RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11836
         (112 letters)



>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
          Length = 348

 Score = 47.3 bits (111), Expect = 5e-08
 Identities = 15/68 (22%), Positives = 28/68 (41%)

Query: 1   MALLVLINFACWAPVTFFALTAALGYPLISVTKSKILLVFFYPINSCFNPYLYALLTKHY 60
           + ++V+    CW P    A                 +  FF   ++ +NP +Y ++ K +
Sbjct: 254 VIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQF 313

Query: 61  RRDLVLTL 68
           R  +V TL
Sbjct: 314 RNCMVTTL 321


>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 305

 Score = 24.8 bits (53), Expect = 2.7
 Identities = 13/76 (17%), Positives = 20/76 (26%), Gaps = 4/76 (5%)

Query: 37  LLVFFYPINSCFNPYLYALLTKHYRRDLVLTLARIGICQERAHKYRMISSGLNGNTGLHS 96
           L        +     L  +     +                     M+   L G   LHS
Sbjct: 75  LFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHS 134

Query: 97  LSSSRKQSHDDIKPRN 112
                +  H D+KP+N
Sbjct: 135 ----HRVVHRDLKPQN 146


>d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 220

 Score = 24.4 bits (52), Expect = 3.7
 Identities = 4/32 (12%), Positives = 9/32 (28%), Gaps = 1/32 (3%)

Query: 18 FALTAALG-YPLISVTKSKILLVFFYPINSCF 48
          F     +G             ++F +P +   
Sbjct: 10 FEANTTVGRIRFHDFLGDSWGILFSHPRDFTP 41


>d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC
          {Salmonella typhimurium [TaxId: 90371]}
          Length = 186

 Score = 24.0 bits (51), Expect = 4.6
 Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 4/36 (11%)

Query: 18 FALTAALGYPLISVTKS----KILLVFFYPINSCFN 49
          F   A      I VT+     +  + FFYP +  F 
Sbjct: 10 FKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFV 45


>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 348

 Score = 24.1 bits (51), Expect = 5.9
 Identities = 14/78 (17%), Positives = 22/78 (28%), Gaps = 7/78 (8%)

Query: 35  KILLVFFYPINSCFNPYLYALLTKHYRRDLVLTLARIGICQERAHKYRMISSGLNGNTGL 94
            +L VF    +      +Y +          +   +             I  GL     +
Sbjct: 81  GLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKY---I 137

Query: 95  HSLSSSRKQSHDDIKPRN 112
           HS        H D+KP N
Sbjct: 138 HS----ADIIHRDLKPSN 151


>d2d7va1 d.227.1.1 (A:7-161) Hypothetical protein VCA0330 {Vibrio
           cholerae [TaxId: 666]}
          Length = 155

 Score = 23.6 bits (50), Expect = 6.8
 Identities = 3/17 (17%), Positives = 7/17 (41%)

Query: 75  QERAHKYRMISSGLNGN 91
              AH+   I++ +   
Sbjct: 133 HHLAHENCFIANSVETE 149


>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS)
           {Escherichia coli [TaxId: 562]}
          Length = 315

 Score = 23.7 bits (50), Expect = 7.7
 Identities = 6/19 (31%), Positives = 10/19 (52%)

Query: 53  YALLTKHYRRDLVLTLARI 71
           Y L++ HYR  L  +   +
Sbjct: 291 YFLMSGHYRSQLNYSEENL 309


>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein
           kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 322

 Score = 23.5 bits (50), Expect = 8.0
 Identities = 9/20 (45%), Positives = 10/20 (50%)

Query: 93  GLHSLSSSRKQSHDDIKPRN 112
           GL  L    K  H D+KP N
Sbjct: 116 GLTYLREKHKIMHRDVKPSN 135


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.139    0.429 

Gapped
Lambda     K      H
   0.267   0.0462    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 392,934
Number of extensions: 15084
Number of successful extensions: 61
Number of sequences better than 10.0: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 9
Length of query: 112
Length of database: 2,407,596
Length adjustment: 71
Effective length of query: 41
Effective length of database: 1,432,766
Effective search space: 58743406
Effective search space used: 58743406
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (22.5 bits)