RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11836
(112 letters)
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 47.2 bits (112), Expect = 1e-07
Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
Query: 1 MALLVLINF-ACWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKH 59
++++++ F W+P AL A G + L V F ++ NP +Y++
Sbjct: 262 ISIVIVSQFLLSWSPYAVVALLAQFGPLEWVTPYAAQLPVMFAKASAIHNPMIYSVSHPK 321
Query: 60 YRRDLVLTLARIGICQERAHK 80
+R + T + C + K
Sbjct: 322 FREAISQTFPWVLTCCQFDDK 342
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide
receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A
2ksb_A
Length = 364
Score = 44.3 bits (105), Expect = 1e-06
Identities = 20/109 (18%), Positives = 35/109 (32%), Gaps = 8/109 (7%)
Query: 1 MALLVLINFA-CWAPVTFFALTAALGYPLISVTKSKILLVFFYPI---NSCFNPYLYALL 56
M ++V+ FA CW P F L + L + + + + ++ +NP +Y L
Sbjct: 249 MMIVVVCTFAICWLPFHIFFLLPYINPDLYLKKFIQQVYLAIMWLAMSSTMYNPIIYCCL 308
Query: 57 TKHYRRDLVLTLARIGICQERAHKYRMISSGLNGNTGLHSLSSSRKQSH 105
+R C + L + S K S
Sbjct: 309 NDRFRLGFKHAFR----CCPFISAGDYEGLEMKSTRYLQTQGSVYKVSR 353
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor,
nanobody, G protein-coupled RE GPCR, signal
transduction, G protein signaling; HET: P0G; 3.20A
{Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A
Length = 514
Score = 43.0 bits (101), Expect = 4e-06
Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 6/96 (6%)
Query: 1 MALLVLINFACWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKHY 60
+ +++ CW P + + LI +L Y +NS FNP +Y + +
Sbjct: 424 LGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYILLNWIGY-VNSGFNPLIYC-RSPDF 481
Query: 61 RRDLVLTLARIGICQERAHKYRMISSGLNGNTGLHS 96
R + + + K NGNTG S
Sbjct: 482 RI----AFQELLCLRRSSLKAYGNGYSSNGNTGEQS 513
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal
protei photoreceptor, signaling protein; HET: MAN NAG
BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2
PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A*
2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A*
1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A*
...
Length = 349
Score = 42.8 bits (101), Expect = 5e-06
Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 1 MALLVLINFA-CWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKH 59
M ++++I F CW P A + FF ++ +NP +Y ++ K
Sbjct: 254 MVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQ 313
Query: 60 YRRDLVLTL 68
+R +V TL
Sbjct: 314 FRNCMVTTL 322
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR
network, structural genomics, GPCR membrane 7TM NOP ORL1
cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo
sapiens}
Length = 434
Score = 42.5 bits (100), Expect = 5e-06
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 1 MALLVLINFACWAPVTFFALTAALGYPLISVTKSKILLVFF---YPINSCFNPYLYALLT 57
+ ++V + CW PV F L LG S T IL Y +NSC NP LYA L
Sbjct: 339 VLVVVAVFVGCWTPVQVFVLAQGLGVQPSSETAVAILRFCTALGY-VNSCLNPILYAFLD 397
Query: 58 KHYRRDL 64
++++
Sbjct: 398 ENFKACF 404
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR
BETA1-adrenoceptor, stabilising mutat biased agonist;
HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A*
2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A*
2ycx_A* 2ycy_A* 2ycz_A*
Length = 315
Score = 41.2 bits (97), Expect = 2e-05
Identities = 14/83 (16%), Positives = 28/83 (33%), Gaps = 4/83 (4%)
Query: 1 MALLVLINFACWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKHY 60
+ +++ + CW P + L+ Y NS NP +Y + +
Sbjct: 234 LGIIMGVFTLCWLPFFLVNIVNVFNRDLVPDWLFVAFNWLGY-ANSAMNPIIYC-RSPDF 291
Query: 61 RR--DLVLTLARIGICQERAHKY 81
R+ +L R + H +
Sbjct: 292 RKAFKRLLAFPRKADRRLHHHHH 314
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion,
lipidic cubic phase, lipidic, mesophase, cholesterol,
membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo
sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A*
3pds_A*
Length = 500
Score = 41.2 bits (96), Expect = 2e-05
Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 6/96 (6%)
Query: 1 MALLVLINFACWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKHY 60
+ +++ CW P + + LI +L Y +NS FNP +Y + +
Sbjct: 410 LGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYILLNWIGY-VNSGFNPLIYC-RSPDF 467
Query: 61 RRDLVLTLARIGICQERAHKYRMISSGLNGNTGLHS 96
R + + + K NGNTG S
Sbjct: 468 RI----AFQELLCLRRSSLKAYGNGYSSNGNTGEQS 499
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR,
membrane protein, LCP, mesophase, structural genomics,
PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Length = 488
Score = 40.9 bits (95), Expect = 3e-05
Identities = 15/93 (16%), Positives = 34/93 (36%), Gaps = 3/93 (3%)
Query: 1 MALLVLINFACWAPVTFFALTAAL--GYPLISVTKSKILLVFFYPINSCFNPYLYALLTK 58
+A++V + CW P+ + + +V + NS NP++YA +
Sbjct: 397 LAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSH-TNSVVNPFIYAYRIR 455
Query: 59 HYRRDLVLTLARIGICQERAHKYRMISSGLNGN 91
+R+ + + Q+ K + +
Sbjct: 456 EFRQTFRKIIRSHVLRQQEPFKAHHHHHHHHHH 488
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural
genomics, PSI-2, protein structure initiative; HET: ITD
OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A*
3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Length = 502
Score = 40.7 bits (95), Expect = 3e-05
Identities = 15/73 (20%), Positives = 22/73 (30%), Gaps = 9/73 (12%)
Query: 1 MALLVLINFACWAP---VTFFALTAALGYPLISVTKSKILLVFFYP------INSCFNPY 51
+L+L FACW P L + + + C NP
Sbjct: 415 TVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEALAFFHCCLNPI 474
Query: 52 LYALLTKHYRRDL 64
LYA L ++
Sbjct: 475 LYAFLGAKFKTSA 487
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics,
PSI-biology, membrane protein, GPCR NET GPCR, hydrolase;
HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Length = 452
Score = 39.7 bits (92), Expect = 6e-05
Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 5/73 (6%)
Query: 10 ACWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKHYRRDLVLTLA 69
CW P F + A + + Y INS NP +Y L +++++ T
Sbjct: 384 LCWIPYFIFFMVIAFCKNCCNEHLHMFTIWLGY-INSTLNPLIYPLCNENFKK----TFK 438
Query: 70 RIGICQERAHKYR 82
RI + + Y
Sbjct: 439 RILHIRSGENLYF 451
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled
receptor, 7 transmembrane receptor, signal
protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A
{Mus musculus} PDB: 4ej4_A* 4djh_A*
Length = 464
Score = 39.2 bits (91), Expect = 7e-05
Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
Query: 3 LLVLINFACWAPVTFFALTAALGYPLIS--VTKSKILLVFFYPINSCFNPYLYALLTKHY 60
++V + CW P+ + + AL + T S + NSC NP LYA L +++
Sbjct: 387 VVVAVFIVCWTPIHIYVIIKALITIPETTFQTVSWHFCIALGYTNSCLNPVLYAFLDENF 446
Query: 61 RRDLVLTLARIGICQER 77
+R E+
Sbjct: 447 KRCFREFCIPTSSTIEQ 463
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G
protein-coupled receptor, GPCR, SI protein-antagonist
complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Length = 467
Score = 38.2 bits (88), Expect = 2e-04
Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 1/62 (1%)
Query: 1 MALLVLINFACWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKHY 60
+ ++L WAP L P I T I Y INS NP YAL +
Sbjct: 390 ILAILLAFIITWAPYNVMVLINTFCAPCIPNTVWTIGYWLCY-INSTINPACYALCNATF 448
Query: 61 RR 62
++
Sbjct: 449 KK 450
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein
engineering, GPCR network, PSI-biology, struct genomics,
membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A
{Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A*
3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Length = 447
Score = 37.7 bits (87), Expect = 3e-04
Identities = 15/85 (17%), Positives = 30/85 (35%), Gaps = 5/85 (5%)
Query: 1 MALLVLINFACWAPVTFFALTAALGYPLISVTKSKILLVFFYP---INSCFNPYLYALLT 57
+A++V + CW P + + L+ NS NP++YA
Sbjct: 356 LAIIVGLFALCWLP--LHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRI 413
Query: 58 KHYRRDLVLTLARIGICQERAHKYR 82
+ +R+ + + Q+ K
Sbjct: 414 REFRQTFRKIIRSHVLRQQEPFKAH 438
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics,
PSI-2, protein structure initiative, AC technologies
center for gene to 3D structure; HET: ETQ MAL; 2.89A
{Homo sapiens}
Length = 481
Score = 35.1 bits (80), Expect = 0.002
Identities = 13/63 (20%), Positives = 22/63 (34%), Gaps = 2/63 (3%)
Query: 1 MALLVLINFACWAP-VTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKH 59
+A+++ CW P L +S Y +NS NP +Y
Sbjct: 403 VAIVLGAFIVCWLPFFLTHVLNTHCQTCHVSPELYSATTWLGY-VNSALNPVIYTTFNIE 461
Query: 60 YRR 62
+R+
Sbjct: 462 FRK 464
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor,
lipid receptor, multiple sclerosi autoimmunity,
structural genomics, PSI-biology; HET: ML5 NAG; 2.80A
{Homo sapiens} PDB: 3v2w_A*
Length = 520
Score = 33.3 bits (75), Expect = 0.009
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 1 MALLVLINFACWAPVTFFALTAALGYPLIS--VTKSKILLVFFYPINSCFNPYLYALLTK 58
+ +++ + ACWAP+ L + +++ LV +NS NP +Y L K
Sbjct: 423 VIIVLSVFIACWAPLFILLLLDVGCKVKTCDILFRAEYFLVLAV-LNSGTNPIIYTLTNK 481
Query: 59 HYRR 62
RR
Sbjct: 482 EMRR 485
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.0 bits (67), Expect = 0.15
Identities = 28/153 (18%), Positives = 46/153 (30%), Gaps = 55/153 (35%)
Query: 7 INFACW------APVTFFALTAALGYPLISVTKSKILLVFFYPINSC---------FNPY 51
+N W P + L+ + PLI V + L + + Y
Sbjct: 213 LNILEWLENPSNTPDKDYLLSIPISCPLIGVIQ----LAHYV--VTAKLLGFTPGELRSY 266
Query: 52 LYALLTKHYRRDLV---------------------LT-LARIGI-CQERAHKY----RMI 84
L + + LV +T L IG+ C E ++
Sbjct: 267 LKGATG--HSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSIL 324
Query: 85 SSGLNGNTGLHS--LS---SSRKQSHDDIKPRN 112
L N G+ S LS +++Q D + N
Sbjct: 325 EDSLENNEGVPSPMLSISNLTQEQVQDYVNKTN 357
>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase,
ATP-binding, disease mutation, nucleoti binding,
phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB:
3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A*
2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A*
3orn_A* 3os3_A* 3sls_A* 1s9i_A*
Length = 360
Score = 26.7 bits (59), Expect = 1.9
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 93 GLHSLSSSRKQSHDDIKPRN 112
GL L K H D+KP N
Sbjct: 143 GLTYLREKHKIMHRDVKPSN 162
>3qaj_A Glutamine synthetase; AMP-PCP, ACP, ligase; HET: GLU ADP RGP CIT
AMP; 3.05A {Bacillus subtilis}
Length = 444
Score = 26.7 bits (60), Expect = 1.9
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 61 RRDLVLTLARIGICQERAH 79
RRD+VL L +G E +H
Sbjct: 169 RRDIVLELEEMGFEIEASH 187
>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7,
activated mutant, ATP-binding, structural genomics,
NPPSFA; 2.45A {Homo sapiens}
Length = 318
Score = 25.8 bits (57), Expect = 3.6
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 93 GLHSLSSSRKQSHDDIKPRN 112
L+ L H D+KP N
Sbjct: 136 ALYYLKEKHGVIHRDVKPSN 155
>3an0_A Dual specificity mitogen-activated protein kinase; auto inhibition
state, activation helix, serine/threonine-PR kinase;
HET: ANK; 2.60A {Homo sapiens} PDB: 3vn9_A*
Length = 340
Score = 25.8 bits (57), Expect = 3.9
Identities = 8/20 (40%), Positives = 9/20 (45%)
Query: 93 GLHSLSSSRKQSHDDIKPRN 112
L L S H D+KP N
Sbjct: 165 ALEHLHSKLSVIHRDVKPSN 184
>3ng0_A Glutamine synthetase; GSI, nitrogen metabolism, synec ligase; HET:
ANP; 2.80A {Synechocystis SP}
Length = 473
Score = 25.6 bits (57), Expect = 3.9
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 61 RRDLVLTLARIGICQERAH 79
R +++LT+A G+ E+ H
Sbjct: 195 RTEMLLTMAAFGVPIEKHH 213
>1f52_A Glutamine synthetase; ADP, MPD, ligase; HET: ADP; 2.49A {Salmonella
typhimurium} SCOP: d.15.9.1 d.128.1.1 PDB: 1f1h_A*
1fpy_A* 1lgr_A* 2lgs_A* 2gls_A
Length = 468
Score = 25.6 bits (57), Expect = 4.7
Identities = 5/19 (26%), Positives = 11/19 (57%)
Query: 61 RRDLVLTLARIGICQERAH 79
R ++ L + ++G+ E H
Sbjct: 192 RSEMCLVMEQMGLVVEAHH 210
>3fme_A Dual specificity mitogen-activated protein kinase; active mutant,
structural genomics consortium, SCG, binding,
nucleotide-binding, phosphoprotein; HET: STU; 2.26A
{Homo sapiens} PDB: 3enm_A
Length = 290
Score = 25.3 bits (56), Expect = 4.7
Identities = 8/20 (40%), Positives = 9/20 (45%)
Query: 93 GLHSLSSSRKQSHDDIKPRN 112
L L S H D+KP N
Sbjct: 121 ALEHLHSKLSVIHRDVKPSN 140
>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP
complex, transferase; HET: ANP; 2.30A {Homo sapiens}
PDB: 3alo_A*
Length = 327
Score = 25.4 bits (56), Expect = 4.7
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 93 GLHSLSSSRKQSHDDIKPRN 112
L+ L + K H DIKP N
Sbjct: 137 ALNHLKENLKIIHRDIKPSN 156
>2bvc_A Glutamine synthetase 1; ligase, transition state mimic; HET: P3S
ADP; 2.1A {Mycobacterium tuberculosis} SCOP: d.15.9.1
d.128.1.1 PDB: 2wgs_A* 2whi_A* 3zxr_A* 3zxv_A* 1hto_A*
1htq_A*
Length = 486
Score = 25.3 bits (56), Expect = 5.5
Identities = 5/19 (26%), Positives = 8/19 (42%)
Query: 61 RRDLVLTLARIGICQERAH 79
R ++ L G E+ H
Sbjct: 207 RDKMLTNLINSGFILEKGH 225
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA
inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA
synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium
smegmatis}
Length = 414
Score = 25.3 bits (56), Expect = 6.1
Identities = 5/12 (41%), Positives = 6/12 (50%)
Query: 53 YALLTKHYRRDL 64
L + HYR D
Sbjct: 317 LGLFSGHYREDR 328
>3khi_A Putative metal-dependent hydrolase; structural genomics, J center
for structural genomics, JCSG, protein structure INI
PSI-2; 1.95A {Klebsiella pneumoniae subsp} PDB: 3dl1_A
Length = 267
Score = 24.9 bits (54), Expect = 6.4
Identities = 5/14 (35%), Positives = 7/14 (50%)
Query: 50 PYLYALLTKHYRRD 63
P L+ YR+D
Sbjct: 234 PALWQRFCHFYRQD 247
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.328 0.139 0.429
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,619,845
Number of extensions: 81686
Number of successful extensions: 258
Number of sequences better than 10.0: 1
Number of HSP's gapped: 251
Number of HSP's successfully gapped: 30
Length of query: 112
Length of database: 6,701,793
Length adjustment: 76
Effective length of query: 36
Effective length of database: 4,579,797
Effective search space: 164872692
Effective search space used: 164872692
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (23.9 bits)