RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11836
(112 letters)
>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family).
This family contains, amongst other G-protein-coupled
receptors (GCPRs), members of the opsin family, which
have been considered to be typical members of the
rhodopsin superfamily. They share several motifs, mainly
the seven transmembrane helices, GCPRs of the rhodopsin
superfamily. All opsins bind a chromophore, such as
11-cis-retinal. The function of most opsins other than
the photoisomerases is split into two steps: light
absorption and G-protein activation. Photoisomerases, on
the other hand, are not coupled to G-proteins - they are
thought to generate and supply the chromophore that is
used by visual opsins.
Length = 251
Score = 33.0 bits (76), Expect = 0.014
Identities = 13/55 (23%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 1 MALLVLINFACWAPVTFFALTAALGYPLIS--VTKSKILLVFFYPINSCFNPYLY 53
+ ++V++ CW P L +L I + + ++ ++ +NSC NP +Y
Sbjct: 197 LLVVVVVFVLCWLPYHIVLLLDSLCPLSIWRLLPTALLITLWLAYVNSCLNPIIY 251
>gnl|CDD|132952 cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of fungal Pek1-like
dual-specificity MAP kinase kinases. Protein kinases
(PKs), MAP kinase kinase(MAPKK) subfamily, fungal
Pek1-like proteins, catalytic (c) domain. PKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine or tyrosine residues on protein
substrates. The MAPKK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein serine/threonine kinases, protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase. The
mitogen-activated protein (MAP) kinase signaling
pathways are important mediators of cellular responses
to extracellular signals. The pathways involve a triple
kinase core cascade comprising of the MAP kinase (MAPK),
which is phosphorylated and activated by a MAPK kinase
(MAPKK or MKK), which itself is phosphorylated and
activated by a MAPK kinase kinase (MAPKKK or MKKK).
Members of this group include the MAPKKs Pek1/Skh1 from
Schizosaccharomyces pombe and MKK2 from Saccharomyces
cerevisiae, and related proteins. Both fission yeast
Pek1 and baker's yeast MKK2 are components of the cell
integrity MAPK pathway. In fission yeast, Pek1
phosphorylates and activates the MAPK Pmk1/Spm1 and is
regulated by the MAPKKK Mkh1. In baker's yeast, the
pathway involves the MAPK Slt2, the MAPKKs MKK1 and
MKK2, and the MAPKKK Bck1. The cell integrity MAPK
cascade is activated by multiple stress conditions, and
is essential in cell wall construction, morphogenesis,
cytokinesis, and ion homeostasis.
Length = 287
Score = 28.2 bits (63), Expect = 0.81
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
Query: 68 LARIGICQERAHKYRMISSGLNGNTGLHSLSSSRKQSHDDIKPRN 112
R G E+ ++ S L G + LHS RK H DIKP N
Sbjct: 96 KKRGGRIGEKVLG-KIAESVLKGLSYLHS----RKIIHRDIKPSN 135
>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant
dual-specificity MAP kinase kinases and similar
proteins. Protein kinases (PKs), MAP kinase kinase
(MAPKK) subfamily, Plant MAPKKs and similar proteins,
catalytic (c) domain. PKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine or
tyrosine residues on protein substrates. The MAPKK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein serine/threonine
kinases, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. The mitogen-activated protein
(MAP) kinase signaling pathways are important mediators
of cellular responses to extracellular signals. The
pathways involve a triple kinase core cascade comprising
of the MAP kinase (MAPK), which is phosphorylated and
activated by a MAPK kinase (MAPKK or MKK), which itself
is phosphorylated and activated by a MAPK kinase kinase
(MAPKKK or MKKK). Members of this group include MAPKKs
from plants, kinetoplastids, alveolates, and mycetozoa.
The MAPKK, LmxPK4, from Leishmania mexicana, is
important in differentiation and virulence.
Dictyostelium discoideum MEK1 is required for proper
chemotaxis. MEK1 null mutants display severe defects in
cell polarization and directional movement. Plants
contain multiple MAPKKs like other eukaryotes. The
Arabidopsis genome encodes for 10 MAPKKs while poplar
and rice contain 13 MAPKKs each. The functions of these
proteins have not been fully elucidated. There is
evidence to suggest that MAPK cascades are involved in
plant stress responses. In Arabidopsis, MKK3 plays a
role in pathogen signaling, MKK2 is involved in cold and
salt stress signaling, MKK4/MKK5 participates in innate
immunity, and MKK7 regulates basal and systemic acquired
resistance.
Length = 264
Score = 27.9 bits (63), Expect = 1.0
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 93 GLHSLSSSRKQSHDDIKPRN 112
GL L + R H DIKP N
Sbjct: 111 GLDYLHTKRHIIHRDIKPSN 130
>gnl|CDD|177679 PLN00047, PLN00047, photosystem II biogenesis protein Psb29;
Provisional.
Length = 283
Score = 27.9 bits (62), Expect = 1.2
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 20 LTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALL-TKHYRR 62
P ++ TK+K L + PI S ++ L LL +H R
Sbjct: 49 AAVTDVPPTVAETKAKFLKSYKRPIPSIYSTVLQELLVQQHLMR 92
>gnl|CDD|215554 PLN03060, PLN03060, inositol phosphatase-like protein;
Provisional.
Length = 206
Score = 26.1 bits (57), Expect = 4.0
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 27 PLISVTKSKILLVFFYPINSCFNPYLYALLTK-HYRR 62
P ++ TK+ L + PI S ++ + LL + H R
Sbjct: 3 PTVADTKASFLKAYRKPIPSIYSNVIQELLVQQHLMR 39
>gnl|CDD|129557 TIGR00465, ilvC, ketol-acid reductoisomerase. This is the second
enzyme in the parallel isoleucine-valine biosynthetic
pathway [Amino acid biosynthesis, Pyruvate family].
Length = 314
Score = 26.2 bits (58), Expect = 4.7
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 66 LTLARIGI-CQERAHKYRMISSGLNGNTGLHSLSSSRKQSHDD 107
T+A IG Q A + SGLN GL +S K++ +D
Sbjct: 4 KTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATED 46
>gnl|CDD|226964 COG4605, CeuC, ABC-type enterochelin transport system, permease
component [Inorganic ion transport and metabolism].
Length = 316
Score = 25.3 bits (56), Expect = 7.4
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 2 ALLVLINFACWAPVTFFA-LTAALGYPLISVTKSKILL 38
A+LV ++ A P+TF L A L Y K LL
Sbjct: 229 AVLVSVSTALVGPITFLGLLVANLAYEFSKTYKHSYLL 266
>gnl|CDD|215036 PLN00034, PLN00034, mitogen-activated protein kinase kinase;
Provisional.
Length = 353
Score = 25.2 bits (55), Expect = 8.4
Identities = 16/44 (36%), Positives = 17/44 (38%), Gaps = 7/44 (15%)
Query: 69 ARIGICQERAHKYRMISSGLNGNTGLHSLSSSRKQSHDDIKPRN 112
I Q A R I L+G LH R H DIKP N
Sbjct: 162 THIADEQFLADVARQI---LSGIAYLHR----RHIVHRDIKPSN 198
>gnl|CDD|225510 COG2962, RarD, Predicted permeases [General function prediction
only].
Length = 293
Score = 25.3 bits (56), Expect = 8.7
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 5/35 (14%)
Query: 2 ALLVLINFA--CWAPVTFFALTAALGY---PLISV 31
ALL+ +N+ WA L A+LGY PL++V
Sbjct: 79 ALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNV 113
>gnl|CDD|193307 pfam12832, MFS_1_like, MFS_1 like family. In fungal members this
domain is found at the C-terminus of putative
transporter proteins.
Length = 77
Score = 24.1 bits (53), Expect = 9.5
Identities = 7/18 (38%), Positives = 8/18 (44%)
Query: 35 KILLVFFYPINSCFNPYL 52
K F+ N C PYL
Sbjct: 6 KAFYFLFFGANGCLYPYL 23
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.328 0.139 0.429
Gapped
Lambda K H
0.267 0.0757 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,567,102
Number of extensions: 474368
Number of successful extensions: 577
Number of sequences better than 10.0: 1
Number of HSP's gapped: 576
Number of HSP's successfully gapped: 23
Length of query: 112
Length of database: 10,937,602
Length adjustment: 76
Effective length of query: 36
Effective length of database: 7,566,698
Effective search space: 272401128
Effective search space used: 272401128
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (24.1 bits)