RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11834
(230 letters)
>3q91_A Uridine diphosphate glucose pyrophosphatase; structural genomics,
structural genomics consortium, SGC, NU MUTT-like,
hydrolase, magnesium binding; 2.70A {Homo sapiens}
Length = 218
Score = 116 bits (292), Expect = 1e-32
Identities = 58/160 (36%), Positives = 82/160 (51%), Gaps = 5/160 (3%)
Query: 68 QFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYPAELGVTLEFCAGIVDK-NKSLAE 126
QF V +V + + P GVT+E CAG+VD+ SL E
Sbjct: 56 QFRPA--VYAGEVERRFPGSLAAVDQDGPRELQPALPGSAGVTVELCAGLVDQPGLSLEE 113
Query: 127 IAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDE--E 184
+A +E EECGY + L ++ T+ SGVG G RQT+F+ EVTD + GGG+ E E
Sbjct: 114 VACKEAWEECGYHLAPSDLRRVATYWSGVGLTGSRQTMFYTEVTDAQRSGPGGGLVEEGE 173
Query: 185 LIEVVEMGLEEAREYLAQDEVRSPSGFLFAMHWFLAAKAG 224
LIEVV + LE A+ + ++ G +F + WFL+ A
Sbjct: 174 LIEVVHLPLEGAQAFADDPDIPKTLGVIFGVSWFLSQVAP 213
>3o6z_A GDP-mannose pyrophosphatase NUDK; nudix, hydrolase, biofilm; 2.05A
{Escherichia coli} PDB: 3o52_A* 1viu_A 3o69_A 3o61_A
Length = 191
Score = 83.8 bits (208), Expect = 2e-20
Identities = 32/99 (32%), Positives = 55/99 (55%), Gaps = 3/99 (3%)
Query: 108 GVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFV 167
G +E CAG++D ++ I +E +EE GY+V ++ K+ G + F
Sbjct: 78 GQLIESCAGLLDNDEPEVCIRKE-AIEETGYEV--GEVRKLFELYMSPGGVTELIHFFIA 134
Query: 168 EVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQDEVR 206
E +D+ + N+GGGV++E IEV+E+ +A E + E+R
Sbjct: 135 EYSDNQRANAGGGVEDEAIEVLELPFSQALEMIKTGEIR 173
>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix
fold, hydrolase; 1.90A {Escherichia coli} SCOP:
d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A
Length = 209
Score = 70.5 bits (173), Expect = 3e-15
Identities = 25/97 (25%), Positives = 51/97 (52%), Gaps = 3/97 (3%)
Query: 111 LEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVT 170
LE AG++++ +S+ ++AR E +EE G V++ + + +F + G +R ++ EV
Sbjct: 92 LEMVAGMIEEGESVEDVARREAIEEAGLI--VKRTKPVLSFLASPGGTSERSSIMVGEVD 149
Query: 171 DDMKVNSGGGVDE-ELIEVVEMGLEEAREYLAQDEVR 206
G DE E I V + E+A +++ + ++
Sbjct: 150 ATTASGIHGLADENEDIRVHVVSREQAYQWVEEGKID 186
>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose
pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo
sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A*
3l85_A*
Length = 212
Score = 65.6 bits (160), Expect = 3e-13
Identities = 23/107 (21%), Positives = 39/107 (36%), Gaps = 6/107 (5%)
Query: 103 YPAELGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQ 162
P G +EF AG++D ++ A E+ EE GY + E G +
Sbjct: 87 PPMG-GYCIEFPAGLIDDGETPEAAALRELEEETGYK--GDIAECSPAVCMDPGLSNCTI 143
Query: 163 TLFFVEVTDDMKVNSGGGV---DEELIEVVEMGLEEAREYLAQDEVR 206
+ V + D N+ D E +EV+ + + + L
Sbjct: 144 HIVTVTINGDDAENARPKPKPGDGEFVEVISLPKNDLLQRLDALVAE 190
>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD,
hydrol structural genomics, NPPSFA; HET: RBY; 1.66A
{Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A*
Length = 182
Score = 62.2 bits (152), Expect = 3e-12
Identities = 28/119 (23%), Positives = 44/119 (36%), Gaps = 8/119 (6%)
Query: 103 YPAELGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQ 162
+P LE AG VD+ ++ AR E+ EE G + E L + +F
Sbjct: 63 HPTG-KFLLEVPAGKVDEGETPEAAARRELREEVGAE--AETLIPLPSFHPQPSFTAVVF 119
Query: 163 TLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQDEV---RSPSGFLFAMHWF 218
F V + EL+E +E+ L E LA+ E+ + +A
Sbjct: 120 HPFL--ALKARVVTPPTLEEGELLESLELPLTEVYALLAKGEIQDASTALTLFYAEPHL 176
>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase;
2.00A {Deinococcus radiodurans}
Length = 145
Score = 57.1 bits (139), Expect = 1e-10
Identities = 25/104 (24%), Positives = 38/104 (36%), Gaps = 6/104 (5%)
Query: 103 YPAELGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQ 162
YP E AG V+K + L A E+LEE G + + F +G
Sbjct: 27 YPLR-ATITEIVAGGVEKGEDLGAAAARELLEEVGGA--ASEWVPLPGFYPQPSISGVVF 83
Query: 163 TLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQDEVR 206
+ + + + D E IE V + L E L E++
Sbjct: 84 YPL---LALGVTLGAAQLEDTETIERVVLPLAEVYRMLEAGEIQ 124
>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A
{Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A*
Length = 198
Score = 55.7 bits (135), Expect = 8e-10
Identities = 23/118 (19%), Positives = 40/118 (33%), Gaps = 9/118 (7%)
Query: 103 YPAELGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQ 162
E L F G++D +S+ E A E+ EE G+ L ++ +
Sbjct: 70 VGTE-SYELGFSKGLIDPGESVYEAANRELKEEVGFG--ANDLTFLKKLSMAPSYFSSKM 126
Query: 163 TLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQDEV---RSPSGFLFAMHW 217
+ + D+ S G + E + V L + L + R+ S W
Sbjct: 127 NIVVAQ---DLYPESLEGDEPEPLPQVRWPLAHMMDLLEDPDFNEARNVSALFLVREW 181
>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT
family, riken structural genomics/proteomics initiative,
RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP:
d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A
1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A
Length = 170
Score = 53.8 bits (130), Expect = 2e-09
Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 7/123 (5%)
Query: 103 YPAELGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQ 162
LE AG+++ + E AR E+ E+ G L + ++ G ++
Sbjct: 55 PAVG-LAPLEIPAGLIEPGEDPLEAARRELAEQTGL---SGDLTYLFSYFVSPGFTDEKT 110
Query: 163 TLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQDEVRSPSGFLFAMHWFLAAK 222
+F E ++K ++E IEVV M EEA E + EV + L + ++ A
Sbjct: 111 HVFLAE---NLKEVEAHPDEDEAIEVVWMRPEEALERHQRGEVEFSATGLVGVLYYHAFL 167
Query: 223 AGQ 225
G+
Sbjct: 168 RGR 170
>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI
ribose, RV1700, hydrolase; HET: APR; 2.00A
{Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A
1mqe_A* 1mqw_A* 1mr2_A*
Length = 207
Score = 48.1 bits (115), Expect = 4e-07
Identities = 16/106 (15%), Positives = 35/106 (33%), Gaps = 7/106 (6%)
Query: 103 YPAELGVTLEFCAGIVD-KNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDR 161
+ E AG++D + A E+ EE G + + + G + +
Sbjct: 65 HTYG-RRLWELPAGLLDVAGEPPHLTAARELREEVGLQA--STWQVLVDLDTAPGFSDES 121
Query: 162 QTLFFVEVTDDMKVNSGGGVDE-ELIEVVEMGLEEAREYLAQDEVR 206
++ T +V E + + + EA + + E+
Sbjct: 122 VRVYLA--TGLREVGRPEAHHEEADMTMGWYPIAEAARRVLRGEIV 165
>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure
initiative, midwest center for structural genomics,
MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP:
d.113.1.1
Length = 153
Score = 45.2 bits (107), Expect = 2e-06
Identities = 21/102 (20%), Positives = 39/102 (38%), Gaps = 5/102 (4%)
Query: 108 GVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFV 167
+ L AG ++ +S+ + EVLEE G+ E L I + ++ L F
Sbjct: 32 AIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPEVLTGIYHWTC---ASNGTTYLRFT 88
Query: 168 EVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQDEVRSPS 209
+ + +D ++ ++E R Q R+P
Sbjct: 89 FSGQVVSFDPDRKLDTGIVRAAWFSIDEIRA--KQAMHRTPL 128
>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER
HB8, hydrolase, riken structural genomics/proteomics
initia RSGI; 1.70A {Thermus thermophilus} SCOP:
d.113.1.1 PDB: 1vc8_A 1vc9_A*
Length = 126
Score = 43.8 bits (104), Expect = 4e-06
Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 7/91 (7%)
Query: 116 GIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKV 175
G + +SL E A EV EE G E L + R +R+ +F+ M+
Sbjct: 31 GHPEPGESLEEAAVREVWEETGVR--AEVLLPLYPTRYVNPKGVEREVHWFL-----MRG 83
Query: 176 NSGGGVDEELIEVVEMGLEEAREYLAQDEVR 206
++E + EEAR LA E
Sbjct: 84 EGAPRLEEGMTGAGWFSPEEARALLAFPEDL 114
>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP
binding, dephosphorylation; 2.50A {Escherichia coli}
PDB: 3dku_A
Length = 153
Score = 44.0 bits (104), Expect = 5e-06
Identities = 20/94 (21%), Positives = 38/94 (40%), Gaps = 7/94 (7%)
Query: 115 AGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMK 174
AG ++ +++L E A E+ EE G + ++ + + + R LF +E+
Sbjct: 35 AGHLEADETLVEAAARELWEETGISAQPQHFIRMHQWIAPDKTPFLR-FLFAIELEQICP 93
Query: 175 VNSGGGVDEELIEVVEMGLEEAREYLAQDEVRSP 208
D ++ + E E L +RSP
Sbjct: 94 TQPH---DSDIDCCRWVSAE---EILQASNLRSP 121
>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich,
structural genomics, BSGC structure funded by NIH; 1.39A
{Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A
1su2_A* 1sz3_A*
Length = 159
Score = 43.6 bits (103), Expect = 9e-06
Identities = 19/104 (18%), Positives = 31/104 (29%), Gaps = 3/104 (2%)
Query: 115 AGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMK 174
+G V+ ++ + A E EE G V K R G R
Sbjct: 49 SGAVEDGENPQDAAVREACEETGLRVRPVKFLGAYLGRFPDGVLILRHVWLAEPEPGQTL 108
Query: 175 VNSGGGVDEELIEVVEMGLEEAREYLAQDEVRSPSGFLFAMHWF 218
+E+ E + E+ + A ++R LF
Sbjct: 109 AP---AFTDEIAEASFVSREDFAQLYAAGQIRMYQTKLFYADAL 149
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.1 bits (103), Expect = 2e-05
Identities = 31/194 (15%), Positives = 58/194 (29%), Gaps = 33/194 (17%)
Query: 45 QHKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTKYP 104
H D+ ++ I+ F+ + K VQ + ++ E D +
Sbjct: 5 HHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSK-EEID-----HIIMSK 58
Query: 105 AELGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKL--EKIQTFRSGVGSAGDRQ 162
+ TL ++ K + + + EEVL Y + + E+ Q R
Sbjct: 59 DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI-NYKFLMSPIKTEQRQPSMMTRMYIEQRD 117
Query: 163 TLF-FVEVTDDMKVNSGGGVDEELIEVVEMGLEEAR--EY-------------LAQDEVR 206
L+ +V V+ + + L E R + +A D
Sbjct: 118 RLYNDNQVFAKYNVSR-----LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL 172
Query: 207 SPS---GFLFAMHW 217
S F + W
Sbjct: 173 SYKVQCKMDFKIFW 186
Score = 40.6 bits (94), Expect = 3e-04
Identities = 35/216 (16%), Positives = 74/216 (34%), Gaps = 67/216 (31%)
Query: 9 IIETQSSQFIQPYSVKFVQEAL---IKENQYCHPQFLITQHKD-----YYIVMNKITEAQ 60
I+ F+ + K VQ+ + + + H I KD +
Sbjct: 21 ILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDH----IIMSKDAVSGTLRLF-------W 69
Query: 61 IIETRSSQFIQPYSVKFVQVLLSV-Y---INSIPEEDRTGSIDVTKYPAELGVTLEFCAG 116
+ ++ + +Q KFV+ +L + Y ++ I E R S+ Y +
Sbjct: 70 TLLSKQEEMVQ----KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY----- 120
Query: 117 IVDKNKSLAE--IAREEVLEECGYDVPVEKL-EKIQTFRS-------GVGSAGDRQTLFF 166
+ N+ A+ ++R + P KL + + R GV +G + +
Sbjct: 121 --NDNQVFAKYNVSRLQ---------PYLKLRQALLELRPAKNVLIDGVLGSG-KTWV-A 167
Query: 167 VEVTDDMKV--NSGGGV----------DEELIEVVE 190
++V KV + E ++E+++
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203
>1xsa_A BIS(5'-nucleosyl)-tetraphosphatase; nudix enzyme, human AP4A
hydrolase, alpha-beta; NMR {Homo sapiens} SCOP:
d.113.1.1 PDB: 1xsb_A 1xsc_A*
Length = 153
Score = 39.0 bits (91), Expect = 3e-04
Identities = 18/94 (19%), Positives = 32/94 (34%), Gaps = 7/94 (7%)
Query: 116 GIVDKNKSLAEIAREEVLEECGYDVPVEKL--EKIQTFRSGVGSAGDRQTLFFVEVTD-D 172
G V+ + E A EE G + + + + + EV D D
Sbjct: 48 GHVEPGEDDLETALRATQEEAGIEAGQLTIIEGFKRELNYVARNKPKTVIYWLAEVKDYD 107
Query: 173 MKVNSGGGVDEELIEVVEMGLEEAREYLAQDEVR 206
+++ E +GLEEA + E++
Sbjct: 108 VEIRL----SHEHQAYRWLGLEEACQLAQFKEMK 137
>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18;
NUDT18, NXR1, nucleotide hydrolase, hydrolase,
structural genomics; 2.10A {Homo sapiens}
Length = 156
Score = 38.2 bits (89), Expect = 6e-04
Identities = 16/93 (17%), Positives = 28/93 (30%), Gaps = 8/93 (8%)
Query: 115 AGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTD-DM 173
AG ++ +++ E + EV EE G E L V G F
Sbjct: 52 AGRMEPGETIVEALQREVKEEAGLHCEPETL-------LSVEERGPSWVRFVFLARPTGG 104
Query: 174 KVNSGGGVDEELIEVVEMGLEEAREYLAQDEVR 206
+ + D E ++ L ++
Sbjct: 105 ILKTSKEADAESLQAAWYPRTSLPTPLRAHDIL 137
>2pbt_A AP4A hydrolase; nudix protein, diadenosine polyphosphate,
structural genomics, NPPSFA; HET: PGE; 1.80A {Aquifex
aeolicus} PDB: 2pq1_A* 3i7u_A* 3i7v_A*
Length = 134
Score = 36.8 bits (86), Expect = 0.001
Identities = 18/95 (18%), Positives = 37/95 (38%), Gaps = 11/95 (11%)
Query: 116 GIVDKNKSLAEIAREEVLEECGYDV-PVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMK 174
G ++ + E A EV EE G ++ + +I + + G + +++ MK
Sbjct: 32 GNIEPGEKPEETAVREVWEETGVKGEILDYIGEIHYWYTLKGERIFKTVKYYL-----MK 86
Query: 175 VNSGGGVDEELIEVVE---MGLEEAREYLAQDEVR 206
G EV + ++EA++ L +
Sbjct: 87 YKEGEPRPSW--EVKDAKFFPIKEAKKLLKYKGDK 119
>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix,
hydrolase, GFG, GFG-1, FGF2AS, structural GENO
structural genomics consortium, SGC; HET: FLC; 1.70A
{Homo sapiens}
Length = 199
Score = 37.2 bits (86), Expect = 0.002
Identities = 18/98 (18%), Positives = 36/98 (36%), Gaps = 14/98 (14%)
Query: 115 AGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMK 174
G+ + + + + A EV EE G + I+ + G+ G ++ + +
Sbjct: 58 GGLSEPEEDIGDTAVREVFEETGIKSEFRSVLSIRQQHTNPGAFGK-SDMYII-----CR 111
Query: 175 VNSGGG----VDEELIEVVEMGLEEAREYLAQDEVRSP 208
+ EE + M L + LA+ E +P
Sbjct: 112 LKPYSFTINFCQEECLRCEWMDLND----LAKTENTTP 145
>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR
{Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A
Length = 171
Score = 35.0 bits (81), Expect = 0.008
Identities = 12/105 (11%), Positives = 27/105 (25%), Gaps = 5/105 (4%)
Query: 114 CAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDM 173
G V ++ E R E EE ++ + +F + ++ +
Sbjct: 68 VGGAVQSGETYEEAFRREAREELNVEIDALSWRPLASFSPFQTTLSSFMCVYELRSDATP 127
Query: 174 KVNSGGGVDEELIEVVEMGLEEAREYLAQDEVRSPSGFLFAMHWF 218
N ++ + E +A E +
Sbjct: 128 IFN-----PNDISGGEWLTPEHLLARIAAGEAAKGDLAELVRRCY 167
>3eds_A MUTT/nudix family protein; MUT/nudix protein, protein structure
initiative II(PSI II), nysgxrc; 1.76A {Bacillus
thuringiensis str} PDB: 3smd_A
Length = 153
Score = 34.8 bits (80), Expect = 0.009
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 115 AGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQT 150
AG ++ ++ E EV EE G V V+K + +
Sbjct: 49 AGAIELGETPEEAVVREVWEETGLKVQVKKQKGVFG 84
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.4 bits (81), Expect = 0.014
Identities = 42/252 (16%), Positives = 74/252 (29%), Gaps = 93/252 (36%)
Query: 3 KITE---AQIIETQSSQFIQPYSVKFVQEALIKENQYC--HPQFLITQHKDYYIVMNKIT 57
+I E A I ET ++ + K +E Y + L++ T
Sbjct: 1683 RIRENYSAMIFETIVDGKLK--TEKIFKEINEHSTSYTFRSEKGLLSA-----------T 1729
Query: 58 E-AQ---------IIETRSSQFIQP------------YS--VKFVQVL-----LSV---- 84
+ Q E S+ + P Y+ V+ + V
Sbjct: 1730 QFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYR 1789
Query: 85 --YINSIPEEDRTGSIDVTKY------PAELGVTL------EFCAGIVDKNKSLAEIARE 130
+ D G + Y P + + + + L EI
Sbjct: 1790 GMTMQVAVPRDELGR---SNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIV-- 1844
Query: 131 EVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTL-FFVEVTDDMKVNSGGGVDEELIEV- 188
Y+V + Q V +AGD + L V + +K+ +D +IE+
Sbjct: 1845 ------NYNVENQ-----QY----V-AAGDLRALDTVTNVLNFIKLQK---ID--IIELQ 1883
Query: 189 VEMGLEEAREYL 200
+ LEE +L
Sbjct: 1884 KSLSLEEVEGHL 1895
>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics,
joint center for structural genomics, J protein
structure initiative; 2.27A {Streptococcus suis}
Length = 206
Score = 34.8 bits (80), Expect = 0.014
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 115 AGIVDKNKSLAEIAREEVLEECGYDVPVEKL 145
G D ++S+ + +EV EE G DV +++
Sbjct: 97 GGWCDVDQSVKDNVVKEVKEEAGLDVEAQRV 127
>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II),
NYSGXRC, 11181H, structural genomics; 2.15A
{Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Length = 364
Score = 34.8 bits (79), Expect = 0.015
Identities = 16/110 (14%), Positives = 35/110 (31%), Gaps = 19/110 (17%)
Query: 116 GIVDKNKSLAEIAREEVLEECGYDV-----------PVEKLEKIQTFRSGVGSAGDRQTL 164
G +++N++ A E+ EE G V P+ + K +
Sbjct: 56 GKLEQNETHRHAAVREIGEETGSPVKLGPYLCEVEYPLSEEGKKTRHSHDCTADTKHTLY 115
Query: 165 FFVEVTDDMKVNSGGGV--------DEELIEVVEMGLEEAREYLAQDEVR 206
+ + E+ ++V + + EAR+ L+ +
Sbjct: 116 WMAQPISADDAEHLLDAFGPVHRADVGEINDIVWVSVREARKILSHSTDK 165
>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA
exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus
cereus} PDB: 3q4i_A
Length = 205
Score = 34.3 bits (79), Expect = 0.015
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 115 AGIVDKNKSLAEIAREEVLEECGYDVPVEKL 145
G D + E+A +EV EE GY+V KL
Sbjct: 96 GGWADVGYTPTEVAAKEVFEETGYEVDHFKL 126
>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium
cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP:
d.113.1.1 PDB: 1kt9_A*
Length = 138
Score = 33.3 bits (77), Expect = 0.020
Identities = 15/93 (16%), Positives = 27/93 (29%), Gaps = 6/93 (6%)
Query: 116 GIVDKNKSLAEIAREEVLEECGYD-VPVEKLEKI-QTFRSGVGSAGDRQTLFFVEVTDDM 173
G VD + + A E EE + E +T + ++ +
Sbjct: 37 GHVDPGEDEWQAAIRETKEEANITKEQLTIHEDCHETLFYEAKGKPKSVKYWLAKLNNPD 96
Query: 174 KVNSGGGVDEELIEVVEMGLEEAREYLAQDEVR 206
V + E LE+A + E+
Sbjct: 97 DVQ----LSHEHQNWKWCELEDAIKIADYAEMG 125
>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol
polyphosphate metabolism, structural genomics,
structural genomics consortium; HET: IHP; 1.25A {Homo
sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A*
Length = 194
Score = 33.5 bits (76), Expect = 0.031
Identities = 16/89 (17%), Positives = 31/89 (34%), Gaps = 6/89 (6%)
Query: 116 GIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKV 175
G ++ + + A EV EE G + +L I + L EV +D +
Sbjct: 73 GGMEPEEEPSVAAVREVCEEAGVKGTLGRLVGIFENQER-KHRTYVYVLIVTEVLEDWED 131
Query: 176 NSGGGVDEELIEVVEMGLEEAREYLAQDE 204
+ + +E+A + L +
Sbjct: 132 S-----VNIGRKREWFKIEDAIKVLQYHK 155
>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer,
putative NUDI hydrolase, structural genomics, unknown
function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1
PDB: 1jrk_A 1k26_A
Length = 156
Score = 32.9 bits (75), Expect = 0.041
Identities = 12/61 (19%), Positives = 19/61 (31%)
Query: 112 EFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTD 171
+ G V+ N++ E + E EE G V + V L V
Sbjct: 26 IYPGGHVEHNETPIEAVKREFEEETGIVVEPIGFTYGIIDENAVERPMPLVILEEVVKYP 85
Query: 172 D 172
+
Sbjct: 86 E 86
>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay,
cytoplasm, hydrolase, manganese, metal-binding, mRNA
processing; NMR {Saccharomyces cerevisiae}
Length = 146
Score = 32.5 bits (74), Expect = 0.054
Identities = 14/91 (15%), Positives = 35/91 (38%), Gaps = 4/91 (4%)
Query: 116 GIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKV 175
G + K+++ + EV EE G+D+ + R+ G + F+
Sbjct: 35 GKISKDENDIDCCIREVKEEIGFDLTDYIDDNQFIERNIQG----KNYKIFLISGVSEVF 90
Query: 176 NSGGGVDEELIEVVEMGLEEAREYLAQDEVR 206
N V E+ ++ ++ + + + ++
Sbjct: 91 NFKPQVRNEIDKIEWFDFKKISKTMYKSNIK 121
>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative
II(PSI II), NYSGXRC, structural genomics; 2.55A
{Bacillus thuringiensis str}
Length = 171
Score = 32.4 bits (74), Expect = 0.068
Identities = 16/87 (18%), Positives = 36/87 (41%), Gaps = 5/87 (5%)
Query: 115 AGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFV--EVTDD 172
G V+ ++L E E+ EE G +V K++K+ ++ + F+ + +
Sbjct: 52 GGRVENGETLEEAMIREMREETGLEV---KIKKLLYVCDKPDASPSLLHITFLLERIEGE 108
Query: 173 MKVNSGGGVDEELIEVVEMGLEEAREY 199
+ + S + +V + + E Y
Sbjct: 109 ITLPSNEFDHNPIHDVQMVPINELSYY 135
>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national
institute of allergy AN infectious diseases; 2.50A
{Burkholderia pseudomallei}
Length = 157
Score = 31.6 bits (72), Expect = 0.096
Identities = 15/93 (16%), Positives = 26/93 (27%), Gaps = 9/93 (9%)
Query: 112 EFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTD 171
G VD + + E+ EE G + L + + G+
Sbjct: 57 GLPGGKVDWLEPVERAVCREIEEELGIALERATL--LCVVDHIDAANGEHWVAPVYLAHA 114
Query: 172 DMKVNSGGGVDEELIEVVEMG---LEEAREYLA 201
SG E +G L++ + L
Sbjct: 115 F----SGEPRVVEPDRHEALGWFALDDLPQPLT 143
>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II),
NYSGXRC, structural genomics; 2.02A {Clostridium
perfringens atcc 13124}
Length = 159
Score = 30.7 bits (69), Expect = 0.24
Identities = 11/45 (24%), Positives = 17/45 (37%)
Query: 116 GIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGD 160
G ++ N+ E E EE G +V + I +S S
Sbjct: 35 GHIEVNELPEEACIREAKEEAGLNVTLYNPIDINLKKSCDLSGEK 79
>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2,
protein structure initiative; 2.50A {Bacillus
halodurans}
Length = 188
Score = 30.5 bits (69), Expect = 0.31
Identities = 11/61 (18%), Positives = 22/61 (36%)
Query: 112 EFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTD 171
G ++ +S+ E + E EE G V +L+ I + + + F
Sbjct: 29 VAPGGKMEAGESILETVKREYWEETGITVKNPELKGIFSMVIFDEGKIVSEWMLFTFKAT 88
Query: 172 D 172
+
Sbjct: 89 E 89
>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix
Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP:
d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A*
Length = 160
Score = 30.3 bits (68), Expect = 0.33
Identities = 7/36 (19%), Positives = 15/36 (41%)
Query: 116 GIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTF 151
G V K+++L + E G +P+ + +
Sbjct: 51 GRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVW 86
>2xsq_A U8 snoRNA-decapping enzyme; hydrolase, mRNA decapping, mRNA
turnover, structural genomic consortium, SGC; HET: IMP;
1.72A {Homo sapiens} PDB: 3cou_A 3mgm_A
Length = 217
Score = 30.6 bits (68), Expect = 0.34
Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 12/90 (13%)
Query: 111 LEFCAGIVDKNK-SLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEV 169
L F G VD SL + E+ EE G ++E+ S VGS F+ +
Sbjct: 77 LGFPGGFVDTQDRSLEDGLNRELREELGEAAAAFRVERTDYRSSHVGSGPRVVAHFYAKR 136
Query: 170 TDDMKVNSGGGVDEELIEVVEMGLEEAREY 199
+ E + VE G A+++
Sbjct: 137 -----------LTLEELLAVEAGATRAKDH 155
>2b06_A MUTT/nudix family protein; structural genomics, P protein structure
initiative, midwest center for structural genomics,
MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1
Length = 155
Score = 30.1 bits (68), Expect = 0.38
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 112 EFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTF 151
F G V+ +++ AE E+ EE G + +L I+ +
Sbjct: 39 AFPGGHVENDEAFAESVIREIYEETGLTIQNPQLVGIKNW 78
>2q24_A Putative TETR family transcriptional regulator; structural
genomics, PSI, protein structure initiative; 1.80A
{Streptomyces coelicolor A3}
Length = 194
Score = 29.2 bits (66), Expect = 0.77
Identities = 18/106 (16%), Positives = 30/106 (28%), Gaps = 28/106 (26%)
Query: 126 EIAREEVLEECGYDVPVEKLEKIQTFRSGVGSA------GDRQTLFFVEVTDDMKVNSGG 179
A V E G D +E++ + +GVGS R+ L
Sbjct: 22 AAAVR-VFSEEGLDAHLERIAR----EAGVGSGTLYRNFPTREAL-IEAA---------- 65
Query: 180 GVDEELIEVVEMGLEEAREYLAQDEVRSP-SGFLFAMHWFLAAKAG 224
E+ + + LA+ + + AK G
Sbjct: 66 -YRNEVARLC----DSVPGLLAELPPAEALRAWTRRFIDYATAKLG 106
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei
structure initiative; 2.00A {Nitrosomonas europaea atcc
19718}
Length = 189
Score = 28.9 bits (65), Expect = 1.1
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 113 FCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTF 151
AG ++ N++L + A E LEE V + +L + +
Sbjct: 69 LPAGFMENNETLVQGAARETLEEANARVEIRELYAVYSL 107
>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2,
protein structure initiative; 1.70A {Chromobacterium
violaceum}
Length = 163
Score = 28.3 bits (63), Expect = 1.2
Identities = 5/29 (17%), Positives = 12/29 (41%)
Query: 112 EFCAGIVDKNKSLAEIAREEVLEECGYDV 140
G ++ + ++ E+ EE G +
Sbjct: 40 NLPGGKANRGELRSQALIREIREETGLRI 68
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 685
Score = 29.2 bits (65), Expect = 1.3
Identities = 12/47 (25%), Positives = 16/47 (34%), Gaps = 11/47 (23%)
Query: 97 SIDVTKYPAELGVTLEFC-AGIVDKNKSLAEIAREEVLEECGYDVPV 142
+V Y +L LE G+ L + G DVPV
Sbjct: 298 QTEVYAYHPKLKEWLEVATFGVY----------SPVALSKYGIDVPV 334
>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT
NEW YORK SGX research center for structural genomics,
nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum}
Length = 144
Score = 28.4 bits (64), Expect = 1.3
Identities = 9/41 (21%), Positives = 15/41 (36%)
Query: 112 EFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFR 152
EF G ++ ++ E+ EE G D L +
Sbjct: 38 EFPGGKLEPGETPEAALVRELAEELGVDTRASCLAPLAFAS 78
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA
polymerase, translation, transferase-RNA complex; HET:
GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A*
3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G*
1efu_B
Length = 1289
Score = 29.1 bits (65), Expect = 1.4
Identities = 13/21 (61%), Positives = 16/21 (76%), Gaps = 3/21 (14%)
Query: 182 DEELIEVVEMGLEEAREYLAQ 202
DEEL+E+VEM E RE L+Q
Sbjct: 427 DEELLELVEM---EVRELLSQ 444
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 701
Score = 28.8 bits (64), Expect = 1.6
Identities = 8/22 (36%), Positives = 10/22 (45%), Gaps = 5/22 (22%)
Query: 126 EIA-----REEVLEECGYDVPV 142
E+A L + G DVPV
Sbjct: 313 EVATFGVYSPVALSKYGIDVPV 334
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation
factor, protein synthesis, antibiotic, GTP-binding,
nucleotide-binding; HET: GNP PUL; 1.4A {Thermus
thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB:
2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z*
2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A*
2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Length = 405
Score = 28.3 bits (64), Expect = 2.0
Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 3/21 (14%)
Query: 182 DEELIEVVEMGLEEAREYLAQ 202
D EL+++VEM E R+ L Q
Sbjct: 143 DPELLDLVEM---EVRDLLNQ 160
>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious
diseases, hydrol structural genomics; 2.10A {Bartonella
henselae}
Length = 158
Score = 27.7 bits (62), Expect = 2.0
Identities = 10/41 (24%), Positives = 17/41 (41%)
Query: 112 EFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFR 152
EF G V++ ++ E+ EE G V + L +
Sbjct: 59 EFPGGKVEQGETPEASLIRELEEELGVHVQADNLFPLTFAS 99
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding
protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1
b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Length = 397
Score = 28.3 bits (64), Expect = 2.1
Identities = 9/21 (42%), Positives = 14/21 (66%), Gaps = 3/21 (14%)
Query: 182 DEELIEVVEMGLEEAREYLAQ 202
D E++E+VE+ E RE L +
Sbjct: 134 DSEMVELVEL---EIRELLTE 151
>3zuz_A Protein SHQ1; cell cycle, RNP assembly, X-linked dyskeratosis
congenita; HET: CME; 1.50A {Saccharomyces cerevisiae}
PDB: 3zv0_A 3uah_A 3uai_D
Length = 365
Score = 28.2 bits (62), Expect = 2.1
Identities = 17/104 (16%), Positives = 30/104 (28%), Gaps = 12/104 (11%)
Query: 43 ITQHKDYYIVMNKITEAQIIETRSSQFIQPYSVKFVQVLLSVYINSIPEEDRTGSIDVTK 102
+ D Y V +K+ + + F+ I S+ E R ++K
Sbjct: 274 TFRFHDVYYVYDKV------------LLDDLTAWFISQGSENVIRSLALEMRKEQESLSK 321
Query: 103 YPAELGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLE 146
E F + I E+L E Y + +
Sbjct: 322 QDIEFECIASFNEQTGEPEWETLNIREMEILAESEYREQQQNPQ 365
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 665
Score = 28.4 bits (63), Expect = 2.4
Identities = 6/14 (42%), Positives = 7/14 (50%)
Query: 129 REEVLEECGYDVPV 142
L + G DVPV
Sbjct: 321 SPVALSKYGIDVPV 334
>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica
serovar typhimurium STR. unknown function; HET: PO4;
1.75A {Salmonella enterica subsp} PDB: 3n77_A
Length = 165
Score = 27.5 bits (61), Expect = 2.7
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 112 EFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLE 146
G V+ + + E R E+ EE G + + +
Sbjct: 58 ALSGGGVEPGERIEEALRREIREELGEQLILSDIT 92
>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis,
structural genomics, PSI, structure initiative; HET:
1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1
Length = 148
Score = 27.4 bits (61), Expect = 2.8
Identities = 18/96 (18%), Positives = 30/96 (31%), Gaps = 9/96 (9%)
Query: 112 EFCAGIVDKNKSLAEIAREEVLEECGYDVPV-EKLEKIQTFRSGVGSAGDRQTLFFVEVT 170
G ++ ++ E EVLEE G V + L + + + V
Sbjct: 44 FLPGGEIEGTETKEEAIHREVLEELGISVEIGCYLGEADEYFYSNHRQTAYYNPGYFYV- 102
Query: 171 DDMKVNSGGGVDEELIEVVE---MGLEEAREYLAQD 203
N+ + E L + EEA L +
Sbjct: 103 ----ANTWRQLSEPLERTNTLHWVAPEEAVRLLKRG 134
>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase;
HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB:
1qvj_A*
Length = 292
Score = 27.5 bits (60), Expect = 3.2
Identities = 10/60 (16%), Positives = 19/60 (31%)
Query: 113 FCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDD 172
G+VD + ++ + E EE + EK + + + DD
Sbjct: 154 IPGGMVDPGEKISATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQDHLVIYKGYVDD 213
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 648
Score = 28.0 bits (62), Expect = 3.3
Identities = 6/14 (42%), Positives = 7/14 (50%)
Query: 129 REEVLEECGYDVPV 142
L + G DVPV
Sbjct: 321 SPVALSKYGIDVPV 334
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine,
structural genomics, NPPSFA; HET: CIT; 1.70A
{Methanosarcina mazei}
Length = 370
Score = 27.5 bits (62), Expect = 3.9
Identities = 1/22 (4%), Positives = 7/22 (31%), Gaps = 3/22 (13%)
Query: 181 VDEELIEVVEMGLEEAREYLAQ 202
I+ ++ + + +
Sbjct: 125 THMHAIDELKA---KLKVITSG 143
>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2,
protein structure INI NEW YORK SGX research center for
structural genomics; 2.20A {Listeria innocua}
Length = 187
Score = 27.1 bits (60), Expect = 4.1
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 116 GIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTF 151
G VD+N+S + A E+ EE L F
Sbjct: 74 GFVDENESAEQAAERELEEETSLTDIP--LIPFGVF 107
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus
influenzae} SCOP: c.26.2.4
Length = 141
Score = 26.8 bits (60), Expect = 4.3
Identities = 6/40 (15%), Positives = 14/40 (35%)
Query: 163 TLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQ 202
L + V + G +D + + + E ++ L
Sbjct: 32 KLSIIHVDVNFSDLYTGLIDVNMSSMQDRISTETQKALLD 71
>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2,
protein structure INI NEW YORK SGX research center for
structural genomics; 1.70A {Methanosarcina mazei}
Length = 153
Score = 26.5 bits (59), Expect = 4.9
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 112 EFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKL 145
+ G V+ ++SL E EV EE G + +
Sbjct: 39 DLPGGKVNPDESLKEGVAREVWEETGITMVPGDI 72
>2rin_A Putative glycine betaine-binding ABC transporter protein; type II
binding protein, aromatic BOX, acetylcholine, protein
binding; HET: ACH; 1.80A {Rhizobium meliloti} PDB:
2rej_A 2rf1_A 2reg_A* 3hcq_A
Length = 298
Score = 26.7 bits (59), Expect = 6.3
Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
Query: 125 AEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEV-TDDMKVNSGGGVDE 183
A +LE GY+ V+ L T+ + + D F+ M+ + ++
Sbjct: 23 TATATT-ILEALGYETDVKVLSVPVTY-TSL-KNKDID--VFLGNWMPTMEADIAPYRED 77
Query: 184 ELIEVVEMGLEEAREYLA 201
+ +E V L A+ LA
Sbjct: 78 KSVETVRENLAGAKYTLA 95
>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural
genomics, escherichia coli putative nudix hydrolase,
PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP:
d.113.1.2
Length = 180
Score = 26.6 bits (59), Expect = 6.3
Identities = 18/89 (20%), Positives = 29/89 (32%), Gaps = 7/89 (7%)
Query: 114 CAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDM 173
G+V ++ L E AR E EE G + + F + LF
Sbjct: 71 AGGVVQADEQLLESARREAEEELG--IAGVPFAEHGQFYFEDKNCRVWGALFSCVSHGPF 128
Query: 174 KVNSGGGVDEELIEVVEMGLEEAREYLAQ 202
+ +E+ EV + EE +
Sbjct: 129 ALQE-----DEVSEVCWLTPEEITARCDE 152
>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein
structure initiative, midwest CENT structural genomics,
MCSG; 1.63A {Streptococcus pneumoniae}
Length = 154
Score = 26.2 bits (58), Expect = 6.4
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 116 GIVDKNKSLAEIAREEVLEECGYDVPVEKL 145
G + N+S + EV EE G +L
Sbjct: 46 GAIQVNESTEDAVVREVKEELGVKAQAGQL 75
>3r7p_A Ribosomal protein 3/homing endonuclease-like FUSI protein; homing
endonuclease, gene therapy, hydrolase-DNA complex; HET:
DNA; 2.70A {Leptographium truncatum}
Length = 315
Score = 26.7 bits (58), Expect = 6.9
Identities = 6/37 (16%), Positives = 13/37 (35%)
Query: 22 SVKFVQEALIKENQYCHPQFLITQHKDYYIVMNKITE 58
++ + + +K F ITQ +M +
Sbjct: 188 YIRIAKNSTLKTGYQVQSVFQITQDTRDIELMKNLIS 224
>3i6e_A Muconate cycloisomerase I; structural genomics, NYSGXRC, targer
9468A, muconate lactonizing enzyme, PSI-2, protein
structure initiative; 1.70A {Ruegeria pomeroyi} PDB:
3i6t_A
Length = 385
Score = 26.9 bits (60), Expect = 7.0
Identities = 8/91 (8%), Positives = 17/91 (18%), Gaps = 18/91 (19%)
Query: 148 IQTFRSGVGSAGDRQTLFFVEVTDDMKVNSG----------GGVDEELIEVVEMGLEEAR 197
+ G+G + + + + G R
Sbjct: 23 VSARDHGIGRVEGSCEIVVLRLVAE----GGAEGFGEASPWAVFTGTPEASYAALDRYLR 78
Query: 198 EYLAQDEVRSPSGFLFAMHWFL----AAKAG 224
+ V + + AKA
Sbjct: 79 PLVIGRRVGDRVAIMDEAARAVAHCTEAKAA 109
>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics,
structural genomics consortium, SGC, NU MUTT-like,
hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB:
1iry_A 3zr0_A* 3zr1_A
Length = 176
Score = 26.2 bits (58), Expect = 7.1
Identities = 10/40 (25%), Positives = 16/40 (40%)
Query: 112 EFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTF 151
G V + +++ + AR E+ EE G V F
Sbjct: 53 NGFGGKVQEGETIEDGARRELQEESGLTVDALHKVGQIVF 92
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.381
Gapped
Lambda K H
0.267 0.0691 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,584,186
Number of extensions: 216940
Number of successful extensions: 591
Number of sequences better than 10.0: 1
Number of HSP's gapped: 572
Number of HSP's successfully gapped: 78
Length of query: 230
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 140
Effective length of database: 4,188,903
Effective search space: 586446420
Effective search space used: 586446420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.4 bits)