Query psy11836
Match_columns 112
No_of_seqs 103 out of 1165
Neff 10.0
Searched_HMMs 46136
Date Fri Aug 16 20:11:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11836.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11836hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA03234 DNA packaging protein 99.8 5.3E-20 1.1E-24 125.3 7.1 76 2-77 240-323 (338)
2 KOG4219|consensus 99.8 7.3E-20 1.6E-24 124.2 4.4 77 1-77 263-342 (423)
3 PHA03235 DNA packaging protein 99.8 5.9E-19 1.3E-23 122.7 8.3 70 2-71 247-324 (409)
4 PHA02834 chemokine receptor-li 99.7 6.9E-18 1.5E-22 114.3 6.7 69 2-70 232-309 (323)
5 PHA02638 CC chemokine receptor 99.7 1.3E-16 2.9E-21 111.3 6.4 71 1-71 315-398 (417)
6 KOG4220|consensus 99.7 2.7E-17 5.8E-22 112.3 1.9 68 2-70 420-487 (503)
7 PHA03087 G protein-coupled che 99.5 9.7E-15 2.1E-19 99.1 5.7 69 2-70 247-323 (335)
8 KOG2087|consensus 99.1 4.2E-12 9.2E-17 85.8 -1.7 81 2-82 238-318 (363)
9 PF00001 7tm_1: 7 transmembran 99.0 9.5E-10 2.1E-14 70.8 4.6 52 2-53 205-257 (257)
10 PF10324 7TM_GPCR_Srw: Serpent 98.4 9.3E-07 2E-11 59.9 5.1 69 2-70 245-317 (318)
11 PF10320 7TM_GPCR_Srsx: Serpen 97.4 5.4E-05 1.2E-09 50.1 1.3 67 2-68 190-257 (257)
12 PF05462 Dicty_CAR: Slime mold 97.1 0.0045 9.7E-08 42.2 7.3 63 5-70 208-270 (303)
13 PF11970 Git3_C: G protein-cou 97.0 0.001 2.2E-08 36.1 3.3 53 6-58 19-72 (76)
14 PF10323 7TM_GPCR_Srv: Serpent 96.5 0.011 2.5E-07 39.7 5.9 37 34-70 247-283 (283)
15 PF05296 TAS2R: Mammalian tast 96.3 0.016 3.5E-07 39.4 5.8 67 4-70 235-301 (303)
16 PF10321 7TM_GPCR_Srt: Serpent 95.4 0.02 4.3E-07 39.3 3.3 39 31-69 268-306 (313)
17 PF02101 Ocular_alb: Ocular al 93.9 0.1 2.3E-06 36.6 3.8 20 2-21 247-266 (405)
18 PF10317 7TM_GPCR_Srd: Serpent 90.6 0.45 9.7E-06 32.2 3.7 55 10-66 238-292 (292)
19 PF10318 7TM_GPCR_Srh: Serpent 89.7 1.4 3.1E-05 29.7 5.6 60 8-70 243-302 (302)
20 KOG4564|consensus 87.7 0.95 2.1E-05 33.0 3.8 31 41-71 390-420 (473)
21 PF10328 7TM_GPCR_Srx: Serpent 80.8 1 2.2E-05 30.0 1.5 24 44-67 249-272 (274)
22 PF10326 7TM_GPCR_Str: Serpent 77.2 0.26 5.5E-06 33.4 -2.3 55 8-65 253-307 (307)
23 PF10327 7TM_GPCR_Sri: Serpent 75.3 3 6.5E-05 28.5 2.5 55 7-63 248-302 (303)
24 KOG2575|consensus 67.2 3.2 6.9E-05 29.9 1.2 17 2-18 262-278 (510)
25 PF03125 Sre: C. elegans Sre G 66.8 42 0.00091 23.6 7.4 39 33-71 284-322 (365)
26 PF03402 V1R: Vomeronasal orga 54.8 19 0.00042 24.3 3.2 60 2-64 204-263 (265)
27 PHA02849 putative transmembran 49.2 22 0.00047 19.4 2.2 22 2-23 19-40 (82)
28 KOG4686|consensus 44.3 26 0.00057 24.7 2.6 20 2-21 270-289 (459)
29 PF10624 TraS: Plasmid conjuga 43.5 16 0.00035 22.1 1.3 49 4-52 30-80 (164)
30 PF05391 Lsm_interact: Lsm int 43.5 13 0.00027 14.9 0.6 9 56-64 11-19 (21)
31 PHA02657 hypothetical protein; 43.1 31 0.00067 19.2 2.3 21 3-23 30-50 (95)
32 PF05393 Hum_adeno_E3A: Human 43.0 13 0.00028 20.8 0.8 10 4-13 47-56 (94)
33 KOG4193|consensus 42.2 46 0.00099 25.5 3.7 19 51-69 562-580 (610)
34 PHA02754 hypothetical protein; 40.5 30 0.00065 17.7 1.8 17 53-69 9-25 (67)
35 COG3821 Predicted membrane pro 38.9 16 0.00035 23.8 0.9 17 3-19 8-24 (234)
36 PF11036 YqgB: Virulence promo 36.5 14 0.00031 17.3 0.3 10 49-58 18-27 (43)
37 PF02118 Srg: Srg family chemo 35.6 80 0.0017 20.8 3.9 29 35-63 246-274 (275)
38 PF04505 Dispanin: Interferon- 35.3 24 0.00052 19.3 1.1 22 4-25 22-43 (82)
39 PF03155 Alg6_Alg8: ALG6, ALG8 32.6 29 0.00063 25.6 1.5 15 2-16 228-242 (469)
40 PF10319 7TM_GPCR_Srj: Serpent 31.3 78 0.0017 22.1 3.3 53 9-63 257-309 (310)
41 PF10842 DUF2642: Protein of u 31.2 28 0.00061 18.3 0.9 11 44-54 4-14 (66)
42 PF05399 EVI2A: Ectropic viral 29.9 20 0.00043 23.5 0.2 10 2-11 135-144 (227)
43 PHA03169 hypothetical protein; 28.8 19 0.00041 25.7 0.0 59 9-71 326-389 (413)
44 PF11014 DUF2852: Protein of u 28.8 62 0.0013 19.1 2.1 8 3-10 14-21 (115)
45 TIGR01096 3A0103s03R lysine-ar 26.3 39 0.00084 21.7 1.2 19 3-21 3-21 (250)
46 KOG3827|consensus 25.3 16 0.00034 26.2 -0.9 20 2-21 67-86 (400)
47 PF11587 Prion_bPrPp: Major pr 24.4 46 0.00099 14.5 0.8 13 10-22 7-19 (29)
48 KOG1735|consensus 24.3 8 0.00017 23.7 -2.1 12 7-18 87-98 (146)
49 COG4818 Predicted membrane pro 24.2 1E+02 0.0022 17.6 2.4 12 5-16 47-58 (105)
50 PF02295 z-alpha: Adenosine de 24.1 51 0.0011 17.2 1.1 13 45-57 34-46 (66)
51 PF04628 Sedlin_N: Sedlin, N-t 24.1 44 0.00096 19.8 1.0 29 41-69 100-131 (132)
52 PHA02132 hypothetical protein 23.7 1.2E+02 0.0026 16.2 2.5 20 6-25 55-74 (86)
53 PF07746 LigA: Aromatic-ring-o 23.0 1.1E+02 0.0024 17.0 2.4 20 48-67 1-20 (88)
54 PF13153 DUF3985: Protein of u 22.4 1E+02 0.0022 14.4 1.8 19 3-21 9-27 (44)
55 PRK13378 protocatechuate 4,5-d 22.4 1.2E+02 0.0026 17.9 2.5 20 47-66 26-45 (117)
56 PF11601 Shal-type: Shal-type 22.2 44 0.00094 14.3 0.5 13 10-22 4-16 (28)
57 PF04654 DUF599: Protein of un 22.1 82 0.0018 20.6 2.0 24 3-26 2-25 (216)
58 cd07925 LigA_like_1 The A subu 21.9 1.3E+02 0.0027 17.5 2.5 20 47-66 15-34 (106)
59 PRK06099 F0F1 ATP synthase sub 21.3 1.1E+02 0.0024 18.3 2.3 19 6-24 43-61 (126)
60 PRK06761 hypothetical protein; 21.3 15 0.00033 25.0 -1.5 32 38-70 172-203 (282)
61 PF07325 Curto_V2: Curtovirus 21.1 93 0.002 18.1 1.8 12 59-70 52-63 (126)
62 TIGR02792 PCA_ligA protocatech 20.8 1.3E+02 0.0028 17.8 2.5 20 47-66 20-39 (117)
63 PF00375 SDF: Sodium:dicarboxy 20.6 3.3E+02 0.0071 19.4 5.3 66 4-70 175-248 (390)
64 PF14752 RBP_receptor: Retinol 20.4 1.6E+02 0.0035 22.8 3.5 19 3-21 170-188 (617)
No 1
>PHA03234 DNA packaging protein UL33; Provisional
Probab=99.81 E-value=5.3e-20 Score=125.28 Aligned_cols=76 Identities=14% Similarity=0.162 Sum_probs=58.7
Q ss_pred chhhhhHhhchhhHHHHHHHHHhCC----CCc----cchhHHHHHHHHhhcccchhHHHHHHhcHHHHHHHHHHHHhhhh
Q psy11836 2 ALLVLINFACWAPVTFFALTAALGY----PLI----SVTKSKILLVFFYPINSCFNPYLYALLTKHYRRDLVLTLARIGI 73 (112)
Q Consensus 2 ~~iv~~F~icw~Py~i~~l~~~~~~----~~~----~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~~~~ 73 (112)
++++++|++||+||+++.++..+.. ... .......++.+++++|||+||+||++.+++||+++++.+++..+
T Consensus 240 ~~vv~vF~iCWlPy~iv~l~~~~~~~~~~~~c~~~~~~~~~~~v~~~La~~nsclNPiIY~f~~~~FR~~~~~~~~~~~~ 319 (338)
T PHA03234 240 RILILSFLCIQIPNIAILICEIAFLYIANNSCFGLAQREILQIIIRLMPEIHCFSNPLVYAFTGGDFRLRFTACFQDFFK 319 (338)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHhh
Confidence 5789999999999999987654311 111 12234567888999999999999999999999999999987655
Q ss_pred hhhc
Q psy11836 74 CQER 77 (112)
Q Consensus 74 ~~~~ 77 (112)
|...
T Consensus 320 ~~~~ 323 (338)
T PHA03234 320 CNLC 323 (338)
T ss_pred hhhc
Confidence 5533
No 2
>KOG4219|consensus
Probab=99.79 E-value=7.3e-20 Score=124.19 Aligned_cols=77 Identities=17% Similarity=0.440 Sum_probs=63.1
Q ss_pred CchhhhhHhhchhhHHHHHHHHHhCCCCc---cchhHHHHHHHHhhcccchhHHHHHHhcHHHHHHHHHHHHhhhhhhhc
Q psy11836 1 MALLVLINFACWAPVTFFALTAALGYPLI---SVTKSKILLVFFYPINSCFNPYLYALLTKHYRRDLVLTLARIGICQER 77 (112)
Q Consensus 1 l~~iv~~F~icw~Py~i~~l~~~~~~~~~---~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~~~~~~~~ 77 (112)
+++||+.|.+||+|||++.+......+.. -....+....||+++|+|+||+||+++|++||.++++.++++......
T Consensus 263 liiVV~~FaicWlPyh~y~il~~~~~~i~~~k~i~~vyl~~~WLaMSst~yNPiIY~~lN~Rfr~gf~~~fr~cp~v~~~ 342 (423)
T KOG4219|consen 263 LIIVVVIFAICWLPYHIYFILNATNPEINRKKFIQQVYLAIYWLAMSSTCYNPIIYCFLNKRFRGGFRRAFRWCPFVKGT 342 (423)
T ss_pred HHHHHHHHHHhccChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccHhhhhhHHHHHHHHhhhhheeeeeccc
Confidence 46789999999999999999876544322 235567788999999999999999999999999999999876533333
No 3
>PHA03235 DNA packaging protein UL33; Provisional
Probab=99.79 E-value=5.9e-19 Score=122.71 Aligned_cols=70 Identities=14% Similarity=0.163 Sum_probs=55.0
Q ss_pred chhhhhHhhchhhHHHHHHHHHhCCC----Cc----cchhHHHHHHHHhhcccchhHHHHHHhcHHHHHHHHHHHHhh
Q psy11836 2 ALLVLINFACWAPVTFFALTAALGYP----LI----SVTKSKILLVFFYPINSCFNPYLYALLTKHYRRDLVLTLARI 71 (112)
Q Consensus 2 ~~iv~~F~icw~Py~i~~l~~~~~~~----~~----~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~~ 71 (112)
++++++|++||+||+++.++..+... .. .......+..+++++|||+||+||++++++||+++++.+++.
T Consensus 247 ~iivv~F~iCWlPy~v~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~La~~ns~lNPiIY~~~~~~FRk~~~~~l~~~ 324 (409)
T PHA03235 247 CILLLSFLCLQTPFVAIMIFDSYATLIWPSDCEHINLRDAVSTLSRLVPNLHCLLNPILYAFLGNDFLKRFRQCFRGE 324 (409)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHHHHHHHHHHhHhHHHHHHhhHHHHHHHHHHHhhh
Confidence 45677899999999999887654221 10 122345678889999999999999999999999999988754
No 4
>PHA02834 chemokine receptor-like protein; Provisional
Probab=99.73 E-value=6.9e-18 Score=114.27 Aligned_cols=69 Identities=17% Similarity=0.376 Sum_probs=54.1
Q ss_pred chhhhhHhhchhhHHHHHHHHHhCCCCc---c------chhHHHHHHHHhhcccchhHHHHHHhcHHHHHHHHHHHHh
Q psy11836 2 ALLVLINFACWAPVTFFALTAALGYPLI---S------VTKSKILLVFFYPINSCFNPYLYALLTKHYRRDLVLTLAR 70 (112)
Q Consensus 2 ~~iv~~F~icw~Py~i~~l~~~~~~~~~---~------~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~ 70 (112)
++++++|++||+||+++.++..+..... . ......+..+++++|||+||+||++++++||+++++++++
T Consensus 232 ~~vv~~F~icWlPy~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ns~iNPiIY~~~~~~fR~~~~~~~~~ 309 (323)
T PHA02834 232 LTVVTFTVVFWVPFNIVLFINSLQSVGLIDIGCYHFKKIVYSIDIAELISFVHCCVNPIIYAFVGKNFKKVFKNMFCR 309 (323)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHhhccccHHHHHHhcHHHHHHHHHHHHh
Confidence 5688999999999999988765532110 0 0112346778999999999999999999999999998864
No 5
>PHA02638 CC chemokine receptor-like protein; Provisional
Probab=99.67 E-value=1.3e-16 Score=111.29 Aligned_cols=71 Identities=21% Similarity=0.552 Sum_probs=56.2
Q ss_pred CchhhhhHhhchhhHHHHHHHHHhCCC----------C---ccchhHHHHHHHHhhcccchhHHHHHHhcHHHHHHHHHH
Q psy11836 1 MALLVLINFACWAPVTFFALTAALGYP----------L---ISVTKSKILLVFFYPINSCFNPYLYALLTKHYRRDLVLT 67 (112)
Q Consensus 1 l~~iv~~F~icw~Py~i~~l~~~~~~~----------~---~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~ 67 (112)
+++++++|++||+||+++.++..+... . ........+...++++|||+||+||++.+++||++++++
T Consensus 315 i~~ivi~f~lcW~Py~i~~ll~~~~~~~~~~~~~~~~~c~~~~l~~~~~vt~~la~~~sclNPiIY~f~~~~FR~~l~~~ 394 (417)
T PHA02638 315 VSIIIICSLICWIPLNIVILFATMYSFKGFNSIISEHICGFIKLGYAMMLAEAISLTHCCINPLIYTLIGENFRMHLLMI 394 (417)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhhccccccccccccHHHHHHHHHHHHHHHHHHHhhhHHHHHHhCHHHHHHHHHH
Confidence 357899999999999999888765311 0 012334556778999999999999999999999999998
Q ss_pred HHhh
Q psy11836 68 LARI 71 (112)
Q Consensus 68 ~~~~ 71 (112)
+++.
T Consensus 395 ~~~~ 398 (417)
T PHA02638 395 FRNI 398 (417)
T ss_pred HHHh
Confidence 8653
No 6
>KOG4220|consensus
Probab=99.66 E-value=2.7e-17 Score=112.30 Aligned_cols=68 Identities=21% Similarity=0.294 Sum_probs=61.4
Q ss_pred chhhhhHhhchhhHHHHHHHHHhCCCCccchhHHHHHHHHhhcccchhHHHHHHhcHHHHHHHHHHHHh
Q psy11836 2 ALLVLINFACWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKHYRRDLVLTLAR 70 (112)
Q Consensus 2 ~~iv~~F~icw~Py~i~~l~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~ 70 (112)
..|+++|++||+||.|+.++..|-..- -+..++.+.++|.|+||-+||++|++.|+.||+.+++++.|
T Consensus 420 sAILlAFIiTWtPYNImVlv~tFC~~C-iP~tlW~~gYwLCYINSTiNP~CYALCNatFrkTfk~lL~C 487 (503)
T KOG4220|consen 420 SAILLAFILTWTPYNIMVLVNTFCKNC-IPETLWTFGYWLCYINSTINPLCYALCNATFRKTFKRLLLC 487 (503)
T ss_pred HHHHHHHHHHcccceeeeehHhhcccc-cchhHhhhhhheeeecccccHHHHHHHhHHHHHHHHHhhee
Confidence 568999999999999999998775544 45788899999999999999999999999999999999964
No 7
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional
Probab=99.54 E-value=9.7e-15 Score=99.13 Aligned_cols=69 Identities=14% Similarity=0.319 Sum_probs=53.9
Q ss_pred chhhhhHhhchhhHHHHHHHHHhCC----CCc----cchhHHHHHHHHhhcccchhHHHHHHhcHHHHHHHHHHHHh
Q psy11836 2 ALLVLINFACWAPVTFFALTAALGY----PLI----SVTKSKILLVFFYPINSCFNPYLYALLTKHYRRDLVLTLAR 70 (112)
Q Consensus 2 ~~iv~~F~icw~Py~i~~l~~~~~~----~~~----~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~ 70 (112)
++++++|++||+||++..++..... ... ..+....+..+++.+||++||+||++++++||+++++.++.
T Consensus 247 ~~iv~~f~i~w~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ns~~NPiIY~~~~~~fr~~~~~~~~~ 323 (335)
T PHA03087 247 LIIVILFVIFWLPFNVSVFVYSLHILHFKSGCKAVKYIQYALHVTEIISLSHCCINPLIYAFVSEFFNKHKKKSLKL 323 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhHHHHcCHHHHHHHHHHHHH
Confidence 5788999999999999887654321 110 12334456778899999999999999999999999999964
No 8
>KOG2087|consensus
Probab=99.12 E-value=4.2e-12 Score=85.79 Aligned_cols=81 Identities=51% Similarity=1.062 Sum_probs=66.0
Q ss_pred chhhhhHhhchhhHHHHHHHHHhCCCCccchhHHHHHHHHhhcccchhHHHHHHhcHHHHHHHHHHHHhhhhhhhccccc
Q psy11836 2 ALLVLINFACWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKHYRRDLVLTLARIGICQERAHKY 81 (112)
Q Consensus 2 ~~iv~~F~icw~Py~i~~l~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~~~~~~~~~~~~ 81 (112)
..++..=++||.|.+.+.+...++.+.........+..++.-+|||+||++|++.++.||+.++.++.+...++.+.+..
T Consensus 238 a~LvfTd~icw~Pi~f~~~~al~~~~li~~~~sk~llv~flPlns~~NP~LYa~fT~~fk~d~~~l~~k~~~~k~~~~~~ 317 (363)
T KOG2087|consen 238 AFLVFTDCICWCPIAFFKFSALIGVELISVSYSKWLLVFFLPLNSCLNPFLYAFFTPVFKEDLFLLLSKVGLCKNRASKY 317 (363)
T ss_pred eEEEEccccccCchheeeeHHhcCCcccChhhceeEEEEEEEcccccCchhHHHcCHHHHHHHHHHHhhcchhhhHHHHh
Confidence 34556667999999999999999988877777766777777799999999999999999999999998766555554444
Q ss_pred c
Q psy11836 82 R 82 (112)
Q Consensus 82 ~ 82 (112)
+
T Consensus 318 ~ 318 (363)
T KOG2087|consen 318 K 318 (363)
T ss_pred c
Confidence 3
No 9
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=98.97 E-value=9.5e-10 Score=70.82 Aligned_cols=52 Identities=25% Similarity=0.526 Sum_probs=44.2
Q ss_pred chhhhhHhhchhhHHHHHHHHHhCCCCc-cchhHHHHHHHHhhcccchhHHHH
Q psy11836 2 ALLVLINFACWAPVTFFALTAALGYPLI-SVTKSKILLVFFYPINSCFNPYLY 53 (112)
Q Consensus 2 ~~iv~~F~icw~Py~i~~l~~~~~~~~~-~~~~~~~~~~~l~~~ns~~NPiiY 53 (112)
++++++|++||+|+.+..++........ .......+..+++++||++||+||
T Consensus 205 ~~i~~~f~~~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~s~~nP~iY 257 (257)
T PF00001_consen 205 LIIVLVFLLCWLPYFILSLLSVFSPSSSLISSILFYISYFLAFLNSCLNPIIY 257 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSTSTCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccCCceeHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhhCcEEC
Confidence 4678899999999999999988866552 356667888899999999999999
No 10
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].
Probab=98.35 E-value=9.3e-07 Score=59.87 Aligned_cols=69 Identities=12% Similarity=0.204 Sum_probs=55.2
Q ss_pred chhhhhHhhchhhHHHHHHHHHhCCCC----ccchhHHHHHHHHhhcccchhHHHHHHhcHHHHHHHHHHHHh
Q psy11836 2 ALLVLINFACWAPVTFFALTAALGYPL----ISVTKSKILLVFFYPINSCFNPYLYALLTKHYRRDLVLTLAR 70 (112)
Q Consensus 2 ~~iv~~F~icw~Py~i~~l~~~~~~~~----~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~ 70 (112)
+++++.|+++=+|+-+..++....... ........+...+..+|++.|++||.+++.+||+++++++++
T Consensus 245 ~~~ti~f~i~e~p~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~h~~ic~~mSsqYR~t~~~~f~~ 317 (318)
T PF10324_consen 245 LFMTISFLISELPQGIIFLLESFFEEDSGLIFIIIQLSIIFNILITINSSIHFFICCFMSSQYRKTVKKLFGC 317 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhHHHhhhhhhHHHHHHHHHHhcc
Confidence 467789999999999999997752221 112344556777888999999999999999999999999964
No 11
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=97.45 E-value=5.4e-05 Score=50.13 Aligned_cols=67 Identities=15% Similarity=0.222 Sum_probs=48.8
Q ss_pred chhhhhHhhchhhHHHHHHHHHh-CCCCccchhHHHHHHHHhhcccchhHHHHHHhcHHHHHHHHHHH
Q psy11836 2 ALLVLINFACWAPVTFFALTAAL-GYPLISVTKSKILLVFFYPINSCFNPYLYALLTKHYRRDLVLTL 68 (112)
Q Consensus 2 ~~iv~~F~icw~Py~i~~l~~~~-~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~ 68 (112)
.+++++|+..|.=-.+...+... +.+.........-..++...|.+.|-++|.+.|+|||+++++++
T Consensus 190 ~v~v~i~i~~w~~s~~~~~v~~~~~~~~~~~~~i~~~~~i~v~~~~s~~ffV~~~~S~EYR~af~~~~ 257 (257)
T PF10320_consen 190 KVTVIIFIFSWFLSQIINTVSLALGLDGETIAIIQMYAGIFVNISYSQNFFVYYWRSSEYRKAFRELF 257 (257)
T ss_pred hhheeeeeHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHheEEEEcCHHHHHHHHHhC
Confidence 46788889999877777665443 32221122234445678899999999999999999999999863
No 12
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor
Probab=97.06 E-value=0.0045 Score=42.19 Aligned_cols=63 Identities=24% Similarity=0.283 Sum_probs=47.7
Q ss_pred hhhHhhchhhHHHHHHHHHhCCCCccchhHHHHHHHHhhcccchhHHHHHHhcHHHHHHHHHHHHh
Q psy11836 5 VLINFACWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKHYRRDLVLTLAR 70 (112)
Q Consensus 5 v~~F~icw~Py~i~~l~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~ 70 (112)
.++|++||.|-.+-.+....+.. +.....+-..++-+.=.+|.++|++-++-.++.+...+.+
T Consensus 208 p~ifiicw~fa~INRI~~~~~~~---~~~l~~Lh~~~s~lqGf~nsivy~~n~~~~~~~~~~~~~~ 270 (303)
T PF05462_consen 208 PLIFIICWIFATINRIYNFIGKN---PFWLSVLHVGFSPLQGFFNSIVYGYNNSLMWRYLGSKILC 270 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC---chHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 47899999999999998877532 2344444445666677899999999999999988776643
No 13
>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This family is the conserved C-terminal domain of the member proteins.
Probab=97.04 E-value=0.001 Score=36.12 Aligned_cols=53 Identities=11% Similarity=0.150 Sum_probs=39.6
Q ss_pred hhHhhchh-hHHHHHHHHHhCCCCccchhHHHHHHHHhhcccchhHHHHHHhcH
Q psy11836 6 LINFACWA-PVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTK 58 (112)
Q Consensus 6 ~~F~icw~-Py~i~~l~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~ 58 (112)
++|+++|+ |+.+-.+....+....+..+...++.++..+|..+|-++|++.-+
T Consensus 19 ~~Yi~lwlfP~~~~~~~~~~~~~~~p~~~l~~i~~~~~~~~G~VD~lvf~~~er 72 (76)
T PF11970_consen 19 LVYIVLWLFPFAAHRMQYMYEIGHGPSFWLFCIAGFMQPSQGFVDCLVFTLRER 72 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHccCHHHhhheeeecc
Confidence 57999999 988887776644333344566667777777999999999987654
No 14
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=96.49 E-value=0.011 Score=39.72 Aligned_cols=37 Identities=16% Similarity=0.316 Sum_probs=30.7
Q ss_pred HHHHHHHHhhcccchhHHHHHHhcHHHHHHHHHHHHh
Q psy11836 34 SKILLVFFYPINSCFNPYLYALLTKHYRRDLVLTLAR 70 (112)
Q Consensus 34 ~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~ 70 (112)
.+.+-.++.-..|.+||+.--+.|+++|+++++.++|
T Consensus 247 ~r~~y~~~~~~~s~inP~~LLi~n~~lr~~~~~~~~~ 283 (283)
T PF10323_consen 247 LRAFYPILNGLLSFINPWMLLIFNKDLRKQVRRMLKC 283 (283)
T ss_pred HHHHHHHHHHHHHhhhhHHhhhccHHHHHHHHHHcCC
Confidence 3335556777889999999999999999999998863
No 15
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane
Probab=96.32 E-value=0.016 Score=39.44 Aligned_cols=67 Identities=7% Similarity=-0.024 Sum_probs=50.0
Q ss_pred hhhhHhhchhhHHHHHHHHHhCCCCccchhHHHHHHHHhhcccchhHHHHHHhcHHHHHHHHHHHHh
Q psy11836 4 LVLINFACWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKHYRRDLVLTLAR 70 (112)
Q Consensus 4 iv~~F~icw~Py~i~~l~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~ 70 (112)
+++.|++-+..|.+..++...............+...+.++.++..|+|-.+.|+++|+++++.+.+
T Consensus 235 ~~~sfl~ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~yps~hs~iLIlgn~KLr~~~~~il~~ 301 (303)
T PF05296_consen 235 TMISFLILYIIYFLSLILSFLSFFFPENSIWFWVCEIIIALYPSGHSIILILGNPKLRQALLKILWC 301 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhh
Confidence 4567778888888776664332221122445567777888999999999999999999999999864
No 16
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []. Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=95.42 E-value=0.02 Score=39.28 Aligned_cols=39 Identities=15% Similarity=0.220 Sum_probs=32.9
Q ss_pred chhHHHHHHHHhhcccchhHHHHHHhcHHHHHHHHHHHH
Q psy11836 31 VTKSKILLVFFYPINSCFNPYLYALLTKHYRRDLVLTLA 69 (112)
Q Consensus 31 ~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~ 69 (112)
+++...+..+.=-.++..+|+||-.+|+..|+++++.++
T Consensus 268 p~~~i~~~~~~Wql~~g~~~iIYl~lNrtIR~~~~k~~~ 306 (313)
T PF10321_consen 268 PPWLIIIGQISWQLSHGCPPIIYLTLNRTIRNSVLKMLG 306 (313)
T ss_pred cHHHHHHHHHHHhccCCccceEEEEECHHHHHHHHHHHc
Confidence 355556666666789999999999999999999999995
No 17
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes. A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane
Probab=93.86 E-value=0.1 Score=36.64 Aligned_cols=20 Identities=20% Similarity=0.544 Sum_probs=16.4
Q ss_pred chhhhhHhhchhhHHHHHHH
Q psy11836 2 ALLVLINFACWAPVTFFALT 21 (112)
Q Consensus 2 ~~iv~~F~icw~Py~i~~l~ 21 (112)
+.|+++|.+||+|..+=-++
T Consensus 247 f~I~lVF~iCWlpNIINg~L 266 (405)
T PF02101_consen 247 FKIMLVFYICWLPNIINGSL 266 (405)
T ss_pred HHHHHHHHHHhhhhhHhHHH
Confidence 45899999999999886554
No 18
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].
Probab=90.64 E-value=0.45 Score=32.15 Aligned_cols=55 Identities=9% Similarity=0.190 Sum_probs=38.3
Q ss_pred hchhhHHHHHHHHHhCCCCccchhHHHHHHHHhhcccchhHHHHHHhcHHHHHHHHH
Q psy11836 10 ACWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKHYRRDLVL 66 (112)
Q Consensus 10 icw~Py~i~~l~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~ 66 (112)
++..|-.+..++..++... ......+...++.+-+.+||+++.+.=+.||++++|
T Consensus 238 ~~~~p~~~~~~~~~~~~~~--~~~~e~~~~~~~~~~~~~~P~itl~fv~PYR~~i~r 292 (292)
T PF10317_consen 238 FFYIPGVIIYFLSQFTGYE--HPFLEYLIFMLASLPPLIDPLITLYFVRPYRKAILR 292 (292)
T ss_pred HHHHHHHHHHHHHHHhccc--cHHHHHHHHHHHHHHHHhchHhheeeeHhHHHHhcC
Confidence 3444444444544444432 355566666677788999999999999999999864
No 19
>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srh is part of the Str superfamily of chemoreceptors [].
Probab=89.74 E-value=1.4 Score=29.71 Aligned_cols=60 Identities=15% Similarity=0.279 Sum_probs=44.5
Q ss_pred HhhchhhHHHHHHHHHhCCCCccchhHHHHHHHHhhcccchhHHHHHHhcHHHHHHHHHHHHh
Q psy11836 8 NFACWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKHYRRDLVLTLAR 70 (112)
Q Consensus 8 F~icw~Py~i~~l~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~ 70 (112)
+++.-.|..++.+....+... +....+..++...+..+.-++..+.++.+|+.++++++|
T Consensus 243 ~~~l~~P~~~~~~~~~~~~~~---q~~~n~~~~~~~~HG~~sti~mi~~~~pYR~~~~~~~~~ 302 (302)
T PF10318_consen 243 FIFLFIPLIYFIISIIFGYYN---QALNNISFIIISLHGIASTIVMILVHKPYRKFLLSLFRC 302 (302)
T ss_pred HHHHhhhHHHHHHHHhccccc---cccchHHHHHHHhccHHHHHHHhhccHHHHHHHHHHhcC
Confidence 345566888887766655433 334445556666899999999999999999999999864
No 20
>KOG4564|consensus
Probab=87.74 E-value=0.95 Score=32.95 Aligned_cols=31 Identities=19% Similarity=0.297 Sum_probs=24.5
Q ss_pred HhhcccchhHHHHHHhcHHHHHHHHHHHHhh
Q psy11836 41 FYPINSCFNPYLYALLTKHYRRDLVLTLARI 71 (112)
Q Consensus 41 l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~~ 71 (112)
|..+.-.+=-++|+|.|.++|.++||.+.+.
T Consensus 390 L~SfQGf~VAvlYCFlN~EVq~elrr~W~r~ 420 (473)
T KOG4564|consen 390 LGSFQGFFVAVLYCFLNGEVQAELRRKWSRW 420 (473)
T ss_pred HHhccchheehheeecCHHHHHHHHHHHHhc
Confidence 4444445567899999999999999999764
No 21
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=80.81 E-value=1 Score=30.00 Aligned_cols=24 Identities=8% Similarity=0.261 Sum_probs=20.1
Q ss_pred cccchhHHHHHHhcHHHHHHHHHH
Q psy11836 44 INSCFNPYLYALLTKHYRRDLVLT 67 (112)
Q Consensus 44 ~ns~~NPiiY~~~~~~fR~~~~~~ 67 (112)
+.=++|++|+...|+|+|+.+++.
T Consensus 249 ~~h~~DG~i~l~fN~~~r~~~~~~ 272 (274)
T PF10328_consen 249 LVHALDGLIMLIFNSEIRRKIRKK 272 (274)
T ss_pred HHHHhcceeEeEEcHHHHHHHHhc
Confidence 334579999999999999998764
No 22
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class r (Str) from the Str superfamily [, ]. Almost a quarter (22.5%) of str and srj family genes and pseudogenes in C. elegans appear to have been newly formed by gene duplications since the species split [].
Probab=77.25 E-value=0.26 Score=33.37 Aligned_cols=55 Identities=15% Similarity=0.283 Sum_probs=37.3
Q ss_pred HhhchhhHHHHHHHHHhCCCCccchhHHHHHHHHhhcccchhHHHHHHhcHHHHHHHH
Q psy11836 8 NFACWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKHYRRDLV 65 (112)
Q Consensus 8 F~icw~Py~i~~l~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~ 65 (112)
++..+.|..++.+.-.++-+. .....+...+..+..++||++-.+.-+|||++++
T Consensus 253 ~i~~~~P~~~~~~~p~~~i~~---~~~~~~~~~~~~~yP~iDpl~~i~~ik~yR~~i~ 307 (307)
T PF10326_consen 253 FIFMYIPVFIVFILPFFGIDL---GFFSNIISILISLYPAIDPLPVIFIIKDYRKAIK 307 (307)
T ss_pred heeeecchhheeeeeccCCCC---CccccHhhhhEEEEeehhhheeeEeeHHHHHhhC
Confidence 345677877776665554332 2222233344448999999999999999999874
No 23
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents Sri, which is part of the Str superfamily of chemoreceptors.
Probab=75.33 E-value=3 Score=28.49 Aligned_cols=55 Identities=15% Similarity=0.224 Sum_probs=38.7
Q ss_pred hHhhchhhHHHHHHHHHhCCCCccchhHHHHHHHHhhcccchhHHHHHHhcHHHHHH
Q psy11836 7 INFACWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKHYRRD 63 (112)
Q Consensus 7 ~F~icw~Py~i~~l~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~ 63 (112)
+-.+|-+|-.++.+....+.+.. +.......+...++|.+|-++-.+.++.||+-
T Consensus 248 ~~~i~~~P~~~~~~~~~~~~~~~--q~i~~~~~~~f~~HS~~n~ivli~t~ppYR~f 302 (303)
T PF10327_consen 248 TSSICILPPFIFVVVVIFEFEDA--QVISEICLAIFSSHSSVNMIVLIITTPPYRKF 302 (303)
T ss_pred HHHHHHHHHHHhhhhheecCCCc--HHHHHHHHHHHHHhhHhhheeeeEcCcchhhc
Confidence 34566689888877766654432 33334444455589999999999999999984
No 24
>KOG2575|consensus
Probab=67.23 E-value=3.2 Score=29.91 Aligned_cols=17 Identities=18% Similarity=0.227 Sum_probs=14.3
Q ss_pred chhhhhHhhchhhHHHH
Q psy11836 2 ALLVLINFACWAPVTFF 18 (112)
Q Consensus 2 ~~iv~~F~icw~Py~i~ 18 (112)
+++++.|+++|.|+...
T Consensus 262 ~~Vv~TF~iiw~P~~~~ 278 (510)
T KOG2575|consen 262 LAVVGTFVIIWLPFLLS 278 (510)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 36889999999999765
No 25
>PF03125 Sre: C. elegans Sre G protein-coupled chemoreceptor; InterPro: IPR004151 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class e (Sre) from the Sra superfamily []. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=66.83 E-value=42 Score=23.60 Aligned_cols=39 Identities=10% Similarity=0.130 Sum_probs=28.6
Q ss_pred hHHHHHHHHhhcccchhHHHHHHhcHHHHHHHHHHHHhh
Q psy11836 33 KSKILLVFFYPINSCFNPYLYALLTKHYRRDLVLTLARI 71 (112)
Q Consensus 33 ~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~~ 71 (112)
....+......+++.+=|.+-.+..+..|+++++.++..
T Consensus 284 ~~~~~~e~~i~l~~~~i~~~~i~s~~~wrk~f~~~~~~~ 322 (365)
T PF03125_consen 284 ILNHIFENCIFLNPIFICPVIIFSVPSWRKEFKRSFPKI 322 (365)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHcCHHHHHHHHHhhhhh
Confidence 334444455667777777777888999999999988753
No 26
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=54.76 E-value=19 Score=24.35 Aligned_cols=60 Identities=13% Similarity=0.050 Sum_probs=40.0
Q ss_pred chhhhhHhhchhhHHHHHHHHHhCCCCccchhHHHHHHHHhhcccchhHHHHHHhcHHHHHHH
Q psy11836 2 ALLVLINFACWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKHYRRDL 64 (112)
Q Consensus 2 ~~iv~~F~icw~Py~i~~l~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~ 64 (112)
++.|..|+..+.--.++.++...... .+....+..+++..-+.+-|++-.-.+++..+-+
T Consensus 204 LlLVs~FV~fY~l~si~~~~~~~~~~---~~~~~~~~~~ls~cfptisPfvLI~~d~~i~~~~ 263 (265)
T PF03402_consen 204 LLLVSTFVSFYGLSSILFIYLTSFKN---SPWLLNISVFLSSCFPTISPFVLISSDKRIIKFL 263 (265)
T ss_pred eeHHHHHHHHHhHHHHHHHHHHHhcC---CcceeEHHHHHhHHhHhhChHHhhccCchHHHHh
Confidence 45677788888777776554332222 1233345667787889999999998888777654
No 27
>PHA02849 putative transmembrane protein; Provisional
Probab=49.22 E-value=22 Score=19.38 Aligned_cols=22 Identities=14% Similarity=0.232 Sum_probs=14.9
Q ss_pred chhhhhHhhchhhHHHHHHHHH
Q psy11836 2 ALLVLINFACWAPVTFFALTAA 23 (112)
Q Consensus 2 ~~iv~~F~icw~Py~i~~l~~~ 23 (112)
++.+.++++|.+-|.++.+..+
T Consensus 19 vi~v~v~vI~i~~flLlyLvkw 40 (82)
T PHA02849 19 VILVFVLVISFLAFMLLYLIKW 40 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667778877777777654
No 28
>KOG4686|consensus
Probab=44.30 E-value=26 Score=24.72 Aligned_cols=20 Identities=10% Similarity=0.517 Sum_probs=15.9
Q ss_pred chhhhhHhhchhhHHHHHHH
Q psy11836 2 ALLVLINFACWAPVTFFALT 21 (112)
Q Consensus 2 ~~iv~~F~icw~Py~i~~l~ 21 (112)
.+|.+.|.+.|.|+..+.=+
T Consensus 270 ~iicv~yyva~fPFi~lg~~ 289 (459)
T KOG4686|consen 270 VIICVLYYVAWFPFITLGPM 289 (459)
T ss_pred HHHHHHHHHHHHHHhhhhHH
Confidence 46788899999999887443
No 29
>PF10624 TraS: Plasmid conjugative transfer entry exclusion protein TraS; InterPro: IPR018898 Entry exclusion (Eex) is a process which prevents redundant transfer of DNA between donor cells. TraS is a protein involved in Eex. It blocks redundant conjugative DNA synthesis and transport between donor cells, and it is suggested that TraS interferes with a signalling pathway that is required to trigger DNA transfer []. TraS on the recipient cell is known to form an interaction with TraG on the donor cell [].
Probab=43.51 E-value=16 Score=22.13 Aligned_cols=49 Identities=18% Similarity=0.285 Sum_probs=23.4
Q ss_pred hhhhHhhchhhHHHHHHHHHhCCCCccchh--HHHHHHHHhhcccchhHHH
Q psy11836 4 LVLINFACWAPVTFFALTAALGYPLISVTK--SKILLVFFYPINSCFNPYL 52 (112)
Q Consensus 4 iv~~F~icw~Py~i~~l~~~~~~~~~~~~~--~~~~~~~l~~~ns~~NPii 52 (112)
.++.|.+.|.-.++..+...-.+...+.+. ..-+-++++-+.|.+||++
T Consensus 30 fil~f~~lWqglFiwlF~qIrkKr~v~defkfsk~vwyi~mpVcsllsPll 80 (164)
T PF10624_consen 30 FILLFIVLWQGLFIWLFIQIRKKRNVSDEFKFSKGVWYILMPVCSLLSPLL 80 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcchhccccceEEeeecHHHHHhHHH
Confidence 455666677666666555543332221110 0111123444667777765
No 30
>PF05391 Lsm_interact: Lsm interaction motif; InterPro: IPR008669 This short motif is found at the C terminus of Prp24 proteins and probably interacts with the Lsm proteins to promote U4/U6 formation [].
Probab=43.46 E-value=13 Score=14.92 Aligned_cols=9 Identities=11% Similarity=0.401 Sum_probs=6.1
Q ss_pred hcHHHHHHH
Q psy11836 56 LTKHYRRDL 64 (112)
Q Consensus 56 ~~~~fR~~~ 64 (112)
.|.|||+-|
T Consensus 11 SNddFrkmf 19 (21)
T PF05391_consen 11 SNDDFRKMF 19 (21)
T ss_pred chHHHHHHH
Confidence 467888755
No 31
>PHA02657 hypothetical protein; Provisional
Probab=43.15 E-value=31 Score=19.17 Aligned_cols=21 Identities=14% Similarity=0.181 Sum_probs=13.6
Q ss_pred hhhhhHhhchhhHHHHHHHHH
Q psy11836 3 LLVLINFACWAPVTFFALTAA 23 (112)
Q Consensus 3 ~iv~~F~icw~Py~i~~l~~~ 23 (112)
+.+.+|++|.+-|.++.+..+
T Consensus 30 itvfv~vI~il~flLLYLvkW 50 (95)
T PHA02657 30 FTIFIFVVCILIYLLIYLVDW 50 (95)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777777766654
No 32
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=42.95 E-value=13 Score=20.78 Aligned_cols=10 Identities=40% Similarity=0.886 Sum_probs=4.8
Q ss_pred hhhhHhhchh
Q psy11836 4 LVLINFACWA 13 (112)
Q Consensus 4 iv~~F~icw~ 13 (112)
+|+.+++||.
T Consensus 47 ~VilwfvCC~ 56 (94)
T PF05393_consen 47 LVILWFVCCK 56 (94)
T ss_pred HHHHHHHHHH
Confidence 4444555554
No 33
>KOG4193|consensus
Probab=42.16 E-value=46 Score=25.49 Aligned_cols=19 Identities=26% Similarity=0.301 Sum_probs=16.6
Q ss_pred HHHHHhcHHHHHHHHHHHH
Q psy11836 51 YLYALLTKHYRRDLVLTLA 69 (112)
Q Consensus 51 iiY~~~~~~fR~~~~~~~~ 69 (112)
+.|++++++.|++.++.++
T Consensus 562 i~~cll~~kvr~~~~k~~~ 580 (610)
T KOG4193|consen 562 IFHCLLRKKVRKEYRKWLC 580 (610)
T ss_pred HhhhhhhHHHHHHHHHHhc
Confidence 5678889999999999986
No 34
>PHA02754 hypothetical protein; Provisional
Probab=40.48 E-value=30 Score=17.73 Aligned_cols=17 Identities=12% Similarity=0.229 Sum_probs=12.4
Q ss_pred HHHhcHHHHHHHHHHHH
Q psy11836 53 YALLTKHYRRDLVLTLA 69 (112)
Q Consensus 53 Y~~~~~~fR~~~~~~~~ 69 (112)
-++++++|.++++++--
T Consensus 9 k~i~eK~Fke~MRelkD 25 (67)
T PHA02754 9 KAIMEKDFKEAMRELKD 25 (67)
T ss_pred HHHHHhHHHHHHHHHHH
Confidence 35788999888776553
No 35
>COG3821 Predicted membrane protein [Function unknown]
Probab=38.86 E-value=16 Score=23.76 Aligned_cols=17 Identities=24% Similarity=0.448 Sum_probs=11.7
Q ss_pred hhhhhHhhchhhHHHHH
Q psy11836 3 LLVLINFACWAPVTFFA 19 (112)
Q Consensus 3 ~iv~~F~icw~Py~i~~ 19 (112)
+-+++|++||+-|.-..
T Consensus 8 lA~~~F~~~W~~yt~~~ 24 (234)
T COG3821 8 LALAVFLLCWLLYTPAS 24 (234)
T ss_pred HHHHHHHHHHHhhhHHh
Confidence 34678889998665443
No 36
>PF11036 YqgB: Virulence promoting factor; InterPro: IPR020196 The yqgB and yqfZ genes are associated with the genomes of bacteria with distinct pathogenic properties and consequently fall into the category of being virulence genes []. However, yqgB and yqfZ genes are not true virulence factors but instead are probably lifestyle determinant genes where the gene products act in concert, enabling the bacteria to cope with its suboptimal physical environment and thus facilitating host colonization [].
Probab=36.46 E-value=14 Score=17.35 Aligned_cols=10 Identities=50% Similarity=1.009 Sum_probs=7.8
Q ss_pred hHHHHHHhcH
Q psy11836 49 NPYLYALLTK 58 (112)
Q Consensus 49 NPiiY~~~~~ 58 (112)
||.+|+++++
T Consensus 18 ~~~vyGLLS~ 27 (43)
T PF11036_consen 18 NPAVYGLLSQ 27 (43)
T ss_pred CchhhhhHhh
Confidence 7888888764
No 37
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class g (Srg) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016020 membrane
Probab=35.58 E-value=80 Score=20.79 Aligned_cols=29 Identities=28% Similarity=0.462 Sum_probs=20.1
Q ss_pred HHHHHHHhhcccchhHHHHHHhcHHHHHH
Q psy11836 35 KILLVFFYPINSCFNPYLYALLTKHYRRD 63 (112)
Q Consensus 35 ~~~~~~l~~~ns~~NPiiY~~~~~~fR~~ 63 (112)
..+.....-.-+...|++-.+.+++.|++
T Consensus 246 ~~~~~f~sD~ltl~~P~iLl~fs~~vR~~ 274 (275)
T PF02118_consen 246 YYLLPFASDLLTLSQPYILLIFSKNVRRQ 274 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHheECHhhhcc
Confidence 33344444455667899999999999985
No 38
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=35.27 E-value=24 Score=19.26 Aligned_cols=22 Identities=14% Similarity=0.326 Sum_probs=15.3
Q ss_pred hhhhHhhchhhHHHHHHHHHhC
Q psy11836 4 LVLINFACWAPVTFFALTAALG 25 (112)
Q Consensus 4 iv~~F~icw~Py~i~~l~~~~~ 25 (112)
.++..+.|+.|.-++.+++...
T Consensus 22 sI~s~l~Cc~PlGi~Ai~~s~k 43 (82)
T PF04505_consen 22 SIFSTLCCCWPLGIVAIVYSSK 43 (82)
T ss_pred HHHHHHHHHhhHHHHHheechh
Confidence 3444557777999888887663
No 39
>PF03155 Alg6_Alg8: ALG6, ALG8 glycosyltransferase family; InterPro: IPR004856 N-linked (asparagine-linked) glycosylation of proteins is mediated by a highly conserved pathway in eukaryotes, in which a lipid (dolichol phosphate)-linked oligosaccharide is assembled at the endoplasmic reticulum membrane prior to the transfer of the oligosaccharide moiety to the target asparagine residues. This oligosaccharide is composed of Glc(3)Man(9)GlcNAc(2). The addition of the three glucose residues is the final series of steps in the synthesis of the oligosaccharide precursor. Alg6 transfers the first glucose residue, and Alg8 transfers the second one []. In the human alg6 gene, a C-T transition, which causes Ala333 to be replaced with Val, has been identified as the cause of a congenital disorder of glycosylation, designated as type Ic OMIM:603147 []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0005789 endoplasmic reticulum membrane
Probab=32.60 E-value=29 Score=25.58 Aligned_cols=15 Identities=7% Similarity=0.182 Sum_probs=13.2
Q ss_pred chhhhhHhhchhhHH
Q psy11836 2 ALLVLINFACWAPVT 16 (112)
Q Consensus 2 ~~iv~~F~icw~Py~ 16 (112)
+++++.|.++|+|+.
T Consensus 228 ~~Vi~~f~~~~~PF~ 242 (469)
T PF03155_consen 228 IVVIATFALSFGPFL 242 (469)
T ss_pred HHHHHHHHHHHHHHH
Confidence 468899999999996
No 40
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class j (Srj) from the Str superfamily [, ]. The Srj family is designated as the out-group based on its location in preliminary phylogenetic analyses of the entire superfamily [].
Probab=31.29 E-value=78 Score=22.09 Aligned_cols=53 Identities=11% Similarity=0.192 Sum_probs=33.8
Q ss_pred hhchhhHHHHHHHHHhCCCCccchhHHHHHHHHhhcccchhHHHHHHhcHHHHHH
Q psy11836 9 FACWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKHYRRD 63 (112)
Q Consensus 9 ~icw~Py~i~~l~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~ 63 (112)
++|+.|=.+......++-+ .. .+...+.......=+++||+.-.+.-|.||+.
T Consensus 257 ~vsf~Pc~~~wy~pif~i~-~~-~~~n~~~~iAls~FPf~DPlAii~~lP~~R~r 309 (310)
T PF10319_consen 257 CVSFSPCVLSWYGPIFGID-LG-RWNNYFSVIALSAFPFLDPLAIILCLPAFRNR 309 (310)
T ss_pred HHhhccHHHHHhHHHHcCC-hh-HHHHHHHHHHHHHccccCchHhheecHHhhcc
Confidence 5677777766544444422 22 33333333333377899999999999999985
No 41
>PF10842 DUF2642: Protein of unknown function (DUF2642); InterPro: IPR020139 This entry contains proteins with no known function.
Probab=31.19 E-value=28 Score=18.32 Aligned_cols=11 Identities=36% Similarity=0.851 Sum_probs=9.0
Q ss_pred cccchhHHHHH
Q psy11836 44 INSCFNPYLYA 54 (112)
Q Consensus 44 ~ns~~NPiiY~ 54 (112)
..|++||.+|-
T Consensus 4 ~vs~vdpyvyq 14 (66)
T PF10842_consen 4 MVSLVDPYVYQ 14 (66)
T ss_pred ceeccCHHHHH
Confidence 46889999985
No 42
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=29.89 E-value=20 Score=23.50 Aligned_cols=10 Identities=10% Similarity=0.637 Sum_probs=5.0
Q ss_pred chhhhhHhhc
Q psy11836 2 ALLVLINFAC 11 (112)
Q Consensus 2 ~~iv~~F~ic 11 (112)
++|.++|+||
T Consensus 135 IIIAVLfLIC 144 (227)
T PF05399_consen 135 IIIAVLFLIC 144 (227)
T ss_pred HHHHHHHHHH
Confidence 3445555555
No 43
>PHA03169 hypothetical protein; Provisional
Probab=28.84 E-value=19 Score=25.67 Aligned_cols=59 Identities=14% Similarity=0.339 Sum_probs=29.4
Q ss_pred hhchh-hHHHHHHHHHhCCCCccchhHHHHHHHHhhcccchhHHHHHHh----cHHHHHHHHHHHHhh
Q psy11836 9 FACWA-PVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALL----TKHYRRDLVLTLARI 71 (112)
Q Consensus 9 ~icw~-Py~i~~l~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~----~~~fR~~~~~~~~~~ 71 (112)
++||. ||.++.|-..+........ -...|-..+-.--|++|++. +++--|++++.-+..
T Consensus 326 v~fWgdP~~LyrLsraLqfpG~~ss----gvq~lP~~p~~p~~~~y~ItVyCqsk~TaK~V~kaq~~y 389 (413)
T PHA03169 326 VFCWGDPYSLYRLSRCLQFPGAVSS----GVQTFPDAPGSPVIWAYCITVFCQSRGTAKAVIKAQKKY 389 (413)
T ss_pred EEecCCcHHHHHHHHHhccCCeecc----ceeecCCCCCCCCCceeEEEEEecCcccHHHHHHHHHHH
Confidence 57888 7888888766633221000 01122223333344555443 556666666655543
No 44
>PF11014 DUF2852: Protein of unknown function (DUF2852); InterPro: IPR021273 This bacterial family of proteins has no known function.
Probab=28.80 E-value=62 Score=19.09 Aligned_cols=8 Identities=25% Similarity=0.106 Sum_probs=3.7
Q ss_pred hhhhhHhh
Q psy11836 3 LLVLINFA 10 (112)
Q Consensus 3 ~iv~~F~i 10 (112)
+||+-|++
T Consensus 14 ~mVlGFi~ 21 (115)
T PF11014_consen 14 AMVLGFIV 21 (115)
T ss_pred HHHHHHHH
Confidence 34444444
No 45
>TIGR01096 3A0103s03R lysine-arginine-ornithine-binding periplasmic protein.
Probab=26.25 E-value=39 Score=21.69 Aligned_cols=19 Identities=16% Similarity=-0.015 Sum_probs=15.0
Q ss_pred hhhhhHhhchhhHHHHHHH
Q psy11836 3 LLVLINFACWAPVTFFALT 21 (112)
Q Consensus 3 ~iv~~F~icw~Py~i~~l~ 21 (112)
+.++++++||+|+-+..=.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~ 21 (250)
T TIGR01096 3 VLLAALVAGASSAATAAAA 21 (250)
T ss_pred hhHHHHHHhccchhhHHHh
Confidence 5678999999998777643
No 46
>KOG3827|consensus
Probab=25.27 E-value=16 Score=26.19 Aligned_cols=20 Identities=10% Similarity=0.076 Sum_probs=14.8
Q ss_pred chhhhhHhhchhhHHHHHHH
Q psy11836 2 ALLVLINFACWAPVTFFALT 21 (112)
Q Consensus 2 ~~iv~~F~icw~Py~i~~l~ 21 (112)
++-.+.|++.|+=|-++.-+
T Consensus 67 liF~~sf~~SWl~Fg~iwwl 86 (400)
T KOG3827|consen 67 LIFSLSFVLSWLFFGVIWWL 86 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45567899999988777444
No 47
>PF11587 Prion_bPrPp: Major prion protein bPrPp - N terminal; PDB: 1SKH_A.
Probab=24.40 E-value=46 Score=14.46 Aligned_cols=13 Identities=38% Similarity=0.795 Sum_probs=5.8
Q ss_pred hchhhHHHHHHHH
Q psy11836 10 ACWAPVTFFALTA 22 (112)
Q Consensus 10 icw~Py~i~~l~~ 22 (112)
-||+=...+..|.
T Consensus 7 gcWilvLfvatws 19 (29)
T PF11587_consen 7 GCWILVLFVATWS 19 (29)
T ss_dssp TTHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHh
Confidence 3555444444443
No 48
>KOG1735|consensus
Probab=24.32 E-value=8 Score=23.72 Aligned_cols=12 Identities=42% Similarity=0.667 Sum_probs=8.1
Q ss_pred hHhhchhhHHHH
Q psy11836 7 INFACWAPVTFF 18 (112)
Q Consensus 7 ~F~icw~Py~i~ 18 (112)
+|++||.|...-
T Consensus 87 i~f~~wsPd~a~ 98 (146)
T KOG1735|consen 87 IFFIAWSPDTAP 98 (146)
T ss_pred EEEEEECCCccc
Confidence 467788876553
No 49
>COG4818 Predicted membrane protein [Function unknown]
Probab=24.22 E-value=1e+02 Score=17.62 Aligned_cols=12 Identities=25% Similarity=0.473 Sum_probs=8.1
Q ss_pred hhhHhhchhhHH
Q psy11836 5 VLINFACWAPVT 16 (112)
Q Consensus 5 v~~F~icw~Py~ 16 (112)
++++++.|.|+-
T Consensus 47 ~l~ill~~iP~I 58 (105)
T COG4818 47 LLIILLAFIPYI 58 (105)
T ss_pred HHHHHHHHhhhh
Confidence 456677777774
No 50
>PF02295 z-alpha: Adenosine deaminase z-alpha domain; InterPro: IPR000607 Double-stranded RNA-specific adenosine deaminase (3.5 from EC) converts multiple adenosines to inosines and creates I/U mismatched base pairs in double-helical RNA substrates without apparent sequence specificity. DRADA has been found to modify adenosines in AU-rich regions more frequently, probably due to the relative ease of melting A/U base pairs compared to G/C base pairs. The protein functions to modify viral RNA genomes, and may be responsible for hypermutation of certain negative-stranded viruses. DRADA edits the mRNAs for the glutamate receptor subunits by site-selective adenosine deamination. The DRADA repeat is also found in viral E3 proteins, which contain a double-stranded RNA-binding domain.; GO: 0003723 RNA binding, 0003726 double-stranded RNA adenosine deaminase activity; PDB: 1OYI_A 3EYI_A 2L4M_A 2HEO_D 1J75_A 1SFU_B 3IRR_B 2ACJ_C 3F22_B 2L54_A ....
Probab=24.13 E-value=51 Score=17.17 Aligned_cols=13 Identities=31% Similarity=0.317 Sum_probs=10.5
Q ss_pred ccchhHHHHHHhc
Q psy11836 45 NSCFNPYLYALLT 57 (112)
Q Consensus 45 ns~~NPiiY~~~~ 57 (112)
-.-+|+++|.+..
T Consensus 34 kk~VN~~LY~L~k 46 (66)
T PF02295_consen 34 KKEVNRVLYRLEK 46 (66)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5789999998654
No 51
>PF04628 Sedlin_N: Sedlin, N-terminal conserved region; InterPro: IPR006722 Sedlin is a 140 amino-acid protein with a putative role in endoplasmic reticulum-to-Golgi transport. Several missense mutations and deletion mutations in the SEDL gene, which result in protein truncation by frame shift, are responsible for spondyloepiphyseal dysplasia tarda, a progressive skeletal disorder (OMIM:313400). [].; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005622 intracellular; PDB: 3PR6_A 2J3W_A 1H3Q_A.
Probab=24.08 E-value=44 Score=19.82 Aligned_cols=29 Identities=7% Similarity=0.149 Sum_probs=20.0
Q ss_pred HhhcccchhHHH---HHHhcHHHHHHHHHHHH
Q psy11836 41 FYPINSCFNPYL---YALLTKHYRRDLVLTLA 69 (112)
Q Consensus 41 l~~~ns~~NPii---Y~~~~~~fR~~~~~~~~ 69 (112)
=+|+....||+- =-+.++.|.+.++++.+
T Consensus 100 ~~Y~~~~~NPF~~~~~~I~S~~Fd~~v~~l~~ 131 (132)
T PF04628_consen 100 ELYVKALCNPFYQPGTPIKSPKFDSRVRALAK 131 (132)
T ss_dssp HHHHHHHTSTTCGCT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCCCCCCCCCcCCHHHHHHHHHHhc
Confidence 445667777775 35668888888887764
No 52
>PHA02132 hypothetical protein
Probab=23.75 E-value=1.2e+02 Score=16.19 Aligned_cols=20 Identities=10% Similarity=0.323 Sum_probs=15.2
Q ss_pred hhHhhchhhHHHHHHHHHhC
Q psy11836 6 LINFACWAPVTFFALTAALG 25 (112)
Q Consensus 6 ~~F~icw~Py~i~~l~~~~~ 25 (112)
+.-...|+|..++.++....
T Consensus 55 g~ia~awlp~~~~l~~kl~e 74 (86)
T PHA02132 55 GMIAGAWLPLAIYLVCKLCE 74 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44456899999998887653
No 53
>PF07746 LigA: Aromatic-ring-opening dioxygenase LigAB, LigA subunit; InterPro: IPR011986 Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes (IPR000627 from INTERPRO) use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) [, ]. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Extradiol dioxygenases are usually homo-multimeric, bind one atom of ferrous ion per subunit and have a subunit size of about 33 kDa. Extradiol dioxygenases can be divided into three classes. Class I and II enzymes (IPR000486 from INTERPRO) show sequence similarity, with the two-domain class II enzymes having evolved from a class I enzyme through gene duplication. Class III enzymes are different in sequence and structure, but they do share several common active-site characteristics with the class II enzymes, in particular the coordination sphere and the disposition of the putative catalytic base are very similar. Class III enzymes usually have two subunits, designated A (IPR004183 from INTERPRO) and B (IPR004183 from INTERPRO). LigAB is a protocatechuate 4,5-dioxygenase (1.13.11.8 from EC) that belongs to the extradiol class III enzyme family. The LigA subunit of this enzyme is multi-helical, containing a compact array of 6 short helices [].; PDB: 1BOU_A 1B4U_A.
Probab=23.02 E-value=1.1e+02 Score=17.01 Aligned_cols=20 Identities=15% Similarity=0.348 Sum_probs=15.9
Q ss_pred hhHHHHHHhcHHHHHHHHHH
Q psy11836 48 FNPYLYALLTKHYRRDLVLT 67 (112)
Q Consensus 48 ~NPiiY~~~~~~fR~~~~~~ 67 (112)
+|=+++.+..++.|++|++-
T Consensus 1 lNkf~~~L~~~~~r~~F~~D 20 (88)
T PF07746_consen 1 LNKFCWSLNDPENRERFLAD 20 (88)
T ss_dssp HHHHHHGGGSHHHHHHHHH-
T ss_pred ChHHHHHHcCHHHHHHHHHC
Confidence 47788889999999988763
No 54
>PF13153 DUF3985: Protein of unknown function (DUF3985)
Probab=22.43 E-value=1e+02 Score=14.42 Aligned_cols=19 Identities=16% Similarity=0.139 Sum_probs=11.3
Q ss_pred hhhhhHhhchhhHHHHHHH
Q psy11836 3 LLVLINFACWAPVTFFALT 21 (112)
Q Consensus 3 ~iv~~F~icw~Py~i~~l~ 21 (112)
++.++|++|=..|..+.+.
T Consensus 9 lvlliyv~~kvayvalkil 27 (44)
T PF13153_consen 9 LVLLIYVFFKVAYVALKIL 27 (44)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556666666666655443
No 55
>PRK13378 protocatechuate 4,5-dioxygenase subunit alpha; Provisional
Probab=22.37 E-value=1.2e+02 Score=17.95 Aligned_cols=20 Identities=10% Similarity=0.218 Sum_probs=17.3
Q ss_pred chhHHHHHHhcHHHHHHHHH
Q psy11836 47 CFNPYLYALLTKHYRRDLVL 66 (112)
Q Consensus 47 ~~NPiiY~~~~~~fR~~~~~ 66 (112)
-+|=+++.+..++.|++|+.
T Consensus 26 ~LN~fc~sl~~~~nRe~F~a 45 (117)
T PRK13378 26 ALNKMCFSFNDAANRAAFLA 45 (117)
T ss_pred HHHHHHHHhCCHHHHHHHHh
Confidence 36889999999999999965
No 56
>PF11601 Shal-type: Shal-type voltage-gated potassium channels ; InterPro: IPR021645 This family of proteins represents Shal-type voltage-gated potassium channels which interact with Kv channel-interacting proteins to modulate cell surface expression and function of Kv4 channels. The interaction of the Shal-type protein Kv4.2 and the Kv interacting protein KChiP1 forms a structure which is like the structure between calmodulin and its target peptides when they interact. Interactions of an N-terminal alpha helix in Kv4.2 and a C-terminal alpha helix in KChIP1 are essential for the modulation of Kv4.2 by KChIPs []. ; PDB: 2NZ0_B 2I2R_B 1S6C_B.
Probab=22.18 E-value=44 Score=14.31 Aligned_cols=13 Identities=31% Similarity=0.508 Sum_probs=8.1
Q ss_pred hchhhHHHHHHHH
Q psy11836 10 ACWAPVTFFALTA 22 (112)
Q Consensus 10 icw~Py~i~~l~~ 22 (112)
..|+||.=..-+.
T Consensus 4 aaWlPfaraaAIG 16 (28)
T PF11601_consen 4 AAWLPFARAAAIG 16 (28)
T ss_dssp HTTHHHHHHHHTT
T ss_pred hhhhhHHHHHhhc
Confidence 4688886554443
No 57
>PF04654 DUF599: Protein of unknown function, DUF599; InterPro: IPR006747 This family includes several uncharacterised proteins.
Probab=22.06 E-value=82 Score=20.56 Aligned_cols=24 Identities=13% Similarity=0.326 Sum_probs=18.3
Q ss_pred hhhhhHhhchhhHHHHHHHHHhCC
Q psy11836 3 LLVLINFACWAPVTFFALTAALGY 26 (112)
Q Consensus 3 ~iv~~F~icw~Py~i~~l~~~~~~ 26 (112)
+.+..|++||.=|+.+........
T Consensus 2 ~av~~~l~~~~gY~~~l~~~~~~~ 25 (216)
T PF04654_consen 2 IAVPLFLLCWVGYHLYLERRVRRR 25 (216)
T ss_pred cHHHHHHHHHHHHHHHHhhhccCC
Confidence 467889999999998876655433
No 58
>cd07925 LigA_like_1 The A subunit of Uncharacterized proteins with similarity to Protocatechuate 4,5-dioxygenase (LigAB). The proteins of unknown function in this subfamily are similar to the A subunit of the Protocatechuate (PCA) 4,5-dioxygenase (LigAB). LigAB belongs to the class III extradiol dioxygenase family, composed of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Dioxygenases play key roles in the degradation of aromatic compounds. PCA 4,5-dioxygenase catalyzes the oxidization and subsequent ring-opening of PCA (or 3,4-dihydroxybenzoic acid), which is an intermediate in the breakdown of lignin and other compounds.
Probab=21.90 E-value=1.3e+02 Score=17.53 Aligned_cols=20 Identities=10% Similarity=0.235 Sum_probs=17.1
Q ss_pred chhHHHHHHhcHHHHHHHHH
Q psy11836 47 CFNPYLYALLTKHYRRDLVL 66 (112)
Q Consensus 47 ~~NPiiY~~~~~~fR~~~~~ 66 (112)
-+|=+++.+..++.|++|+.
T Consensus 15 ~LN~fc~sl~~~~nRe~F~a 34 (106)
T cd07925 15 ALNKMCFSFNDAANREAFLA 34 (106)
T ss_pred HHHHHHHHHCCHHHHHHHHh
Confidence 36889999999999999865
No 59
>PRK06099 F0F1 ATP synthase subunit I; Validated
Probab=21.31 E-value=1.1e+02 Score=18.30 Aligned_cols=19 Identities=16% Similarity=0.249 Sum_probs=14.7
Q ss_pred hhHhhchhhHHHHHHHHHh
Q psy11836 6 LINFACWAPVTFFALTAAL 24 (112)
Q Consensus 6 ~~F~icw~Py~i~~l~~~~ 24 (112)
.-.++||+|+.++.....+
T Consensus 43 ~Ggli~~LPn~~Fa~~aF~ 61 (126)
T PRK06099 43 LGFLSAFLPFCLFVYWIFF 61 (126)
T ss_pred HhhHHHHHhHHHHHHHHHH
Confidence 3457899999999887644
No 60
>PRK06761 hypothetical protein; Provisional
Probab=21.26 E-value=15 Score=25.04 Aligned_cols=32 Identities=19% Similarity=0.208 Sum_probs=24.5
Q ss_pred HHHHhhcccchhHHHHHHhcHHHHHHHHHHHHh
Q psy11836 38 LVFFYPINSCFNPYLYALLTKHYRRDLVLTLAR 70 (112)
Q Consensus 38 ~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~ 70 (112)
..+.+.+ .-+||+|+.+...|..+++++.+..
T Consensus 172 ~~l~~~i-~~l~p~l~yl~~~dv~~~~~~~~~e 203 (282)
T PRK06761 172 MKLAKII-ENLNPMLFYLEQDDVEFSFRKALKE 203 (282)
T ss_pred HHHHHHH-hccCcEEEEecccCHHHHHHHHHHh
Confidence 3344433 3789999999999999999998853
No 61
>PF07325 Curto_V2: Curtovirus V2 protein; InterPro: IPR009931 This family consists of several Curtovirus V2 proteins. The exact function of V2 is unclear but it is known that the protein is required for a successful host infection process [].
Probab=21.07 E-value=93 Score=18.13 Aligned_cols=12 Identities=17% Similarity=0.506 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHh
Q psy11836 59 HYRRDLVLTLAR 70 (112)
Q Consensus 59 ~fR~~~~~~~~~ 70 (112)
+|++++++++++
T Consensus 52 qFQKevKKLLk~ 63 (126)
T PF07325_consen 52 QFQKEVKKLLKR 63 (126)
T ss_pred HHHHHHHHHHHH
Confidence 699999999975
No 62
>TIGR02792 PCA_ligA protocatechuate 4,5-dioxygenase, alpha subunit. Protocatechuate (PCA) 4,5-dioxygenase is the first enzyme in the PCA 4,5-cleavage pathway that is an alternative to PCA 3,4-cleavage and PCA 2,3 cleavage pathways. PCA is an intermediate in the breakdown of lignin (hence the gene symbol ligA) and other compounds. Members of this family are the alpha chain of PCA 4,5-dioxygenase, or the equivalent domain of a fusion protein.
Probab=20.81 E-value=1.3e+02 Score=17.80 Aligned_cols=20 Identities=15% Similarity=0.296 Sum_probs=17.1
Q ss_pred chhHHHHHHhcHHHHHHHHH
Q psy11836 47 CFNPYLYALLTKHYRRDLVL 66 (112)
Q Consensus 47 ~~NPiiY~~~~~~fR~~~~~ 66 (112)
-+|=+.+.+..++.|++|+.
T Consensus 20 ~LN~fc~sl~~~~nRerF~a 39 (117)
T TIGR02792 20 NLNQFCMSLMKAENRERFKA 39 (117)
T ss_pred HHHHHHHHhcCHHHHHHHHh
Confidence 36889999999999999965
No 63
>PF00375 SDF: Sodium:dicarboxylate symporter family; InterPro: IPR001991 It has been shown [] that integral membrane proteins that mediate the uptake of a wide variety of molecules with the concomitant uptake of sodium ions (sodium symporters) can be grouped, on the basis of sequence and functional similarities into a number of distinct families. One of these families [] is known as the sodium:dicarboxylate symporter family (SDF). Such re-uptake of neurotransmitters from the synapses, is thought to be an important mechanism for terminating their action, by removing these chemicals from the synaptic cleft, and transporting them into presynaptic nerve terminals, and surrounding neuroglia. this removal is also believed to prevent them accumulating to the point of reaching neurotoxic [, ]. The structure of these transporter proteins has been variously reported to contain from 8 to 10 transmembrane (TM) regions, although 10 now seems to be the accepted value. Members of the family include: several mammalian excitatory amino acid transporters, and a number of bacterial transporters. They vary with regars to their dependence on transport of sodium, and other ions.; GO: 0017153 sodium:dicarboxylate symporter activity, 0006835 dicarboxylic acid transport, 0016020 membrane; PDB: 3V8G_B 1XFH_A 3KBC_B 2NWX_B 3V8F_B 2NWL_B 2NWW_A.
Probab=20.59 E-value=3.3e+02 Score=19.42 Aligned_cols=66 Identities=20% Similarity=0.102 Sum_probs=37.3
Q ss_pred hhhhHhhchhhHHHHHHHHHhCCCCccchhHHH-----HHHHHh-hc-ccchhHHHHH-HhcHHHHHHHHHHHHh
Q psy11836 4 LVLINFACWAPVTFFALTAALGYPLISVTKSKI-----LLVFFY-PI-NSCFNPYLYA-LLTKHYRRDLVLTLAR 70 (112)
Q Consensus 4 iv~~F~icw~Py~i~~l~~~~~~~~~~~~~~~~-----~~~~l~-~~-ns~~NPiiY~-~~~~~fR~~~~~~~~~ 70 (112)
-++-++++.+|+-+..++....... ..+.... +..+++ .. -..+.|+++. +..++..+-++++.+-
T Consensus 175 ~ii~~i~~~~Pigv~~l~a~~~~~~-~~~~l~~l~~~v~~~~~~~~i~~~v~~pl~~~~~~~~np~~~~~~~~~~ 248 (390)
T PF00375_consen 175 KIINWIMKLAPIGVFGLIANSIATQ-GLSILGALGKFVLTVYVALLIHLFVVLPLILFVLTRKNPFKFLKAMLPA 248 (390)
T ss_dssp HHHHHHTTTHHHHHHHHHHHHHHSS-CCGHHHHHHHHHHHHHHHHHHHHHHTHHHHHH-TTT--HHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-ChhhHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCHHHHHHHHHHH
Confidence 4566788999999998886542221 1222211 111111 12 3467899999 5566777777776653
No 64
>PF14752 RBP_receptor: Retinol binding protein receptor
Probab=20.42 E-value=1.6e+02 Score=22.75 Aligned_cols=19 Identities=26% Similarity=0.425 Sum_probs=12.5
Q ss_pred hhhhhHhhchhhHHHHHHH
Q psy11836 3 LLVLINFACWAPVTFFALT 21 (112)
Q Consensus 3 ~iv~~F~icw~Py~i~~l~ 21 (112)
++.++|+.+|.|+.++.-.
T Consensus 170 llCL~fL~~~f~~~lvk~~ 188 (617)
T PF14752_consen 170 LLCLAFLSLWFPYLLVKSF 188 (617)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3566777777777766433
Done!