~LLltr---------------RA~~K------------~t---wP--~vWT- 64 (185)
T COG1443 19 AEKLAAHTGDTPRLHRAFSSFLFN-ERGQLLLTR---------------RALSK------------KT---WP--GVWT- 64 (185)
T ss_pred chhhhhhccccHHHHhhhheeEEC-CCCceeeeh---------------hhhhc------------cc---Cc--cccc-
Confidence 344567766766569999999999 599999988 43321 11 22 1233
Q ss_pred EeeeeecCCCCCHHHHHHHHHHhhhCCccCCCce-EEEEEE--Ec---CCCccCeEEEEEEEEEcCcccccCCCCCCCce
Q psy11834 112 EFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKL-EKIQTF--RS---GVGSAGDRQTLFFVEVTDDMKVNSGGGVDEEL 185 (230)
Q Consensus 112 elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l-~~l~~~--~~---~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~ 185 (230)
....|+=-+||+..+||+|.+.+|+|+...-.+. ..+..| .. +...-++.+.++++.... .....++|.
T Consensus 65 NSvCsHP~~~es~~~A~~rRl~~ELGie~~~~d~~~il~rf~YrA~~~~~~~E~Eic~V~~~~~~~-----~~~~npdEV 139 (185)
T COG1443 65 NSVCSHPLPGESNEDAARRRLAYELGIEPDQYDKLEILPRFRYRAADPDGIVENEICPVLAARLDS-----ALDPNPDEV 139 (185)
T ss_pred ccccCCCcCCCchHHHHHHHHHHHhCCCCcccCccccccceEEeccCCCCcceeeeeeEEEEeecC-----CCCCChHHh
Confidence 4566776789999999999999999998831122 222222 21 223456788899998653 223457899
Q ss_pred EEEEEEcHHHHHHHhhcCCCCChHHHHHHH
Q psy11834 186 IEVVEMGLEEAREYLAQDEVRSPSGFLFAM 215 (230)
Q Consensus 186 ~~v~wv~~eE~~~~~~~~~~~~~~~~~~a~ 215 (230)
.+.+|++++++..++....+.-.+.+...+
T Consensus 140 ~~~~wv~~e~l~~~~~~~~~~fsPW~~~~~ 169 (185)
T COG1443 140 MDYRWVSPEDLKEMVDATPWAFSPWFVIQA 169 (185)
T ss_pred hheeccCHHHHHHhhcCCceeeChHHHHHh
Confidence 999999999999999988776334433333
No 91
>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to
Probab=98.32 E-value=8.5e-06 Score=61.80 Aligned_cols=79 Identities=16% Similarity=0.069 Sum_probs=50.5
Q ss_pred CCcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceE
Q psy11834 107 LGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELI 186 (230)
Q Consensus 107 ~~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~ 186 (230)
.+..|+||+|.++.+|+..++..|++.+|.++.. .. ++.+.+.-+.-.-.+++|.+..... . .+..
T Consensus 27 ~~glwefP~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~H~fth~~~~~~~~~~~~~~~------~---~~~~ 92 (118)
T cd03431 27 LAGLWEFPSVEWEEEADGEEALLSALKKALRLSL--EP---LGTVKHTFTHFRLTLHVYLARLEGD------L---LAPD 92 (118)
T ss_pred CCcceeCCCccccCCcCHHHHHHHHHHHHhCccc--cc---ceeEEEecCCeEEEEEEEEEEEeCC------C---cCcc
Confidence 5789999999999999999999999999876411 11 2222222112223455666664311 0 1223
Q ss_pred EEEEEcHHHHHHH
Q psy11834 187 EVVEMGLEEAREY 199 (230)
Q Consensus 187 ~v~wv~~eE~~~~ 199 (230)
+..|++++++..+
T Consensus 93 ~~~W~~~eel~~~ 105 (118)
T cd03431 93 EGRWVPLEELDEY 105 (118)
T ss_pred ccEEccHHHHhhC
Confidence 5789999988864
No 92
>KOG0648|consensus
Probab=98.21 E-value=5e-07 Score=81.00 Aligned_cols=118 Identities=14% Similarity=0.066 Sum_probs=72.4
Q ss_pred cCeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCHH
Q psy11834 46 HKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSLA 125 (230)
Q Consensus 46 ~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~~ 125 (230)
.-+++..+.|. +++|++++ ...... .....|-+|+|.|+++|++.
T Consensus 115 ~vgvg~~V~n~-~~eVlVv~-------------e~d~~~---------------------~~~~~wK~ptG~v~~~e~i~ 159 (295)
T KOG0648|consen 115 RVGVGAFVLNK-KKEVLVVQ-------------EKDGAV---------------------KIRGGWKLPTGRVEEGEDIW 159 (295)
T ss_pred heeeeeeEecC-CceeEEEE-------------ecccce---------------------eecccccccceEecccccch
Confidence 35667777775 47888887 422222 14567889999999999999
Q ss_pred HHHHHHHHhhhCCccCCCceEEEEEEEcCCCcc-CeEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHHHHhh
Q psy11834 126 EIAREEVLEECGYDVPVEKLEKIQTFRSGVGSA-GDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLA 201 (230)
Q Consensus 126 eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s-~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~~~~ 201 (230)
++|.||++||||++..-..+..+...+.+. .. .....+|.|.... .. -.....+.|+....|+++++......
T Consensus 160 ~gavrEvkeetgid~ef~eVla~r~~H~~~-~~~~ksd~f~~c~L~p-~s-~~i~~~~~ei~~~~Wmp~~e~v~qp~ 233 (295)
T KOG0648|consen 160 HGAVREVKEETGIDTEFVEVLAFRRAHNAT-FGLIKSDMFFTCELRP-RS-LDITKCKREIEAAAWMPIEEYVSQPL 233 (295)
T ss_pred hhhhhhhHHHhCcchhhhhHHHHHhhhcch-hhcccccceeEEEeec-cc-cccchhHHHHHHHhcccHHHhhcccc
Confidence 999999999999866222222211222221 12 1233455555421 11 11123567777789999997665544
No 93
>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]
Probab=98.10 E-value=3.1e-05 Score=61.71 Aligned_cols=95 Identities=22% Similarity=0.105 Sum_probs=62.0
Q ss_pred CCcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcc---c---------
Q psy11834 107 LGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDM---K--------- 174 (230)
Q Consensus 107 ~~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~---~--------- 174 (230)
+...|.+|.|....||++..||+||.-||+|+.+. ..+..++.+.-+- +..+..|-++..-+. +
T Consensus 34 D~GAWSIPKGey~~gEdp~~AArREf~EE~Gi~vd-GP~~~lG~~kQ~G---GKvVta~~veae~Dva~~rSntFe~eWP 109 (161)
T COG4119 34 DDGAWSIPKGEYTGGEDPWLAARREFSEEIGICVD-GPRIDLGSLKQSG---GKVVTAFGVEAELDVADARSNTFELEWP 109 (161)
T ss_pred CCCcccccccccCCCcCHHHHHHHHhhhhhceeec-CchhhhhhhccCC---CcEEEEEeeeeeeehhhhhcceeeeecC
Confidence 35678899999999999999999999999999883 4555555544321 122333333211000 0
Q ss_pred ccCCCC-CCCceEEEEEEcHHHHHHHhhcCCC
Q psy11834 175 VNSGGG-VDEELIEVVEMGLEEAREYLAQDEV 205 (230)
Q Consensus 175 ~~~~~~-~~~E~~~v~wv~~eE~~~~~~~~~~ 205 (230)
..++.. .-.|.-.+-|+++++++..+.++.-
T Consensus 110 prSG~M~~FPEVDRagWF~l~eAr~Kil~gQR 141 (161)
T COG4119 110 PRSGKMRKFPEVDRAGWFPLAEARTKILKGQR 141 (161)
T ss_pred CCCCccccCcccccccceecHHHHhHHhhccc
Confidence 011111 3356667889999999998887743
No 94
>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A.
Probab=96.96 E-value=0.0012 Score=50.54 Aligned_cols=82 Identities=24% Similarity=0.183 Sum_probs=44.2
Q ss_pred CCcEEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceE
Q psy11834 107 LGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELI 186 (230)
Q Consensus 107 ~~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~ 186 (230)
.+..|+||.--.+. ++..+++.+.+.+..|+.+ .....++.+.+.-+.-...+++|.+.+..... . +..
T Consensus 22 l~GLwefP~~e~~~-~~~~~~l~~~~~~~~~~~~--~~~~~~~~v~H~fSH~~~~~~~~~~~~~~~~~-----~---~~~ 90 (114)
T PF14815_consen 22 LAGLWEFPLIESDE-EDDEEELEEWLEEQLGLSI--RSVEPLGTVKHVFSHRRWTIHVYEVEVSADPP-----A---EPE 90 (114)
T ss_dssp TTT-EE--EEE-SS-S-CHHHHHHHTCCSSS-EE--EE-S-SEEEEEE-SSEEEEEEEEEEEEE-SS------------T
T ss_pred hhcCcccCEeCccC-CCCHHHHHHHHHHHcCCCh--hhheecCcEEEEccceEEEEEEEEEEecCCCC-----C---CCC
Confidence 68899999988774 4446666667778888876 33334555554422333455677777653211 0 122
Q ss_pred EEEEEcHHHHHHH
Q psy11834 187 EVVEMGLEEAREY 199 (230)
Q Consensus 187 ~v~wv~~eE~~~~ 199 (230)
+..|++++++.++
T Consensus 91 ~~~W~~~~~l~~~ 103 (114)
T PF14815_consen 91 EGQWVSLEELDQY 103 (114)
T ss_dssp TEEEEEGGGGGGS
T ss_pred CcEEEEHHHHhhC
Confidence 4899999998753
No 95
>KOG0142|consensus
Probab=96.59 E-value=0.0081 Score=51.44 Aligned_cols=81 Identities=17% Similarity=0.259 Sum_probs=55.3
Q ss_pred CCCHHHHHHHHHHhhhCCcc---CCCceEEEEEEEc-CC--C--ccCeEEEEEEEEEcCcccccCCCCCCCceEEEEEEc
Q psy11834 121 NKSLAEIAREEVLEECGYDV---PVEKLEKIQTFRS-GV--G--SAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMG 192 (230)
Q Consensus 121 GEs~~eAA~REl~EETGl~v---~~~~l~~l~~~~~-~~--~--~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~ 192 (230)
+.....||+|-|.-|+|+.. ++.++.+++.+.. ++ + +-++..++.+.. .+.. ..++++|..++.|++
T Consensus 102 ~lGVr~AAqRkL~~ELGIp~e~v~pee~~~ltrihYkA~sdg~wGEhEiDYiL~~~--~~~~---~nPnpnEv~e~ryvs 176 (225)
T KOG0142|consen 102 ALGVRRAAQRKLKAELGIPLEEVPPEEFNFLTRIHYKAPSDGIWGEHEIDYILFLV--KDVT---LNPNPNEVSEIRYVS 176 (225)
T ss_pred hHHHHHHHHHHHHHhhCCCccccCHHHcccceeeeeecCCCCCcccceeeEEEEEe--ccCC---CCCChhhhhHhheec
Confidence 34688999999999999965 3456777776433 22 2 223344444444 2222 234578999999999
Q ss_pred HHHHHHHhhcCCCC
Q psy11834 193 LEEAREYLAQDEVR 206 (230)
Q Consensus 193 ~eE~~~~~~~~~~~ 206 (230)
.+|+..+++.....
T Consensus 177 ~eelkel~~~~~~~ 190 (225)
T KOG0142|consen 177 REELKELVAKASAG 190 (225)
T ss_pred HHHHHHHHhccccC
Confidence 99999999987665
No 96
>KOG4195|consensus
Probab=96.08 E-value=0.0053 Score=53.32 Aligned_cols=29 Identities=21% Similarity=0.235 Sum_probs=26.3
Q ss_pred cEEEeeeeecCCCCCHHHHHHHHHHhhhC
Q psy11834 109 VTLEFCAGIVDKNKSLAEIAREEVLEECG 137 (230)
Q Consensus 109 ~~~elPgG~VE~GEs~~eAA~REl~EETG 137 (230)
..|.+|||++|+||.+-.+.+||+.||.=
T Consensus 150 ~~WAiPGGmvdpGE~vs~tLkRef~eEa~ 178 (275)
T KOG4195|consen 150 GEWAIPGGMVDPGEKVSATLKREFGEEAM 178 (275)
T ss_pred CcccCCCCcCCchhhhhHHHHHHHHHHHH
Confidence 45779999999999999999999999963
No 97
>KOG2937|consensus
Probab=95.88 E-value=0.0015 Score=59.52 Aligned_cols=108 Identities=19% Similarity=0.171 Sum_probs=71.1
Q ss_pred ecCeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeeecCCCCCH
Q psy11834 45 QHKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDKNKSL 124 (230)
Q Consensus 45 ~~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~VE~GEs~ 124 (230)
+.+..+.++.|....++||++ +.. +-.|.+|-|++.++|+-
T Consensus 81 ~iPv~ga~ild~~~sr~llv~-------------g~q--------------------------a~sw~fprgK~~kdesd 121 (348)
T KOG2937|consen 81 RIPVRGAIILDEKRSRCLLVK-------------GWQ--------------------------ASSWSFPRGKISKDESD 121 (348)
T ss_pred CCCCchHhhhhhhhhhhheee-------------cee--------------------------cccccccCccccccchh
Confidence 345555666787778999998 543 23478999999999999
Q ss_pred HHHHHHHHHhhhCCccCCCceEEEEEEEcCCCccCeEEEEEEEE-EcCcccccCCCCCCCceEEEEEEcHHHH
Q psy11834 125 AEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVE-VTDDMKVNSGGGVDEELIEVVEMGLEEA 196 (230)
Q Consensus 125 ~eAA~REl~EETGl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~-~~~~~~~~~~~~~~~E~~~v~wv~~eE~ 196 (230)
.+||.||+.||||.++ .....-..+. .....++...+|+.. +..+. +.....-.|+....|..++++
T Consensus 122 ~~caiReV~eetgfD~--skql~~~e~I-e~nI~dq~~~~fIi~gvs~d~--~f~~~v~~eis~ihW~~l~~l 189 (348)
T KOG2937|consen 122 SDCAIREVTEETGFDY--SKQLQDNEGI-ETNIRDQLVRLFIINGVSEDT--NFNPRVRKEISKIHWHYLDHL 189 (348)
T ss_pred hhcchhcccchhhcCH--HHHhccccCc-ccchhhceeeeeeeccceeee--ecchhhhccccceeeeehhhh
Confidence 9999999999999998 5433222221 122344455555553 11111 112224567778899999888
No 98
>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]
Probab=92.80 E-value=0.85 Score=38.14 Aligned_cols=82 Identities=18% Similarity=0.204 Sum_probs=49.5
Q ss_pred eeecCCCC--CHHHH-----HHHHHHhhhCCccC-CCceEEEEEEEcCCCccCeEEE---EEEEEEcCcccccCCCCCCC
Q psy11834 115 AGIVDKNK--SLAEI-----AREEVLEECGYDVP-VEKLEKIQTFRSGVGSAGDRQT---LFFVEVTDDMKVNSGGGVDE 183 (230)
Q Consensus 115 gG~VE~GE--s~~eA-----A~REl~EETGl~v~-~~~l~~l~~~~~~~~~s~~~~~---~y~a~~~~~~~~~~~~~~~~ 183 (230)
||++..++ ++.++ +.|||.||.++.-. ...+.+++-.-.+.. .--++| +|...... ++-...+.
T Consensus 97 GGHmn~~~GA~s~~evLk~n~~REleEEv~vseqd~q~~e~lGlINdd~n-eVgkVHiG~lf~~~~k~----ndvevKEk 171 (203)
T COG4112 97 GGHMNEGDGATSREEVLKGNLERELEEEVDVSEQDLQELEFLGLINDDTN-EVGKVHIGALFLGRGKF----NDVEVKEK 171 (203)
T ss_pred ccccccCCCcccHHHHHccchHHHHHHHhCcCHHHhhhheeeeeecCCCc-ccceEEEEEEEEeeccc----cceeeeec
Confidence 78887643 33333 56999999998731 145666665444332 212333 44444321 22223577
Q ss_pred ceEEEEEEcHHHHHHHhh
Q psy11834 184 ELIEVVEMGLEEAREYLA 201 (230)
Q Consensus 184 E~~~v~wv~~eE~~~~~~ 201 (230)
+.+++.|+.++++.++..
T Consensus 172 d~~~~kwik~~ele~~y~ 189 (203)
T COG4112 172 DLFEWKWIKLEELEKFYG 189 (203)
T ss_pred ceeeeeeeeHHHHHHHhh
Confidence 899999999999998543
No 99
>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A ....
Probab=89.97 E-value=1.7 Score=37.03 Aligned_cols=61 Identities=13% Similarity=0.192 Sum_probs=34.5
Q ss_pred EEEeeeeecCCCCCHHHHHHHHHHhhhCCccCCC-ce---EEEEEEEcC-------------CCccCeEEEEEEEEEc
Q psy11834 110 TLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVE-KL---EKIQTFRSG-------------VGSAGDRQTLFFVEVT 170 (230)
Q Consensus 110 ~~elPgG~VE~GEs~~eAA~REl~EETGl~v~~~-~l---~~l~~~~~~-------------~~~s~~~~~~y~a~~~ 170 (230)
.+-||||.+.+||+..++.+|.|.+-.|..-... .+ ..++.++.. .....+...+|++...
T Consensus 69 ~fkLPGg~l~~gE~e~~gLkrkL~~~l~~~~~~~~~w~vge~l~~WwRp~Fe~~~YPYlP~HitkPKE~~klylV~Lp 146 (188)
T PF13869_consen 69 FFKLPGGRLRPGEDEIEGLKRKLTEKLSPEDGVDPDWEVGECLGTWWRPNFEPFMYPYLPPHITKPKECIKLYLVQLP 146 (188)
T ss_dssp EEE-SEEE--TT--HHHHHHHHHHHHHB-SSSS----EEEEEEEEEEESSSSS--BSS--TT-SS-SEEEEEEEEE--
T ss_pred cccCCccEeCCCCChhHHHHHHHHHHcCCCcCCCCCcEecCEEEEEeCCCCCCCCCCCCCcccCChhheeEEEEEecC
Confidence 6889999999999999999999999998753111 11 234443321 1234466778888764
No 100
>KOG1689|consensus
Probab=82.74 E-value=3.8 Score=34.56 Aligned_cols=30 Identities=13% Similarity=0.161 Sum_probs=27.4
Q ss_pred CcEEEeeeeecCCCCCHHHHHHHHHHhhhC
Q psy11834 108 GVTLEFCAGIVDKNKSLAEIAREEVLEECG 137 (230)
Q Consensus 108 ~~~~elPgG~VE~GEs~~eAA~REl~EETG 137 (230)
...+.+|||.+++||+-.+..+|=+-|-+|
T Consensus 93 ~tf~KLPGG~L~pGE~e~~Gl~r~l~~~Lg 122 (221)
T KOG1689|consen 93 NTFFKLPGGRLRPGEDEADGLKRLLTESLG 122 (221)
T ss_pred CEEEecCCCccCCCcchhHHHHHHHHHHhc
Confidence 345789999999999999999999999999
No 101
>KOG4313|consensus
Probab=80.41 E-value=6.8 Score=34.97 Aligned_cols=92 Identities=22% Similarity=0.222 Sum_probs=65.2
Q ss_pred EeeeeecCCCCCHHHHHHHHHHhhhCCccC-CCceEEEEE--EE---cCCCccCeEEEEEEEEEcCcccccCCCCCCCce
Q psy11834 112 EFCAGIVDKNKSLAEIAREEVLEECGYDVP-VEKLEKIQT--FR---SGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEEL 185 (230)
Q Consensus 112 elPgG~VE~GEs~~eAA~REl~EETGl~v~-~~~l~~l~~--~~---~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~ 185 (230)
...||++--|-...++|+.|..||+.+... ..++...|. |+ +..+..-+.+++|=..++.+ .++ ...++|.
T Consensus 168 N~vaGGl~~g~gI~eT~iKE~~EEAnl~~~~~~Nlv~~G~VSy~~~esr~~~~pe~qYVfDL~l~~d-~iP--~~nDGEV 244 (306)
T KOG4313|consen 168 NMVAGGLSVGFGIKETAIKEAAEEANLPSDLVKNLVSAGCVSYYKFESRQGLFPETQYVFDLELPLD-FIP--QNNDGEV 244 (306)
T ss_pred hhhccccccCchHHHHHHHHHHHhcCCchhhHhcceecceeEEEeeehhhccCccceEEEeccCchh-hcC--CCCCCce
Confidence 467899999999999999999999999772 334554443 33 22344445667776665432 222 2357788
Q ss_pred EEEEEEcHHHHHHHhhcCCCC
Q psy11834 186 IEVVEMGLEEAREYLAQDEVR 206 (230)
Q Consensus 186 ~~v~wv~~eE~~~~~~~~~~~ 206 (230)
...--+++.+..+.+...++.
T Consensus 245 ~~F~Lltl~~~v~~l~~k~FK 265 (306)
T KOG4313|consen 245 QAFELLTLKDCVERLFTKDFK 265 (306)
T ss_pred eeEeeecHHHHHHHHHhhccC
Confidence 888889999999998888775
No 102
>PRK10880 adenine DNA glycosylase; Provisional
Probab=70.73 E-value=11 Score=35.00 Aligned_cols=27 Identities=19% Similarity=0.126 Sum_probs=16.7
Q ss_pred CCcEEEeeeeecCCCCCHHHHHHHHHHhhhCCcc
Q psy11834 107 LGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDV 140 (230)
Q Consensus 107 ~~~~~elPgG~VE~GEs~~eAA~REl~EETGl~v 140 (230)
++..|+||.. +.. + ..++..|+.|+..
T Consensus 255 ~~gl~~fP~~--~~~----~-~~~~~~~~~~~~~ 281 (350)
T PRK10880 255 WGGLFCFPQF--ADE----E-ELRQWLAQRGIAA 281 (350)
T ss_pred hhccccCCCC--cch----h-hHHHHHHhcCCch
Confidence 5788999963 211 1 2455667888753
No 103
>PF03487 IL13: Interleukin-13; InterPro: IPR020470 Interleukin-13 (IL-13) is a pleiotropic cytokine which may be important in the regulation of the inflammatory and immune responses []. It inhibits inflammatory cytokine production and synergises with IL-2 in regulating interferon-gamma synthesis. The sequences of IL-4 and IL-13 are distantly related.; PDB: 3G6D_A 3L5W_J 3BPO_A 1GA3_A 1IK0_A 3L5X_A 3L5Y_A 1IJZ_A 3LB6_B.
Probab=57.58 E-value=9 Score=24.55 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=12.2
Q ss_pred EEeeeeecCCCCCHHHHHHHHHHhhh
Q psy11834 111 LEFCAGIVDKNKSLAEIAREEVLEEC 136 (230)
Q Consensus 111 ~elPgG~VE~GEs~~eAA~REl~EET 136 (230)
+.+-||..-+|--+...+.||+-||.
T Consensus 11 ltClggLasPgPvp~~~alkELIeEL 36 (43)
T PF03487_consen 11 LTCLGGLASPGPVPSSTALKELIEEL 36 (43)
T ss_dssp ------------S-HHHHHHHHHHHH
T ss_pred HHHhcccCCCCCCCchHHHHHHHHHH
Confidence 44678999999999999999999995
No 104
>KOG4548|consensus
Probab=51.77 E-value=86 Score=28.07 Aligned_cols=87 Identities=13% Similarity=0.081 Sum_probs=50.8
Q ss_pred cEEEeeeeec-CCCCCHHHHHHHHHHhhhCCccCCCceEE----EE--EEEcCCCcc-----CeEEEEEEEEEcCccccc
Q psy11834 109 VTLEFCAGIV-DKNKSLAEIAREEVLEECGYDVPVEKLEK----IQ--TFRSGVGSA-----GDRQTLFFVEVTDDMKVN 176 (230)
Q Consensus 109 ~~~elPgG~V-E~GEs~~eAA~REl~EETGl~v~~~~l~~----l~--~~~~~~~~s-----~~~~~~y~a~~~~~~~~~ 176 (230)
.+|-||-+.. +++++...+|.|+|.+-.|=.. ..+-. ++ .+-+..... ..+..+|.+......
T Consensus 152 s~w~fP~~~~s~~~~~lr~~ae~~Lk~~~ge~~--~t~fvgnaP~g~~~~q~pr~~~~e~~~~sk~ff~k~~lv~~~--- 226 (263)
T KOG4548|consen 152 SVWIFPNRQFSSSEKTLRGHAERDLKVLSGENK--STWFVGNAPFGHTPLQSPREMTTEEPVSSKVFFFKASLVANS--- 226 (263)
T ss_pred ceeeCCCcccCCccchHHHHHHHHHHHHhcchh--hhheeccCccccccccCcccccccccccceeEEeeeeecccc---
Confidence 4788999999 9999999999999999888544 22111 11 011111111 123444555433211
Q ss_pred CCCCCCCceEEEEEEcHHHHHHHhhc
Q psy11834 177 SGGGVDEELIEVVEMGLEEAREYLAQ 202 (230)
Q Consensus 177 ~~~~~~~E~~~v~wv~~eE~~~~~~~ 202 (230)
.....-.-+.+|++.+|+.+.+..
T Consensus 227 --~~kn~n~edfvWvTkdel~e~l~~ 250 (263)
T KOG4548|consen 227 --NQKNQNKEDFVWVTKDELGEKLPK 250 (263)
T ss_pred --chhcccccceEEechHHHhhhcch
Confidence 111122224899999999988653
No 105
>PRK00446 cyaY frataxin-like protein; Provisional
Probab=34.92 E-value=1.6e+02 Score=22.60 Aligned_cols=66 Identities=14% Similarity=0.174 Sum_probs=44.3
Q ss_pred cCeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeee-cC--CCC
Q psy11834 46 HKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGI-VD--KNK 122 (230)
Q Consensus 46 ~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~-VE--~GE 122 (230)
.++|.-|-+. ..+++++-| | + .+..||++- | +++..+..-+|. ++ .|+
T Consensus 34 ~~gVLti~f~-~~~~~VINk-------------Q--~-----------p~~QIWlas-~-sG~~hf~~~~~~W~~~r~g~ 84 (105)
T PRK00446 34 NGGVLTLTFE-NGSKIIINR-------------Q--E-----------PLHELWLAA-K-SGGFHFDYKDGEWICDRSGE 84 (105)
T ss_pred cCCEEEEEEC-CCCEEEEeC-------------C--C-----------chhheeEec-C-CCCccceecCCeEEECCCCc
Confidence 4556555554 467788877 4 2 235666665 4 455555555555 22 489
Q ss_pred CHHHHHHHHHHhhhCCcc
Q psy11834 123 SLAEIAREEVLEECGYDV 140 (230)
Q Consensus 123 s~~eAA~REl~EETGl~v 140 (230)
++.+...+|+.+-+|-.+
T Consensus 85 ~L~~~L~~~~~~~~g~~v 102 (105)
T PRK00446 85 EFWALLEEAATQQAGEPV 102 (105)
T ss_pred HHHHHHHHHHHHHcCCce
Confidence 999999999999999766
No 106
>PF14443 DBC1: DBC1
Probab=31.31 E-value=2.5e+02 Score=22.48 Aligned_cols=19 Identities=21% Similarity=0.167 Sum_probs=17.2
Q ss_pred CCHHHHHHHHHHhhhCCcc
Q psy11834 122 KSLAEIAREEVLEECGYDV 140 (230)
Q Consensus 122 Es~~eAA~REl~EETGl~v 140 (230)
..+..+|+|=+++-||++.
T Consensus 40 ~~LI~TAiR~~K~~tgiDL 58 (126)
T PF14443_consen 40 SVLIRTAIRTCKALTGIDL 58 (126)
T ss_pred HHHHHHHHHHHHHHhccch
Confidence 4588999999999999998
No 107
>COG4057 McrG Methyl coenzyme M reductase, gamma subunit [Coenzyme metabolism]
Probab=29.79 E-value=10 Score=32.82 Aligned_cols=81 Identities=20% Similarity=0.236 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhhh-----CCccCCCceEEEEEEEcCCCccCeEEEEEEEEEcCcccccCCCCCCCceEEEEEEcHHHHHH
Q psy11834 124 LAEIAREEVLEEC-----GYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEARE 198 (230)
Q Consensus 124 ~~eAA~REl~EET-----Gl~v~~~~l~~l~~~~~~~~~s~~~~~~y~a~~~~~~~~~~~~~~~~E~~~v~wv~~eE~~~ 198 (230)
..++.+||+-|-+ |.++ .-+++..+.|.+|...-.....|...+.+. ..+.+....+|++..-+++.+.+
T Consensus 64 ~ped~ire~Vep~~GAk~G~Rv--RYiQFaDSmY~APaqPY~Rar~ymwr~RGv---DtGtLSGRQiiE~RE~DlE~isK 138 (257)
T COG4057 64 EPEDPIREMVEPIQGAKAGDRV--RYIQFADSMYNAPAQPYDRARTYMWRFRGV---DTGTLSGRQIIEMRERDLEKISK 138 (257)
T ss_pred CccchHHHHhccCccccccceE--EEEEechhhhcCCCChhHHHHHHHhhhccc---ccCcccchhhhhHHHhhHHHHHH
Confidence 4567889998875 3333 334444455555554444444555555432 34555677888999999999999
Q ss_pred HhhcCCCCChH
Q psy11834 199 YLAQDEVRSPS 209 (230)
Q Consensus 199 ~~~~~~~~~~~ 209 (230)
.+.+-++-+|+
T Consensus 139 ~l~eTe~fDPA 149 (257)
T COG4057 139 ELLETEFFDPA 149 (257)
T ss_pred HHHHhhccChh
Confidence 88888876654
No 108
>PF01491 Frataxin_Cyay: Frataxin-like domain; InterPro: IPR002908 The eukaryotic proteins in this entry include frataxin, the protein that is mutated in Friedreich's ataxia [], and related sequences. Friedreich's ataxia is a progressive neurodegenerative disorder caused by loss of function mutations in the gene encoding frataxin (FRDA). Frataxin mRNA is predominantly expressed in tissues with a high metabolic rate (including liver, kidney, brown fat and heart). Mouse and yeast frataxin homologues contain a potential N-terminal mitochondrial targeting sequence, and human frataxin has been observed to co-localise with a mitochondrial protein. Furthermore, disruption of the yeast gene has been shown to result in mitochondrial dysfunction. Friedreich's ataxia is thus believed to be a mitochondrial disease caused by a mutation in the nuclear genome (specifically, expansion of an intronic GAA triplet repeat) [, , ]. The bacterial proteins in this entry are iron-sulphur cluster (FeS) metabolism CyaY proteins hmologous to eukaryotic frataxin. Partial Phylogenetic Profiling [] suggests that CyaY most likely functions as part of the ISC system for FeS cluster biosynthesis, and is supported by expermimental data in some species [, ]. ; PDB: 1EW4_A 2P1X_A 1SOY_A 2EFF_A 3T3T_B 3S4M_A 3T3K_A 3S5D_A 1LY7_A 3T3X_B ....
Probab=27.98 E-value=1.5e+02 Score=22.61 Aligned_cols=69 Identities=16% Similarity=0.213 Sum_probs=42.5
Q ss_pred eecCeEEEEEEEcCCCEEEEEEecCCcCCccccceecccceeccCCcccccCCccccccCCCCCCcEEEeeeee-c--CC
Q psy11834 44 TQHKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGI-V--DK 120 (230)
Q Consensus 44 ~~~~~v~vl~~~~~~~~vll~r~~~~~~~~~~~~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elPgG~-V--E~ 120 (230)
...++|.-+-+. ..+++++-| |- | +..||++. |.+++..+..-+|. + ..
T Consensus 35 e~~~gVLti~~~-~~~~~VINk-------------Q~--p-----------~~QIWlsS-pisG~~hf~~~~~~W~~~r~ 86 (109)
T PF01491_consen 35 ERSGGVLTIEFP-DGGQYVINK-------------QP--P-----------NRQIWLSS-PISGPFHFDYDDGKWIDTRD 86 (109)
T ss_dssp EEETTEEEEEET-TSEEEEEEE-------------EC--C-----------CTEEEEEE-TTTEEEEEEEESSSEEETTT
T ss_pred EccCCEEEEEEC-CCCEEEEeC-------------CC--H-----------HHHHHHhc-ccCCceEEEEcCCEEEECCC
Confidence 344556555553 466777777 31 1 23455552 32455555555555 2 24
Q ss_pred CCCHHHHHHHHHHhhhCCcc
Q psy11834 121 NKSLAEIAREEVLEECGYDV 140 (230)
Q Consensus 121 GEs~~eAA~REl~EETGl~v 140 (230)
|+++.+...||+.+.+|..+
T Consensus 87 g~~l~~~L~~el~~~~g~~v 106 (109)
T PF01491_consen 87 GEELFELLEEELSQQLGEPV 106 (109)
T ss_dssp TEBHHHHHHHHHHHHHTS--
T ss_pred CchHHHHHHHHHHHHhCCCe
Confidence 88999999999999999876
Done!