BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11836
(112 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4EA3|A Chain A, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
Length = 434
Score = 40.4 bits (93), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 10 ACWAPVTFFALTAALGYPLISVTKSKIL--LVFFYPINSCFNPYLYALLTKHYR 61
CW PV F L LG S T IL +NSC NP LYA L ++++
Sbjct: 348 GCWTPVQVFVLAQGLGVQPSSETAVAILRFCTALGYVNSCLNPILYAFLDENFK 401
>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
pdb|4DJH|B Chain B, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
Length = 480
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 10/58 (17%)
Query: 11 CWAPVTFFALTAALGYPLISVTKSKILLVFFY------PINSCFNPYLYALLTKHYRR 62
CW P+ F L ALG S + S L +Y NS NP LYA L ++++R
Sbjct: 408 CWTPIHIFILVEALG----STSHSTAALSSYYFCIALGYTNSSLNPILYAFLDENFKR 461
>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A
Morphinan Antagonist
Length = 464
Score = 32.7 bits (73), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 10/58 (17%)
Query: 11 CWAPVTFFALTAALGYPLISVTKSKILLVFFY------PINSCFNPYLYALLTKHYRR 62
CW P+ + + AL I++ ++ V ++ NSC NP LYA L ++++R
Sbjct: 395 CWTPIHIYVIIKAL----ITIPETTFQTVSWHFCIALGYTNSCLNPVLYAFLDENFKR 448
>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
pdb|2J4Y|B Chain B, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
Length = 349
Score = 31.6 bits (70), Expect = 0.13, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 13/75 (17%)
Query: 1 MALLVLINF-ACWAP---VTFFALT---AALGYPLISVTKSKILLVFFYPINSCFNPYLY 53
M ++++I F CW P V F+ T + G +++ FF ++ +NP +Y
Sbjct: 254 MVIIMVIAFLICWLPYAGVAFYIFTHQGSCFGPIFMTIP------AFFAKTSAVYNPVIY 307
Query: 54 ALLTKHYRRDLVLTL 68
++ K +R +V TL
Sbjct: 308 IMMNKQFRNCMVTTL 322
>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal
Crystal Form
Length = 348
Score = 31.6 bits (70), Expect = 0.13, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 13/75 (17%)
Query: 1 MALLVLINF-ACWAP---VTFFALT---AALGYPLISVTKSKILLVFFYPINSCFNPYLY 53
M ++++I F CW P V F+ T + G +++ FF ++ +NP +Y
Sbjct: 253 MVIIMVIAFLICWLPYAGVAFYIFTHQGSCFGPIFMTIP------AFFAKTSAVYNPVIY 306
Query: 54 ALLTKHYRRDLVLTL 68
++ K +R +V TL
Sbjct: 307 IMMNKQFRNCMVTTL 321
>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To
Naltrindole
Length = 461
Score = 31.2 bits (69), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 11/59 (18%)
Query: 11 CWAPVTFFALTAALGYPLISVTKSKILLVFFYPI-------NSCFNPYLYALLTKHYRR 62
CWAP+ F + + L+ + + L+V + NS NP LYA L ++++R
Sbjct: 392 CWAPIHIFVIV----WTLVDINRRDPLVVAALHLCIALGYANSSLNPVLYAFLDENFKR 446
>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c,
D282c Rhodopsin Mutant With Bound Galphact Peptide
Length = 349
Score = 31.2 bits (69), Expect = 0.13, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 13/75 (17%)
Query: 1 MALLVLINF-ACWAP---VTFFALT---AALGYPLISVTKSKILLVFFYPINSCFNPYLY 53
M ++++I F CW P V F+ T + G +++ FF ++ +NP +Y
Sbjct: 254 MVIIMVIAFLICWLPYAGVAFYIFTHQGSCFGPIFMTIP------AFFAKTSAVYNPVIY 307
Query: 54 ALLTKHYRRDLVLTL 68
++ K +R +V TL
Sbjct: 308 IMMNKQFRNCMVTTL 322
>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|3OAX|B Chain B, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|1GZM|A Chain A, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1GZM|B Chain B, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1HZX|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1HZX|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|2I36|A Chain A, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|B Chain B, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|C Chain C, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I35|A Chain A, Crystal Structure Of Rhombohedral Crystal Form Of
Ground-State Rhodopsin
pdb|2I37|A Chain A, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|B Chain B, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|C Chain C, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2HPY|A Chain A, Crystallographic Model Of Lumirhodopsin
pdb|2HPY|B Chain B, Crystallographic Model Of Lumirhodopsin
pdb|2PED|A Chain A, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2PED|B Chain B, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2G87|A Chain A, Crystallographic Model Of Bathorhodopsin
pdb|2G87|B Chain B, Crystallographic Model Of Bathorhodopsin
pdb|1L9H|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1L9H|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1U19|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
pdb|1U19|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
Length = 349
Score = 30.8 bits (68), Expect = 0.17, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 13/75 (17%)
Query: 1 MALLVLINF-ACWAP---VTFFALT---AALGYPLISVTKSKILLVFFYPINSCFNPYLY 53
M ++++I F CW P V F+ T + G +++ FF ++ +NP +Y
Sbjct: 254 MVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIP------AFFAKTSAVYNPVIY 307
Query: 54 ALLTKHYRRDLVLTL 68
++ K +R +V TL
Sbjct: 308 IMMNKQFRNCMVTTL 322
>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted)
pdb|1LN6|A Chain A, Structure Of Bovine Rhodopsin (Metarhodopsin Ii)
pdb|3CAP|A Chain A, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3CAP|B Chain B, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3C9L|A Chain A, Structure Of Ground-State Bovine Rhodospin In A Hexagonal
Crystal Form
pdb|1F88|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1F88|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|3DQB|A Chain A, Crystal Structure Of The Active G-protein-coupled Receptor
Opsin In Complex With A C-terminal Peptide Derived From
The Galpha Subunit Of Transducin
pdb|3PQR|A Chain A, Crystal Structure Of Metarhodopsin Ii In Complex With A
C-Terminal Peptide Derived From The Galpha Subunit Of
Transducin
pdb|3PXO|A Chain A, Crystal Structure Of Metarhodopsin Ii
Length = 348
Score = 30.8 bits (68), Expect = 0.17, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 13/75 (17%)
Query: 1 MALLVLINF-ACWAP---VTFFALT---AALGYPLISVTKSKILLVFFYPINSCFNPYLY 53
M ++++I F CW P V F+ T + G +++ FF ++ +NP +Y
Sbjct: 253 MVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIP------AFFAKTSAVYNPVIY 306
Query: 54 ALLTKHYRRDLVLTL 68
++ K +R +V TL
Sbjct: 307 IMMNKQFRNCMVTTL 321
>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively
Active N2c,M257y,D282c Rhodopsin Mutant In Complex With
A Peptide Resembling The C-Terminus Of The
Galpha-Protein Subunit (Gact)
Length = 349
Score = 30.4 bits (67), Expect = 0.23, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 13/75 (17%)
Query: 1 MALLVLINF-ACWAP---VTFFALT---AALGYPLISVTKSKILLVFFYPINSCFNPYLY 53
M ++ +I F CW P V F+ T + G +++ FF ++ +NP +Y
Sbjct: 254 MVIIYVIAFLICWLPYAGVAFYIFTHQGSCFGPIFMTIP------AFFAKTSAVYNPVIY 307
Query: 54 ALLTKHYRRDLVLTL 68
++ K +R +V TL
Sbjct: 308 IMMNKQFRNCMVTTL 322
>pdb|3V2W|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
3.35a
pdb|3V2Y|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
2.80a
Length = 520
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 10 ACWAPVTFFALTAALGYPLISVT---KSKILLVFFYPINSCFNPYLYALLTKHYRRDLVL 66
ACWAP+ F L +G + + +++ LV +NS NP +Y L K RR +
Sbjct: 432 ACWAPL-FILLLLDVGCKVKTCDILFRAEYFLVL-AVLNSGTNPIIYTLTNKEMRRAFIR 489
Query: 67 TLAR 70
+ R
Sbjct: 490 IMGR 493
>pdb|3RFT|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFT|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFT|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFV|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
pdb|3RFV|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
pdb|3RFV|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
Length = 267
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 41 FYPINSCFNPYLYALLTKHYRRDLVLTLARIGICQERAHKYRMISS 86
Y ++ CF L + + ++ L RIG C + YRM+S+
Sbjct: 135 LYGVSKCFGENLARMYFDKFGQETALV--RIGSCTPEPNNYRMLST 178
>pdb|3OE6|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In I222
Spacegroup
Length = 508
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 21/74 (28%)
Query: 3 LLVLINFACWAP------VTFFALTAALG---------YPLISVTKSKILLVFFYPINSC 47
+L+L FACW P + F L + + IS+T++ L FF+ C
Sbjct: 417 ILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEA---LAFFH---CC 470
Query: 48 FNPYLYALLTKHYR 61
NP LYA L ++
Sbjct: 471 LNPILYAFLGAKFK 484
>pdb|3ODU|A Chain A, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3ODU|B Chain B, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3OE8|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|B Chain B, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|C Chain C, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 502
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 21/74 (28%)
Query: 3 LLVLINFACWAP------VTFFALTAALG---------YPLISVTKSKILLVFFYPINSC 47
+L+L FACW P + F L + + IS+T++ L FF+ C
Sbjct: 417 ILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEA---LAFFH---CC 470
Query: 48 FNPYLYALLTKHYR 61
NP LYA L ++
Sbjct: 471 LNPILYAFLGAKFK 484
>pdb|3OE0|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Cyclic Peptide Antagonist Cvx15
pdb|3OE9|A Chain A, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE9|B Chain B, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 499
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 21/74 (28%)
Query: 3 LLVLINFACWAP------VTFFALTAALG---------YPLISVTKSKILLVFFYPINSC 47
+L+L FACW P + F L + + IS+T++ L FF+ C
Sbjct: 414 ILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEA---LAFFH---CC 467
Query: 48 FNPYLYALLTKHYR 61
NP LYA L ++
Sbjct: 468 LNPILYAFLGAKFK 481
>pdb|3T51|B Chain B, Crystal Structures Of The Pre-Extrusion And Extrusion
States Of The Cusba Adaptor-Transporter Complex
pdb|3T51|C Chain C, Crystal Structures Of The Pre-Extrusion And Extrusion
States Of The Cusba Adaptor-Transporter Complex
pdb|3T53|B Chain B, Crystal Structures Of The Extrusion State Of The Cusba
Adaptor- Transporter Complex
pdb|3T53|C Chain C, Crystal Structures Of The Extrusion State Of The Cusba
Adaptor- Transporter Complex
pdb|3T56|B Chain B, Crystal Structure Of The Pre-Extrusion State Of The
Cusba Adaptor- Transporter Complex
pdb|3T56|C Chain C, Crystal Structure Of The Pre-Extrusion State Of The
Cusba Adaptor- Transporter Complex
Length = 336
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 21 TAALGYPLISVTKSKILLVFFYPINSCFNPYLYALL 56
T LG +VT+ + +P N +N Y YA++
Sbjct: 12 TQNLGVKTATVTRGPLTFAQSFPANVSYNEYQYAIV 47
>pdb|2LNL|A Chain A, Structure Of Human Cxcr1 In Phospholipid Bilayers
Length = 296
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 44 INSCFNPYLYALLTKHYRRDLVLTLARIG 72
++SC NP +YA + +++R + LA G
Sbjct: 268 LHSCLNPIIYAFIGQNFRHGFLKILAMHG 296
>pdb|3OW7|A Chain A, Crystal Structure Of The Membrane Fusion Protein Cusb From
Escherichia Coli.
pdb|3OW7|B Chain B, Crystal Structure Of The Membrane Fusion Protein Cusb From
Escherichia Coli.
pdb|3OOC|A Chain A, Crystal Structure Of The Membrane Fusion Protein Cusb From
Escherichia Coli
pdb|3OOC|B Chain B, Crystal Structure Of The Membrane Fusion Protein Cusb From
Escherichia Coli
pdb|3NE5|B Chain B, Crystal Structure Of The Cusba Heavy-Metal Efflux Complex
From Escherichia Coli
pdb|3NE5|C Chain C, Crystal Structure Of The Cusba Heavy-Metal Efflux Complex
From Escherichia Coli
pdb|3OPO|A Chain A, Crystal Structure Of The Membrane Fusion Protein Cusb From
Escherichia Coli
pdb|3OPO|B Chain B, Crystal Structure Of The Membrane Fusion Protein Cusb From
Escherichia Coli
pdb|4DNT|B Chain B, Crystal Structure Of The Cusba Heavy-Metal Efflux Complex
From Escherichia Coli, Mutant
pdb|4DNT|C Chain C, Crystal Structure Of The Cusba Heavy-Metal Efflux Complex
From Escherichia Coli, Mutant
pdb|4DOP|B Chain B, Crystal Structure Of The Cusba Heavy-Metal Efflux Complex
From Escherichia Coli, R Mutant
pdb|4DOP|C Chain C, Crystal Structure Of The Cusba Heavy-Metal Efflux Complex
From Escherichia Coli, R Mutant
pdb|4DNR|B Chain B, Crystal Structure Of The Cusba Heavy-metal Efflux Complex
From Escherichia Coli, E716f Mutant
pdb|4DNR|C Chain C, Crystal Structure Of The Cusba Heavy-metal Efflux Complex
From Escherichia Coli, E716f Mutant
Length = 413
Score = 25.4 bits (54), Expect = 8.8, Method: Composition-based stats.
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 21 TAALGYPLISVTKSKILLVFFYPINSCFNPYLYALL 56
T LG +VT+ + +P N +N Y YA++
Sbjct: 89 TQNLGVKTATVTRGPLTFAQSFPANVSYNEYQYAIV 124
>pdb|3H94|A Chain A, Crystal Structure Of The Membrane Fusion Protein Cusb From
Escherichia Coli
pdb|3H94|B Chain B, Crystal Structure Of The Membrane Fusion Protein Cusb From
Escherichia Coli
Length = 407
Score = 25.4 bits (54), Expect = 8.8, Method: Composition-based stats.
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 21 TAALGYPLISVTKSKILLVFFYPINSCFNPYLYALL 56
T LG +VT+ + +P N +N Y YA++
Sbjct: 89 TQNLGVKTATVTRGPLTFAQSFPANVSYNEYQYAIV 124
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.328 0.139 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,973,367
Number of Sequences: 62578
Number of extensions: 95903
Number of successful extensions: 264
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 245
Number of HSP's gapped (non-prelim): 19
length of query: 112
length of database: 14,973,337
effective HSP length: 76
effective length of query: 36
effective length of database: 10,217,409
effective search space: 367826724
effective search space used: 367826724
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 45 (21.9 bits)