RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11834
(230 letters)
>d1g0sa_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Escherichia coli
[TaxId: 562]}
Length = 209
Score = 56.6 bits (136), Expect = 1e-10
Identities = 27/118 (22%), Positives = 57/118 (48%), Gaps = 4/118 (3%)
Query: 108 GVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFV 167
LE AG++++ +S+ ++AR E +EE G V ++ + + +F + G +R ++
Sbjct: 89 PWLLEMVAGMIEEGESVEDVARREAIEEAGLIV--KRTKPVLSFLASPGGTSERSSIMVG 146
Query: 168 EVTDDMKVNSGGGVDE-ELIEVVEMGLEEAREYLAQDEVRSPSGFLFAMHWFLAAKAG 224
EV G DE E I V + E+A +++ + ++ + + + A+ W
Sbjct: 147 EVDATTASGIHGLADENEDIRVHVVSREQAYQWVEEGKIDN-AASVIALQWLQLHHQA 203
>d1viua_ d.113.1.1 (A:) ADP-ribose pyrophosphatase homologue YffH
{Escherichia coli [TaxId: 562]}
Length = 189
Score = 56.6 bits (136), Expect = 1e-10
Identities = 32/111 (28%), Positives = 59/111 (53%), Gaps = 4/111 (3%)
Query: 108 GVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFV 167
G +E CAG++D ++ R+E +EE GY+V ++ K+ G + F
Sbjct: 76 GQLIESCAGLLDNDEPE-VCIRKEAIEETGYEVG--EVRKLFELYMSPGGVTELIHFFIA 132
Query: 168 EVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQDEVRSPSGFLFAMHWF 218
E +D+ + N+GGGV++E IEV+E+ +A E + E+R + +++
Sbjct: 133 EYSDNQRANAGGGVEDEDIEVLELPFSQALEMIKTGEIRD-GKTVLLLNYL 182
>d1v8ya_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus
thermophilus [TaxId: 274]}
Length = 158
Score = 49.3 bits (117), Expect = 3e-08
Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 6/117 (5%)
Query: 104 PAELGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQT 163
PA LE AG+++ + E AR E+ E+ G + S S G
Sbjct: 45 PAVGLAPLEIPAGLIEPGEDPLEAARRELAEQTGLSG------DLTYLFSYFVSPGFTDE 98
Query: 164 LFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQDEVRSPSGFLFAMHWFLA 220
V + +++K ++E IEVV M EEA E + EV + L + ++ A
Sbjct: 99 KTHVFLAENLKEVEAHPDEDEAIEVVWMRPEEALERHQRGEVEFSATGLVGVLYYHA 155
>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus
radiodurans [TaxId: 1299]}
Length = 158
Score = 47.5 bits (112), Expect = 1e-07
Identities = 19/102 (18%), Positives = 35/102 (34%), Gaps = 3/102 (2%)
Query: 112 EFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTD 171
+G V+ ++ + A E EE G V K R G + ++ E
Sbjct: 45 HIPSGAVEDGENPQDAAVREACEETGLRVRPVKFLGAYLGRFPDGVL-ILRHVWLAEPEP 103
Query: 172 DMKVNSGGGVDEELIEVVEMGLEEAREYLAQDEVRSPSGFLF 213
+ +E+ E + E+ + A ++R LF
Sbjct: 104 GQTLAPA--FTDEIAEASFVSREDFAQLYAAGQIRMYQTKLF 143
>d1vcda1 d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus
thermophilus [TaxId: 274]}
Length = 126
Score = 41.9 bits (98), Expect = 8e-06
Identities = 25/95 (26%), Positives = 36/95 (37%), Gaps = 7/95 (7%)
Query: 112 EFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTD 171
F G + +SL E A EV EE G E L + R +R+ +F+
Sbjct: 27 VFPKGHPEPGESLEEAAVREVWEETGVRA--EVLLPLYPTRYVNPKGVEREVHWFL---- 80
Query: 172 DMKVNSGGGVDEELIEVVEMGLEEAREYLAQDEVR 206
M+ ++E + EEAR LA E
Sbjct: 81 -MRGEGAPRLEEGMTGAGWFSPEEARALLAFPEDL 114
>d1vhza_ d.113.1.1 (A:) ADP compounds hydrolase NudE {Escherichia
coli [TaxId: 562]}
Length = 186
Score = 40.8 bits (95), Expect = 3e-05
Identities = 20/112 (17%), Positives = 37/112 (33%), Gaps = 8/112 (7%)
Query: 109 VTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVE 168
L F G++D +S+ E A E+ EE G+ L ++ + + +
Sbjct: 74 YELGFSKGLIDPGESVYEAANRELKEEVGF--GANDLTFLKKLSMAPSYFSSKMNIVVAQ 131
Query: 169 VTDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQDEV---RSPSGFLFAMHW 217
+ G + E + V L + L + R+ S W
Sbjct: 132 DLYPESLE---GDEPEPLPQVRWPLAHMMDLLEDPDFNEARNVSALFLVREW 180
>d1mqea_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 202
Score = 38.9 bits (90), Expect = 2e-04
Identities = 18/119 (15%), Positives = 39/119 (32%), Gaps = 7/119 (5%)
Query: 108 GVTLEFCAGIVDKNKSLAEIA-REEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFF 166
E AG++D + E+ EE G + + + G + + ++
Sbjct: 64 RRLWELPAGLLDVAGEPPHLTAARELREEVGLQA--STWQVLVDLDTAPGFSDESVRVYL 121
Query: 167 VEVTDDMKVNSGGGVD-EELIEVVEMGLEEAREYLAQDEVRSPSGFLFAMHWFLAAKAG 224
T +V E + + + EA + + E+ + S + + A G
Sbjct: 122 A--TGLREVGRPEAHHEEADMTMGWYPIAEAARRVLRGEIVN-SIAIAGVLAVHAVTTG 177
>d1xsba_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A
hydrolase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 153
Score = 38.3 bits (88), Expect = 2e-04
Identities = 22/112 (19%), Positives = 37/112 (33%), Gaps = 8/112 (7%)
Query: 112 EFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQT--LFFVEV 169
G V+ + E A EE G + + + + +T + EV
Sbjct: 44 TPPKGHVEPGEDDLETALRATQEEAGIEAGQLTIIEGFKRELNYVARNKPKTVIYWLAEV 103
Query: 170 TDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQDEVRSPSGFLFAMHWFLAA 221
D + E +GLEEA + E+++ L H FL +
Sbjct: 104 KDYDVEIR---LSHEHQAYRWLGLEEACQLAQFKEMKA---ALQEGHQFLCS 149
>d2azwa1 d.113.1.1 (A:2-148) Hypothetical protein EF1141
{Enterococcus faecalis [TaxId: 1351]}
Length = 147
Score = 36.7 bits (84), Expect = 6e-04
Identities = 20/114 (17%), Positives = 36/114 (31%), Gaps = 11/114 (9%)
Query: 112 EFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDR--QTLFFVEV 169
G ++ ++ E EVLEE G V + +F
Sbjct: 43 FLPGGEIEGTETKEEAIHREVLEELGISVEIGCYLGEADEYFYSNHRQTAYYNPGYFYVA 102
Query: 170 TDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQDEVRSPSGFLFAMHWFLAAKA 223
+++ E + + EEA L + R +A+ +LAA +
Sbjct: 103 NTWRQLSEP---LERTNTLHWVAPEEAVRLLKRGSHR------WAVEKWLAAAS 147
>d2a6ta2 d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p catalytic
domain {Schizosaccharomyces pombe [TaxId: 4896]}
Length = 151
Score = 35.5 bits (81), Expect = 0.002
Identities = 17/112 (15%), Positives = 36/112 (32%), Gaps = 4/112 (3%)
Query: 112 EFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTD 171
F G +DK++S + A EV EE G+D + G + + +
Sbjct: 30 GFPKGKIDKDESDVDCAIREVYEETGFDCSSRINPNEFIDMTIRGQNVRLYIIPGISLDT 89
Query: 172 DMKVNSGGGVDEELIEVVEMGLEEAREYLAQDEVRSPSGFLFAMHWFLAAKA 223
+ +E+ ++ L + + + F + + K
Sbjct: 90 RFESR----TRKEISKIEWHNLMDLPTFKKNKPQTMKNKFYMVIPFLAPLKK 137
>d2o5fa1 d.113.1.2 (A:7-168) Hypothetical protein DR0079
{Deinococcus radiodurans str. R1 (Deinococcus
radiodurans R1) [TaxId: 243230]}
Length = 162
Score = 34.4 bits (78), Expect = 0.004
Identities = 12/93 (12%), Positives = 26/93 (27%), Gaps = 5/93 (5%)
Query: 113 FCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDD 172
G V ++ E R E EE ++ + +F + ++ +
Sbjct: 61 SVGGAVQSGETYEEAFRREAREELNVEIDALSWRPLASFSPFQTTLSSFMCVYELRSDAT 120
Query: 173 MKVNSGGGVDEELIEVVEMGLEEAREYLAQDEV 205
N ++ + E +A E
Sbjct: 121 PIFN-----PNDISGGEWLTPEHLLARIAAGEA 148
>d1ktga_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A
hydrolase) {Caenorhabditis elegans [TaxId: 6239]}
Length = 137
Score = 28.7 bits (63), Expect = 0.33
Identities = 14/97 (14%), Positives = 30/97 (30%), Gaps = 6/97 (6%)
Query: 112 EFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQTL--FFVEV 169
G VD + + A E EE + + + G +++ + ++
Sbjct: 32 TPPKGHVDPGEDEWQAAIRETKEEANITKEQLTIHEDCHETLFYEAKGKPKSVKYWLAKL 91
Query: 170 TDDMKVNSGGGVDEELIEVVEMGLEEAREYLAQDEVR 206
+ V + E LE+A + E+
Sbjct: 92 NNPDDVQ----LSHEHQNWKWCELEDAIKIADYAEMG 124
>d1r9la_ c.94.1.1 (A:) Glycine betaine-binding periplasmic protein
ProX {Escherichia coli [TaxId: 562]}
Length = 309
Score = 28.8 bits (63), Expect = 0.48
Identities = 12/99 (12%), Positives = 28/99 (28%), Gaps = 6/99 (6%)
Query: 104 PAELGVTLEFCAGIVDKNKSLAEIAREEVLEECGYDVPVEKLEKIQTFRSGVGSAGDRQT 163
P + G+T+ + + + LE+ GY V + + ++GD
Sbjct: 4 PGK-GITVNPVQSTITEETFQTLLVSR-ALEKLGYTVNKPSEVDYNVGYTSL-ASGDAT- 59
Query: 164 LFFVEVTDD-MKVNSGGGVDEELIEVVEMGLEEAREYLA 201
F ++ + + A +
Sbjct: 60 -FTAVNWTPLHDNMYEAAGGDKKFYREGVFVNGAAQGYL 97
>d1xhja_ d.52.8.1 (A:) Nitrogen fixation protein NifU homolog SE0630
{Staphylococcus epidermidis [TaxId: 1282]}
Length = 88
Score = 25.2 bits (55), Expect = 3.2
Identities = 5/22 (22%), Positives = 11/22 (50%)
Query: 182 DEELIEVVEMGLEEAREYLAQD 203
+ + + V +E R +L +D
Sbjct: 5 NPTMFDQVAEVIERLRPFLLRD 26
>d1ku2a1 a.4.13.1 (A:273-332) Sigma factor SigA {Thermus aquaticus
[TaxId: 271]}
Length = 60
Score = 24.2 bits (53), Expect = 3.6
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 126 EIAREEVLEECGYDVPVEKLEKIQ 149
E + EE+ E G +++E+
Sbjct: 28 EPSYEEIAEAMGPGWDAKRVEETL 51
>d1tywa_ b.80.1.6 (A:) P22 tailspike protein {Salmonella phage P22
[TaxId: 10754]}
Length = 554
Score = 25.7 bits (56), Expect = 5.3
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 90 PEEDRTGSIDVTKYP 104
PE DR G +T+YP
Sbjct: 292 PELDRPGDYPITQYP 306
>d1ywqa1 d.90.1.1 (A:2-200) Hypothetical oxidoreductase BC1844
{Bacillus cereus [TaxId: 1396]}
Length = 199
Score = 25.2 bits (54), Expect = 6.3
Identities = 15/91 (16%), Positives = 27/91 (29%)
Query: 140 VPVEKLEKIQTFRSGVGSAGDRQTLFFVEVTDDMKVNSGGGVDEELIEVVEMGLEEAREY 199
+ E++E++ ++ + Q+ V + D V E L V EA
Sbjct: 26 ITKERIEEVLKTALHAPTSFNMQSGRMVVLMDGEHEKFWDIVKETLRARVPAENFEATVE 85
Query: 200 LAQDEVRSPSGFLFAMHWFLAAKAGQYVWRY 230
+ LF K + Y
Sbjct: 86 RLKGFHAGVGTVLFFEDQATVEKMQENAPLY 116
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.381
Gapped
Lambda K H
0.267 0.0483 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 864,676
Number of extensions: 39638
Number of successful extensions: 93
Number of sequences better than 10.0: 1
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 17
Length of query: 230
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 148
Effective length of database: 1,281,736
Effective search space: 189696928
Effective search space used: 189696928
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.0 bits)