Query psy11836
Match_columns 112
No_of_seqs 103 out of 1165
Neff 10.0
Searched_HMMs 29240
Date Fri Aug 16 20:12:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11836.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11836hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4grv_A Neurotensin receptor ty 99.9 2.2E-23 7.7E-28 146.6 1.2 71 1-71 411-488 (510)
2 2rh1_A Beta-2-adrenergic recep 99.8 2.2E-20 7.6E-25 130.9 5.8 68 1-70 410-477 (500)
3 3eml_A Human adenosine A2A rec 99.8 3E-19 1E-23 123.7 7.0 71 1-71 397-468 (488)
4 4eiy_A Adenosine receptor A2A/ 99.8 3.6E-19 1.2E-23 122.3 7.2 70 2-71 357-427 (447)
5 2lnl_A C-X-C chemokine recepto 99.8 3.9E-19 1.4E-23 116.9 7.0 69 2-70 217-294 (296)
6 3vw7_A Proteinase-activated re 99.8 7.5E-20 2.6E-24 126.9 3.4 69 2-70 393-465 (484)
7 3v2y_A Sphingosine 1-phosphate 99.8 1.1E-19 3.7E-24 128.1 3.7 69 2-70 424-493 (520)
8 3pbl_A D(3) dopamine receptor, 99.8 8.8E-19 3E-23 121.4 6.3 69 2-70 404-472 (481)
9 2ks9_A Substance-P receptor; w 99.8 4.5E-18 1.6E-22 114.4 9.2 69 2-70 251-322 (364)
10 3uon_A Human M2 muscarinic ace 99.7 1.6E-18 5.4E-23 119.7 6.4 68 2-70 391-458 (467)
11 4dkl_A MU-type opioid receptor 99.7 1.9E-18 6.5E-23 119.1 6.0 68 2-69 386-455 (464)
12 1u19_A Rhodopsin; G protein-co 99.7 1.4E-17 4.9E-22 111.0 9.9 68 2-69 256-323 (349)
13 3rze_A Histamine H1 receptor, 99.7 3.4E-18 1.2E-22 117.6 5.7 69 2-71 376-444 (452)
14 2z73_A Rhodopsin; visual pigme 99.7 5.1E-18 1.8E-22 117.2 6.3 69 2-70 264-332 (448)
15 4amj_A Beta-1 adrenergic recep 99.7 8.2E-17 2.8E-21 105.8 6.3 67 2-70 235-301 (315)
16 3odu_A C-X-C chemokine recepto 99.7 1.6E-18 5.4E-23 120.7 -2.1 71 1-71 415-494 (502)
17 4ea3_A Fusion protein of nocic 99.7 1.2E-16 4E-21 110.2 5.6 69 2-70 340-410 (434)
18 3sn6_R Lysozyme, beta-2 adrene 99.6 1.8E-16 6E-21 111.4 4.2 66 2-69 425-490 (514)
19 2koe_A Human cannabinoid recep 99.3 9.1E-14 3.1E-18 66.1 -1.7 35 35-69 3-37 (40)
20 2ki9_A Cannabinoid receptor 2; 98.6 1.9E-09 6.6E-14 48.7 -0.7 22 2-23 9-30 (33)
21 2ket_A Cathelicidin-6; antimic 85.5 0.73 2.5E-05 18.4 1.9 14 58-71 4-17 (27)
22 3noh_A Putative peptide bindin 62.9 1.8 6E-05 24.9 0.2 23 47-69 26-48 (139)
23 1s6c_B Potassium voltage-gated 50.3 6.2 0.00021 16.7 0.8 10 7-16 3-12 (30)
24 2ks9_A Substance-P receptor; w 38.7 77 0.0026 20.4 5.4 19 56-74 304-322 (364)
25 1skh_A Major prion protein 2; 27.6 23 0.0008 14.9 0.8 13 10-22 7-19 (30)
26 3eyi_A Z-DNA-binding protein 1 25.6 17 0.00057 18.7 0.2 27 32-58 25-52 (72)
27 1btq_A BAND 3 anion transport 24.3 21 0.00072 14.5 0.4 15 3-17 5-19 (26)
28 2v1n_A KIN17, protein KIN homo 21.4 60 0.0021 18.2 2.0 15 56-70 19-33 (111)
No 1
>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}
Probab=99.86 E-value=2.2e-23 Score=146.62 Aligned_cols=71 Identities=23% Similarity=0.274 Sum_probs=52.4
Q ss_pred CchhhhhHhhchhhHHHHHHHHHhCCCCcc-------chhHHHHHHHHhhcccchhHHHHHHhcHHHHHHHHHHHHhh
Q psy11836 1 MALLVLINFACWAPVTFFALTAALGYPLIS-------VTKSKILLVFFYPINSCFNPYLYALLTKHYRRDLVLTLARI 71 (112)
Q Consensus 1 l~~iv~~F~icw~Py~i~~l~~~~~~~~~~-------~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~~ 71 (112)
+++|+++|++||+||+++.++..+...... ..+...++.+|+|+|||+||+||+++|++||++|+++++|+
T Consensus 411 L~iVv~~F~iCWlPf~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~Y~NS~iNPiIY~~~n~~FR~aFk~iL~C~ 488 (510)
T 4grv_A 411 ARAVVIAFVVCWLPYHVRRLMFCYISDEQWTTFLFDFYHYFYMLTNALAYASSAINPILYNLVSANFRQVFLSTLACL 488 (510)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhc
Confidence 357899999999999999999887544321 12345677889999999999999999999999999999753
No 2
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A*
Probab=99.81 E-value=2.2e-20 Score=130.93 Aligned_cols=68 Identities=22% Similarity=0.380 Sum_probs=58.8
Q ss_pred CchhhhhHhhchhhHHHHHHHHHhCCCCccchhHHHHHHHHhhcccchhHHHHHHhcHHHHHHHHHHHHh
Q psy11836 1 MALLVLINFACWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKHYRRDLVLTLAR 70 (112)
Q Consensus 1 l~~iv~~F~icw~Py~i~~l~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~ 70 (112)
+++|+++|++||+||+++.++..+.... .....+.+..+|+++||++||+||++ +++||+++++++++
T Consensus 410 l~ivv~~F~icWlP~~i~~l~~~~~~~~-~~~~~~~~~~~L~y~NS~iNPiIY~~-n~~FR~af~~il~~ 477 (500)
T 2rh1_A 410 LGIIMGTFTLCWLPFFIVNIVHVIQDNL-IRKEVYILLNWIGYVNSGFNPLIYCR-SPDFRIAFQELLCL 477 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTS-SCHHHHHHHHHHHHHGGGTHHHHGGG-SHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHhhcchhhhc-cHHHHHHHHHHHhh
Confidence 3679999999999999999998876432 34667788899999999999999996 99999999999953
No 3
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Probab=99.78 E-value=3e-19 Score=123.74 Aligned_cols=71 Identities=18% Similarity=0.318 Sum_probs=61.2
Q ss_pred CchhhhhHhhchhhHHHHHHHHHhCCCC-ccchhHHHHHHHHhhcccchhHHHHHHhcHHHHHHHHHHHHhh
Q psy11836 1 MALLVLINFACWAPVTFFALTAALGYPL-ISVTKSKILLVFFYPINSCFNPYLYALLTKHYRRDLVLTLARI 71 (112)
Q Consensus 1 l~~iv~~F~icw~Py~i~~l~~~~~~~~-~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~~ 71 (112)
+++|+++|++||+||+++.++..+.... ........+..+++++||++||+||++++++||++++++++++
T Consensus 397 l~~iv~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~~~~l~~~~ 468 (488)
T 3eml_A 397 LAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSH 468 (488)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhccCccccccHHHHHHHHHHHHHHhhhchhhhhhcCHHHHHHHHHHHhhc
Confidence 3578999999999999999998876542 3345667788899999999999999999999999999999864
No 4
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Probab=99.78 E-value=3.6e-19 Score=122.32 Aligned_cols=70 Identities=19% Similarity=0.306 Sum_probs=60.6
Q ss_pred chhhhhHhhchhhHHHHHHHHHhCCC-CccchhHHHHHHHHhhcccchhHHHHHHhcHHHHHHHHHHHHhh
Q psy11836 2 ALLVLINFACWAPVTFFALTAALGYP-LISVTKSKILLVFFYPINSCFNPYLYALLTKHYRRDLVLTLARI 71 (112)
Q Consensus 2 ~~iv~~F~icw~Py~i~~l~~~~~~~-~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~~ 71 (112)
++++++|++||+||+++.++..+... .........+..+++++||++||+||++++++||+++++++++.
T Consensus 357 ~~vv~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~~~~~~~~~ 427 (447)
T 4eiy_A 357 AIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSH 427 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT
T ss_pred HHhhhhhheeccHHHHHHHHHHhcCcccccchHHHHHHHHHHHHHhccchhhhHhccHHHHHHHHHHHHHH
Confidence 57899999999999999999887554 23345667788899999999999999999999999999999764
No 5
>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens}
Probab=99.78 E-value=3.9e-19 Score=116.92 Aligned_cols=69 Identities=25% Similarity=0.462 Sum_probs=57.8
Q ss_pred chhhhhHhhchhhHHHHHHHHHhCCCCccc---------hhHHHHHHHHhhcccchhHHHHHHhcHHHHHHHHHHHHh
Q psy11836 2 ALLVLINFACWAPVTFFALTAALGYPLISV---------TKSKILLVFFYPINSCFNPYLYALLTKHYRRDLVLTLAR 70 (112)
Q Consensus 2 ~~iv~~F~icw~Py~i~~l~~~~~~~~~~~---------~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~ 70 (112)
++++++|++||+||+++.++..+....... .....++.+++++||++||+||++++++||++++++++|
T Consensus 217 ~~v~~~f~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~~~~ll~c 294 (296)
T 2lnl_A 217 FAVVLIFLLCWLPYNLVLLADTLMRTQVIQESCERRNNIGRALDATEILGFLHSCLNPIIYAFIGQNFRHGFLKILAM 294 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCSSSCSCHHHHHHHTTHHHHHHHHHGGGGGTHHHHHHHHHCSHHHHHHHHHHHH
T ss_pred HHhhhheeeeehHHHHHHHHHHHhccccCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcC
Confidence 568899999999999999998875543221 234557788999999999999999999999999999975
No 6
>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}
Probab=99.78 E-value=7.5e-20 Score=126.88 Aligned_cols=69 Identities=19% Similarity=0.294 Sum_probs=48.9
Q ss_pred chhhhhHhhchhhHHHHHHHHHhCCCCcc----chhHHHHHHHHhhcccchhHHHHHHhcHHHHHHHHHHHHh
Q psy11836 2 ALLVLINFACWAPVTFFALTAALGYPLIS----VTKSKILLVFFYPINSCFNPYLYALLTKHYRRDLVLTLAR 70 (112)
Q Consensus 2 ~~iv~~F~icw~Py~i~~l~~~~~~~~~~----~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~ 70 (112)
++|+++|++||+||+++.++..+...... ......++.+|+++||++||+||++++++||++++++++|
T Consensus 393 ~~v~~~F~icwlP~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~ns~iNPiIY~~~~~~fR~~~~~ll~~ 465 (484)
T 3vw7_A 393 AAVFCIFIICFGPTNVLLIAHYSFLSHTSTTEAAYFAYLLCVCVSSISCCIDPLIYYYASSECQRYVYSILCC 465 (484)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHTCTTCTTSHHHHHHHHHHHHHHTTHHHHHHHHHHHTSSCC----------
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccccchHHHHHhhHHHHHHHHHHHhh
Confidence 67899999999999999999865432222 2345567888999999999999999999999999999864
No 7
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A*
Probab=99.77 E-value=1.1e-19 Score=128.08 Aligned_cols=69 Identities=23% Similarity=0.405 Sum_probs=58.2
Q ss_pred chhhhhHhhchhhHHHHHHHHHhCCCCc-cchhHHHHHHHHhhcccchhHHHHHHhcHHHHHHHHHHHHh
Q psy11836 2 ALLVLINFACWAPVTFFALTAALGYPLI-SVTKSKILLVFFYPINSCFNPYLYALLTKHYRRDLVLTLAR 70 (112)
Q Consensus 2 ~~iv~~F~icw~Py~i~~l~~~~~~~~~-~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~ 70 (112)
++++++|++||+||+++.++..+..... .......+..+++++|||+||+||++++++||+++++++++
T Consensus 424 ~~vv~~F~vcw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~ 493 (520)
T 3v2y_A 424 IIVLSVFIACWAPLFILLLLDVGCKVKTCDILFRAEYFLVLAVLNSGTNPIIYTLTNKEMRRAFIRIMGR 493 (520)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSCTTTCSTTTSCHHHHHHHHHGGGTHHHHHHHHCHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 5789999999999999999988755322 33445567788999999999999999999999999999864
No 8
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens}
Probab=99.76 E-value=8.8e-19 Score=121.42 Aligned_cols=69 Identities=16% Similarity=0.293 Sum_probs=61.2
Q ss_pred chhhhhHhhchhhHHHHHHHHHhCCCCccchhHHHHHHHHhhcccchhHHHHHHhcHHHHHHHHHHHHh
Q psy11836 2 ALLVLINFACWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKHYRRDLVLTLAR 70 (112)
Q Consensus 2 ~~iv~~F~icw~Py~i~~l~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~ 70 (112)
++++++|++||+||+++.++..+............+..+|+++||++||+||++++++||++++++++|
T Consensus 404 ~~iv~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~L~~~ns~~NPiIY~~~~~~fR~~~~~ll~c 472 (481)
T 3pbl_A 404 AIVLGAFIVCWLPFFLTHVLNTHCQTCHVSPELYSATTWLGYVNSALNPVIYTTFNIEFRKAFLKILSC 472 (481)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhhHHHHHHHHHhccccccCcHHHHHHHHHHHHHhhccchHHHHHcCHHHHHHHHHHHhc
Confidence 578999999999999999998876654455677888899999999999999999999999999999963
No 9
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A
Probab=99.75 E-value=4.5e-18 Score=114.35 Aligned_cols=69 Identities=17% Similarity=0.394 Sum_probs=57.6
Q ss_pred chhhhhHhhchhhHHHHHHHHHhCCCCc---cchhHHHHHHHHhhcccchhHHHHHHhcHHHHHHHHHHHHh
Q psy11836 2 ALLVLINFACWAPVTFFALTAALGYPLI---SVTKSKILLVFFYPINSCFNPYLYALLTKHYRRDLVLTLAR 70 (112)
Q Consensus 2 ~~iv~~F~icw~Py~i~~l~~~~~~~~~---~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~ 70 (112)
++++++|++||+||+++.++..+..... .......+..+++++||++||+||++.+++||+++++++++
T Consensus 251 ~~v~~~f~~~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~ 322 (364)
T 2ks9_A 251 IVVVCTFAICWLPFHIFFLLPYINPDLYLKKFIQQVYLAIMWLAMSSTMYNPIIYCCLNDRFRLGFKHAFRC 322 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTSCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhh
Confidence 5688999999999999999887754321 13445667778999999999999999999999999999975
No 10
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Probab=99.75 E-value=1.6e-18 Score=119.66 Aligned_cols=68 Identities=22% Similarity=0.323 Sum_probs=59.9
Q ss_pred chhhhhHhhchhhHHHHHHHHHhCCCCccchhHHHHHHHHhhcccchhHHHHHHhcHHHHHHHHHHHHh
Q psy11836 2 ALLVLINFACWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKHYRRDLVLTLAR 70 (112)
Q Consensus 2 ~~iv~~F~icw~Py~i~~l~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~ 70 (112)
++|+++|++||+||+++.++..+.... .......+..+++++||++||+||++++++||++++++++|
T Consensus 391 ~~iv~~F~icw~P~~i~~~~~~~~~~~-~~~~~~~i~~~L~~~ns~~NPiIY~~~~~~fR~~~~~ll~c 458 (467)
T 3uon_A 391 LAILLAFIITWAPYNVMVLINTFCAPC-IPNTVWTIGYWLCYINSTINPACYALCNATFKKTFKHLLMC 458 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSTT-SCHHHHHHHHHHHHHTTTHHHHHHHHHCHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHhhhhhhHHHHHcCHHHHHHHHHHHhh
Confidence 578999999999999999998886654 34677788889999999999999999999999999999964
No 11
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*
Probab=99.74 E-value=1.9e-18 Score=119.05 Aligned_cols=68 Identities=26% Similarity=0.432 Sum_probs=56.8
Q ss_pred chhhhhHhhchhhHHHHHHHHHhCCCC--ccchhHHHHHHHHhhcccchhHHHHHHhcHHHHHHHHHHHH
Q psy11836 2 ALLVLINFACWAPVTFFALTAALGYPL--ISVTKSKILLVFFYPINSCFNPYLYALLTKHYRRDLVLTLA 69 (112)
Q Consensus 2 ~~iv~~F~icw~Py~i~~l~~~~~~~~--~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~ 69 (112)
++|+++|++||+||+++.++..+.... ........+..+|+++||++||+||++++++||++++++++
T Consensus 386 ~~v~~~F~icw~P~~i~~l~~~~~~~~~~~~~~~~~~~~~~L~~~ns~~NPiIY~~~~~~fR~~~~~lc~ 455 (464)
T 4dkl_A 386 LVVVAVFIVCWTPIHIYVIIKALITIPETTFQTVSWHFCIALGYTNSCLNPVLYAFLDENFKRCFREFCI 455 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhcCCccccchhHHHHHHHHHHhhhchhHHHHHHhhHHHHHHHHHHhc
Confidence 578999999999999999998775422 22344456777899999999999999999999999999864
No 12
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ...
Probab=99.74 E-value=1.4e-17 Score=111.03 Aligned_cols=68 Identities=22% Similarity=0.379 Sum_probs=57.8
Q ss_pred chhhhhHhhchhhHHHHHHHHHhCCCCccchhHHHHHHHHhhcccchhHHHHHHhcHHHHHHHHHHHH
Q psy11836 2 ALLVLINFACWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKHYRRDLVLTLA 69 (112)
Q Consensus 2 ~~iv~~F~icw~Py~i~~l~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~ 69 (112)
++++++|++||+||+++.++...............+..+++++||++||+||++++++||++++++++
T Consensus 256 ~~i~~~f~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nPiiY~~~~~~fR~~~~~~~~ 323 (349)
T 1u19_A 256 IIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLC 323 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHGGGGGTHHHHHHHHTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhHhheecCCcccchHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHhc
Confidence 46788999999999999888777554333455667788899999999999999999999999999985
No 13
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Probab=99.73 E-value=3.4e-18 Score=117.60 Aligned_cols=69 Identities=19% Similarity=0.400 Sum_probs=59.4
Q ss_pred chhhhhHhhchhhHHHHHHHHHhCCCCccchhHHHHHHHHhhcccchhHHHHHHhcHHHHHHHHHHHHhh
Q psy11836 2 ALLVLINFACWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKHYRRDLVLTLARI 71 (112)
Q Consensus 2 ~~iv~~F~icw~Py~i~~l~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~~ 71 (112)
++|+++|++||+||+++.++..+..... ......+..+++++||++||+||++++++||+++++++++.
T Consensus 376 ~~vv~~f~icwlP~~i~~l~~~~~~~~~-~~~~~~~~~~L~~~ns~~NPiIY~~~~~~fR~~~~~ll~~~ 444 (452)
T 3rze_A 376 GFIMAAFILCWIPYFIFFMVIAFCKNCC-NEHLHMFTIWLGYINSTLNPLIYPLCNENFKKTFKRILHIR 444 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCS-CTTTHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHhcccc-cHHHHHHHHHHHHHHhcccchhhhhccHHHHHHHHHHHHhc
Confidence 5789999999999999999988755543 35566688899999999999999999999999999999753
No 14
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Probab=99.72 E-value=5.1e-18 Score=117.17 Aligned_cols=69 Identities=22% Similarity=0.348 Sum_probs=59.2
Q ss_pred chhhhhHhhchhhHHHHHHHHHhCCCCccchhHHHHHHHHhhcccchhHHHHHHhcHHHHHHHHHHHHh
Q psy11836 2 ALLVLINFACWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKHYRRDLVLTLAR 70 (112)
Q Consensus 2 ~~iv~~F~icw~Py~i~~l~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~ 70 (112)
++++++|++||+|++++.++..+............+..+++++||++||+||++++++||+++++++++
T Consensus 264 ~~iv~~F~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~~~~~~~~ 332 (448)
T 2z73_A 264 IVIVSQFLLSWSPYAVVALLAQFGPLEWVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTFPW 332 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHGGGSHHHHHHHHCHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHhHHHHHHHHHHHhCCcccCChHHHHHHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHH
Confidence 567899999999999999998876543344566677888999999999999999999999999999864
No 15
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A*
Probab=99.67 E-value=8.2e-17 Score=105.83 Aligned_cols=67 Identities=18% Similarity=0.335 Sum_probs=57.1
Q ss_pred chhhhhHhhchhhHHHHHHHHHhCCCCccchhHHHHHHHHhhcccchhHHHHHHhcHHHHHHHHHHHHh
Q psy11836 2 ALLVLINFACWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKHYRRDLVLTLAR 70 (112)
Q Consensus 2 ~~iv~~F~icw~Py~i~~l~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~ 70 (112)
++++++|++||+||+++.++..++... ..+....+..+++++||++||+||+ ++++||+++++++++
T Consensus 235 ~~~~~~f~i~~~P~~i~~~~~~~~~~~-~~~~~~~~~~~l~~~ns~~nPiiY~-~~~~fR~~~~~~l~~ 301 (315)
T 4amj_A 235 GIIMGVFTLCWLPFFLVNIVNVFNRDL-VPDWLFVAFNWLGYANSAMNPIIYC-RSPDFRKAFKRLLAF 301 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTS-SCHHHHHHHHHHHHHGGGTHHHHGG-GSHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhccccHHHHc-CcHHHHHHHHHHhCC
Confidence 467888999999999999998876554 3456667778899999999999999 999999999999963
No 16
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Probab=99.67 E-value=1.6e-18 Score=120.72 Aligned_cols=71 Identities=24% Similarity=0.350 Sum_probs=57.2
Q ss_pred CchhhhhHhhchhhHHHHHHHHHhCCCC---------ccchhHHHHHHHHhhcccchhHHHHHHhcHHHHHHHHHHHHhh
Q psy11836 1 MALLVLINFACWAPVTFFALTAALGYPL---------ISVTKSKILLVFFYPINSCFNPYLYALLTKHYRRDLVLTLARI 71 (112)
Q Consensus 1 l~~iv~~F~icw~Py~i~~l~~~~~~~~---------~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~~ 71 (112)
+++|+++|++||+||+++.++..+.... .....+..++.+|+++||++||+||++++++||++++++++++
T Consensus 415 l~~vv~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ns~~NPiIY~~~~~~fR~~~~~ll~~~ 494 (502)
T 3odu_A 415 TVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEALAFFHCCLNPILYAFLGAKFKTSAQHALTSG 494 (502)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTTTTCCCCCCHHHHHSSC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHHHHhcccchhhhhhcCHHHHHHHHHHhccC
Confidence 3578999999999999999987653111 1223345578889999999999999999999999999999753
No 17
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR network, structural genomics, GPCR membrane 7TM NOP ORL1 cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo sapiens}
Probab=99.65 E-value=1.2e-16 Score=110.24 Aligned_cols=69 Identities=28% Similarity=0.496 Sum_probs=52.1
Q ss_pred chhhhhHhhchhhHHHHHHHHHhCCCCcc--chhHHHHHHHHhhcccchhHHHHHHhcHHHHHHHHHHHHh
Q psy11836 2 ALLVLINFACWAPVTFFALTAALGYPLIS--VTKSKILLVFFYPINSCFNPYLYALLTKHYRRDLVLTLAR 70 (112)
Q Consensus 2 ~~iv~~F~icw~Py~i~~l~~~~~~~~~~--~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~ 70 (112)
++++++|++||+||+++.++..+...... ......+..+++++||++||+||++++++||+++++++++
T Consensus 340 ~~vv~~F~i~w~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~lNPiIY~~~~~~fR~~~~~~~~~ 410 (434)
T 4ea3_A 340 LVVVAVFVGCWTPVQVFVLAQGLGVQPSSETAVAILRFCTALGYVNSCLNPILYAFLDENFKACFRKFCCA 410 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 56888999999999999998876543322 1233455667899999999999999999999999998864
No 18
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A*
Probab=99.62 E-value=1.8e-16 Score=111.42 Aligned_cols=66 Identities=23% Similarity=0.388 Sum_probs=56.6
Q ss_pred chhhhhHhhchhhHHHHHHHHHhCCCCccchhHHHHHHHHhhcccchhHHHHHHhcHHHHHHHHHHHH
Q psy11836 2 ALLVLINFACWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKHYRRDLVLTLA 69 (112)
Q Consensus 2 ~~iv~~F~icw~Py~i~~l~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~ 69 (112)
++++++|++||+||+++.++..+.... .......+..+++++||++||+||+ ++++||++++++++
T Consensus 425 ~~iv~~F~lcwlP~~i~~~~~~~~~~~-~~~~~~~~~~~l~~~ns~~NPiIY~-~~~~fR~~~~~~l~ 490 (514)
T 3sn6_R 425 GIIMGTFTLCWLPFFIVNIVHVIQDNL-IRKEVYILLNWIGYVNSGFNPLIYC-RSPDFRIAFQELLC 490 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTS-SCHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccc-cchHHHHHHHHHHHHHHhhhHHhhc-CCHHHHHHHHHHhC
Confidence 567888999999999999998875543 3355677888899999999999999 99999999999885
No 19
>2koe_A Human cannabinoid receptor 1 - helix 7/8 peptide; GPCR, HCB1, membrane protein, signaling protein; NMR {Homo sapiens}
Probab=99.29 E-value=9.1e-14 Score=66.08 Aligned_cols=35 Identities=26% Similarity=0.383 Sum_probs=31.4
Q ss_pred HHHHHHHhhcccchhHHHHHHhcHHHHHHHHHHHH
Q psy11836 35 KILLVFFYPINSCFNPYLYALLTKHYRRDLVLTLA 69 (112)
Q Consensus 35 ~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~ 69 (112)
+.++.+++++||++||+||++.+++||++++++++
T Consensus 3 ~~~~~~l~~~ns~lNPiIY~~~~~~fr~~~~~~~~ 37 (40)
T 2koe_A 3 FAFASMLCLLNSTVNPIIYALRSKDLRHAFRSMFP 37 (40)
T ss_dssp HHHHHHHHHHHHHSSTTTTBTTBHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhh
Confidence 45677899999999999999999999999988764
No 20
>2ki9_A Cannabinoid receptor 2; GPCR, G-protein coupled receptor, membrane protein; NMR {Synthetic}
Probab=98.64 E-value=1.9e-09 Score=48.74 Aligned_cols=22 Identities=23% Similarity=0.587 Sum_probs=18.6
Q ss_pred chhhhhHhhchhhHHHHHHHHH
Q psy11836 2 ALLVLINFACWAPVTFFALTAA 23 (112)
Q Consensus 2 ~~iv~~F~icw~Py~i~~l~~~ 23 (112)
++++++|++||+||++..++..
T Consensus 9 ~~vv~~F~icW~P~~i~~~~~~ 30 (33)
T 2ki9_A 9 GLVLAVLLICWFPVLALMAHSL 30 (33)
T ss_dssp HHHHHHHTTTSSHHHHHHTTTT
T ss_pred HHHHHHHHHHHhHHHHHHHHHH
Confidence 5688999999999999877643
No 21
>2ket_A Cathelicidin-6; antimicrobial peptide, antibiotic, antimicrobial, fungicide, pyrrolidone carboxylic acid, secreted; NMR {Bos taurus}
Probab=85.50 E-value=0.73 Score=18.41 Aligned_cols=14 Identities=14% Similarity=0.496 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHhh
Q psy11836 58 KHYRRDLVLTLARI 71 (112)
Q Consensus 58 ~~fR~~~~~~~~~~ 71 (112)
+.||+.++++++..
T Consensus 4 krfrkkfkklfkkl 17 (27)
T 2ket_A 4 KRFRKKFKKLFKKL 17 (27)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 68999999999764
No 22
>3noh_A Putative peptide binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Ruminococcus gnavus}
Probab=62.88 E-value=1.8 Score=24.90 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=19.8
Q ss_pred chhHHHHHHhcHHHHHHHHHHHH
Q psy11836 47 CFNPYLYALLTKHYRRDLVLTLA 69 (112)
Q Consensus 47 ~~NPiiY~~~~~~fR~~~~~~~~ 69 (112)
|+||.+=.+.+.++|++++....
T Consensus 26 ~iNp~ld~~~~~~~R~~Lka~~~ 48 (139)
T 3noh_A 26 CMNPLLDKLSDEDIREQLKAFVT 48 (139)
T ss_dssp EECTTSGGGCCHHHHHHHHHHHT
T ss_pred EeccccCccccHHHHHHHHHHhc
Confidence 67888888899999999998874
No 23
>1s6c_B Potassium voltage-gated channel subfamily D membe; EF-hand, transport protein; 2.00A {Rattus norvegicus}
Probab=50.30 E-value=6.2 Score=16.75 Aligned_cols=10 Identities=30% Similarity=0.797 Sum_probs=7.8
Q ss_pred hHhhchhhHH
Q psy11836 7 INFACWAPVT 16 (112)
Q Consensus 7 ~F~icw~Py~ 16 (112)
.|+-||+|+-
T Consensus 3 a~v~~w~~fa 12 (30)
T 1s6c_B 3 AGVAAWLPFA 12 (30)
T ss_dssp HHHHTTHHHH
T ss_pred hhhhhhcccc
Confidence 5788999983
No 24
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A
Probab=38.74 E-value=77 Score=20.39 Aligned_cols=19 Identities=11% Similarity=0.085 Sum_probs=11.2
Q ss_pred hcHHHHHHHHHHHHhhhhh
Q psy11836 56 LTKHYRRDLVLTLARIGIC 74 (112)
Q Consensus 56 ~~~~fR~~~~~~~~~~~~~ 74 (112)
.---+-+++++.+++...+
T Consensus 304 iY~~~~~~fR~~~~~~~~~ 322 (364)
T 2ks9_A 304 IYCCLNDRFRLGFKHAFRC 322 (364)
T ss_dssp HHHHHCHHHHHHHHHHHSS
T ss_pred HHHHHhHHHHHHHHHHHhh
Confidence 3334566777777765443
No 25
>1skh_A Major prion protein 2; coil-helix-coil, unknown function; NMR {Bos taurus}
Probab=27.62 E-value=23 Score=14.85 Aligned_cols=13 Identities=31% Similarity=0.608 Sum_probs=5.9
Q ss_pred hchhhHHHHHHHH
Q psy11836 10 ACWAPVTFFALTA 22 (112)
Q Consensus 10 icw~Py~i~~l~~ 22 (112)
-||+=...+.+|.
T Consensus 7 ~cwilvLfva~ws 19 (30)
T 1skh_A 7 GSWILVLFVAMWS 19 (30)
T ss_dssp TTHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHh
Confidence 3555444444443
No 26
>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} PDB: 2l4m_A
Probab=25.61 E-value=17 Score=18.70 Aligned_cols=27 Identities=11% Similarity=0.137 Sum_probs=18.8
Q ss_pred hhHHHHHHHHhhcccc-hhHHHHHHhcH
Q psy11836 32 TKSKILLVFFYPINSC-FNPYLYALLTK 58 (112)
Q Consensus 32 ~~~~~~~~~l~~~ns~-~NPiiY~~~~~ 58 (112)
..+..++.-|++=.+= +||-+|.+.++
T Consensus 25 ~~AL~IAK~LGlktAK~VNp~LY~m~~~ 52 (72)
T 3eyi_A 25 QRALVIAQALGMRTAKDVNRDLYRMKSR 52 (72)
T ss_dssp EEHHHHHHHTTCCSGGGTHHHHHHHHHT
T ss_pred chHHHHHHHhCcchhhhcCHHHHHHHHc
Confidence 4555666777755555 99999987543
No 27
>1btq_A BAND 3 anion transport protein; NMR {} SCOP: j.35.1.1 PDB: 1btr_A
Probab=24.32 E-value=21 Score=14.48 Aligned_cols=15 Identities=27% Similarity=0.523 Sum_probs=8.2
Q ss_pred hhhhhHhhchhhHHH
Q psy11836 3 LLVLINFACWAPVTF 17 (112)
Q Consensus 3 ~iv~~F~icw~Py~i 17 (112)
.++-+|+.|-+|-..
T Consensus 5 a~~FlyFa~l~paIa 19 (26)
T 1btq_A 5 AVIFIYFAALSPAIT 19 (26)
T ss_pred HHHHHHHHHHcchhc
Confidence 345556666666443
No 28
>2v1n_A KIN17, protein KIN homolog; nuclear protein, winged helix motif; NMR {Homo sapiens}
Probab=21.36 E-value=60 Score=18.20 Aligned_cols=15 Identities=27% Similarity=0.616 Sum_probs=13.0
Q ss_pred hcHHHHHHHHHHHHh
Q psy11836 56 LTKHYRRDLVLTLAR 70 (112)
Q Consensus 56 ~~~~fR~~~~~~~~~ 70 (112)
.+++|.++|.++++.
T Consensus 19 fS~eF~~~Fl~lLr~ 33 (111)
T 2v1n_A 19 FSEEFRNDFLELLRR 33 (111)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 468999999999975
Done!