Query psy11837
Match_columns 192
No_of_seqs 195 out of 1997
Neff 7.9
Searched_HMMs 46136
Date Fri Aug 16 20:13:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11837.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11837hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0465|consensus 99.9 7.9E-26 1.7E-30 200.2 5.5 148 17-185 563-720 (721)
2 COG0480 FusA Translation elong 99.9 4.8E-24 1E-28 195.8 10.8 126 10-188 566-693 (697)
3 TIGR00490 aEF-2 translation el 99.9 5.8E-24 1.2E-28 197.6 11.0 119 18-191 598-719 (720)
4 PRK07560 elongation factor EF- 99.9 5.2E-23 1.1E-27 191.6 11.8 119 18-191 600-721 (731)
5 PRK00007 elongation factor G; 99.9 3.2E-22 6.9E-27 185.4 11.9 123 11-188 569-693 (693)
6 PLN00116 translation elongatio 99.9 4.3E-22 9.3E-27 187.7 10.6 121 18-191 702-831 (843)
7 KOG0465|consensus 99.8 5.8E-21 1.3E-25 169.5 9.7 120 10-129 598-719 (721)
8 TIGR00484 EF-G translation elo 99.8 1.6E-20 3.5E-25 174.0 11.5 120 11-130 566-687 (689)
9 PRK12739 elongation factor G; 99.8 4.8E-21 1E-25 177.6 7.7 150 18-188 531-690 (691)
10 TIGR00484 EF-G translation elo 99.8 5.1E-21 1.1E-25 177.3 7.4 149 18-187 531-689 (689)
11 PRK12739 elongation factor G; 99.8 2.2E-20 4.8E-25 173.1 11.6 121 11-131 566-688 (691)
12 PTZ00416 elongation factor 2; 99.8 3E-20 6.5E-25 175.1 10.9 112 12-123 685-802 (836)
13 PRK13351 elongation factor G; 99.8 5.1E-20 1.1E-24 170.7 11.5 117 12-128 566-685 (687)
14 PRK13351 elongation factor G; 99.8 2.8E-20 6.1E-25 172.4 6.7 147 17-184 529-686 (687)
15 PF00679 EFG_C: Elongation fac 99.8 2.9E-19 6.4E-24 125.1 10.2 87 40-126 1-88 (89)
16 PRK12740 elongation factor G; 99.8 1.8E-19 3.9E-24 166.6 11.1 118 11-128 548-667 (668)
17 smart00838 EFG_C Elongation fa 99.8 2.8E-19 6.1E-24 124.1 7.1 83 41-123 1-83 (85)
18 cd04098 eEF2_C_snRNP eEF2_C_sn 99.8 6.3E-19 1.4E-23 121.1 7.1 78 43-120 1-80 (80)
19 cd04097 mtEFG1_C mtEFG1_C: C-t 99.8 1.6E-18 3.4E-23 118.5 7.8 78 43-120 1-78 (78)
20 PRK12740 elongation factor G; 99.8 6.2E-19 1.3E-23 163.0 7.0 145 18-183 513-667 (668)
21 cd03710 BipA_TypA_C BipA_TypA_ 99.7 6.8E-18 1.5E-22 115.6 8.6 77 43-119 1-78 (79)
22 PTZ00416 elongation factor 2; 99.7 5.4E-19 1.2E-23 166.6 3.9 151 19-190 646-823 (836)
23 cd03711 Tet_C Tet_C: C-terminu 99.7 4.9E-18 1.1E-22 116.0 7.5 77 43-119 1-77 (78)
24 cd03713 EFG_mtEFG_C EFG_mtEFG_ 99.7 4.8E-18 1E-22 115.9 7.0 78 43-120 1-78 (78)
25 cd04096 eEF2_snRNP_like_C eEF2 99.7 7.4E-18 1.6E-22 115.6 7.0 78 43-120 1-80 (80)
26 cd03709 lepA_C lepA_C: This fa 99.7 1.7E-17 3.7E-22 113.9 7.5 77 43-119 1-79 (80)
27 cd01514 Elongation_Factor_C El 99.7 2.5E-17 5.4E-22 112.6 7.4 78 43-120 1-79 (79)
28 cd04098 eEF2_C_snRNP eEF2_C_sn 99.7 3.3E-17 7.2E-22 112.5 5.4 78 79-175 2-80 (80)
29 cd04096 eEF2_snRNP_like_C eEF2 99.6 1.6E-15 3.5E-20 103.9 4.9 79 79-175 2-80 (80)
30 smart00838 EFG_C Elongation fa 99.6 1.7E-15 3.6E-20 105.1 4.9 81 78-178 3-83 (85)
31 cd04097 mtEFG1_C mtEFG1_C: C-t 99.6 1.7E-15 3.6E-20 103.4 4.7 77 79-175 2-78 (78)
32 PRK05433 GTP-binding protein L 99.6 3E-15 6.6E-20 136.8 5.6 112 40-162 401-513 (600)
33 TIGR01394 TypA_BipA GTP-bindin 99.6 1.3E-14 2.8E-19 132.5 9.3 118 40-168 391-509 (594)
34 TIGR01393 lepA GTP-binding pro 99.5 4.8E-15 1E-19 135.4 5.6 114 38-162 395-510 (595)
35 PF00679 EFG_C: Elongation fac 99.5 7.2E-15 1.6E-19 102.8 4.9 85 79-182 5-89 (89)
36 cd03711 Tet_C Tet_C: C-terminu 99.5 7.9E-15 1.7E-19 100.1 4.8 77 79-175 2-78 (78)
37 KOG0469|consensus 99.5 7.9E-15 1.7E-19 128.7 5.4 105 20-124 703-809 (842)
38 cd03713 EFG_mtEFG_C EFG_mtEFG_ 99.5 1.1E-14 2.5E-19 99.2 4.7 77 79-175 2-78 (78)
39 cd03710 BipA_TypA_C BipA_TypA_ 99.5 1.3E-14 2.9E-19 99.3 4.4 77 79-174 2-78 (79)
40 cd03709 lepA_C lepA_C: This fa 99.5 4.3E-14 9.3E-19 97.0 6.0 77 79-174 2-79 (80)
41 PRK10218 GTP-binding protein; 99.5 5.8E-14 1.3E-18 128.3 8.7 118 40-168 395-514 (607)
42 cd01514 Elongation_Factor_C El 99.5 9E-14 2E-18 94.9 4.7 77 79-175 2-79 (79)
43 KOG0464|consensus 99.4 1.1E-12 2.3E-17 113.4 7.5 114 18-131 633-749 (753)
44 KOG0468|consensus 99.3 2.4E-12 5.2E-17 116.1 3.2 107 19-125 804-912 (971)
45 TIGR01394 TypA_BipA GTP-bindin 99.2 5.1E-12 1.1E-16 115.6 4.5 84 78-180 394-477 (594)
46 PRK10218 GTP-binding protein; 99.2 3.2E-11 7E-16 110.4 5.9 79 78-175 398-476 (607)
47 KOG0467|consensus 99.2 2.5E-11 5.5E-16 110.8 4.5 104 20-123 727-832 (887)
48 KOG0464|consensus 99.1 1.2E-10 2.7E-15 100.8 6.3 147 23-189 594-753 (753)
49 COG0481 LepA Membrane GTPase L 99.1 7E-11 1.5E-15 103.5 4.1 113 40-163 403-517 (603)
50 PRK05433 GTP-binding protein L 99.1 9.3E-11 2E-15 107.5 4.6 77 78-174 404-481 (600)
51 KOG0462|consensus 99.0 3.9E-10 8.6E-15 100.2 5.3 111 41-162 454-566 (650)
52 TIGR01393 lepA GTP-binding pro 99.0 3.9E-10 8.4E-15 103.4 4.8 77 78-173 400-477 (595)
53 COG1217 TypA Predicted membran 98.9 1.8E-09 3.8E-14 94.7 4.9 86 38-123 393-479 (603)
54 KOG0469|consensus 98.8 1.9E-08 4.1E-13 89.1 7.1 152 21-191 658-830 (842)
55 KOG0468|consensus 98.5 6.4E-08 1.4E-12 88.0 2.4 141 22-181 761-913 (971)
56 COG0480 FusA Translation elong 98.4 3.1E-07 6.6E-12 85.4 3.7 88 17-108 531-628 (697)
57 PRK07560 elongation factor EF- 98.2 2E-06 4.4E-11 80.9 4.9 83 18-101 554-648 (731)
58 PRK00007 elongation factor G; 98.1 3.8E-06 8.2E-11 78.6 4.9 83 18-101 534-626 (693)
59 TIGR00490 aEF-2 translation el 98.0 2.6E-06 5.6E-11 80.1 2.7 83 18-101 552-646 (720)
60 PLN00116 translation elongatio 97.9 7.2E-06 1.6E-10 78.3 3.6 79 22-101 660-750 (843)
61 cd01684 Tet_like_IV EF-G_domai 97.7 2.2E-05 4.8E-10 57.3 2.6 51 17-69 51-102 (115)
62 KOG0467|consensus 97.7 4.2E-05 9.2E-10 70.9 4.4 135 22-176 682-830 (887)
63 cd01693 mtEFG2_like_IV mtEF-G2 97.3 0.00026 5.6E-09 51.8 3.9 43 17-60 56-98 (120)
64 TIGR00257 IMPACT_YIGZ uncharac 97.3 0.0036 7.8E-08 50.2 10.1 89 20-109 111-199 (204)
65 PRK11568 hypothetical protein; 97.2 0.0054 1.2E-07 49.2 10.3 89 21-110 112-200 (204)
66 KOG0462|consensus 97.1 0.00093 2E-08 60.3 5.3 77 78-173 456-533 (650)
67 cd01434 EFG_mtEFG1_IV EFG_mtEF 97.0 0.00057 1.2E-08 49.7 3.1 42 18-60 52-93 (116)
68 PF09186 DUF1949: Domain of un 96.8 0.0052 1.1E-07 38.3 5.9 56 50-106 1-56 (56)
69 cd01680 EFG_like_IV Elongation 96.7 0.0017 3.8E-08 46.9 3.6 40 18-58 52-91 (116)
70 PF03764 EFG_IV: Elongation fa 96.5 0.00081 1.8E-08 49.0 0.5 43 17-60 55-97 (120)
71 cd01681 aeEF2_snRNP_like_IV Th 95.7 0.015 3.3E-07 45.4 4.0 44 14-58 98-141 (177)
72 COG0481 LepA Membrane GTPase L 95.1 0.036 7.8E-07 49.7 4.9 77 78-174 406-484 (603)
73 COG1217 TypA Predicted membran 94.5 0.014 2.9E-07 52.2 0.7 83 78-179 398-480 (603)
74 cd01683 EF2_IV_snRNP EF-2_doma 94.4 0.046 1E-06 42.9 3.5 38 20-58 104-141 (178)
75 PRK13760 putative RNA-associat 87.0 1.5 3.2E-05 35.9 5.2 66 44-110 162-228 (231)
76 PF08029 HisG_C: HisG, C-termi 84.2 8.4 0.00018 25.8 7.0 63 45-109 5-68 (75)
77 COG1739 Uncharacterized conser 79.3 9.2 0.0002 30.6 6.8 89 22-110 112-200 (203)
78 TIGR00291 RNA_SBDS rRNA metabo 77.3 4.9 0.00011 32.9 4.7 65 44-109 162-227 (231)
79 PF09377 SBDS_C: SBDS protein 73.2 19 0.0004 26.5 6.5 57 43-99 66-122 (125)
80 COG1500 Predicted exosome subu 72.2 14 0.0003 30.2 6.0 78 31-108 147-226 (234)
81 TIGR03455 HisG_C-term ATP phos 53.5 35 0.00075 24.1 4.6 63 44-108 28-91 (100)
82 PRK13760 putative RNA-associat 52.9 27 0.00058 28.6 4.5 67 80-166 163-229 (231)
83 PF10369 ALS_ss_C: Small subun 51.1 54 0.0012 21.6 5.1 55 45-101 4-58 (75)
84 KOG3333|consensus 38.0 26 0.00056 27.0 2.0 42 3-45 117-158 (188)
85 cd04869 ACT_GcvR_2 ACT domains 33.8 1.3E+02 0.0028 19.3 5.5 58 48-105 2-72 (81)
86 PRK11895 ilvH acetolactate syn 31.0 1.5E+02 0.0033 22.8 5.4 55 45-101 86-140 (161)
87 TIGR00119 acolac_sm acetolacta 29.2 1.7E+02 0.0037 22.4 5.3 56 44-101 84-139 (157)
88 PF14257 DUF4349: Domain of un 28.0 2.1E+02 0.0046 23.3 6.2 41 62-102 70-117 (262)
89 cd03485 MutL_Trans_hPMS_1_like 26.6 1.3E+02 0.0029 21.8 4.3 52 3-56 48-99 (132)
90 cd04872 ACT_1ZPV ACT domain pr 25.0 2.1E+02 0.0046 18.9 5.0 59 47-105 3-69 (88)
91 PRK00194 hypothetical protein; 24.7 1.9E+02 0.0042 19.1 4.6 59 47-105 5-71 (90)
92 TIGR00257 IMPACT_YIGZ uncharac 24.4 3.4E+02 0.0073 21.7 6.5 65 80-165 136-200 (204)
93 CHL00100 ilvH acetohydroxyacid 24.2 2.4E+02 0.0051 22.0 5.4 60 40-101 81-140 (174)
94 PF06200 tify: tify domain; I 22.9 1.5E+02 0.0032 16.9 3.0 25 160-184 4-32 (36)
95 PF08203 RNA_polI_A14: Yeast R 22.3 43 0.00093 22.6 0.8 16 177-192 59-74 (76)
96 PRK10678 moaE molybdopterin gu 20.7 53 0.0012 25.0 1.1 39 148-186 32-70 (150)
97 PLN02390 molybdopterin synthas 20.4 43 0.00094 24.1 0.6 37 150-186 10-46 (111)
98 PF02566 OsmC: OsmC-like prote 20.2 1.6E+02 0.0035 19.7 3.5 42 13-54 2-44 (100)
No 1
>KOG0465|consensus
Probab=99.92 E-value=7.9e-26 Score=200.17 Aligned_cols=148 Identities=18% Similarity=0.265 Sum_probs=126.3
Q ss_pred CChHHHHHHHHHHHHHHHHHcCceeeeeeEEEEEEecCCchhhHH-HHHhhcCceeeeeee----c-----CCeEEEEEe
Q psy11837 17 PRTYVILMCIATGASMALKEAGCILLEPYMYLEIISDEQYVHGIL-ADLSRRRADIRSVED----R-----GSSKVIIAE 86 (192)
Q Consensus 17 ~~~~~~~~a~~~~~~~al~~ag~~l~EPv~~v~I~vp~~~~g~V~-~~l~~rrg~i~~~~~----~-----~~~~~i~~~ 86 (192)
-.|.+|++|+++|+.+++.+ ||+.++|+.+|++.+.++..|+|+ ++++..++...++.. + .|+|.|+++
T Consensus 563 ~~P~~f~pa~ekg~~e~~~~-G~L~ghpl~~~r~~l~Dga~h~vds~elaf~~at~~a~r~a~~~a~p~iLEPIM~Vevt 641 (721)
T KOG0465|consen 563 NVPKQFIPAVEKGFEEIVAK-GPLIGHPLSNLRIVLQDGAHHPVDSSELAFMKATRNAFREAFKRAPPRILEPIMNVEVT 641 (721)
T ss_pred CCchhHHHHHHHHHHHHHhc-CCccCCcccceEEEEecCCcCcccccHHHHHHHHHHHHHHHHHhCCcceeecceeeEEe
Confidence 37889999999999999986 999999999999999999999995 677766554444333 2 479999999
Q ss_pred ecchhhcchhhhhhhhccceEEeeeeecceeecCchHHHHHHhcccCCCcceeccCchhhhhhhhhhhhhhccCceeEEE
Q psy11837 87 APLSELLGYCQRVRTLSSGRSHFSMEFLCFKQVSSQNEAQAVRNITGFDPVIIAEAPLSELLGYCQRVRTLSSGRSHFSM 166 (192)
Q Consensus 87 vP~~~~~~~~~~L~s~T~G~g~~~~~~~~y~~~p~~~~~~i~~~~~~~~~~i~a~~P~~~~~~y~~~lrs~T~G~g~~~~ 166 (192)
+|.+..|.+.++|. +.+|.+... +..+++++|.|++||.+|++|+++|||+|+|+|+|+|
T Consensus 642 ~P~EfqG~Vi~~L~---kR~a~I~~~-----------------d~~~~~~ti~A~VPL~~mfgYss~LRslTqGkgeftM 701 (721)
T KOG0465|consen 642 TPEEFQGTVIGDLN---KRKAQITGI-----------------DSSEDYKTIKAEVPLNEMFGYSSELRSLTQGKGEFTM 701 (721)
T ss_pred cchhhhhhhhhhhh---hcccEEecc-----------------cCCCceEEEEecccHHHHhhhhhhhhhhhcCcceEEE
Confidence 99999999999996 344443210 2345689999999999999999999999999999999
Q ss_pred EecccccCCcHHHHHHHHH
Q psy11837 167 EFLCFKQVSSQNEAQAVRN 185 (192)
Q Consensus 167 ~~~~y~~v~~~~~~~~~~~ 185 (192)
+|++|+|||+++|++++.+
T Consensus 702 Eys~y~p~~~~vq~~~~~~ 720 (721)
T KOG0465|consen 702 EYSRYSPVPPDVQDQLVHK 720 (721)
T ss_pred eecccCCCchHHHHHhhcc
Confidence 9999999999999999865
No 2
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=4.8e-24 Score=195.75 Aligned_cols=126 Identities=32% Similarity=0.501 Sum_probs=113.5
Q ss_pred CCCcccCCCh--HHHHHHHHHHHHHHHHHcCceeeeeeEEEEEEecCCchhhHHHHHhhcCceeeeeeecCCeEEEEEee
Q psy11837 10 QGGRLYSPRT--YVILMCIATGASMALKEAGCILLEPYMYLEIISDEQYVHGILADLSRRRADIRSVEDRGSSKVIIAEA 87 (192)
Q Consensus 10 ~~~~~~~~~~--~~~~~a~~~~~~~al~~ag~~l~EPv~~v~I~vp~~~~g~V~~~l~~rrg~i~~~~~~~~~~~i~~~v 87 (192)
.+|.||++.+ .+|++|+..++++|+.+|.|.++||+|+|+|++|++++|.|+.+|++|||.|.+.+...
T Consensus 566 ~dgs~h~vdss~~af~~a~~~a~~~a~~~a~P~lLEPi~~veI~~P~d~~G~V~~~l~~rRG~I~~~~~~~--------- 636 (697)
T COG0480 566 LDGSYHEVDSSEMAFKIAASLAFKEAMLKAKPVLLEPIMKVEITTPEEYMGDVIGDLNSRRGQILGMEQRP--------- 636 (697)
T ss_pred EcCccccCCCCHHHHHHHHHHHHHHHHhhCCceEecceEEEEEEcchhhhchhHHhhhhcceEEeceeecc---------
Confidence 4677887775 46999999999999999999999999999999999999999999999999999876532
Q ss_pred cchhhcchhhhhhhhccceEEeeeeecceeecCchHHHHHHhcccCCCcceeccCchhhhhhhhhhhhhhccCceeEEEE
Q psy11837 88 PLSELLGYCQRVRTLSSGRSHFSMEFLCFKQVSSQNEAQAVRNITGFDPVIIAEAPLSELLGYCQRVRTLSSGRSHFSME 167 (192)
Q Consensus 88 P~~~~~~~~~~L~s~T~G~g~~~~~~~~y~~~p~~~~~~i~~~~~~~~~~i~a~~P~~~~~~y~~~lrs~T~G~g~~~~~ 167 (192)
| +.+.+|+|.+|++||++|+++|||+|+|||.|+|+
T Consensus 637 -----------------~---------------------------~~~~~i~A~vPl~Emfgya~dLRs~T~Gra~~~m~ 672 (697)
T COG0480 637 -----------------G---------------------------GGLDVIKAEVPLAEMFGYATDLRSATQGRASFSME 672 (697)
T ss_pred -----------------C---------------------------CceEEEEEEechHHhccchhhhHhhcCCceeEEEE
Confidence 1 23468999999999999999999999999999999
Q ss_pred ecccccCCcHHHHHHHHHhCC
Q psy11837 168 FLCFKQVSSQNEAQAVRNITG 188 (192)
Q Consensus 168 ~~~y~~v~~~~~~~~~~~~~~ 188 (192)
|+||++||.+.+++++.+++.
T Consensus 673 f~~y~~vp~~~a~~ii~~~~~ 693 (697)
T COG0480 673 FDHYEEVPSSVAEEIIAKRRK 693 (697)
T ss_pred ecccEeCCHHHHHHHHHHhhh
Confidence 999999999999999977653
No 3
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.90 E-value=5.8e-24 Score=197.64 Aligned_cols=119 Identities=26% Similarity=0.406 Sum_probs=108.0
Q ss_pred ChHHHHHHHHHHHHHHHHHcCceeeeeeEEEEEEecCCchhhHHHHHhhcCceeeeeeecCCeEEEEEeecchhhcchhh
Q psy11837 18 RTYVILMCIATGASMALKEAGCILLEPYMYLEIISDEQYVHGILADLSRRRADIRSVEDRGSSKVIIAEAPLSELLGYCQ 97 (192)
Q Consensus 18 ~~~~~~~a~~~~~~~al~~ag~~l~EPv~~v~I~vp~~~~g~V~~~l~~rrg~i~~~~~~~~~~~i~~~vP~~~~~~~~~ 97 (192)
.+.+|++|++++|++|+.+|+|.++||||.|+|.+|++++|.|+++|++|||.|.+++..
T Consensus 598 ~~~~f~~a~~~a~~~a~~~a~p~LlEPi~~~ei~~p~~~~g~v~~~L~~RRg~i~~~~~~-------------------- 657 (720)
T TIGR00490 598 GPAQVIPAVRSGIFAAMMQAKPVLLEPYQKVFINVPQDMMGAATREIQNRRGQILEMKQE-------------------- 657 (720)
T ss_pred ccchHHHHHHHHHHHHHHhCCCeEecceEEEEEEccHHHHhHHHHHHhhCCceeeeeccC--------------------
Confidence 346799999999999999999999999999999999999999999999999998754210
Q ss_pred hhhhhccceEEeeeeecceeecCchHHHHHHhcccCCCcceeccCchhhhhhhhhhhhhhccCceeEEEEecccccCCcH
Q psy11837 98 RVRTLSSGRSHFSMEFLCFKQVSSQNEAQAVRNITGFDPVIIAEAPLSELLGYCQRVRTLSSGRSHFSMEFLCFKQVSSQ 177 (192)
Q Consensus 98 ~L~s~T~G~g~~~~~~~~y~~~p~~~~~~i~~~~~~~~~~i~a~~P~~~~~~y~~~lrs~T~G~g~~~~~~~~y~~v~~~ 177 (192)
+....|+|.+|++||++|+++|||+|+|+|.|+|+|+||++||++
T Consensus 658 -----------------------------------~~~~~I~A~vP~~e~fgy~~~Lrs~T~G~a~~~~~f~~y~~vp~~ 702 (720)
T TIGR00490 658 -----------------------------------GDMVTIIAKAPVAEMFGFAGAIRGATSGRCLWSTEHAGFELVPQN 702 (720)
T ss_pred -----------------------------------CCcEEEEEEEehHHhcCCcHHHHhhCCCCceEEEEecccccCCHH
Confidence 113668999999999999999999999999999999999999999
Q ss_pred HHHHHH---HHhCCCCC
Q psy11837 178 NEAQAV---RNITGFDP 191 (192)
Q Consensus 178 ~~~~~~---~~~~~~~~ 191 (192)
++++++ +.|||+++
T Consensus 703 ~~~~ii~~~r~rkgl~~ 719 (720)
T TIGR00490 703 LQQEFVMEVRKRKGLKL 719 (720)
T ss_pred HHHHHHHHHHhhcCCCC
Confidence 999988 88889986
No 4
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.89 E-value=5.2e-23 Score=191.62 Aligned_cols=119 Identities=27% Similarity=0.460 Sum_probs=107.7
Q ss_pred ChHHHHHHHHHHHHHHHHHcCceeeeeeEEEEEEecCCchhhHHHHHhhcCceeeeeeecCCeEEEEEeecchhhcchhh
Q psy11837 18 RTYVILMCIATGASMALKEAGCILLEPYMYLEIISDEQYVHGILADLSRRRADIRSVEDRGSSKVIIAEAPLSELLGYCQ 97 (192)
Q Consensus 18 ~~~~~~~a~~~~~~~al~~ag~~l~EPv~~v~I~vp~~~~g~V~~~l~~rrg~i~~~~~~~~~~~i~~~vP~~~~~~~~~ 97 (192)
.+.+|++|+.++|++|+.+|+|.++|||+.|+|.+|++++|.|+++|++|||.|.++...
T Consensus 600 ~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~veI~~p~~~~g~v~~~L~~rrg~i~~~~~~-------------------- 659 (731)
T PRK07560 600 GPAQVIPAVRNAIFAAMLTAKPTLLEPIQKVDINVPQDYMGAVTREIQGRRGKILDMEQE-------------------- 659 (731)
T ss_pred ccchHHHHHHHHHHHHHHhCCCEEeecEEEEEEEecHHHhhHHHHHHHhcCCeeeeeecC--------------------
Confidence 367899999999999999999999999999999999999999999999999988754310
Q ss_pred hhhhhccceEEeeeeecceeecCchHHHHHHhcccCCCcceeccCchhhhhhhhhhhhhhccCceeEEEEecccccCCcH
Q psy11837 98 RVRTLSSGRSHFSMEFLCFKQVSSQNEAQAVRNITGFDPVIIAEAPLSELLGYCQRVRTLSSGRSHFSMEFLCFKQVSSQ 177 (192)
Q Consensus 98 ~L~s~T~G~g~~~~~~~~y~~~p~~~~~~i~~~~~~~~~~i~a~~P~~~~~~y~~~lrs~T~G~g~~~~~~~~y~~v~~~ 177 (192)
+....|+|.+|++||++|+++|||+|+|+|+|+|+|+||++||++
T Consensus 660 -----------------------------------~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~~~ 704 (731)
T PRK07560 660 -----------------------------------GDMAIIEAEAPVAEMFGFAGEIRSATEGRALWSTEFAGFEPVPDS 704 (731)
T ss_pred -----------------------------------CCcEEEEEEEehHHhcCCchHHHhhCcCCceEEEEeccceeCCHH
Confidence 123668999999999999999999999999999999999999999
Q ss_pred HHHHHH---HHhCCCCC
Q psy11837 178 NEAQAV---RNITGFDP 191 (192)
Q Consensus 178 ~~~~~~---~~~~~~~~ 191 (192)
++++++ +.|||+++
T Consensus 705 ~~~~ii~~~r~rKGl~~ 721 (731)
T PRK07560 705 LQLDIVRQIRERKGLKP 721 (731)
T ss_pred HHHHHHHHHHhhCCCCC
Confidence 999987 77889974
No 5
>PRK00007 elongation factor G; Reviewed
Probab=99.87 E-value=3.2e-22 Score=185.38 Aligned_cols=123 Identities=33% Similarity=0.573 Sum_probs=109.8
Q ss_pred CCcccCCCh--HHHHHHHHHHHHHHHHHcCceeeeeeEEEEEEecCCchhhHHHHHhhcCceeeeeeecCCeEEEEEeec
Q psy11837 11 GGRLYSPRT--YVILMCIATGASMALKEAGCILLEPYMYLEIISDEQYVHGILADLSRRRADIRSVEDRGSSKVIIAEAP 88 (192)
Q Consensus 11 ~~~~~~~~~--~~~~~a~~~~~~~al~~ag~~l~EPv~~v~I~vp~~~~g~V~~~l~~rrg~i~~~~~~~~~~~i~~~vP 88 (192)
++.+|++.+ .+|+.|++++|++||++|+|.++|||+.|+|.+|++++|+|+++|++|||.+.++...
T Consensus 569 d~~~~~~ds~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~RRg~i~~~~~~----------- 637 (693)
T PRK00007 569 DGSYHDVDSSEMAFKIAGSMAFKEAAKKANPVLLEPIMKVEVVTPEEYMGDVIGDLNSRRGQIEGMEDR----------- 637 (693)
T ss_pred ecccCCCCCcHHHHHHHHHHHHHHHHHHCCCEEecCcEEEEEEechhhhhhHHHHHHhCCCeEeccccc-----------
Confidence 466776555 4599999999999999999999999999999999999999999999999988654310
Q ss_pred chhhcchhhhhhhhccceEEeeeeecceeecCchHHHHHHhcccCCCcceeccCchhhhhhhhhhhhhhccCceeEEEEe
Q psy11837 89 LSELLGYCQRVRTLSSGRSHFSMEFLCFKQVSSQNEAQAVRNITGFDPVIIAEAPLSELLGYCQRVRTLSSGRSHFSMEF 168 (192)
Q Consensus 89 ~~~~~~~~~~L~s~T~G~g~~~~~~~~y~~~p~~~~~~i~~~~~~~~~~i~a~~P~~~~~~y~~~lrs~T~G~g~~~~~~ 168 (192)
++...|+|.+|++|+++|..+|||+|+|+|+|+++|
T Consensus 638 --------------------------------------------~~~~~i~a~vP~~e~~g~~~~Lrs~T~G~a~~~~~f 673 (693)
T PRK00007 638 --------------------------------------------GGAKVIRAEVPLSEMFGYATDLRSMTQGRATYSMEF 673 (693)
T ss_pred --------------------------------------------CCcEEEEEEcCHHHhhccHHHHHhhcCCceEEEEEe
Confidence 123568999999999999999999999999999999
Q ss_pred cccccCCcHHHHHHHHHhCC
Q psy11837 169 LCFKQVSSQNEAQAVRNITG 188 (192)
Q Consensus 169 ~~y~~v~~~~~~~~~~~~~~ 188 (192)
+||++||++.+++|+++++|
T Consensus 674 ~~y~~v~~~~~~~~~~~~~~ 693 (693)
T PRK00007 674 DHYEEVPKNVAEEIIKKRKG 693 (693)
T ss_pred ceeeECCHHHHHHHHHHhcC
Confidence 99999999999999999876
No 6
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.87 E-value=4.3e-22 Score=187.74 Aligned_cols=121 Identities=26% Similarity=0.262 Sum_probs=104.7
Q ss_pred ChHHHHHHHHHHHHHHHHHcCceeeeeeEEEEEEecCCchhhHHHHHhhcCceeeeeeecCCeEEEEEeecchhhcchhh
Q psy11837 18 RTYVILMCIATGASMALKEAGCILLEPYMYLEIISDEQYVHGILADLSRRRADIRSVEDRGSSKVIIAEAPLSELLGYCQ 97 (192)
Q Consensus 18 ~~~~~~~a~~~~~~~al~~ag~~l~EPv~~v~I~vp~~~~g~V~~~l~~rrg~i~~~~~~~~~~~i~~~vP~~~~~~~~~ 97 (192)
.+.+|++|+++||++||++|+|.++||||.|+|.+|++++|.|+++|++|||.|.+....
T Consensus 702 ~~~~f~~A~~~a~~~Al~~a~p~LlEPi~~veI~~p~~~~G~V~~dL~~RRG~i~~~~~~-------------------- 761 (843)
T PLN00116 702 GGGQIIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQR-------------------- 761 (843)
T ss_pred chhhHHHHHHHHHHHHHHhCCCEEeeceeEEEEEccHHHHhHHHHHHHhcCCccceeeec--------------------
Confidence 345899999999999999999999999999999999999999999999999998754321
Q ss_pred hhhhhccceEEeeeeecceeecCchHHHHHHhcccCCCcceeccCchhhhhhhhhhhhhhccCceeEEEEecccccCCc-
Q psy11837 98 RVRTLSSGRSHFSMEFLCFKQVSSQNEAQAVRNITGFDPVIIAEAPLSELLGYCQRVRTLSSGRSHFSMEFLCFKQVSS- 176 (192)
Q Consensus 98 ~L~s~T~G~g~~~~~~~~y~~~p~~~~~~i~~~~~~~~~~i~a~~P~~~~~~y~~~lrs~T~G~g~~~~~~~~y~~v~~- 176 (192)
.| .....|+|++|++||++|+++|||+|+|+|+|+|+|+||++||+
T Consensus 762 ------~~---------------------------t~~~~I~A~vPl~e~~gy~~~LRs~T~G~g~~~~~f~~y~~v~~d 808 (843)
T PLN00116 762 ------PG---------------------------TPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSD 808 (843)
T ss_pred ------CC---------------------------CceEEEEEEeeHHHHcCCCHHHHhhCCCCCeEEEEeceeEECCCC
Confidence 00 12357899999999999999999999999999999999999973
Q ss_pred -----HHHHHHH---HHhCCCCC
Q psy11837 177 -----QNEAQAV---RNITGFDP 191 (192)
Q Consensus 177 -----~~~~~~~---~~~~~~~~ 191 (192)
+.+.+++ |.|||+++
T Consensus 809 p~~~~~~a~~~~~~~R~rKGl~~ 831 (843)
T PLN00116 809 PLEAGSQAAQLVADIRKRKGLKE 831 (843)
T ss_pred CCCchhHHHHHHHHHHhhCCCCC
Confidence 5666655 88999975
No 7
>KOG0465|consensus
Probab=99.84 E-value=5.8e-21 Score=169.48 Aligned_cols=120 Identities=28% Similarity=0.501 Sum_probs=112.7
Q ss_pred CCCcccCCChH--HHHHHHHHHHHHHHHHcCceeeeeeEEEEEEecCCchhhHHHHHhhcCceeeeeeecCCeEEEEEee
Q psy11837 10 QGGRLYSPRTY--VILMCIATGASMALKEAGCILLEPYMYLEIISDEQYVHGILADLSRRRADIRSVEDRGSSKVIIAEA 87 (192)
Q Consensus 10 ~~~~~~~~~~~--~~~~a~~~~~~~al~~ag~~l~EPv~~v~I~vp~~~~g~V~~~l~~rrg~i~~~~~~~~~~~i~~~v 87 (192)
++|.+|-+.++ +|+.|++.++++|+++|.|.++||+|+|+|++|.++.|.|+.+|++|+|.|.+.+..+++..|++.|
T Consensus 598 ~Dga~h~vds~elaf~~at~~a~r~a~~~a~p~iLEPIM~Vevt~P~EfqG~Vi~~L~kR~a~I~~~d~~~~~~ti~A~V 677 (721)
T KOG0465|consen 598 QDGAHHPVDSSELAFMKATRNAFREAFKRAPPRILEPIMNVEVTTPEEFQGTVIGDLNKRKAQITGIDSSEDYKTIKAEV 677 (721)
T ss_pred ecCCcCcccccHHHHHHHHHHHHHHHHHhCCcceeecceeeEEecchhhhhhhhhhhhhcccEEecccCCCceEEEEecc
Confidence 36777877765 4999999999999999999999999999999999999999999999999999998888899999999
Q ss_pred cchhhcchhhhhhhhccceEEeeeeecceeecCchHHHHHHh
Q psy11837 88 PLSELLGYCQRVRTLSSGRSHFSMEFLCFKQVSSQNEAQAVR 129 (192)
Q Consensus 88 P~~~~~~~~~~L~s~T~G~g~~~~~~~~y~~~p~~~~~~i~~ 129 (192)
|+++|++|.++||++|+|+|.|+|+|+.|.++|++.+++++.
T Consensus 678 PL~~mfgYss~LRslTqGkgeftMEys~y~p~~~~vq~~~~~ 719 (721)
T KOG0465|consen 678 PLNEMFGYSSELRSLTQGKGEFTMEYSRYSPVPPDVQDQLVH 719 (721)
T ss_pred cHHHHhhhhhhhhhhhcCcceEEEeecccCCCchHHHHHhhc
Confidence 999999999999999999999999999999999999887764
No 8
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.83 E-value=1.6e-20 Score=174.04 Aligned_cols=120 Identities=33% Similarity=0.546 Sum_probs=111.0
Q ss_pred CCcccCCCh--HHHHHHHHHHHHHHHHHcCceeeeeeEEEEEEecCCchhhHHHHHhhcCceeeeeeecCCeEEEEEeec
Q psy11837 11 GGRLYSPRT--YVILMCIATGASMALKEAGCILLEPYMYLEIISDEQYVHGILADLSRRRADIRSVEDRGSSKVIIAEAP 88 (192)
Q Consensus 11 ~~~~~~~~~--~~~~~a~~~~~~~al~~ag~~l~EPv~~v~I~vp~~~~g~V~~~l~~rrg~i~~~~~~~~~~~i~~~vP 88 (192)
++.+|++.+ .+|+.|++.++++||.+|+|.++|||+.|+|.+|++++|.|+++|++|||.|.++...++...|++.+|
T Consensus 566 ~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~I~a~vP 645 (689)
T TIGR00484 566 DGSYHDVDSSEMAFKLAASLAFKEAGKKANPVLLEPIMKVEVEVPEEYMGDVMGDLSSRRGIIEGMEARGNVQKIKAEVP 645 (689)
T ss_pred EeecCCCCCCHHHHHHHHHHHHHHHHHhCCCeeecCcEEEEEEecHHHhHhHHHHHHhcCCeEecccccCCcEEEEEEeC
Confidence 466776555 459999999999999999999999999999999999999999999999999998887667899999999
Q ss_pred chhhcchhhhhhhhccceEEeeeeecceeecCchHHHHHHhc
Q psy11837 89 LSELLGYCQRVRTLSSGRSHFSMEFLCFKQVSSQNEAQAVRN 130 (192)
Q Consensus 89 ~~~~~~~~~~L~s~T~G~g~~~~~~~~y~~~p~~~~~~i~~~ 130 (192)
++++++|..+||++|+|+|.+++.|+||+++|++.+++++.+
T Consensus 646 ~~e~~g~~~~Lrs~T~G~~~~~~~f~~y~~v~~~~~~~ii~~ 687 (689)
T TIGR00484 646 LSEMFGYATDLRSFTQGRGTYSMEFLHYGEVPSSVANEIIEK 687 (689)
T ss_pred HHHHhChHHHHHHhcCCceEEEEEeccceeCCHHHHHHHHHh
Confidence 999999999999999999999999999999999998888754
No 9
>PRK12739 elongation factor G; Reviewed
Probab=99.83 E-value=4.8e-21 Score=177.57 Aligned_cols=150 Identities=19% Similarity=0.273 Sum_probs=121.9
Q ss_pred ChHHHHHHHHHHHHHHHHHcCceeeeeeEEEEEEecCCchhhHH-HHHh----hcCceeeeeeec-----CCeEEEEEee
Q psy11837 18 RTYVILMCIATGASMALKEAGCILLEPYMYLEIISDEQYVHGIL-ADLS----RRRADIRSVEDR-----GSSKVIIAEA 87 (192)
Q Consensus 18 ~~~~~~~a~~~~~~~al~~ag~~l~EPv~~v~I~vp~~~~g~V~-~~l~----~rrg~i~~~~~~-----~~~~~i~~~v 87 (192)
.|.+|++|+.+|+++|+++ ||+.+||+.+|++++.+..+|++. ++.+ .++|...++..+ .|++.+++.+
T Consensus 531 ~~~~~~~av~~G~~~a~~~-GpL~g~pv~~v~v~l~d~~~h~~~s~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~ 609 (691)
T PRK12739 531 IPKEYIPAVEKGLEEAMKN-GVLAGYPMVDVKATLYDGSYHDVDSSELAFKIAASMALKEAAKKAGPVILEPIMKVEVVT 609 (691)
T ss_pred CcHHHHHHHHHHHHHHHhc-CCcCCCceeeEEEEEEEeccCCCCCcHHHHHHHHHHHHHHHHHhCCCeeecceEEEEEEE
Confidence 4788999999999999986 999999999999999987776653 3322 333433333332 5799999999
Q ss_pred cchhhcchhhhhhhhccceEEeeeeecceeecCchHHHHHHhcccCCCcceeccCchhhhhhhhhhhhhhccCceeEEEE
Q psy11837 88 PLSELLGYCQRVRTLSSGRSHFSMEFLCFKQVSSQNEAQAVRNITGFDPVIIAEAPLSELLGYCQRVRTLSSGRSHFSME 167 (192)
Q Consensus 88 P~~~~~~~~~~L~s~T~G~g~~~~~~~~y~~~p~~~~~~i~~~~~~~~~~i~a~~P~~~~~~y~~~lrs~T~G~g~~~~~ 167 (192)
|.+.++++..+|.+ .||.+.- . +..++...|+|.+|++|+++|.++||++|+|+|.|+|.
T Consensus 610 p~~~~g~v~~~L~~---RRg~i~~----~-------------~~~~~~~~i~a~vP~~e~~g~~~~Lr~~T~G~a~~~~~ 669 (691)
T PRK12739 610 PEEYMGDVIGDLNR---RRGQIQG----M-------------EARGGAQIVKAFVPLSEMFGYATDLRSATQGRATFSME 669 (691)
T ss_pred chHhhhhHHHHHHh---cCCeEEC----c-------------cccCCcEEEEEEeCHHHhhccHHHHHhhccCceEEEEE
Confidence 99999999999965 3554310 0 11234678999999999999999999999999999999
Q ss_pred ecccccCCcHHHHHHHHHhCC
Q psy11837 168 FLCFKQVSSQNEAQAVRNITG 188 (192)
Q Consensus 168 ~~~y~~v~~~~~~~~~~~~~~ 188 (192)
|+||++||++.+++|+++++|
T Consensus 670 f~~y~~v~~~~~~~ii~~~~~ 690 (691)
T PRK12739 670 FDHYEEVPKNIAEEIIKKRKG 690 (691)
T ss_pred eccceECCHHHHHHHHHHhhc
Confidence 999999999999999999876
No 10
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.83 E-value=5.1e-21 Score=177.32 Aligned_cols=149 Identities=19% Similarity=0.262 Sum_probs=120.7
Q ss_pred ChHHHHHHHHHHHHHHHHHcCceeeeeeEEEEEEecCCchhhHH-HHH----hhcCceeeeeeec-----CCeEEEEEee
Q psy11837 18 RTYVILMCIATGASMALKEAGCILLEPYMYLEIISDEQYVHGIL-ADL----SRRRADIRSVEDR-----GSSKVIIAEA 87 (192)
Q Consensus 18 ~~~~~~~a~~~~~~~al~~ag~~l~EPv~~v~I~vp~~~~g~V~-~~l----~~rrg~i~~~~~~-----~~~~~i~~~v 87 (192)
.|.+|++|+.+|+++++++ ||+.+||+.+|++++.+...|.+. +.+ +.+++...++..+ .|++.+++.+
T Consensus 531 ~~~~~~~av~~g~~~a~~~-GpL~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~ 609 (689)
T TIGR00484 531 IPREYIPAVDKGLQEAMES-GPLAGYPVVDIKATLFDGSYHDVDSSEMAFKLAASLAFKEAGKKANPVLLEPIMKVEVEV 609 (689)
T ss_pred CCHHHHHHHHHHHHHHHhc-CCcCCCceeeEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHhCCCeeecCcEEEEEEe
Confidence 5788999999999999986 999999999999999987766552 222 2344433333332 5799999999
Q ss_pred cchhhcchhhhhhhhccceEEeeeeecceeecCchHHHHHHhcccCCCcceeccCchhhhhhhhhhhhhhccCceeEEEE
Q psy11837 88 PLSELLGYCQRVRTLSSGRSHFSMEFLCFKQVSSQNEAQAVRNITGFDPVIIAEAPLSELLGYCQRVRTLSSGRSHFSME 167 (192)
Q Consensus 88 P~~~~~~~~~~L~s~T~G~g~~~~~~~~y~~~p~~~~~~i~~~~~~~~~~i~a~~P~~~~~~y~~~lrs~T~G~g~~~~~ 167 (192)
|.+.++++..+|.+ .||.+. +. +..+....|+|.+|++|+++|.++||++|+|+|+|++.
T Consensus 610 p~~~~g~v~~~L~~---rrg~i~----~~-------------~~~~~~~~I~a~vP~~e~~g~~~~Lrs~T~G~~~~~~~ 669 (689)
T TIGR00484 610 PEEYMGDVMGDLSS---RRGIIE----GM-------------EARGNVQKIKAEVPLSEMFGYATDLRSFTQGRGTYSME 669 (689)
T ss_pred cHHHhHhHHHHHHh---cCCeEe----cc-------------cccCCcEEEEEEeCHHHHhChHHHHHHhcCCceEEEEE
Confidence 99999999999965 355431 10 11234688999999999999999999999999999999
Q ss_pred ecccccCCcHHHHHHHHHhC
Q psy11837 168 FLCFKQVSSQNEAQAVRNIT 187 (192)
Q Consensus 168 ~~~y~~v~~~~~~~~~~~~~ 187 (192)
|+||++||++.+++||+++|
T Consensus 670 f~~y~~v~~~~~~~ii~~~~ 689 (689)
T TIGR00484 670 FLHYGEVPSSVANEIIEKRK 689 (689)
T ss_pred eccceeCCHHHHHHHHHhcC
Confidence 99999999999999998875
No 11
>PRK12739 elongation factor G; Reviewed
Probab=99.83 E-value=2.2e-20 Score=173.14 Aligned_cols=121 Identities=31% Similarity=0.589 Sum_probs=111.0
Q ss_pred CCcccCCCh--HHHHHHHHHHHHHHHHHcCceeeeeeEEEEEEecCCchhhHHHHHhhcCceeeeeeecCCeEEEEEeec
Q psy11837 11 GGRLYSPRT--YVILMCIATGASMALKEAGCILLEPYMYLEIISDEQYVHGILADLSRRRADIRSVEDRGSSKVIIAEAP 88 (192)
Q Consensus 11 ~~~~~~~~~--~~~~~a~~~~~~~al~~ag~~l~EPv~~v~I~vp~~~~g~V~~~l~~rrg~i~~~~~~~~~~~i~~~vP 88 (192)
+|.+|++.+ .+|+.|++++|++||.+|+|.++|||+.|+|.+|++++|.|+++|++|||.|.++...++...|++.+|
T Consensus 566 d~~~h~~~s~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~RRg~i~~~~~~~~~~~i~a~vP 645 (691)
T PRK12739 566 DGSYHDVDSSELAFKIAASMALKEAAKKAGPVILEPIMKVEVVTPEEYMGDVIGDLNRRRGQIQGMEARGGAQIVKAFVP 645 (691)
T ss_pred EeccCCCCCcHHHHHHHHHHHHHHHHHhCCCeeecceEEEEEEEchHhhhhHHHHHHhcCCeEECccccCCcEEEEEEeC
Confidence 466776554 469999999999999999999999999999999999999999999999999998877666788999999
Q ss_pred chhhcchhhhhhhhccceEEeeeeecceeecCchHHHHHHhcc
Q psy11837 89 LSELLGYCQRVRTLSSGRSHFSMEFLCFKQVSSQNEAQAVRNI 131 (192)
Q Consensus 89 ~~~~~~~~~~L~s~T~G~g~~~~~~~~y~~~p~~~~~~i~~~~ 131 (192)
++++++|..+||+.|+|+|.+++.|+||+++|++.+.+++.+.
T Consensus 646 ~~e~~g~~~~Lr~~T~G~a~~~~~f~~y~~v~~~~~~~ii~~~ 688 (691)
T PRK12739 646 LSEMFGYATDLRSATQGRATFSMEFDHYEEVPKNIAEEIIKKR 688 (691)
T ss_pred HHHhhccHHHHHhhccCceEEEEEeccceECCHHHHHHHHHHh
Confidence 9999999999999999999999999999999999888887643
No 12
>PTZ00416 elongation factor 2; Provisional
Probab=99.82 E-value=3e-20 Score=175.11 Aligned_cols=112 Identities=24% Similarity=0.252 Sum_probs=101.1
Q ss_pred CcccC--C--ChHHHHHHHHHHHHHHHHHcCceeeeeeEEEEEEecCCchhhHHHHHhhcCceeeeeeecC--CeEEEEE
Q psy11837 12 GRLYS--P--RTYVILMCIATGASMALKEAGCILLEPYMYLEIISDEQYVHGILADLSRRRADIRSVEDRG--SSKVIIA 85 (192)
Q Consensus 12 ~~~~~--~--~~~~~~~a~~~~~~~al~~ag~~l~EPv~~v~I~vp~~~~g~V~~~l~~rrg~i~~~~~~~--~~~~i~~ 85 (192)
|.+|+ + .+.+|++|++++|++|+.+|+|+++||||.|+|.+|++++|.|+++|++|||.|.+.+..+ +...|++
T Consensus 685 ~~~h~~~~~~~~~~f~~a~~~a~~~a~~~a~p~LlEPi~~veI~~p~~~lg~V~~dL~~RRG~i~~~~~~~~t~~~~I~a 764 (836)
T PTZ00416 685 VTLHADAIHRGAGQIIPTARRVFYACELTASPRLLEPMFLVDITAPEDAMGGIYSVLNRRRGVVIGEEQRPGTPLSNIKA 764 (836)
T ss_pred eeccccccccchHHHHHHHHHHHHHHHhhCCCEEEeeeEEEEEEEcHHHHhHHHHHHHhcCCCccCcccCCCCCcEEEEE
Confidence 44554 3 3468999999999999999999999999999999999999999999999999998776643 3488999
Q ss_pred eecchhhcchhhhhhhhccceEEeeeeecceeecCchH
Q psy11837 86 EAPLSELLGYCQRVRTLSSGRSHFSMEFLCFKQVSSQN 123 (192)
Q Consensus 86 ~vP~~~~~~~~~~L~s~T~G~g~~~~~~~~y~~~p~~~ 123 (192)
.+|++++++|..+||++|+|+|.+++.|+||+++|+|+
T Consensus 765 ~vP~~e~~gy~~~LRs~T~G~g~~~~~F~~y~~vp~dp 802 (836)
T PTZ00416 765 YLPVAESFGFTAALRAATSGQAFPQCVFDHWQVVPGDP 802 (836)
T ss_pred EEehHHhcCCCHHHHhhCcCCceEEEEeccEEECCCCC
Confidence 99999999999999999999999999999999999775
No 13
>PRK13351 elongation factor G; Reviewed
Probab=99.82 E-value=5.1e-20 Score=170.67 Aligned_cols=117 Identities=36% Similarity=0.556 Sum_probs=106.0
Q ss_pred CcccCCC--hHHHHHHHHHHHHHHHHHcCceeeeeeEEEEEEecCCchhhHHHHHhhcCceeeeeeecCCeEE-EEEeec
Q psy11837 12 GRLYSPR--TYVILMCIATGASMALKEAGCILLEPYMYLEIISDEQYVHGILADLSRRRADIRSVEDRGSSKV-IIAEAP 88 (192)
Q Consensus 12 ~~~~~~~--~~~~~~a~~~~~~~al~~ag~~l~EPv~~v~I~vp~~~~g~V~~~l~~rrg~i~~~~~~~~~~~-i~~~vP 88 (192)
+.+|++. +.+|++|+++++++|+++|+|.++|||+.|+|.+|++++|.|+++|++|||.|.+++..++... |++.+|
T Consensus 566 ~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~~i~a~vP 645 (687)
T PRK13351 566 GKYHPVDSSESAFKAAARKAFLEAFRKANPVLLEPIMELEITVPTEHVGDVLGDLSQRRGRIEGTEPRGDGEVLVKAEAP 645 (687)
T ss_pred ecCCCCCCCHHHHHHHHHHHHHHHHHhCCCeeecceEEEEEEechHhhhhHHHHHHhCCcEEeceecCCCcEEEEEEEEC
Confidence 4556544 4679999999999999999999999999999999999999999999999999998876544444 999999
Q ss_pred chhhcchhhhhhhhccceEEeeeeecceeecCchHHHHHH
Q psy11837 89 LSELLGYCQRVRTLSSGRSHFSMEFLCFKQVSSQNEAQAV 128 (192)
Q Consensus 89 ~~~~~~~~~~L~s~T~G~g~~~~~~~~y~~~p~~~~~~i~ 128 (192)
++++++|..+||+.|+|+|.++++|+||+++|++..++++
T Consensus 646 ~~e~~~~~~~Lrs~T~G~a~~~~~f~~y~~v~~~~~~~~~ 685 (687)
T PRK13351 646 LAELFGYATRLRSMTKGRGSFTMEFSHFDPVPPAVQKKVG 685 (687)
T ss_pred HHHhhChHHHHHhhcCCceEEEEEeccceeCCHHHHHHHh
Confidence 9999999999999999999999999999999998887765
No 14
>PRK13351 elongation factor G; Reviewed
Probab=99.81 E-value=2.8e-20 Score=172.40 Aligned_cols=147 Identities=22% Similarity=0.297 Sum_probs=116.5
Q ss_pred CChHHHHHHHHHHHHHHHHHcCceeeeeeEEEEEEecCCchhhHH-HHHh----hcCceeeeeeec-----CCeEEEEEe
Q psy11837 17 PRTYVILMCIATGASMALKEAGCILLEPYMYLEIISDEQYVHGIL-ADLS----RRRADIRSVEDR-----GSSKVIIAE 86 (192)
Q Consensus 17 ~~~~~~~~a~~~~~~~al~~ag~~l~EPv~~v~I~vp~~~~g~V~-~~l~----~rrg~i~~~~~~-----~~~~~i~~~ 86 (192)
..|.+|++|+.+|+++|+++ ||+.+||+.+|.|++.+..++.+. +..+ .++|...++..+ .|++.+++.
T Consensus 529 ~~~~~~~~ai~~g~~~a~~~-GpL~~~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~ 607 (687)
T PRK13351 529 AIPEELIPAVEKGIREALAS-GPLAGYPVTDLRVTVLDGKYHPVDSSESAFKAAARKAFLEAFRKANPVLLEPIMELEIT 607 (687)
T ss_pred cCCHHHHHHHHHHHHHHHhc-CCCCCCceeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHhCCCeeecceEEEEEE
Confidence 35789999999999999986 999999999999999987776652 2222 334433333322 579999999
Q ss_pred ecchhhcchhhhhhhhccceEEeeeeecceeecCchHHHHHHhcccCCCcc-eeccCchhhhhhhhhhhhhhccCceeEE
Q psy11837 87 APLSELLGYCQRVRTLSSGRSHFSMEFLCFKQVSSQNEAQAVRNITGFDPV-IIAEAPLSELLGYCQRVRTLSSGRSHFS 165 (192)
Q Consensus 87 vP~~~~~~~~~~L~s~T~G~g~~~~~~~~y~~~p~~~~~~i~~~~~~~~~~-i~a~~P~~~~~~y~~~lrs~T~G~g~~~ 165 (192)
+|.++++.+..+|.+ .||.+.- . +..+++.. |+|.+|++||++|..+|||+|+|+|.|+
T Consensus 608 ~p~~~~g~v~~~l~~---rrg~i~~----~-------------~~~~~~~~~i~a~vP~~e~~~~~~~Lrs~T~G~a~~~ 667 (687)
T PRK13351 608 VPTEHVGDVLGDLSQ---RRGRIEG----T-------------EPRGDGEVLVKAEAPLAELFGYATRLRSMTKGRGSFT 667 (687)
T ss_pred echHhhhhHHHHHHh---CCcEEec----e-------------ecCCCcEEEEEEEECHHHhhChHHHHHhhcCCceEEE
Confidence 999999999999965 3454310 0 11123344 9999999999999999999999999999
Q ss_pred EEecccccCCcHHHHHHHH
Q psy11837 166 MEFLCFKQVSSQNEAQAVR 184 (192)
Q Consensus 166 ~~~~~y~~v~~~~~~~~~~ 184 (192)
|+|+||++||++.+++|+.
T Consensus 668 ~~f~~y~~v~~~~~~~~~~ 686 (687)
T PRK13351 668 MEFSHFDPVPPAVQKKVGS 686 (687)
T ss_pred EEeccceeCCHHHHHHHhc
Confidence 9999999999999998874
No 15
>PF00679 EFG_C: Elongation factor G C-terminus; InterPro: IPR000640 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF2 (EF-G) is a G-protein. It brings about the translocation of peptidyl-tRNA and mRNA through a ratchet-like mechanism: the binding of GTP-EF2 to the ribosome causes a counter-clockwise rotation in the small ribosomal subunit; the hydrolysis of GTP to GDP by EF2 and the subsequent release of EF2 causes a clockwise rotation of the small subunit back to the starting position [, ]. This twisting action destabilises tRNA-ribosome interactions, freeing the tRNA to translocate along the ribosome upon GTP-hydrolysis by EF2. EF2 binding also affects the entry and exit channel openings for the mRNA, widening it when bound to enable the mRNA to translocate along the ribosome. This entry represents the C-terminal domain found in EF2 (or EF-G) of both prokaryotes and eukaryotes (also known as eEF2), as well as in some tetracycline-resistance proteins. This domain adopts a ferredoxin-like fold consisting of an alpha/beta sandwich with anti-parallel beta-sheets. It resembles the topology of domain III found in these elongation factors, with which it forms the C-terminal block, but these two domains cannot be superimposed []. This domain is often found associated with (IPR000795 from INTERPRO), which contains the signatures for the N terminus of the proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 1WDT_A 2DY1_A 3CB4_F 3DEG_C 2EFG_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y ....
Probab=99.81 E-value=2.9e-19 Score=125.10 Aligned_cols=87 Identities=41% Similarity=0.693 Sum_probs=81.1
Q ss_pred eeeeeeEEEEEEecCCchhhHHHHHhhcCceeeeeeec-CCeEEEEEeecchhhcchhhhhhhhccceEEeeeeecceee
Q psy11837 40 ILLEPYMYLEIISDEQYVHGILADLSRRRADIRSVEDR-GSSKVIIAEAPLSELLGYCQRVRTLSSGRSHFSMEFLCFKQ 118 (192)
Q Consensus 40 ~l~EPv~~v~I~vp~~~~g~V~~~l~~rrg~i~~~~~~-~~~~~i~~~vP~~~~~~~~~~L~s~T~G~g~~~~~~~~y~~ 118 (192)
+++||++.++|.+|+++.|+|+++|++|||.+.+.... ++.+.|++.+|++++.+|..+|++.|+|+|.+++.|+||++
T Consensus 1 ~LlEP~~~~~I~~p~~~~g~v~~~l~~r~g~i~~~~~~~~~~~~i~~~iP~~~~~gf~~~Lr~~T~G~a~~~~~~~~y~~ 80 (89)
T PF00679_consen 1 VLLEPIMSVEISVPEEYLGKVISDLSKRRGEILSMDPIGGDRVVIEAEIPVRELFGFRSELRSLTSGRASFSMEFSGYRP 80 (89)
T ss_dssp EEEEEEEEEEEEEEGGGHHHHHHHHHHTT-EEEEEEEESTTEEEEEEEEEGGGHTTHHHHHHHHTTTS-EEEEEEEEEEE
T ss_pred CEECCEEEEEEEECHHHHHHHHHHhcccccEEEechhhhhhheeEEEEEChhhhhhHHHHhhccCCCEEEEEEEECeeEE
Confidence 47999999999999999999999999999999999988 78999999999999999999999999999999999999999
Q ss_pred cCchHHHH
Q psy11837 119 VSSQNEAQ 126 (192)
Q Consensus 119 ~p~~~~~~ 126 (192)
++++..++
T Consensus 81 ~~~~~~~~ 88 (89)
T PF00679_consen 81 VPGDILDR 88 (89)
T ss_dssp ESHHHHHH
T ss_pred CCCChhhc
Confidence 99987654
No 16
>PRK12740 elongation factor G; Reviewed
Probab=99.80 E-value=1.8e-19 Score=166.55 Aligned_cols=118 Identities=34% Similarity=0.571 Sum_probs=107.0
Q ss_pred CCcccCCCh--HHHHHHHHHHHHHHHHHcCceeeeeeEEEEEEecCCchhhHHHHHhhcCceeeeeeecCCeEEEEEeec
Q psy11837 11 GGRLYSPRT--YVILMCIATGASMALKEAGCILLEPYMYLEIISDEQYVHGILADLSRRRADIRSVEDRGSSKVIIAEAP 88 (192)
Q Consensus 11 ~~~~~~~~~--~~~~~a~~~~~~~al~~ag~~l~EPv~~v~I~vp~~~~g~V~~~l~~rrg~i~~~~~~~~~~~i~~~vP 88 (192)
++.+|++.+ .+|+.|++.++++|+++|+|.++|||+.|+|.+|+++.|.|+++|++|||.+.+....++...|++.+|
T Consensus 548 ~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~a~~P 627 (668)
T PRK12740 548 DGSYHSVDSSEMAFKIAARLAFREALPKAKPVLLEPIMKVEVSVPEEFVGDVIGDLSSRRGRILGMESRGGGDVVRAEVP 627 (668)
T ss_pred ecccccCCCCHHHHHHHHHHHHHHHHHhcCCeeecceEEEEEEechhhhhhHHHHHHhCCCeEeccccCCCCEEEEEEcC
Confidence 455666544 469999999999999999999999999999999999999999999999999998876544589999999
Q ss_pred chhhcchhhhhhhhccceEEeeeeecceeecCchHHHHHH
Q psy11837 89 LSELLGYCQRVRTLSSGRSHFSMEFLCFKQVSSQNEAQAV 128 (192)
Q Consensus 89 ~~~~~~~~~~L~s~T~G~g~~~~~~~~y~~~p~~~~~~i~ 128 (192)
++++++|..+||+.|+|+|.+++.|+||+++|++..++++
T Consensus 628 ~~e~~g~~~~Lr~~T~G~a~~~~~f~~y~~~~~~~~~~~~ 667 (668)
T PRK12740 628 LAEMFGYATDLRSLTQGRGSFSMEFSHYEEVPGNVAEKVI 667 (668)
T ss_pred HHHhhchHHHHHHhcCCeEEEEEEecccccCCHHHHHHHh
Confidence 9999999999999999999999999999999988776654
No 17
>smart00838 EFG_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of Elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopt a ferredoxin-like fold.
Probab=99.79 E-value=2.8e-19 Score=124.11 Aligned_cols=83 Identities=40% Similarity=0.742 Sum_probs=78.3
Q ss_pred eeeeeEEEEEEecCCchhhHHHHHhhcCceeeeeeecCCeEEEEEeecchhhcchhhhhhhhccceEEeeeeecceeecC
Q psy11837 41 LLEPYMYLEIISDEQYVHGILADLSRRRADIRSVEDRGSSKVIIAEAPLSELLGYCQRVRTLSSGRSHFSMEFLCFKQVS 120 (192)
Q Consensus 41 l~EPv~~v~I~vp~~~~g~V~~~l~~rrg~i~~~~~~~~~~~i~~~vP~~~~~~~~~~L~s~T~G~g~~~~~~~~y~~~p 120 (192)
++||++.++|.+|+++.|+|+++|++|||.+.+++..++...|++.+|++++++|..+|++.|+|+|.++++|++|+++|
T Consensus 1 llEPi~~~~I~~p~~~~g~v~~~l~~rrG~i~~~~~~~~~~~i~~~iP~~~~~~~~~~Lrs~T~G~~~~~~~f~~y~~~~ 80 (85)
T smart00838 1 LLEPIMKVEVTVPEEYMGDVIGDLNSRRGKIEGMEQRGGAQVIKAKVPLSEMFGYATDLRSATQGRATWSMEFSHYEEVP 80 (85)
T ss_pred CcCCEEEEEEEeCHHHHHHHHHHHHHcCCEEECeeccCCcEEEEEECCHHHHhchHHHHHHhcCCeEEEEEEeCcceECC
Confidence 57999999999999999999999999999999888766788999999999999999999999999999999999999998
Q ss_pred chH
Q psy11837 121 SQN 123 (192)
Q Consensus 121 ~~~ 123 (192)
++.
T Consensus 81 ~~~ 83 (85)
T smart00838 81 KSI 83 (85)
T ss_pred hhh
Confidence 653
No 18
>cd04098 eEF2_C_snRNP eEF2_C_snRNP: This family includes a C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to the C-terminal domain of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.78 E-value=6.3e-19 Score=121.11 Aligned_cols=78 Identities=23% Similarity=0.288 Sum_probs=72.8
Q ss_pred eeeEEEEEEecCCchhhHHHHHhhcCceeeeeeecCCe--EEEEEeecchhhcchhhhhhhhccceEEeeeeecceeecC
Q psy11837 43 EPYMYLEIISDEQYVHGILADLSRRRADIRSVEDRGSS--KVIIAEAPLSELLGYCQRVRTLSSGRSHFSMEFLCFKQVS 120 (192)
Q Consensus 43 EPv~~v~I~vp~~~~g~V~~~l~~rrg~i~~~~~~~~~--~~i~~~vP~~~~~~~~~~L~s~T~G~g~~~~~~~~y~~~p 120 (192)
|||+.|+|++|+++.|+|+++|++|||.|.+.+..++. ..|++.+|++++++|..+||+.|+|+|.+++.|+||+++|
T Consensus 1 EPi~~~ei~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~i~a~vP~~e~~~~~~~Lrs~T~G~~~~~~~f~~y~~v~ 80 (80)
T cd04098 1 EPIYEVEITCPADAVSAVYEVLSRRRGHVIYDTPIPGTPLYEVKAFIPVIESFGFETDLRVHTQGQAFCQSVFDHWQIVP 80 (80)
T ss_pred CCEEEEEEEECHHHHhHHHHHHhhCCcEEeeeeccCCCCcEEEEEECCHHHHhChHHHHHhhCCCceEEEEEeCeeeECc
Confidence 89999999999999999999999999999987764333 8899999999999999999999999999999999999875
No 19
>cd04097 mtEFG1_C mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals (desig
Probab=99.77 E-value=1.6e-18 Score=118.50 Aligned_cols=78 Identities=27% Similarity=0.580 Sum_probs=74.8
Q ss_pred eeeEEEEEEecCCchhhHHHHHhhcCceeeeeeecCCeEEEEEeecchhhcchhhhhhhhccceEEeeeeecceeecC
Q psy11837 43 EPYMYLEIISDEQYVHGILADLSRRRADIRSVEDRGSSKVIIAEAPLSELLGYCQRVRTLSSGRSHFSMEFLCFKQVS 120 (192)
Q Consensus 43 EPv~~v~I~vp~~~~g~V~~~l~~rrg~i~~~~~~~~~~~i~~~vP~~~~~~~~~~L~s~T~G~g~~~~~~~~y~~~p 120 (192)
||++.++|.+|+++.|+|+++|++|||.+.+.+..++...|++.+|++++++|..+|++.|+|+|.++++|++|+++|
T Consensus 1 EPi~~~~I~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~~~~P~~e~~g~~~~Lr~~T~G~~~~~~~f~~y~~~~ 78 (78)
T cd04097 1 EPIMKVEVTAPTEFQGNVIGLLNKRKGTIVDTDTGEDEFTLEAEVPLNDMFGYSTELRSMTQGKGEFSMEFSRYAPVP 78 (78)
T ss_pred CCEEEEEEEecHHHHHHHHHHHHHCCCEEeceEecCCeEEEEEEECHHHhhChHHHHHhhCCCcEEEEEEecceEECc
Confidence 899999999999999999999999999999988766788999999999999999999999999999999999999875
No 20
>PRK12740 elongation factor G; Reviewed
Probab=99.76 E-value=6.2e-19 Score=163.01 Aligned_cols=145 Identities=20% Similarity=0.310 Sum_probs=114.4
Q ss_pred ChHHHHHHHHHHHHHHHHHcCceeeeeeEEEEEEecCCchhhHH-HHHh----hcCceeeeeee-----cCCeEEEEEee
Q psy11837 18 RTYVILMCIATGASMALKEAGCILLEPYMYLEIISDEQYVHGIL-ADLS----RRRADIRSVED-----RGSSKVIIAEA 87 (192)
Q Consensus 18 ~~~~~~~a~~~~~~~al~~ag~~l~EPv~~v~I~vp~~~~g~V~-~~l~----~rrg~i~~~~~-----~~~~~~i~~~v 87 (192)
.|.+|++|+.+|+++|+++ ||+.+||+.+|.|++.+...+.+. ++.+ .+++...++.. ..|++.+++.+
T Consensus 513 ~~~~~~~ai~~g~~~a~~~-Gpl~g~p~~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~ 591 (668)
T PRK12740 513 VPRQYIPAVEKGVREALEK-GVLAGYPVVDVKVTLTDGSYHSVDSSEMAFKIAARLAFREALPKAKPVLLEPIMKVEVSV 591 (668)
T ss_pred ccHHHHHHHHHHHHHHHhc-CCcCCCceeeEEEEEEecccccCCCCHHHHHHHHHHHHHHHHHhcCCeeecceEEEEEEe
Confidence 4678999999999999986 999999999999999987766542 2222 23333333322 25799999999
Q ss_pred cchhhcchhhhhhhhccceEEeeeeecceeecCchHHHHHHhcccCCCcceeccCchhhhhhhhhhhhhhccCceeEEEE
Q psy11837 88 PLSELLGYCQRVRTLSSGRSHFSMEFLCFKQVSSQNEAQAVRNITGFDPVIIAEAPLSELLGYCQRVRTLSSGRSHFSME 167 (192)
Q Consensus 88 P~~~~~~~~~~L~s~T~G~g~~~~~~~~y~~~p~~~~~~i~~~~~~~~~~i~a~~P~~~~~~y~~~lrs~T~G~g~~~~~ 167 (192)
|.+.++.+.++|.. .+|.+.- . +.......|+|.+|++|+++|..+||++|+|+|+|+++
T Consensus 592 p~~~~g~v~~~l~~---rrg~i~~----~-------------~~~~~~~~i~a~~P~~e~~g~~~~Lr~~T~G~a~~~~~ 651 (668)
T PRK12740 592 PEEFVGDVIGDLSS---RRGRILG----M-------------ESRGGGDVVRAEVPLAEMFGYATDLRSLTQGRGSFSME 651 (668)
T ss_pred chhhhhhHHHHHHh---CCCeEec----c-------------ccCCCCEEEEEEcCHHHhhchHHHHHHhcCCeEEEEEE
Confidence 99999999999965 3554211 0 01122388999999999999999999999999999999
Q ss_pred ecccccCCcHHHHHHH
Q psy11837 168 FLCFKQVSSQNEAQAV 183 (192)
Q Consensus 168 ~~~y~~v~~~~~~~~~ 183 (192)
|+||++||++.+++++
T Consensus 652 f~~y~~~~~~~~~~~~ 667 (668)
T PRK12740 652 FSHYEEVPGNVAEKVI 667 (668)
T ss_pred ecccccCCHHHHHHHh
Confidence 9999999998888876
No 21
>cd03710 BipA_TypA_C BipA_TypA_C: a C-terminal portion of BipA or TypA having homology to the C terminal domains of the elongation factors EF-G and EF-2. A member of the ribosome binding GTPase superfamily, BipA is widely distributed in bacteria and plants. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secreti
Probab=99.75 E-value=6.8e-18 Score=115.64 Aligned_cols=77 Identities=21% Similarity=0.351 Sum_probs=73.5
Q ss_pred eeeEEEEEEecCCchhhHHHHHhhcCceeeeeeecC-CeEEEEEeecchhhcchhhhhhhhccceEEeeeeecceeec
Q psy11837 43 EPYMYLEIISDEQYVHGILADLSRRRADIRSVEDRG-SSKVIIAEAPLSELLGYCQRVRTLSSGRSHFSMEFLCFKQV 119 (192)
Q Consensus 43 EPv~~v~I~vp~~~~g~V~~~l~~rrg~i~~~~~~~-~~~~i~~~vP~~~~~~~~~~L~s~T~G~g~~~~~~~~y~~~ 119 (192)
||++.++|.+|+++.|+|+++|++|||.+.+++..+ +...|++.+|++++++|..+|++.|+|+|.++++|+||++.
T Consensus 1 EPi~~v~I~~P~~~~g~V~~~l~~rrg~i~~~~~~~~~~~~i~~~~P~~~~~~~~~~Lrs~T~G~a~~~~~f~~y~~~ 78 (79)
T cd03710 1 EPIEELTIDVPEEYSGAVIEKLGKRKGEMVDMEPDGNGRTRLEFKIPSRGLIGFRSEFLTDTRGTGIMNHVFDGYEPY 78 (79)
T ss_pred CCEEEEEEEeCchhhHHHHHHHHhCCCEEEccEECCCCEEEEEEEECHHHHcCcHHHHHhhCCCeEEEEEEecccEec
Confidence 899999999999999999999999999999988765 68899999999999999999999999999999999999874
No 22
>PTZ00416 elongation factor 2; Provisional
Probab=99.75 E-value=5.4e-19 Score=166.63 Aligned_cols=151 Identities=17% Similarity=0.124 Sum_probs=116.2
Q ss_pred hHHHHH----HHHHHHHHHHHHcCceeeeeeEEEEEEecCCchhh--HHH---H--HhhcCceeeeeeec-----CCeEE
Q psy11837 19 TYVILM----CIATGASMALKEAGCILLEPYMYLEIISDEQYVHG--ILA---D--LSRRRADIRSVEDR-----GSSKV 82 (192)
Q Consensus 19 ~~~~~~----a~~~~~~~al~~ag~~l~EPv~~v~I~vp~~~~g~--V~~---~--l~~rrg~i~~~~~~-----~~~~~ 82 (192)
+.+|++ |+.+|+++|+++ ||+.+|||.+|.|++.+..++. +.+ . .+.++|...++..+ .|++.
T Consensus 646 ~~~~~~~~~~av~~G~~~a~~~-GpL~g~pv~dv~v~l~d~~~h~~~~~~~~~~f~~a~~~a~~~a~~~a~p~LlEPi~~ 724 (836)
T PTZ00416 646 GVQYMNEIKDSCVSAFQWATKE-GVLCDENMRGIRFNILDVTLHADAIHRGAGQIIPTARRVFYACELTASPRLLEPMFL 724 (836)
T ss_pred cccchHHHHHHHHHHHHHHHhc-CcccCCcccceEEEEEEeeccccccccchHHHHHHHHHHHHHHHhhCCCEEEeeeEE
Confidence 344555 999999999986 9999999999999999877665 311 1 12445544444443 47999
Q ss_pred EEEeecchhhcchhhhhhhhccceEEeeeeecceeecCchHHHHHHhcccCC--CcceeccCchhhhhhhhhhhhhhccC
Q psy11837 83 IIAEAPLSELLGYCQRVRTLSSGRSHFSMEFLCFKQVSSQNEAQAVRNITGF--DPVIIAEAPLSELLGYCQRVRTLSSG 160 (192)
Q Consensus 83 i~~~vP~~~~~~~~~~L~s~T~G~g~~~~~~~~y~~~p~~~~~~i~~~~~~~--~~~i~a~~P~~~~~~y~~~lrs~T~G 160 (192)
+++.+|.+.++.+.++|.+ .||.+.- - +..++ ..+|+|.+|++||++|+++|||+|+|
T Consensus 725 veI~~p~~~lg~V~~dL~~---RRG~i~~----~-------------~~~~~t~~~~I~a~vP~~e~~gy~~~LRs~T~G 784 (836)
T PTZ00416 725 VDITAPEDAMGGIYSVLNR---RRGVVIG----E-------------EQRPGTPLSNIKAYLPVAESFGFTAALRAATSG 784 (836)
T ss_pred EEEEEcHHHHhHHHHHHHh---cCCCccC----c-------------ccCCCCCcEEEEEEEehHHhcCCCHHHHhhCcC
Confidence 9999999999999999965 3444210 0 11122 37899999999999999999999999
Q ss_pred ceeEEEEecccccCCc------HHHHHHH---HHhCCCC
Q psy11837 161 RSHFSMEFLCFKQVSS------QNEAQAV---RNITGFD 190 (192)
Q Consensus 161 ~g~~~~~~~~y~~v~~------~~~~~~~---~~~~~~~ 190 (192)
+|.|+|+|+||++||+ +.+.+++ |.|||++
T Consensus 785 ~g~~~~~F~~y~~vp~dp~~~~~~a~~~~~~~R~rKGl~ 823 (836)
T PTZ00416 785 QAFPQCVFDHWQVVPGDPLEPGSKANEIVLSIRKRKGLK 823 (836)
T ss_pred CceEEEEeccEEECCCCCCCchhHHHHHHHHHHHhCCCC
Confidence 9999999999999984 4555555 8899996
No 23
>cd03711 Tet_C Tet_C: C-terminus of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to the C terminal domains of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=99.75 E-value=4.9e-18 Score=116.03 Aligned_cols=77 Identities=17% Similarity=0.359 Sum_probs=74.2
Q ss_pred eeeEEEEEEecCCchhhHHHHHhhcCceeeeeeecCCeEEEEEeecchhhcchhhhhhhhccceEEeeeeecceeec
Q psy11837 43 EPYMYLEIISDEQYVHGILADLSRRRADIRSVEDRGSSKVIIAEAPLSELLGYCQRVRTLSSGRSHFSMEFLCFKQV 119 (192)
Q Consensus 43 EPv~~v~I~vp~~~~g~V~~~l~~rrg~i~~~~~~~~~~~i~~~vP~~~~~~~~~~L~s~T~G~g~~~~~~~~y~~~ 119 (192)
|||+.++|.+|+++.|+|+++|++|||.+.+....++...|++.+|++++++|..+|++.|+|+|.+++.|+||+++
T Consensus 1 EPi~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~~~~P~~~~~g~~~~Lr~~T~G~~~~~~~f~~y~~~ 77 (78)
T cd03711 1 EPYLRFELEVPQDALGRAMSDLAKMGATFEDPQIKGDEVTLEGTIPVATSQDYQSELPSYTHGEGVLETEFKGYRPC 77 (78)
T ss_pred CCeEEEEEEcCHHHHHHHHHHHHHcCCEeeCcEecCCEEEEEEEECHHHHhhHHHHhHhhcCCeEEEEEEeCCeEEC
Confidence 89999999999999999999999999999998876788999999999999999999999999999999999999986
No 24
>cd03713 EFG_mtEFG_C EFG_mtEFG_C: domains similar to the C-terminal domain of the bacterial translational elongation factor (EF) EF-G. Included in this group is the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2) proteins. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide
Probab=99.74 E-value=4.8e-18 Score=115.95 Aligned_cols=78 Identities=44% Similarity=0.777 Sum_probs=74.6
Q ss_pred eeeEEEEEEecCCchhhHHHHHhhcCceeeeeeecCCeEEEEEeecchhhcchhhhhhhhccceEEeeeeecceeecC
Q psy11837 43 EPYMYLEIISDEQYVHGILADLSRRRADIRSVEDRGSSKVIIAEAPLSELLGYCQRVRTLSSGRSHFSMEFLCFKQVS 120 (192)
Q Consensus 43 EPv~~v~I~vp~~~~g~V~~~l~~rrg~i~~~~~~~~~~~i~~~vP~~~~~~~~~~L~s~T~G~g~~~~~~~~y~~~p 120 (192)
|||+.|+|.+|+++.|+|+++|++|||.+.+.+..++...|++.+|++++++|..+|++.|+|+|.++++|+||+++|
T Consensus 1 EPi~~~~I~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~~~iP~~e~~~~~~~Lr~~T~G~a~~~~~f~~y~~~~ 78 (78)
T cd03713 1 EPIMKVEVTVPEEYMGDVIGDLSSRRGQILGTESRGGWKVIKAEVPLAEMFGYSTDLRSLTQGRGSFTMEFSHYEEVP 78 (78)
T ss_pred CCEEEEEEEcCHHHHHHHHHHHHHcCCceEceeccCCcEEEEEEcCHHHHhChHHHHHhhcCCeEEEEEEecceeECc
Confidence 899999999999999999999999999999888766788999999999999999999999999999999999999875
No 25
>cd04096 eEF2_snRNP_like_C eEF2_snRNP_like_C: this family represents a C-terminal domain of eukaryotic elongation factor 2 (eEF-2) and a homologous domain of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.73 E-value=7.4e-18 Score=115.61 Aligned_cols=78 Identities=27% Similarity=0.367 Sum_probs=73.2
Q ss_pred eeeEEEEEEecCCchhhHHHHHhhcCceeeeeeecC--CeEEEEEeecchhhcchhhhhhhhccceEEeeeeecceeecC
Q psy11837 43 EPYMYLEIISDEQYVHGILADLSRRRADIRSVEDRG--SSKVIIAEAPLSELLGYCQRVRTLSSGRSHFSMEFLCFKQVS 120 (192)
Q Consensus 43 EPv~~v~I~vp~~~~g~V~~~l~~rrg~i~~~~~~~--~~~~i~~~vP~~~~~~~~~~L~s~T~G~g~~~~~~~~y~~~p 120 (192)
||++.++|.+|+++.|+|+++|++|||.+.+....+ +...|++.+|++++++|..+|+++|+|+|.+++.|++|+++|
T Consensus 1 EPi~~~~I~~p~~~~g~V~~~l~~rrg~i~~~~~~~~~~~~~i~~~iP~~e~~~~~~~Lrs~T~G~~~~~~~f~~y~~~~ 80 (80)
T cd04096 1 EPIYLVEIQCPEDALGKVYSVLSKRRGHVLSEEPKEGTPLFEIKAYLPVIESFGFETDLRSATSGQAFPQLVFSHWEIVP 80 (80)
T ss_pred CCEEEEEEEEcHHHhhHHHHhhhhCeeEEeEEeecCCCccEEEEEEEeHHHHhCcHHHHHhhCCCCcEEEEEeceeEECc
Confidence 899999999999999999999999999999887653 458899999999999999999999999999999999999875
No 26
>cd03709 lepA_C lepA_C: This family represents the C-terminal region of LepA, a GTP-binding protein localized in the cytoplasmic membrane. LepA is ubiquitous in Bacteria and Eukaryota (e.g. Saccharomyces cerevisiae GUF1p), but is missing from Archaea. LepA exhibits significant homology to elongation factors (EFs) Tu and G. The function(s) of the proteins in this family are unknown. The N-terminal domain of LepA is homologous to a domain of similar size found in initiation factor 2 (IF2), and in EF-Tu and EF-G (factors required for translation in Escherichia coli). Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including S. cerevisiae GUF1) originated within the bacterial LepA family. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=99.72 E-value=1.7e-17 Score=113.93 Aligned_cols=77 Identities=21% Similarity=0.471 Sum_probs=72.8
Q ss_pred eeeEEEEEEecCCchhhHHHHHhhcCceeeeeeecC-CeEEEEEeecchhh-cchhhhhhhhccceEEeeeeecceeec
Q psy11837 43 EPYMYLEIISDEQYVHGILADLSRRRADIRSVEDRG-SSKVIIAEAPLSEL-LGYCQRVRTLSSGRSHFSMEFLCFKQV 119 (192)
Q Consensus 43 EPv~~v~I~vp~~~~g~V~~~l~~rrg~i~~~~~~~-~~~~i~~~vP~~~~-~~~~~~L~s~T~G~g~~~~~~~~y~~~ 119 (192)
||++.++|.+|+++.|+|+++|++|||.+.++...+ +...|++.+|++++ .+|..+|+++|+|+|.+++.|++|++.
T Consensus 1 EPi~~v~i~vP~e~~G~V~~~l~~rrG~i~~~~~~~~~~~~i~~~~P~~~~~~g~~~~L~s~T~G~g~~~~~f~~y~~~ 79 (80)
T cd03709 1 EPFVKATIITPSEYLGAIMELCQERRGVQKDMEYLDANRVMLTYELPLAEIVYDFFDKLKSISKGYASLDYELIGYRES 79 (80)
T ss_pred CCEEEEEEEeCHHhhHHHHHHHHHhCCEEeccEecCCCeEEEEEECCHHHHhhhHHHHhHhhcCCEEEEEEEecccccC
Confidence 899999999999999999999999999999998765 48899999999999 599999999999999999999999864
No 27
>cd01514 Elongation_Factor_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of elongation factors (EFs) bacterial EF-G, eukaryotic and archeal EF-2 and eukaryotic mitochondrial mtEFG1s and mtEFG2s. This group also includes proteins similar to the ribosomal protection proteins Tet(M) and Tet(O), BipA, LepA and, spliceosomal proteins: human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and yeast counterpart Snu114p. This domain adopts a ferredoxin-like fold consisting of an alpha-beta sandwich with anti-parallel beta-sheets, resembling the topology of domain III found in the elongation factors EF-G and eukaryotic EF-2, with which it forms the C-terminal block. The two domains however are not superimposable and domain III lacks some of the characteristics of this domain. EF-2/EF-G in complex with GTP, promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the
Probab=99.71 E-value=2.5e-17 Score=112.64 Aligned_cols=78 Identities=44% Similarity=0.780 Sum_probs=74.7
Q ss_pred eeeEEEEEEecCCchhhHHHHHhhcCceeeeeeecC-CeEEEEEeecchhhcchhhhhhhhccceEEeeeeecceeecC
Q psy11837 43 EPYMYLEIISDEQYVHGILADLSRRRADIRSVEDRG-SSKVIIAEAPLSELLGYCQRVRTLSSGRSHFSMEFLCFKQVS 120 (192)
Q Consensus 43 EPv~~v~I~vp~~~~g~V~~~l~~rrg~i~~~~~~~-~~~~i~~~vP~~~~~~~~~~L~s~T~G~g~~~~~~~~y~~~p 120 (192)
||++.++|.+|+++.|.|+++|++|||.+.+....+ +...|++.+|++++++|..+|++.|+|+|.+++.|+||++++
T Consensus 1 EPi~~~~I~~p~~~~g~v~~~l~~rrg~v~~~~~~~~~~~~i~~~iP~~e~~g~~~~lr~~T~G~~~~~~~f~~y~~~~ 79 (79)
T cd01514 1 EPIMKVEITVPEEYLGAVIGDLSKRRGEILGMEPRGTGRVVIKAELPLAEMFGFATDLRSLTQGRASFSMEFSHYEPVP 79 (79)
T ss_pred CCEEEEEEEcCHHHHHHHHHHHHhcCCeeEeeEecCCCeEEEEEECCHHHHcCcHHHhhhhcCCeEEEEEEecceEeCc
Confidence 899999999999999999999999999999988776 789999999999999999999999999999999999999874
No 28
>cd04098 eEF2_C_snRNP eEF2_C_snRNP: This family includes a C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to the C-terminal domain of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.69 E-value=3.3e-17 Score=112.50 Aligned_cols=78 Identities=17% Similarity=0.195 Sum_probs=64.2
Q ss_pred CeEEEEEeecchhhcchhhhhhhhccceEEeeeeecceeecCchHHHHHHhcccCCC-cceeccCchhhhhhhhhhhhhh
Q psy11837 79 SSKVIIAEAPLSELLGYCQRVRTLSSGRSHFSMEFLCFKQVSSQNEAQAVRNITGFD-PVIIAEAPLSELLGYCQRVRTL 157 (192)
Q Consensus 79 ~~~~i~~~vP~~~~~~~~~~L~s~T~G~g~~~~~~~~y~~~p~~~~~~i~~~~~~~~-~~i~a~~P~~~~~~y~~~lrs~ 157 (192)
|++.+++.+|.+.++++..+|.. .+|.+.- .+ ...+.+ ..|+|++|++++++|.++|||+
T Consensus 2 Pi~~~ei~~p~~~~g~v~~~L~~---rrg~i~~----~~------------~~~~~~~~~i~a~vP~~e~~~~~~~Lrs~ 62 (80)
T cd04098 2 PIYEVEITCPADAVSAVYEVLSR---RRGHVIY----DT------------PIPGTPLYEVKAFIPVIESFGFETDLRVH 62 (80)
T ss_pred CEEEEEEEECHHHHhHHHHHHhh---CCcEEee----ee------------ccCCCCcEEEEEECCHHHHhChHHHHHhh
Confidence 68999999999999999999965 4555311 00 011222 7899999999999999999999
Q ss_pred ccCceeEEEEecccccCC
Q psy11837 158 SSGRSHFSMEFLCFKQVS 175 (192)
Q Consensus 158 T~G~g~~~~~~~~y~~v~ 175 (192)
|+|+|.|+|+|+||++||
T Consensus 63 T~G~~~~~~~f~~y~~v~ 80 (80)
T cd04098 63 TQGQAFCQSVFDHWQIVP 80 (80)
T ss_pred CCCceEEEEEeCeeeECc
Confidence 999999999999999996
No 29
>cd04096 eEF2_snRNP_like_C eEF2_snRNP_like_C: this family represents a C-terminal domain of eukaryotic elongation factor 2 (eEF-2) and a homologous domain of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.59 E-value=1.6e-15 Score=103.92 Aligned_cols=79 Identities=18% Similarity=0.152 Sum_probs=64.4
Q ss_pred CeEEEEEeecchhhcchhhhhhhhccceEEeeeeecceeecCchHHHHHHhcccCCCcceeccCchhhhhhhhhhhhhhc
Q psy11837 79 SSKVIIAEAPLSELLGYCQRVRTLSSGRSHFSMEFLCFKQVSSQNEAQAVRNITGFDPVIIAEAPLSELLGYCQRVRTLS 158 (192)
Q Consensus 79 ~~~~i~~~vP~~~~~~~~~~L~s~T~G~g~~~~~~~~y~~~p~~~~~~i~~~~~~~~~~i~a~~P~~~~~~y~~~lrs~T 158 (192)
|++.+++.+|.+.++++..+|.+ .+|.+.- .+. ...+....|.|.+|+++|++|.++||++|
T Consensus 2 Pi~~~~I~~p~~~~g~V~~~l~~---rrg~i~~----~~~-----------~~~~~~~~i~~~iP~~e~~~~~~~Lrs~T 63 (80)
T cd04096 2 PIYLVEIQCPEDALGKVYSVLSK---RRGHVLS----EEP-----------KEGTPLFEIKAYLPVIESFGFETDLRSAT 63 (80)
T ss_pred CEEEEEEEEcHHHhhHHHHhhhh---CeeEEeE----Eee-----------cCCCccEEEEEEEeHHHHhCcHHHHHhhC
Confidence 68999999999999999999954 4665321 010 00122378999999999999999999999
Q ss_pred cCceeEEEEecccccCC
Q psy11837 159 SGRSHFSMEFLCFKQVS 175 (192)
Q Consensus 159 ~G~g~~~~~~~~y~~v~ 175 (192)
+|+|+|+++|+||++||
T Consensus 64 ~G~~~~~~~f~~y~~~~ 80 (80)
T cd04096 64 SGQAFPQLVFSHWEIVP 80 (80)
T ss_pred CCCcEEEEEeceeEECc
Confidence 99999999999999996
No 30
>smart00838 EFG_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of Elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopt a ferredoxin-like fold.
Probab=99.58 E-value=1.7e-15 Score=105.06 Aligned_cols=81 Identities=25% Similarity=0.389 Sum_probs=67.0
Q ss_pred CCeEEEEEeecchhhcchhhhhhhhccceEEeeeeecceeecCchHHHHHHhcccCCCcceeccCchhhhhhhhhhhhhh
Q psy11837 78 GSSKVIIAEAPLSELLGYCQRVRTLSSGRSHFSMEFLCFKQVSSQNEAQAVRNITGFDPVIIAEAPLSELLGYCQRVRTL 157 (192)
Q Consensus 78 ~~~~~i~~~vP~~~~~~~~~~L~s~T~G~g~~~~~~~~y~~~p~~~~~~i~~~~~~~~~~i~a~~P~~~~~~y~~~lrs~ 157 (192)
.|++.+++.+|.+.++.+..+|.. .+|.+. .. +..+....|+|.+|++++++|.++||++
T Consensus 3 EPi~~~~I~~p~~~~g~v~~~l~~---rrG~i~----~~-------------~~~~~~~~i~~~iP~~~~~~~~~~Lrs~ 62 (85)
T smart00838 3 EPIMKVEVTVPEEYMGDVIGDLNS---RRGKIE----GM-------------EQRGGAQVIKAKVPLSEMFGYATDLRSA 62 (85)
T ss_pred CCEEEEEEEeCHHHHHHHHHHHHH---cCCEEE----Ce-------------eccCCcEEEEEECCHHHHhchHHHHHHh
Confidence 468999999999999999999955 455531 11 1113357899999999999999999999
Q ss_pred ccCceeEEEEecccccCCcHH
Q psy11837 158 SSGRSHFSMEFLCFKQVSSQN 178 (192)
Q Consensus 158 T~G~g~~~~~~~~y~~v~~~~ 178 (192)
|+|+|+|+++|+||++||.+.
T Consensus 63 T~G~~~~~~~f~~y~~~~~~~ 83 (85)
T smart00838 63 TQGRATWSMEFSHYEEVPKSI 83 (85)
T ss_pred cCCeEEEEEEeCcceECChhh
Confidence 999999999999999999754
No 31
>cd04097 mtEFG1_C mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals (desig
Probab=99.58 E-value=1.7e-15 Score=103.44 Aligned_cols=77 Identities=21% Similarity=0.324 Sum_probs=64.3
Q ss_pred CeEEEEEeecchhhcchhhhhhhhccceEEeeeeecceeecCchHHHHHHhcccCCCcceeccCchhhhhhhhhhhhhhc
Q psy11837 79 SSKVIIAEAPLSELLGYCQRVRTLSSGRSHFSMEFLCFKQVSSQNEAQAVRNITGFDPVIIAEAPLSELLGYCQRVRTLS 158 (192)
Q Consensus 79 ~~~~i~~~vP~~~~~~~~~~L~s~T~G~g~~~~~~~~y~~~p~~~~~~i~~~~~~~~~~i~a~~P~~~~~~y~~~lrs~T 158 (192)
|++.+++.+|.+.++++..+|.. .+|.+.- . +..++...|.|.+|++++++|.++||++|
T Consensus 2 Pi~~~~I~~p~~~~g~v~~~l~~---rrg~i~~----~-------------~~~~~~~~i~~~~P~~e~~g~~~~Lr~~T 61 (78)
T cd04097 2 PIMKVEVTAPTEFQGNVIGLLNK---RKGTIVD----T-------------DTGEDEFTLEAEVPLNDMFGYSTELRSMT 61 (78)
T ss_pred CEEEEEEEecHHHHHHHHHHHHH---CCCEEec----e-------------EecCCeEEEEEEECHHHhhChHHHHHhhC
Confidence 68899999999999999999965 3554311 0 11124578999999999999999999999
Q ss_pred cCceeEEEEecccccCC
Q psy11837 159 SGRSHFSMEFLCFKQVS 175 (192)
Q Consensus 159 ~G~g~~~~~~~~y~~v~ 175 (192)
+|+|.|+++|+||++||
T Consensus 62 ~G~~~~~~~f~~y~~~~ 78 (78)
T cd04097 62 QGKGEFSMEFSRYAPVP 78 (78)
T ss_pred CCcEEEEEEecceEECc
Confidence 99999999999999997
No 32
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.56 E-value=3e-15 Score=136.82 Aligned_cols=112 Identities=24% Similarity=0.435 Sum_probs=99.6
Q ss_pred eeeeeeEEEEEEecCCchhhHHHHHhhcCceeeeeeecCCeEEEEEeecchhh-cchhhhhhhhccceEEeeeeecceee
Q psy11837 40 ILLEPYMYLEIISDEQYVHGILADLSRRRADIRSVEDRGSSKVIIAEAPLSEL-LGYCQRVRTLSSGRSHFSMEFLCFKQ 118 (192)
Q Consensus 40 ~l~EPv~~v~I~vp~~~~g~V~~~l~~rrg~i~~~~~~~~~~~i~~~vP~~~~-~~~~~~L~s~T~G~g~~~~~~~~y~~ 118 (192)
.++||+++++|.+|++|.|+|+++|+.|||.+.+++..+++..|++.+|++++ .+|..+|+++|+|+|+|+++|++|++
T Consensus 401 ~llEP~~~~~i~~P~~~~G~vm~~~~~rRG~~~~~~~~~~~~~i~~~~Pl~e~~~~~~~~Lks~T~G~gs~~~~~~~Y~~ 480 (600)
T PRK05433 401 EIEEPIVKATIIVPQEYVGAVMELCQEKRGVQKDMEYLGNRVELTYELPLAEIVFDFFDRLKSVSRGYASLDYEFIGYRE 480 (600)
T ss_pred eEECCEEEEEEEecHHHHHHHHHHHHHcCCEEeCcEecCCeEEEEEEechHHhhhhHHHHhHhhcCCEEEEEEEECCccc
Confidence 79999999999999999999999999999999999987678999999999999 99999999999999999999999986
Q ss_pred cCchHHHHHHhcccCCCcceeccCchhhhhhhhhhhhhhccCce
Q psy11837 119 VSSQNEAQAVRNITGFDPVIIAEAPLSELLGYCQRVRTLSSGRS 162 (192)
Q Consensus 119 ~p~~~~~~i~~~~~~~~~~i~a~~P~~~~~~y~~~lrs~T~G~g 162 (192)
.. +. .-+..|+++ |+..+....++.++...||.
T Consensus 481 ~~------~~----~~~~~~n~~-~~~~l~~~~~~~~~~~~~~~ 513 (600)
T PRK05433 481 SD------LV----KLDILINGE-PVDALSFIVHRDKAYERGRA 513 (600)
T ss_pred cc------EE----EEEEEECCc-ccceeEEeeeHHHHHHHHHH
Confidence 54 22 235667777 78888888888888888876
No 33
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.55 E-value=1.3e-14 Score=132.45 Aligned_cols=118 Identities=17% Similarity=0.192 Sum_probs=95.6
Q ss_pred eeeeeeEEEEEEecCCchhhHHHHHhhcCceeeeeeec-CCeEEEEEeecchhhcchhhhhhhhccceEEeeeeecceee
Q psy11837 40 ILLEPYMYLEIISDEQYVHGILADLSRRRADIRSVEDR-GSSKVIIAEAPLSELLGYCQRVRTLSSGRSHFSMEFLCFKQ 118 (192)
Q Consensus 40 ~l~EPv~~v~I~vp~~~~g~V~~~l~~rrg~i~~~~~~-~~~~~i~~~vP~~~~~~~~~~L~s~T~G~g~~~~~~~~y~~ 118 (192)
.++||++.++|.+|+++.|.|+++|+.|||.+.+++.. +++..|++.+|.+++.+|..+|++.|+|+|.|++.|++|++
T Consensus 391 ~llEPi~~~~i~vp~e~~G~v~~~l~~RrG~~~~~~~~~~~~~~i~~~vP~~~l~~y~~~l~s~T~G~g~~~~~f~~Y~~ 470 (594)
T TIGR01394 391 KKLEPIEELTIDVPEEHVGAVIEKLGKRKGEMVDMEPSGNGRTRLEFKIPSRGLIGFRTEFLTDTRGTGIMNHVFDEYEP 470 (594)
T ss_pred eEECCEEEEEEEechHHHHHHHHHHHHhCCEEeccEECCCCEEEEEEEeChHHhhhHHHHHHhhcCCeEEEEEEecccee
Confidence 78999999999999999999999999999999999985 45899999999999999999999999999999999999999
Q ss_pred cCchHHHHHHhcccCCCcceeccCchhhhhhhhhhhhhhccCceeEEEEe
Q psy11837 119 VSSQNEAQAVRNITGFDPVIIAEAPLSELLGYCQRVRTLSSGRSHFSMEF 168 (192)
Q Consensus 119 ~p~~~~~~i~~~~~~~~~~i~a~~P~~~~~~y~~~lrs~T~G~g~~~~~~ 168 (192)
+|++.... .....|..+ -.+...|+-. --|-||.|...+
T Consensus 471 ~~~~i~~~------~~g~~~~~~--~g~~~~~~~~---~~~~rg~~f~~~ 509 (594)
T TIGR01394 471 WKGEIETR------RNGSLVSME--DGTATAYALW---NLQERGVMFVSP 509 (594)
T ss_pred CCCcCCCC------CceeEEECC--CCcChHhhhh---chhhcccEEeCC
Confidence 99875321 222334333 1333445544 456677775543
No 34
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.54 E-value=4.8e-15 Score=135.42 Aligned_cols=114 Identities=25% Similarity=0.402 Sum_probs=100.0
Q ss_pred CceeeeeeEEEEEEecCCchhhHHHHHhhcCceeeeeeecC-CeEEEEEeecchhh-cchhhhhhhhccceEEeeeeecc
Q psy11837 38 GCILLEPYMYLEIISDEQYVHGILADLSRRRADIRSVEDRG-SSKVIIAEAPLSEL-LGYCQRVRTLSSGRSHFSMEFLC 115 (192)
Q Consensus 38 g~~l~EPv~~v~I~vp~~~~g~V~~~l~~rrg~i~~~~~~~-~~~~i~~~vP~~~~-~~~~~~L~s~T~G~g~~~~~~~~ 115 (192)
-+.++||+++++|.+|++|.|+|+++|+.|||.+.+++..+ +...|++.+|++++ .+|..+|+++|+|+|+|+++|++
T Consensus 395 ~~~llEP~~~~~i~~P~~~~G~vm~~~~~rRG~~~~~~~~~~~~~~i~~~~Plae~~~~~~~~Lks~T~G~gs~~~~~~~ 474 (595)
T TIGR01393 395 IEHVEEPYVKATIITPTEYLGPIMTLCQEKRGVQTNMEYLDPNRVELIYEMPLAEIVYDFFDKLKSISRGYASFDYELIG 474 (595)
T ss_pred ccceeCCeEEEEEEccHHHHHHHHHHHHHcCCEEeCcEEcCCCeEEEEEEeccchhhhchhHHhhhhcCCEEEEEEEECC
Confidence 36799999999999999999999999999999999999854 58899999999997 99999999999999999999999
Q ss_pred eeecCchHHHHHHhcccCCCcceeccCchhhhhhhhhhhhhhccCce
Q psy11837 116 FKQVSSQNEAQAVRNITGFDPVIIAEAPLSELLGYCQRVRTLSSGRS 162 (192)
Q Consensus 116 y~~~p~~~~~~i~~~~~~~~~~i~a~~P~~~~~~y~~~lrs~T~G~g 162 (192)
|++.. +. ..+..|+++ |+..+....++.++...||.
T Consensus 475 Y~~~~------~~----~~~~~~n~~-~~d~l~~~~~~~~~~~~~~~ 510 (595)
T TIGR01393 475 YRPSD------LV----KLDILINGE-PVDALSFIVHRDKAYSRGRE 510 (595)
T ss_pred ccccc------eE----EEEEEECCc-ccceeEEeeeHHHHHHHHHH
Confidence 98653 22 335667777 78888888888888888876
No 35
>PF00679 EFG_C: Elongation factor G C-terminus; InterPro: IPR000640 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF2 (EF-G) is a G-protein. It brings about the translocation of peptidyl-tRNA and mRNA through a ratchet-like mechanism: the binding of GTP-EF2 to the ribosome causes a counter-clockwise rotation in the small ribosomal subunit; the hydrolysis of GTP to GDP by EF2 and the subsequent release of EF2 causes a clockwise rotation of the small subunit back to the starting position [, ]. This twisting action destabilises tRNA-ribosome interactions, freeing the tRNA to translocate along the ribosome upon GTP-hydrolysis by EF2. EF2 binding also affects the entry and exit channel openings for the mRNA, widening it when bound to enable the mRNA to translocate along the ribosome. This entry represents the C-terminal domain found in EF2 (or EF-G) of both prokaryotes and eukaryotes (also known as eEF2), as well as in some tetracycline-resistance proteins. This domain adopts a ferredoxin-like fold consisting of an alpha/beta sandwich with anti-parallel beta-sheets. It resembles the topology of domain III found in these elongation factors, with which it forms the C-terminal block, but these two domains cannot be superimposed []. This domain is often found associated with (IPR000795 from INTERPRO), which contains the signatures for the N terminus of the proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 1WDT_A 2DY1_A 3CB4_F 3DEG_C 2EFG_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y ....
Probab=99.54 E-value=7.2e-15 Score=102.80 Aligned_cols=85 Identities=28% Similarity=0.364 Sum_probs=69.7
Q ss_pred CeEEEEEeecchhhcchhhhhhhhccceEEeeeeecceeecCchHHHHHHhcccCCCcceeccCchhhhhhhhhhhhhhc
Q psy11837 79 SSKVIIAEAPLSELLGYCQRVRTLSSGRSHFSMEFLCFKQVSSQNEAQAVRNITGFDPVIIAEAPLSELLGYCQRVRTLS 158 (192)
Q Consensus 79 ~~~~i~~~vP~~~~~~~~~~L~s~T~G~g~~~~~~~~y~~~p~~~~~~i~~~~~~~~~~i~a~~P~~~~~~y~~~lrs~T 158 (192)
|++.+++.+|.+.++.+..+|.. .+|.+... . ...++...|.|.+|++++++|.++||++|
T Consensus 5 P~~~~~I~~p~~~~g~v~~~l~~---r~g~i~~~----~------------~~~~~~~~i~~~iP~~~~~gf~~~Lr~~T 65 (89)
T PF00679_consen 5 PIMSVEISVPEEYLGKVISDLSK---RRGEILSM----D------------PIGGDRVVIEAEIPVRELFGFRSELRSLT 65 (89)
T ss_dssp EEEEEEEEEEGGGHHHHHHHHHH---TT-EEEEE----E------------EESTTEEEEEEEEEGGGHTTHHHHHHHHT
T ss_pred CEEEEEEEECHHHHHHHHHHhcc---cccEEEec----h------------hhhhhheeEEEEEChhhhhhHHHHhhccC
Confidence 58899999999999999999976 34442110 0 11246789999999999999999999999
Q ss_pred cCceeEEEEecccccCCcHHHHHH
Q psy11837 159 SGRSHFSMEFLCFKQVSSQNEAQA 182 (192)
Q Consensus 159 ~G~g~~~~~~~~y~~v~~~~~~~~ 182 (192)
+|+|.|+++|+||++++.+.++++
T Consensus 66 ~G~a~~~~~~~~y~~~~~~~~~~~ 89 (89)
T PF00679_consen 66 SGRASFSMEFSGYRPVPGDILDRL 89 (89)
T ss_dssp TTS-EEEEEEEEEEEESHHHHHHH
T ss_pred CCEEEEEEEECeeEECCCChhhcC
Confidence 999999999999999999988875
No 36
>cd03711 Tet_C Tet_C: C-terminus of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to the C terminal domains of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=99.54 E-value=7.9e-15 Score=100.10 Aligned_cols=77 Identities=14% Similarity=0.174 Sum_probs=64.4
Q ss_pred CeEEEEEeecchhhcchhhhhhhhccceEEeeeeecceeecCchHHHHHHhcccCCCcceeccCchhhhhhhhhhhhhhc
Q psy11837 79 SSKVIIAEAPLSELLGYCQRVRTLSSGRSHFSMEFLCFKQVSSQNEAQAVRNITGFDPVIIAEAPLSELLGYCQRVRTLS 158 (192)
Q Consensus 79 ~~~~i~~~vP~~~~~~~~~~L~s~T~G~g~~~~~~~~y~~~p~~~~~~i~~~~~~~~~~i~a~~P~~~~~~y~~~lrs~T 158 (192)
|++.+++.+|.+.++++..+|.. .+|.+. +. +..++...|+|.+|++++++|.++||++|
T Consensus 2 Pi~~~~i~~p~~~~g~v~~~l~~---rrg~i~----~~-------------~~~~~~~~i~~~~P~~~~~g~~~~Lr~~T 61 (78)
T cd03711 2 PYLRFELEVPQDALGRAMSDLAK---MGATFE----DP-------------QIKGDEVTLEGTIPVATSQDYQSELPSYT 61 (78)
T ss_pred CeEEEEEEcCHHHHHHHHHHHHH---cCCEee----Cc-------------EecCCEEEEEEEECHHHHhhHHHHhHhhc
Confidence 68899999999999999999965 355532 11 11134688999999999999999999999
Q ss_pred cCceeEEEEecccccCC
Q psy11837 159 SGRSHFSMEFLCFKQVS 175 (192)
Q Consensus 159 ~G~g~~~~~~~~y~~v~ 175 (192)
+|+|+|+++|+||++|+
T Consensus 62 ~G~~~~~~~f~~y~~~~ 78 (78)
T cd03711 62 HGEGVLETEFKGYRPCH 78 (78)
T ss_pred CCeEEEEEEeCCeEECC
Confidence 99999999999999985
No 37
>KOG0469|consensus
Probab=99.53 E-value=7.9e-15 Score=128.70 Aligned_cols=105 Identities=26% Similarity=0.295 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHHHHHcCceeeeeeEEEEEEecCCchhhHHHHHhhcCceeeeeeec--CCeEEEEEeecchhhcchhh
Q psy11837 20 YVILMCIATGASMALKEAGCILLEPYMYLEIISDEQYVHGILADLSRRRADIRSVEDR--GSSKVIIAEAPLSELLGYCQ 97 (192)
Q Consensus 20 ~~~~~a~~~~~~~al~~ag~~l~EPv~~v~I~vp~~~~g~V~~~l~~rrg~i~~~~~~--~~~~~i~~~vP~~~~~~~~~ 97 (192)
.|+++.+++++.+++..|+|++.||++.|+|++|+.+.|.+...|.++||.+.+.++. .+...|++++|+.+.++|..
T Consensus 703 gQiipt~rr~~ya~~l~A~P~l~EPvylvEIq~pe~avGgiy~vLn~kRG~v~~e~q~~Gtp~f~vkayLPVnESFgFt~ 782 (842)
T KOG0469|consen 703 GQIIPTARRVLYASVLTAGPILQEPVYLVEIQCPEQAVGGIYGVLNRKRGHVFEEEQVPGTPMFVVKAYLPVNESFGFTA 782 (842)
T ss_pred CeechHHHHHHHHHHHhcCceecCceEEEEEeCchhhhchhhheeeccccceecccccCCCcceEEEEEeecccccccch
Confidence 5799999999999999999999999999999999999999999999999999887764 57899999999999999999
Q ss_pred hhhhhccceEEeeeeecceeecCchHH
Q psy11837 98 RVRTLSSGRSHFSMEFLCFKQVSSQNE 124 (192)
Q Consensus 98 ~L~s~T~G~g~~~~~~~~y~~~p~~~~ 124 (192)
|||+.|+|++.-++.|+||+.+|+|+.
T Consensus 783 dLrs~t~GqAfpq~vFdHws~lpgdp~ 809 (842)
T KOG0469|consen 783 DLRSNTGGQAFPQMVFDHWSILPGDPL 809 (842)
T ss_pred hhhcccCCccccceeeeccccCCCCCC
Confidence 999999999999999999999998864
No 38
>cd03713 EFG_mtEFG_C EFG_mtEFG_C: domains similar to the C-terminal domain of the bacterial translational elongation factor (EF) EF-G. Included in this group is the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2) proteins. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide
Probab=99.52 E-value=1.1e-14 Score=99.20 Aligned_cols=77 Identities=27% Similarity=0.411 Sum_probs=64.2
Q ss_pred CeEEEEEeecchhhcchhhhhhhhccceEEeeeeecceeecCchHHHHHHhcccCCCcceeccCchhhhhhhhhhhhhhc
Q psy11837 79 SSKVIIAEAPLSELLGYCQRVRTLSSGRSHFSMEFLCFKQVSSQNEAQAVRNITGFDPVIIAEAPLSELLGYCQRVRTLS 158 (192)
Q Consensus 79 ~~~~i~~~vP~~~~~~~~~~L~s~T~G~g~~~~~~~~y~~~p~~~~~~i~~~~~~~~~~i~a~~P~~~~~~y~~~lrs~T 158 (192)
|++.+++.+|.+.++.+..+|.. .+|.+. .. +..++...|+|.+|++++++|.++||++|
T Consensus 2 Pi~~~~I~~p~~~~g~v~~~l~~---rrg~i~----~~-------------~~~~~~~~i~~~iP~~e~~~~~~~Lr~~T 61 (78)
T cd03713 2 PIMKVEVTVPEEYMGDVIGDLSS---RRGQIL----GT-------------ESRGGWKVIKAEVPLAEMFGYSTDLRSLT 61 (78)
T ss_pred CEEEEEEEcCHHHHHHHHHHHHH---cCCceE----ce-------------eccCCcEEEEEEcCHHHHhChHHHHHhhc
Confidence 68899999999999999999965 344421 00 01134678999999999999999999999
Q ss_pred cCceeEEEEecccccCC
Q psy11837 159 SGRSHFSMEFLCFKQVS 175 (192)
Q Consensus 159 ~G~g~~~~~~~~y~~v~ 175 (192)
+|+|.|+++|+||++||
T Consensus 62 ~G~a~~~~~f~~y~~~~ 78 (78)
T cd03713 62 QGRGSFTMEFSHYEEVP 78 (78)
T ss_pred CCeEEEEEEecceeECc
Confidence 99999999999999996
No 39
>cd03710 BipA_TypA_C BipA_TypA_C: a C-terminal portion of BipA or TypA having homology to the C terminal domains of the elongation factors EF-G and EF-2. A member of the ribosome binding GTPase superfamily, BipA is widely distributed in bacteria and plants. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secreti
Probab=99.51 E-value=1.3e-14 Score=99.26 Aligned_cols=77 Identities=9% Similarity=0.083 Sum_probs=63.7
Q ss_pred CeEEEEEeecchhhcchhhhhhhhccceEEeeeeecceeecCchHHHHHHhcccCCCcceeccCchhhhhhhhhhhhhhc
Q psy11837 79 SSKVIIAEAPLSELLGYCQRVRTLSSGRSHFSMEFLCFKQVSSQNEAQAVRNITGFDPVIIAEAPLSELLGYCQRVRTLS 158 (192)
Q Consensus 79 ~~~~i~~~vP~~~~~~~~~~L~s~T~G~g~~~~~~~~y~~~p~~~~~~i~~~~~~~~~~i~a~~P~~~~~~y~~~lrs~T 158 (192)
|++.+++.+|.+.++++..+|.+ .+|.+. +.+ ...+....++|++|+++|++|.++||++|
T Consensus 2 Pi~~v~I~~P~~~~g~V~~~l~~---rrg~i~----~~~------------~~~~~~~~i~~~~P~~~~~~~~~~Lrs~T 62 (79)
T cd03710 2 PIEELTIDVPEEYSGAVIEKLGK---RKGEMV----DME------------PDGNGRTRLEFKIPSRGLIGFRSEFLTDT 62 (79)
T ss_pred CEEEEEEEeCchhhHHHHHHHHh---CCCEEE----ccE------------ECCCCEEEEEEEECHHHHcCcHHHHHhhC
Confidence 68899999999999999999966 455532 111 11124578999999999999999999999
Q ss_pred cCceeEEEEecccccC
Q psy11837 159 SGRSHFSMEFLCFKQV 174 (192)
Q Consensus 159 ~G~g~~~~~~~~y~~v 174 (192)
+|+|+|+++|+||++.
T Consensus 63 ~G~a~~~~~f~~y~~~ 78 (79)
T cd03710 63 RGTGIMNHVFDGYEPY 78 (79)
T ss_pred CCeEEEEEEecccEec
Confidence 9999999999999985
No 40
>cd03709 lepA_C lepA_C: This family represents the C-terminal region of LepA, a GTP-binding protein localized in the cytoplasmic membrane. LepA is ubiquitous in Bacteria and Eukaryota (e.g. Saccharomyces cerevisiae GUF1p), but is missing from Archaea. LepA exhibits significant homology to elongation factors (EFs) Tu and G. The function(s) of the proteins in this family are unknown. The N-terminal domain of LepA is homologous to a domain of similar size found in initiation factor 2 (IF2), and in EF-Tu and EF-G (factors required for translation in Escherichia coli). Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including S. cerevisiae GUF1) originated within the bacterial LepA family. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=99.50 E-value=4.3e-14 Score=96.98 Aligned_cols=77 Identities=13% Similarity=0.232 Sum_probs=63.2
Q ss_pred CeEEEEEeecchhhcchhhhhhhhccceEEeeeeecceeecCchHHHHHHhcccCCCcceeccCchhhh-hhhhhhhhhh
Q psy11837 79 SSKVIIAEAPLSELLGYCQRVRTLSSGRSHFSMEFLCFKQVSSQNEAQAVRNITGFDPVIIAEAPLSEL-LGYCQRVRTL 157 (192)
Q Consensus 79 ~~~~i~~~vP~~~~~~~~~~L~s~T~G~g~~~~~~~~y~~~p~~~~~~i~~~~~~~~~~i~a~~P~~~~-~~y~~~lrs~ 157 (192)
|++.+++.+|.+.++++.++|.+ .+|.+. +.+ ...++...+.+.+|+++| ++|.++|||+
T Consensus 2 Pi~~v~i~vP~e~~G~V~~~l~~---rrG~i~----~~~------------~~~~~~~~i~~~~P~~~~~~g~~~~L~s~ 62 (80)
T cd03709 2 PFVKATIITPSEYLGAIMELCQE---RRGVQK----DME------------YLDANRVMLTYELPLAEIVYDFFDKLKSI 62 (80)
T ss_pred CEEEEEEEeCHHhhHHHHHHHHH---hCCEEe----ccE------------ecCCCeEEEEEECCHHHHhhhHHHHhHhh
Confidence 68899999999999999999976 355431 111 111236789999999999 6999999999
Q ss_pred ccCceeEEEEecccccC
Q psy11837 158 SSGRSHFSMEFLCFKQV 174 (192)
Q Consensus 158 T~G~g~~~~~~~~y~~v 174 (192)
|+|+|.|+++|++|+|.
T Consensus 63 T~G~g~~~~~f~~y~~~ 79 (80)
T cd03709 63 SKGYASLDYELIGYRES 79 (80)
T ss_pred cCCEEEEEEEecccccC
Confidence 99999999999999985
No 41
>PRK10218 GTP-binding protein; Provisional
Probab=99.50 E-value=5.8e-14 Score=128.33 Aligned_cols=118 Identities=15% Similarity=0.215 Sum_probs=94.9
Q ss_pred eeeeeeEEEEEEecCCchhhHHHHHhhcCceeeeeeec-CCeEEEEEeecchhhcchhhhhhhhccceEEeeeeecceee
Q psy11837 40 ILLEPYMYLEIISDEQYVHGILADLSRRRADIRSVEDR-GSSKVIIAEAPLSELLGYCQRVRTLSSGRSHFSMEFLCFKQ 118 (192)
Q Consensus 40 ~l~EPv~~v~I~vp~~~~g~V~~~l~~rrg~i~~~~~~-~~~~~i~~~vP~~~~~~~~~~L~s~T~G~g~~~~~~~~y~~ 118 (192)
..+||++.++|.+|+++.|.|+++|+.|||.+.+++.. +++..|++.+|.+++.+|..+|++.|+|+|.|++.|++|++
T Consensus 395 ~klEPi~~v~i~vP~e~~G~V~~~l~~RrG~~~~m~~~~~~~~~l~~~vP~~~l~~y~~~l~s~T~G~g~~~~~f~~Y~~ 474 (607)
T PRK10218 395 RKQEPYENVTLDVEEQHQGSVMQALGERKGDLKNMNPDGKGRVRLDYVIPSRGLIGFRSEFMTMTSGTGLLYSTFSHYDD 474 (607)
T ss_pred EEeCCeEEEEEEechhhHHHHHHHHHhcCCEEeccEECCCCEEEEEEEcCHHHHhhHHHHhhhhCCCeEEEEEEecCccC
Confidence 36899999999999999999999999999999999985 56899999999999999999999999999999999999999
Q ss_pred cC-chHHHHHHhcccCCCcceeccCchhhhhhhhhhhhhhccCceeEEEEe
Q psy11837 119 VS-SQNEAQAVRNITGFDPVIIAEAPLSELLGYCQRVRTLSSGRSHFSMEF 168 (192)
Q Consensus 119 ~p-~~~~~~i~~~~~~~~~~i~a~~P~~~~~~y~~~lrs~T~G~g~~~~~~ 168 (192)
+| ++... + .....|..+ ..+...|+-. --|-||.|...+
T Consensus 475 ~~~g~~~~-----~-~~g~~~~~~--~g~~~~~~l~---~~~~rg~~f~~~ 514 (607)
T PRK10218 475 VRPGEVGQ-----R-QNGVLISNG--QGKAVAFALF---GLQDRGKLFLGH 514 (607)
T ss_pred CCCCCCCC-----c-cceEEEECC--CCcCHHHhhh---hhhhccceeecC
Confidence 99 55421 1 123444433 2334455544 556788776543
No 42
>cd01514 Elongation_Factor_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of elongation factors (EFs) bacterial EF-G, eukaryotic and archeal EF-2 and eukaryotic mitochondrial mtEFG1s and mtEFG2s. This group also includes proteins similar to the ribosomal protection proteins Tet(M) and Tet(O), BipA, LepA and, spliceosomal proteins: human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and yeast counterpart Snu114p. This domain adopts a ferredoxin-like fold consisting of an alpha-beta sandwich with anti-parallel beta-sheets, resembling the topology of domain III found in the elongation factors EF-G and eukaryotic EF-2, with which it forms the C-terminal block. The two domains however are not superimposable and domain III lacks some of the characteristics of this domain. EF-2/EF-G in complex with GTP, promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the
Probab=99.45 E-value=9e-14 Score=94.92 Aligned_cols=77 Identities=29% Similarity=0.409 Sum_probs=64.1
Q ss_pred CeEEEEEeecchhhcchhhhhhhhccceEEeeeeecceeecCchHHHHHHhcccC-CCcceeccCchhhhhhhhhhhhhh
Q psy11837 79 SSKVIIAEAPLSELLGYCQRVRTLSSGRSHFSMEFLCFKQVSSQNEAQAVRNITG-FDPVIIAEAPLSELLGYCQRVRTL 157 (192)
Q Consensus 79 ~~~~i~~~vP~~~~~~~~~~L~s~T~G~g~~~~~~~~y~~~p~~~~~~i~~~~~~-~~~~i~a~~P~~~~~~y~~~lrs~ 157 (192)
|++.+++.+|.+.++.+..+|.+ .+|.+.- . +..+ ....|.|.+|++++++|.++||++
T Consensus 2 Pi~~~~I~~p~~~~g~v~~~l~~---rrg~v~~----~-------------~~~~~~~~~i~~~iP~~e~~g~~~~lr~~ 61 (79)
T cd01514 2 PIMKVEITVPEEYLGAVIGDLSK---RRGEILG----M-------------EPRGTGRVVIKAELPLAEMFGFATDLRSL 61 (79)
T ss_pred CEEEEEEEcCHHHHHHHHHHHHh---cCCeeEe----e-------------EecCCCeEEEEEECCHHHHcCcHHHhhhh
Confidence 68899999999999999999966 3444211 0 0112 468899999999999999999999
Q ss_pred ccCceeEEEEecccccCC
Q psy11837 158 SSGRSHFSMEFLCFKQVS 175 (192)
Q Consensus 158 T~G~g~~~~~~~~y~~v~ 175 (192)
|+|+|.|+++|+||+++|
T Consensus 62 T~G~~~~~~~f~~y~~~~ 79 (79)
T cd01514 62 TQGRASFSMEFSHYEPVP 79 (79)
T ss_pred cCCeEEEEEEecceEeCc
Confidence 999999999999999986
No 43
>KOG0464|consensus
Probab=99.38 E-value=1.1e-12 Score=113.42 Aligned_cols=114 Identities=32% Similarity=0.503 Sum_probs=101.4
Q ss_pred ChHHHHHHHHHHHHHHHHHcCceeeeeeEEEEEEec-CCchhhHHHHHhhcCceeeeeeec--CCeEEEEEeecchhhcc
Q psy11837 18 RTYVILMCIATGASMALKEAGCILLEPYMYLEIISD-EQYVHGILADLSRRRADIRSVEDR--GSSKVIIAEAPLSELLG 94 (192)
Q Consensus 18 ~~~~~~~a~~~~~~~al~~ag~~l~EPv~~v~I~vp-~~~~g~V~~~l~~rrg~i~~~~~~--~~~~~i~~~vP~~~~~~ 94 (192)
.|.-+..++.+|+.+||++|...+.||+|+++|.+. ++++.+|+.+|+.|||.++.++.. +.+-.|.+.+|++++.+
T Consensus 633 n~alisac~qkcvqealkkad~~l~eplm~lei~i~~dd~~qpiladl~qrr~~~e~~~aredneirri~~~lplaei~~ 712 (753)
T KOG0464|consen 633 NPALISACAQKCVQEALKKADKQLLEPLMELEIEIANDDPLQPILADLAQRRAHFEEIDAREDNEIRRICAFLPLAEIEG 712 (753)
T ss_pred CHHHHHHHHHHHHHHHHhhhhHHHhhhhhheEEEEecCCCccHHHHHHHHhhccchhcccccccchheeeEeeeHHHhhc
Confidence 455588889999999999999999999999999996 589999999999999999887764 34667999999999999
Q ss_pred hhhhhhhhccceEEeeeeecceeecCchHHHHHHhcc
Q psy11837 95 YCQRVRTLSSGRSHFSMEFLCFKQVSSQNEAQAVRNI 131 (192)
Q Consensus 95 ~~~~L~s~T~G~g~~~~~~~~y~~~p~~~~~~i~~~~ 131 (192)
++..||.+|+|.+.|..+|.+|+.+.+..+.++++++
T Consensus 713 ~s~~lrtltsg~a~~ale~~~yqamn~~dk~~il~kr 749 (753)
T KOG0464|consen 713 LSKTLRTLTSGFADFALEFRGYQAMNEHDKMEILKKR 749 (753)
T ss_pred HHHHHHHHhcccceEEEEecchhhcChHHHHHHHHhh
Confidence 9999999999999999999999999988777777544
No 44
>KOG0468|consensus
Probab=99.26 E-value=2.4e-12 Score=116.12 Aligned_cols=107 Identities=21% Similarity=0.206 Sum_probs=98.1
Q ss_pred hHHHHHHHHHHHHHHHHHcCceeeeeeEEEEEEecCCchhhHHHHHhhcCceeeeeeec--CCeEEEEEeecchhhcchh
Q psy11837 19 TYVILMCIATGASMALKEAGCILLEPYMYLEIISDEQYVHGILADLSRRRADIRSVEDR--GSSKVIIAEAPLSELLGYC 96 (192)
Q Consensus 19 ~~~~~~a~~~~~~~al~~ag~~l~EPv~~v~I~vp~~~~g~V~~~l~~rrg~i~~~~~~--~~~~~i~~~vP~~~~~~~~ 96 (192)
..|+++.+++++..|+..|-|+++||++.|+|+.|.++...|...|++|||.+..-... .+...+++.+|+-+.+||-
T Consensus 804 ggQiIPtaRrv~YsafL~AtPrLmEP~Y~VEi~apad~v~~Vy~vl~rRRGhV~~d~p~pGSPly~v~a~iPvieSfGFE 883 (971)
T KOG0468|consen 804 GGQIIPTARRVAYSAFLMATPRLMEPVYLVEITAPADCVPAVYTVLSRRRGHVTQDIPVPGSPLYTVKAYLPVIESFGFE 883 (971)
T ss_pred CCccchHHHHHHHHHHHhhchhhcCceEEEEEecccchHHHHHHHHHhhcCceeecCCCCCCchhheeeecccccccCcc
Confidence 36799999999999999999999999999999999999999999999999987654332 5688999999999999999
Q ss_pred hhhhhhccceEEeeeeecceeecCchHHH
Q psy11837 97 QRVRTLSSGRSHFSMEFLCFKQVSSQNEA 125 (192)
Q Consensus 97 ~~L~s~T~G~g~~~~~~~~y~~~p~~~~~ 125 (192)
.|||-.|+|+|...+-|+||+.+|+|.-+
T Consensus 884 TDLR~hTqGqa~C~~vF~HW~~VPGDpLD 912 (971)
T KOG0468|consen 884 TDLRVHTQGQAFCLSVFDHWRIVPGDPLD 912 (971)
T ss_pred cceeeeccchhHHHHhhhhcccCCCCccc
Confidence 99999999999999999999999999753
No 45
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.24 E-value=5.1e-12 Score=115.56 Aligned_cols=84 Identities=10% Similarity=0.112 Sum_probs=69.8
Q ss_pred CCeEEEEEeecchhhcchhhhhhhhccceEEeeeeecceeecCchHHHHHHhcccCCCcceeccCchhhhhhhhhhhhhh
Q psy11837 78 GSSKVIIAEAPLSELLGYCQRVRTLSSGRSHFSMEFLCFKQVSSQNEAQAVRNITGFDPVIIAEAPLSELLGYCQRVRTL 157 (192)
Q Consensus 78 ~~~~~i~~~vP~~~~~~~~~~L~s~T~G~g~~~~~~~~y~~~p~~~~~~i~~~~~~~~~~i~a~~P~~~~~~y~~~lrs~ 157 (192)
.|++.+++.+|.+++++++.+|.+ .+|.+. +++ ...+++..+.+++|+++|.+|.++|||+
T Consensus 394 EPi~~~~i~vp~e~~G~v~~~l~~---RrG~~~----~~~------------~~~~~~~~i~~~vP~~~l~~y~~~l~s~ 454 (594)
T TIGR01394 394 EPIEELTIDVPEEHVGAVIEKLGK---RKGEMV----DME------------PSGNGRTRLEFKIPSRGLIGFRTEFLTD 454 (594)
T ss_pred CCEEEEEEEechHHHHHHHHHHHH---hCCEEe----ccE------------ECCCCEEEEEEEeChHHhhhHHHHHHhh
Confidence 579999999999999999999976 355421 111 1123568899999999999999999999
Q ss_pred ccCceeEEEEecccccCCcHHHH
Q psy11837 158 SSGRSHFSMEFLCFKQVSSQNEA 180 (192)
Q Consensus 158 T~G~g~~~~~~~~y~~v~~~~~~ 180 (192)
|+|+|.|+++|+||+|+|+++++
T Consensus 455 T~G~g~~~~~f~~Y~~~~~~i~~ 477 (594)
T TIGR01394 455 TRGTGIMNHVFDEYEPWKGEIET 477 (594)
T ss_pred cCCeEEEEEEeccceeCCCcCCC
Confidence 99999999999999999986544
No 46
>PRK10218 GTP-binding protein; Provisional
Probab=99.17 E-value=3.2e-11 Score=110.41 Aligned_cols=79 Identities=11% Similarity=0.095 Sum_probs=66.7
Q ss_pred CCeEEEEEeecchhhcchhhhhhhhccceEEeeeeecceeecCchHHHHHHhcccCCCcceeccCchhhhhhhhhhhhhh
Q psy11837 78 GSSKVIIAEAPLSELLGYCQRVRTLSSGRSHFSMEFLCFKQVSSQNEAQAVRNITGFDPVIIAEAPLSELLGYCQRVRTL 157 (192)
Q Consensus 78 ~~~~~i~~~vP~~~~~~~~~~L~s~T~G~g~~~~~~~~y~~~p~~~~~~i~~~~~~~~~~i~a~~P~~~~~~y~~~lrs~ 157 (192)
.|++.+++.+|.+++++++.+|.+ .+|.+. +++ ...+++..+++++|+++|.+|.++|+|+
T Consensus 398 EPi~~v~i~vP~e~~G~V~~~l~~---RrG~~~----~m~------------~~~~~~~~l~~~vP~~~l~~y~~~l~s~ 458 (607)
T PRK10218 398 EPYENVTLDVEEQHQGSVMQALGE---RKGDLK----NMN------------PDGKGRVRLDYVIPSRGLIGFRSEFMTM 458 (607)
T ss_pred CCeEEEEEEechhhHHHHHHHHHh---cCCEEe----ccE------------ECCCCEEEEEEEcCHHHHhhHHHHhhhh
Confidence 579999999999999999999976 355521 111 1123568999999999999999999999
Q ss_pred ccCceeEEEEecccccCC
Q psy11837 158 SSGRSHFSMEFLCFKQVS 175 (192)
Q Consensus 158 T~G~g~~~~~~~~y~~v~ 175 (192)
|+|+|.|+++|+||+|+|
T Consensus 459 T~G~g~~~~~f~~Y~~~~ 476 (607)
T PRK10218 459 TSGTGLLYSTFSHYDDVR 476 (607)
T ss_pred CCCeEEEEEEecCccCCC
Confidence 999999999999999999
No 47
>KOG0467|consensus
Probab=99.16 E-value=2.5e-11 Score=110.80 Aligned_cols=104 Identities=15% Similarity=0.229 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHHHHHHcCceeeeeeEEEEEEecCCchhhHHHHHhhcCceeeeee--ecCCeEEEEEeecchhhcchhh
Q psy11837 20 YVILMCIATGASMALKEAGCILLEPYMYLEIISDEQYVHGILADLSRRRADIRSVE--DRGSSKVIIAEAPLSELLGYCQ 97 (192)
Q Consensus 20 ~~~~~a~~~~~~~al~~ag~~l~EPv~~v~I~vp~~~~g~V~~~l~~rrg~i~~~~--~~~~~~~i~~~vP~~~~~~~~~ 97 (192)
.|.+.|+..+|++|++...|++..|||.|+|.+..+++|+|...|++|+|.|++-+ +..+.+.|++.+|+.+.++|..
T Consensus 727 GQviTa~Kescr~Afl~~~pRl~~aMYsC~I~t~~e~LGkvYAVlskR~gkVLsEem~EgT~~F~V~aliPVvESFgFad 806 (887)
T KOG0467|consen 727 GQLITAVKDSCRAAFLCWSPRIMAAMYSCDIQTASEVLGKVYAVLSKRHGKVLSEEMKEGTGFFIVTALIPVVESFGFAD 806 (887)
T ss_pred ceeHHHHHHHHHHHHhcCCHHHhhhheeeeeeehHHHhhhHHhhhhhhcchhhhhhhhCCCCcEEEEEEeeeeccccHHH
Confidence 67999999999999999999999999999999999999999999999999997544 3467899999999999999999
Q ss_pred hhhhhccceEEeeeeecceeecCchH
Q psy11837 98 RVRTLSSGRSHFSMEFLCFKQVSSQN 123 (192)
Q Consensus 98 ~L~s~T~G~g~~~~~~~~y~~~p~~~ 123 (192)
+||..|+|-+.-.+.|+||+-++.|+
T Consensus 807 eiRK~TSG~A~pQLvFShwEvId~DP 832 (887)
T KOG0467|consen 807 EIRKGTSGAASPQLVFSHWEVIDEDP 832 (887)
T ss_pred HHhhccccccchhhhccccEEecCCC
Confidence 99999999999999999999888775
No 48
>KOG0464|consensus
Probab=99.11 E-value=1.2e-10 Score=100.79 Aligned_cols=147 Identities=18% Similarity=0.259 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHHHcCceeeeeeEEEEEEecC-----CchhhH-HHHHhhcCceeeeeee-----cCCeEEEEEeecc-h
Q psy11837 23 LMCIATGASMALKEAGCILLEPYMYLEIISDE-----QYVHGI-LADLSRRRADIRSVED-----RGSSKVIIAEAPL-S 90 (192)
Q Consensus 23 ~~a~~~~~~~al~~ag~~l~EPv~~v~I~vp~-----~~~g~V-~~~l~~rrg~i~~~~~-----~~~~~~i~~~vP~-~ 90 (192)
..|+..||..|+.. ||+++.|+..|.|++.+ +...+. ++.++.+ ...+++.. ..|.|++++++-- +
T Consensus 594 qeaie~g~~na~~~-gpl~g~pi~~v~itl~~~~i~~gk~n~alisac~qk-cvqealkkad~~l~eplm~lei~i~~dd 671 (753)
T KOG0464|consen 594 QEAIEEGCHNACLN-GPLAGSPIHAVAITLHECIIHGGKINPALISACAQK-CVQEALKKADKQLLEPLMELEIEIANDD 671 (753)
T ss_pred HHHHHhhHHHHHhc-CCccCCchhheeEeeEEEEecCCcCCHHHHHHHHHH-HHHHHHhhhhHHHhhhhhheEEEEecCC
Confidence 67999999999987 99999999999998764 333232 3443332 12222222 1468888888855 4
Q ss_pred hhcchhhhhhhhccceEEeeeeecceeecCchHHHHHHhcccCCCcceeccCchhhhhhhhhhhhhhccCceeEEEEecc
Q psy11837 91 ELLGYCQRVRTLSSGRSHFSMEFLCFKQVSSQNEAQAVRNITGFDPVIIAEAPLSELLGYCQRVRTLSSGRSHFSMEFLC 170 (192)
Q Consensus 91 ~~~~~~~~L~s~T~G~g~~~~~~~~y~~~p~~~~~~i~~~~~~~~~~i~a~~P~~~~~~y~~~lrs~T~G~g~~~~~~~~ 170 (192)
.+.-+..||.. .|+.|. ... .........|.|.+||+|+++|+..||.+|+|-|.|.++|.+
T Consensus 672 ~~qpiladl~q---rr~~~e-------~~~--------aredneirri~~~lplaei~~~s~~lrtltsg~a~~ale~~~ 733 (753)
T KOG0464|consen 672 PLQPILADLAQ---RRAHFE-------EID--------AREDNEIRRICAFLPLAEIEGLSKTLRTLTSGFADFALEFRG 733 (753)
T ss_pred CccHHHHHHHH---hhccch-------hcc--------cccccchheeeEeeeHHHhhcHHHHHHHHhcccceEEEEecc
Confidence 45566667744 455531 111 001112345889999999999999999999999999999999
Q ss_pred cccCCcHHHHHHHHHhC-CC
Q psy11837 171 FKQVSSQNEAQAVRNIT-GF 189 (192)
Q Consensus 171 y~~v~~~~~~~~~~~~~-~~ 189 (192)
|+.|.++.+..|+..|. |+
T Consensus 734 yqamn~~dk~~il~kratg~ 753 (753)
T KOG0464|consen 734 YQAMNEHDKMEILKKRATGL 753 (753)
T ss_pred hhhcChHHHHHHHHhhccCC
Confidence 99999999999998886 54
No 49
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.09 E-value=7e-11 Score=103.54 Aligned_cols=113 Identities=21% Similarity=0.396 Sum_probs=98.0
Q ss_pred eeeeeeEEEEEEecCCchhhHHHHHhhcCceeeeeeecC-CeEEEEEeecchhhc-chhhhhhhhccceEEeeeeeccee
Q psy11837 40 ILLEPYMYLEIISDEQYVHGILADLSRRRADIRSVEDRG-SSKVIIAEAPLSELL-GYCQRVRTLSSGRSHFSMEFLCFK 117 (192)
Q Consensus 40 ~l~EPv~~v~I~vp~~~~g~V~~~l~~rrg~i~~~~~~~-~~~~i~~~vP~~~~~-~~~~~L~s~T~G~g~~~~~~~~y~ 117 (192)
.+.||+.++.|.+|++|+|+|++++..+||...++...+ +.+.+.+.+|++++. +|...|+|.|+|.++|.++|.+|+
T Consensus 403 ~i~EP~v~~~ii~P~eylG~vm~Lcq~kRG~~~~m~yl~~~rv~l~Y~lPl~Eiv~DFfDkLKS~skGYAS~DYe~~~y~ 482 (603)
T COG0481 403 EIEEPYVKATIITPQEYLGNVMELCQEKRGIQIDMEYLDQNRVMLTYELPLAEIVFDFFDKLKSISKGYASFDYEFIGYR 482 (603)
T ss_pred eeeCceeEEEEeCcHHHHHHHHHHHHHhcCceecceEecCceEEEEEecchHHHHHHHhHhhhccccceeeecccccccc
Confidence 578999999999999999999999999999999999875 789999999999985 999999999999999999999998
Q ss_pred ecCchHHHHHHhcccCCCcceeccCchhhhhhhhhhhhhhccCcee
Q psy11837 118 QVSSQNEAQAVRNITGFDPVIIAEAPLSELLGYCQRVRTLSSGRSH 163 (192)
Q Consensus 118 ~~p~~~~~~i~~~~~~~~~~i~a~~P~~~~~~y~~~lrs~T~G~g~ 163 (192)
+.+ ++ ..+..++++ |+..+.-..++-.+...||..
T Consensus 483 ~~~------lV----K~dIlvNge-~VDALs~ivHrd~A~~rgr~~ 517 (603)
T COG0481 483 ESD------LV----KVDILVNGE-KVDALSFIVHRDNAYERGREL 517 (603)
T ss_pred ccc------eE----EEEEEecCc-cccceeeeechhHHHHHHHHH
Confidence 643 22 234566776 788888888888888888863
No 50
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.08 E-value=9.3e-11 Score=107.51 Aligned_cols=77 Identities=16% Similarity=0.247 Sum_probs=64.4
Q ss_pred CCeEEEEEeecchhhcchhhhhhhhccceEEeeeeecceeecCchHHHHHHhcccCCCcceeccCchhhh-hhhhhhhhh
Q psy11837 78 GSSKVIIAEAPLSELLGYCQRVRTLSSGRSHFSMEFLCFKQVSSQNEAQAVRNITGFDPVIIAEAPLSEL-LGYCQRVRT 156 (192)
Q Consensus 78 ~~~~~i~~~vP~~~~~~~~~~L~s~T~G~g~~~~~~~~y~~~p~~~~~~i~~~~~~~~~~i~a~~P~~~~-~~y~~~lrs 156 (192)
.|++.+++.+|.++++++++++.+ .||.+. ++++ .+.+..+++++|++|| ++|..+|||
T Consensus 404 EP~~~~~i~~P~~~~G~vm~~~~~---rRG~~~----~~~~-------------~~~~~~i~~~~Pl~e~~~~~~~~Lks 463 (600)
T PRK05433 404 EPIVKATIIVPQEYVGAVMELCQE---KRGVQK----DMEY-------------LGNRVELTYELPLAEIVFDFFDRLKS 463 (600)
T ss_pred CCEEEEEEEecHHHHHHHHHHHHH---cCCEEe----CcEe-------------cCCeEEEEEEechHHhhhhHHHHhHh
Confidence 579999999999999999999976 355421 1111 1235889999999999 999999999
Q ss_pred hccCceeEEEEecccccC
Q psy11837 157 LSSGRSHFSMEFLCFKQV 174 (192)
Q Consensus 157 ~T~G~g~~~~~~~~y~~v 174 (192)
+|+|+|+|+++|+||++.
T Consensus 464 ~T~G~gs~~~~~~~Y~~~ 481 (600)
T PRK05433 464 VSRGYASLDYEFIGYRES 481 (600)
T ss_pred hcCCEEEEEEEECCcccc
Confidence 999999999999999875
No 51
>KOG0462|consensus
Probab=99.00 E-value=3.9e-10 Score=100.21 Aligned_cols=111 Identities=25% Similarity=0.436 Sum_probs=89.2
Q ss_pred eeeeeEEEEEEecCCchhhHHHHHhhcCceeeeeeec-CCeEEEEEeecchhhc-chhhhhhhhccceEEeeeeecceee
Q psy11837 41 LLEPYMYLEIISDEQYVHGILADLSRRRADIRSVEDR-GSSKVIIAEAPLSELL-GYCQRVRTLSSGRSHFSMEFLCFKQ 118 (192)
Q Consensus 41 l~EPv~~v~I~vp~~~~g~V~~~l~~rrg~i~~~~~~-~~~~~i~~~vP~~~~~-~~~~~L~s~T~G~g~~~~~~~~y~~ 118 (192)
.+||++..+|.+|++|+|.|++++..|||.+.++... ++...+++.+|++++. ||...|++.|+|.|+|++++++|+.
T Consensus 454 ~lEP~v~~tii~P~Ey~G~Vi~Lc~~rRgeq~dm~~i~~nr~~lky~lPl~elv~df~~~lks~tsGyAs~dye~~gY~~ 533 (650)
T KOG0462|consen 454 FLEPYVEATIITPDEYVGAVIELCSERRGEQKDMTYIDGNRVMLKYQLPLRELVGDFFDRLKSLTSGYASFDYEDAGYQA 533 (650)
T ss_pred hcCceEEEEEECcHHHHHHHHHHHHHhhhheecceeccCCeEEEEEecChHHHHHHHHHHHhccccceeEEeeccccccc
Confidence 4899999999999999999999999999999999885 5688999999999996 5999999999999999999999984
Q ss_pred cCchHHHHHHhcccCCCcceeccCchhhhhhhhhhhhhhccCce
Q psy11837 119 VSSQNEAQAVRNITGFDPVIIAEAPLSELLGYCQRVRTLSSGRS 162 (192)
Q Consensus 119 ~p~~~~~~i~~~~~~~~~~i~a~~P~~~~~~y~~~lrs~T~G~g 162 (192)
.+ ++ ..+..+++. ++.++....+...+...||.
T Consensus 534 sd------Lv----kldil~n~~-~vd~l~tivh~~~a~~rGr~ 566 (650)
T KOG0462|consen 534 SD------LV----KLDILLNGK-MVDGLSTIVHLSKAESRGRE 566 (650)
T ss_pred cc------ce----EEEeeccch-hhhhHHHHHHHHHHHHHHHH
Confidence 32 22 123334444 45566555555555555554
No 52
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=98.99 E-value=3.9e-10 Score=103.35 Aligned_cols=77 Identities=16% Similarity=0.245 Sum_probs=63.5
Q ss_pred CCeEEEEEeecchhhcchhhhhhhhccceEEeeeeecceeecCchHHHHHHhcccCCCcceeccCchhhh-hhhhhhhhh
Q psy11837 78 GSSKVIIAEAPLSELLGYCQRVRTLSSGRSHFSMEFLCFKQVSSQNEAQAVRNITGFDPVIIAEAPLSEL-LGYCQRVRT 156 (192)
Q Consensus 78 ~~~~~i~~~vP~~~~~~~~~~L~s~T~G~g~~~~~~~~y~~~p~~~~~~i~~~~~~~~~~i~a~~P~~~~-~~y~~~lrs 156 (192)
.|++.+++.+|.+++++++++|.+ .||.+. ++++ ..+.+..+.+++|++|| ++|..+|||
T Consensus 400 EP~~~~~i~~P~~~~G~vm~~~~~---rRG~~~----~~~~------------~~~~~~~i~~~~Plae~~~~~~~~Lks 460 (595)
T TIGR01393 400 EPYVKATIITPTEYLGPIMTLCQE---KRGVQT----NMEY------------LDPNRVELIYEMPLAEIVYDFFDKLKS 460 (595)
T ss_pred CCeEEEEEEccHHHHHHHHHHHHH---cCCEEe----CcEE------------cCCCeEEEEEEeccchhhhchhHHhhh
Confidence 579999999999999999999976 355421 1111 11235789999999997 999999999
Q ss_pred hccCceeEEEEeccccc
Q psy11837 157 LSSGRSHFSMEFLCFKQ 173 (192)
Q Consensus 157 ~T~G~g~~~~~~~~y~~ 173 (192)
+|+|+|+|+++|+||++
T Consensus 461 ~T~G~gs~~~~~~~Y~~ 477 (595)
T TIGR01393 461 ISRGYASFDYELIGYRP 477 (595)
T ss_pred hcCCEEEEEEEECCccc
Confidence 99999999999999987
No 53
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=98.89 E-value=1.8e-09 Score=94.70 Aligned_cols=86 Identities=15% Similarity=0.286 Sum_probs=80.2
Q ss_pred CceeeeeeEEEEEEecCCchhhHHHHHhhcCceeeeeeec-CCeEEEEEeecchhhcchhhhhhhhccceEEeeeeecce
Q psy11837 38 GCILLEPYMYLEIISDEQYVHGILADLSRRRADIRSVEDR-GSSKVIIAEAPLSELLGYCQRVRTLSSGRSHFSMEFLCF 116 (192)
Q Consensus 38 g~~l~EPv~~v~I~vp~~~~g~V~~~l~~rrg~i~~~~~~-~~~~~i~~~vP~~~~~~~~~~L~s~T~G~g~~~~~~~~y 116 (192)
.....||+..+.|.+|+++.|.|++.|+.|+|...++... +++..+++.+|.+.+.||.+++.+.|+|.|.++..|++|
T Consensus 393 dG~~~EP~E~v~iDv~ee~~G~Vie~lg~RKgem~~M~~~g~G~~Rlef~iPaRGLIGfrteFlt~TrG~Gi~n~~F~~Y 472 (603)
T COG1217 393 DGVKCEPFEEVTIDVPEEHQGAVIEKLGERKGEMKDMAPDGKGRVRLEFVIPARGLIGFRTEFLTMTRGTGIMNHSFDHY 472 (603)
T ss_pred CCcCcCcceeEEecCchhhhhHHHHHHhhhhHhHhhcccCCCCeEEEEEEccCcceeccchheeeccccceeeeeccccc
Confidence 3467899999999999999999999999999999999876 569999999999999999999999999999999999999
Q ss_pred eecCchH
Q psy11837 117 KQVSSQN 123 (192)
Q Consensus 117 ~~~p~~~ 123 (192)
+++.++.
T Consensus 473 ~p~~g~i 479 (603)
T COG1217 473 RPVKGEI 479 (603)
T ss_pred ccccccc
Confidence 9988754
No 54
>KOG0469|consensus
Probab=98.76 E-value=1.9e-08 Score=89.07 Aligned_cols=152 Identities=21% Similarity=0.213 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHHHHHcCceeeeeeEEEEEEecCCchhhH-HH-----HH-hhcCceeeeeeec-----CCeEEEEEeec
Q psy11837 21 VILMCIATGASMALKEAGCILLEPYMYLEIISDEQYVHGI-LA-----DL-SRRRADIRSVEDR-----GSSKVIIAEAP 88 (192)
Q Consensus 21 ~~~~a~~~~~~~al~~ag~~l~EPv~~v~I~vp~~~~g~V-~~-----~l-~~rrg~i~~~~~~-----~~~~~i~~~vP 88 (192)
++...+..|++.|-++ ||+..|-+-.|+..+.+.-+|+= ++ .+ ..||...-++..+ .|+..+++.+|
T Consensus 658 EIKdsVvagFqwA~ke-G~l~~E~mRgvrfni~DvtLHADAIHRGggQiipt~rr~~ya~~l~A~P~l~EPvylvEIq~p 736 (842)
T KOG0469|consen 658 EIKDSVVAGFQWATKE-GPLFGENMRGVRFNILDVTLHADAIHRGGGQIIPTARRVLYASVLTAGPILQEPVYLVEIQCP 736 (842)
T ss_pred HHHHHHHHHHHHHhcc-CCcccccccceeEEeeeeeeehhhhhcCCCeechHHHHHHHHHHHhcCceecCceEEEEEeCc
Confidence 3566667777777765 99999999999988877654431 11 01 0122211111111 46889999999
Q ss_pred chhhcchhhhhhhhccceEEeeeeecceeecCchHHHHHHhcccCCCcceeccCchhhhhhhhhhhhhhccCceeEEEEe
Q psy11837 89 LSELLGYCQRVRTLSSGRSHFSMEFLCFKQVSSQNEAQAVRNITGFDPVIIAEAPLSELLGYCQRVRTLSSGRSHFSMEF 168 (192)
Q Consensus 89 ~~~~~~~~~~L~s~T~G~g~~~~~~~~y~~~p~~~~~~i~~~~~~~~~~i~a~~P~~~~~~y~~~lrs~T~G~g~~~~~~ 168 (192)
...++++.+.|.+. ||.. |+ .+.+| ......|+|..|+.|-|+|..+|||-|.|++.=.|.|
T Consensus 737 e~avGgiy~vLn~k---RG~v---~~-e~q~~-----------Gtp~f~vkayLPVnESFgFt~dLrs~t~GqAfpq~vF 798 (842)
T KOG0469|consen 737 EQAVGGIYGVLNRK---RGHV---FE-EEQVP-----------GTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQMVF 798 (842)
T ss_pred hhhhchhhheeecc---ccce---ec-ccccC-----------CCcceEEEEEeecccccccchhhhcccCCccccceee
Confidence 99999999998663 4431 11 11111 1235789999999999999999999999999999999
Q ss_pred cccccCCcHH------HHHHH---HHhCCCCC
Q psy11837 169 LCFKQVSSQN------EAQAV---RNITGFDP 191 (192)
Q Consensus 169 ~~y~~v~~~~------~~~~~---~~~~~~~~ 191 (192)
+||+.+|.+- ..+++ +.|||+++
T Consensus 799 dHws~lpgdp~dp~sk~~~iV~~~RKrkglke 830 (842)
T KOG0469|consen 799 DHWSILPGDPLDPTSKPGQIVLATRKRKGLKE 830 (842)
T ss_pred eccccCCCCCCCCCccchHHHHHHHHhcCCCC
Confidence 9999998743 23333 77888875
No 55
>KOG0468|consensus
Probab=98.48 E-value=6.4e-08 Score=88.01 Aligned_cols=141 Identities=14% Similarity=0.156 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHHHcCceeeeeeEEEEEEecCCchhh-HHH-----HH-hhcCce----eeeeee-cCCeEEEEEeecc
Q psy11837 22 ILMCIATGASMALKEAGCILLEPYMYLEIISDEQYVHG-ILA-----DL-SRRRAD----IRSVED-RGSSKVIIAEAPL 89 (192)
Q Consensus 22 ~~~a~~~~~~~al~~ag~~l~EPv~~v~I~vp~~~~g~-V~~-----~l-~~rrg~----i~~~~~-~~~~~~i~~~vP~ 89 (192)
....+..|++-+.+ .||+..||+.+++..+-+....+ .++ .+ ..||.. +.+... ..|+..|+++.|.
T Consensus 761 vkesivQGFqW~tr-EGPLc~EpIr~VkfKlld~~ia~e~l~rgggQiIPtaRrv~YsafL~AtPrLmEP~Y~VEi~apa 839 (971)
T KOG0468|consen 761 VKESIVQGFQWGTR-EGPLCDEPIRNVKFKLLDAVIAPEPLHRGGGQIIPTARRVAYSAFLMATPRLMEPVYLVEITAPA 839 (971)
T ss_pred HHHHHHHHHHHHhc-cCCccCCcccceeEEEeecccCccccccCCCccchHHHHHHHHHHHhhchhhcCceEEEEEeccc
Confidence 44455566666665 49999999999998876543211 010 00 112221 111111 1578899999999
Q ss_pred hhhcchhhhhhhhccceEEeeeeecceeecCchHHHHHHhcccCCCcceeccCchhhhhhhhhhhhhhccCceeEEEEec
Q psy11837 90 SELLGYCQRVRTLSSGRSHFSMEFLCFKQVSSQNEAQAVRNITGFDPVIIAEAPLSELLGYCQRVRTLSSGRSHFSMEFL 169 (192)
Q Consensus 90 ~~~~~~~~~L~s~T~G~g~~~~~~~~y~~~p~~~~~~i~~~~~~~~~~i~a~~P~~~~~~y~~~lrs~T~G~g~~~~~~~ 169 (192)
..+.-+...|.. +.|+..-.. ++|+.. --.++|.+|+=+-++|-++||--|||+|...+.|.
T Consensus 840 d~v~~Vy~vl~r-RRGhV~~d~------p~pGSP-----------ly~v~a~iPvieSfGFETDLR~hTqGqa~C~~vF~ 901 (971)
T KOG0468|consen 840 DCVPAVYTVLSR-RRGHVTQDI------PVPGSP-----------LYTVKAYLPVIESFGFETDLRVHTQGQAFCLSVFD 901 (971)
T ss_pred chHHHHHHHHHh-hcCceeecC------CCCCCc-----------hhheeeecccccccCcccceeeeccchhHHHHhhh
Confidence 998777766644 334433111 222221 24689999999999999999999999999999999
Q ss_pred ccccCCcHHHHH
Q psy11837 170 CFKQVSSQNEAQ 181 (192)
Q Consensus 170 ~y~~v~~~~~~~ 181 (192)
||+.||++-.++
T Consensus 902 HW~~VPGDpLDK 913 (971)
T KOG0468|consen 902 HWRIVPGDPLDK 913 (971)
T ss_pred hcccCCCCcccc
Confidence 999999866554
No 56
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.35 E-value=3.1e-07 Score=85.43 Aligned_cols=88 Identities=11% Similarity=0.059 Sum_probs=72.2
Q ss_pred CChHHHHHHHHHHHHHHHHHcCceeeeeeEEEEEEecCCchhhHH-HHHh----hcCceeeeeeec-----CCeEEEEEe
Q psy11837 17 PRTYVILMCIATGASMALKEAGCILLEPYMYLEIISDEQYVHGIL-ADLS----RRRADIRSVEDR-----GSSKVIIAE 86 (192)
Q Consensus 17 ~~~~~~~~a~~~~~~~al~~ag~~l~EPv~~v~I~vp~~~~g~V~-~~l~----~rrg~i~~~~~~-----~~~~~i~~~ 86 (192)
..|.+|++++.+|+++|+++ ||+.+||+++++|++.++.+|.+. ++++ .++|...++... .|+|.++++
T Consensus 531 ~~P~~yi~~ve~G~~~a~~~-GpLag~pv~dvkv~L~dgs~h~vdss~~af~~a~~~a~~~a~~~a~P~lLEPi~~veI~ 609 (697)
T COG0480 531 VVPKEYIPAVEKGFREALKS-GPLAGYPVVDVKVTLLDGSYHEVDSSEMAFKIAASLAFKEAMLKAKPVLLEPIMKVEIT 609 (697)
T ss_pred cCchhhhHHHHHHHHHHHhc-CCCCCCceEeeEEEEEcCccccCCCCHHHHHHHHHHHHHHHHhhCCceEecceEEEEEE
Confidence 56889999999999999986 999999999999999999998885 4444 344444444433 479999999
Q ss_pred ecchhhcchhhhhhhhccceEE
Q psy11837 87 APLSELLGYCQRVRTLSSGRSH 108 (192)
Q Consensus 87 vP~~~~~~~~~~L~s~T~G~g~ 108 (192)
+|..+++++..+|.+ .||.
T Consensus 610 ~P~d~~G~V~~~l~~---rRG~ 628 (697)
T COG0480 610 TPEEYMGDVIGDLNS---RRGQ 628 (697)
T ss_pred cchhhhchhHHhhhh---cceE
Confidence 999999999999974 3555
No 57
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.17 E-value=2e-06 Score=80.87 Aligned_cols=83 Identities=16% Similarity=0.144 Sum_probs=56.8
Q ss_pred ChHHHHHHHHHHHHHHHHHcCceeeeeeEEEEEEecCCchhh--HHH-H----HhhcCceeeeeeec-----CCeEEEEE
Q psy11837 18 RTYVILMCIATGASMALKEAGCILLEPYMYLEIISDEQYVHG--ILA-D----LSRRRADIRSVEDR-----GSSKVIIA 85 (192)
Q Consensus 18 ~~~~~~~a~~~~~~~al~~ag~~l~EPv~~v~I~vp~~~~g~--V~~-~----l~~rrg~i~~~~~~-----~~~~~i~~ 85 (192)
.|.+|++|+.+|+++|+++ ||+.+|||.+|.+++.+..+|. +.+ . .+.+++...++..+ .|++.+++
T Consensus 554 ~~~~~~~av~~G~~~a~~~-GpL~g~pv~~v~v~l~d~~~h~d~~~~~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~veI 632 (731)
T PRK07560 554 YLNEVMELIIEGFREAMKE-GPLAAEPVRGVKVRLHDAKLHEDAIHRGPAQVIPAVRNAIFAAMLTAKPTLLEPIQKVDI 632 (731)
T ss_pred CHHHHHHHHHHHHHHHHhc-CCccCCceeeEEEEEEEeeecccccccccchHHHHHHHHHHHHHHhCCCEEeecEEEEEE
Confidence 5677888888888888875 8888888888888888665552 110 0 22333333333332 46888888
Q ss_pred eecchhhcchhhhhhh
Q psy11837 86 EAPLSELLGYCQRVRT 101 (192)
Q Consensus 86 ~vP~~~~~~~~~~L~s 101 (192)
.+|.++++++..+|.+
T Consensus 633 ~~p~~~~g~v~~~L~~ 648 (731)
T PRK07560 633 NVPQDYMGAVTREIQG 648 (731)
T ss_pred EecHHHhhHHHHHHHh
Confidence 8888888888888855
No 58
>PRK00007 elongation factor G; Reviewed
Probab=98.08 E-value=3.8e-06 Score=78.62 Aligned_cols=83 Identities=8% Similarity=0.061 Sum_probs=66.0
Q ss_pred ChHHHHHHHHHHHHHHHHHcCceeeeeeEEEEEEecCCchhhHH-HHH----hhcCceeeeeeec-----CCeEEEEEee
Q psy11837 18 RTYVILMCIATGASMALKEAGCILLEPYMYLEIISDEQYVHGIL-ADL----SRRRADIRSVEDR-----GSSKVIIAEA 87 (192)
Q Consensus 18 ~~~~~~~a~~~~~~~al~~ag~~l~EPv~~v~I~vp~~~~g~V~-~~l----~~rrg~i~~~~~~-----~~~~~i~~~v 87 (192)
.|.+|++|+.+|+++|+++ ||+.+||+.+|.|++.+..++.+. +.. +.++|...++..+ .|++.+++.+
T Consensus 534 ~~~~~~~av~~G~~~a~~~-GpL~g~pv~~v~v~l~d~~~~~~ds~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~ 612 (693)
T PRK00007 534 IPKEYIPAVDKGIQEAMES-GVLAGYPVVDVKVTLFDGSYHDVDSSEMAFKIAGSMAFKEAAKKANPVLLEPIMKVEVVT 612 (693)
T ss_pred CcHHHHHHHHHHHHHHHhc-CCcCCCceeeEEEEEEecccCCCCCcHHHHHHHHHHHHHHHHHHCCCEEecCcEEEEEEe
Confidence 4778999999999999986 999999999999999988777653 222 2334433333332 5799999999
Q ss_pred cchhhcchhhhhhh
Q psy11837 88 PLSELLGYCQRVRT 101 (192)
Q Consensus 88 P~~~~~~~~~~L~s 101 (192)
|.+.++.+..+|.+
T Consensus 613 p~~~~g~v~~~L~~ 626 (693)
T PRK00007 613 PEEYMGDVIGDLNS 626 (693)
T ss_pred chhhhhhHHHHHHh
Confidence 99999999999966
No 59
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.03 E-value=2.6e-06 Score=80.05 Aligned_cols=83 Identities=12% Similarity=0.098 Sum_probs=66.6
Q ss_pred ChHHHHHHHHHHHHHHHHHcCceeeeeeEEEEEEecCCchhh--HH-HHH----hhcCceeeeeeec-----CCeEEEEE
Q psy11837 18 RTYVILMCIATGASMALKEAGCILLEPYMYLEIISDEQYVHG--IL-ADL----SRRRADIRSVEDR-----GSSKVIIA 85 (192)
Q Consensus 18 ~~~~~~~a~~~~~~~al~~ag~~l~EPv~~v~I~vp~~~~g~--V~-~~l----~~rrg~i~~~~~~-----~~~~~i~~ 85 (192)
.|.+|++|+.+|+++|+++ ||+.+|||.+|.|++.+..+|. |. +.. +.++|...++..+ .|++.+++
T Consensus 552 i~~~~~~av~~G~~~a~~~-GpL~g~pv~~v~v~l~d~~~h~~~vds~~~~f~~a~~~a~~~a~~~a~p~LlEPi~~~ei 630 (720)
T TIGR00490 552 YLDETKELILEGFREAMRN-GPIAREKCMGVKVKLMDAKLHEDAVHRGPAQVIPAVRSGIFAAMMQAKPVLLEPYQKVFI 630 (720)
T ss_pred CHHHHHHHHHHHHHHHHHc-CCcCCCcccceEEEEEeeccccccccCccchHHHHHHHHHHHHHHhCCCeEecceEEEEE
Confidence 6789999999999999986 9999999999999999887763 42 222 2344544444443 57999999
Q ss_pred eecchhhcchhhhhhh
Q psy11837 86 EAPLSELLGYCQRVRT 101 (192)
Q Consensus 86 ~vP~~~~~~~~~~L~s 101 (192)
.+|.+.++++.++|.+
T Consensus 631 ~~p~~~~g~v~~~L~~ 646 (720)
T TIGR00490 631 NVPQDMMGAATREIQN 646 (720)
T ss_pred EccHHHHhHHHHHHhh
Confidence 9999999999999965
No 60
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=97.92 E-value=7.2e-06 Score=78.30 Aligned_cols=79 Identities=20% Similarity=0.128 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHcCceeeeeeEEEEEEecCCchhh--HH----HH-HhhcCceeeeeeec-----CCeEEEEEeecc
Q psy11837 22 ILMCIATGASMALKEAGCILLEPYMYLEIISDEQYVHG--IL----AD-LSRRRADIRSVEDR-----GSSKVIIAEAPL 89 (192)
Q Consensus 22 ~~~a~~~~~~~al~~ag~~l~EPv~~v~I~vp~~~~g~--V~----~~-l~~rrg~i~~~~~~-----~~~~~i~~~vP~ 89 (192)
+++|+.+|+++|+++ ||+.+||+.+|.|++.+...+. +. .. .+.++|...++..+ .|++.+++.+|.
T Consensus 660 i~~ai~~G~~~a~~~-GpL~g~Pv~~V~v~l~d~~~h~d~~~~~~~~f~~A~~~a~~~Al~~a~p~LlEPi~~veI~~p~ 738 (843)
T PLN00116 660 IKDSVVAGFQWATKE-GALAEENMRGICFEVCDVVLHADAIHRGGGQIIPTARRVIYASQLTAKPRLLEPVYLVEIQAPE 738 (843)
T ss_pred HHHHHHHHHHHHHhc-CCccCCeeeeEEEEEEEeeccCcccccchhhHHHHHHHHHHHHHHhCCCEEeeceeEEEEEccH
Confidence 334666666666654 6666666666666665444332 11 00 11222222222221 356666666666
Q ss_pred hhhcchhhhhhh
Q psy11837 90 SELLGYCQRVRT 101 (192)
Q Consensus 90 ~~~~~~~~~L~s 101 (192)
+.++++.++|.+
T Consensus 739 ~~~G~V~~dL~~ 750 (843)
T PLN00116 739 QALGGIYSVLNQ 750 (843)
T ss_pred HHHhHHHHHHHh
Confidence 666666666643
No 61
>cd01684 Tet_like_IV EF-G_domain IV_RPP domain is a part of bacterial ribosomal protected proteins (RPP) family. RPPs such as tetracycline resistance proteins Tet(M) and Tet(O) mediate tetracycline resistance in both gram-positive and -negative species. Tetracyclines inhibit the accommodation of aminoacyl-tRNA into ribosomal A site and therefore prevent the addition of new amino acids to the growing polypeptide. RPPs Tet(M) confer tetracycline resistance by releasing tetracycline from the ribosome and thereby freeing the ribosome from inhibitory effects of the drug, such that aa-tRNA can bind to the A site and protein synthesis can continue.
Probab=97.72 E-value=2.2e-05 Score=57.26 Aligned_cols=51 Identities=8% Similarity=-0.057 Sum_probs=42.8
Q ss_pred CChHHHHHHHHHHHHHHHHHcCceeeeeeEEEEEEecCCchhhHH-HHHhhcCc
Q psy11837 17 PRTYVILMCIATGASMALKEAGCILLEPYMYLEIISDEQYVHGIL-ADLSRRRA 69 (192)
Q Consensus 17 ~~~~~~~~a~~~~~~~al~~ag~~l~EPv~~v~I~vp~~~~g~V~-~~l~~rrg 69 (192)
.+|.+|++|+++|++++|++ ||+ ++|+.+|+|++.+...+.+. ++++.+.+
T Consensus 51 ~ip~~~~~aie~g~~~al~~-G~l-G~pv~dv~V~l~~~~~h~~~ss~~af~~A 102 (115)
T cd01684 51 SLPRSFQNAVEETVRETLQQ-GLY-GWEVTDCKVTLTYGRYHSPVSTAADFREL 102 (115)
T ss_pred cCCHHHHHHHHHHHHHHHhc-CCC-CCCEeeEEEEEEEeeecCCCCCHHHHHHH
Confidence 37899999999999999997 999 99999999999988887773 45554433
No 62
>KOG0467|consensus
Probab=97.68 E-value=4.2e-05 Score=70.86 Aligned_cols=135 Identities=12% Similarity=0.124 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHHHcCceeeeeeEEEEEEecCCchhhHHHHHhhcCceeeeeeec--------------CCeEEEEEee
Q psy11837 22 ILMCIATGASMALKEAGCILLEPYMYLEIISDEQYVHGILADLSRRRADIRSVEDR--------------GSSKVIIAEA 87 (192)
Q Consensus 22 ~~~a~~~~~~~al~~ag~~l~EPv~~v~I~vp~~~~g~V~~~l~~rrg~i~~~~~~--------------~~~~~i~~~v 87 (192)
|-.++..+|.-+... ||...||++.+.+.+.......+ +....-.|.+.....+ ..+..-.+.+
T Consensus 682 l~~~ivsgfql~~~s-GPlc~Ep~~g~~~~~es~~~e~~-e~~~~~~GQviTa~Kescr~Afl~~~pRl~~aMYsC~I~t 759 (887)
T KOG0467|consen 682 LSESIVSGFQLATSS-GPLCNEPMQGICFVLESGSAEEM-ESDGNIGGQLITAVKDSCRAAFLCWSPRIMAAMYSCDIQT 759 (887)
T ss_pred HHHHHhhhHhhhhcc-CcccccCcccEEEEeeccCcccc-cccCCcCceeHHHHHHHHHHHHhcCCHHHhhhheeeeeee
Confidence 557778888888875 99999999999999876322121 1111222322211111 1244556666
Q ss_pred cchhhcchhhhhhhhccceEEeeeeecceeecCchHHHHHHhcccCCCcceeccCchhhhhhhhhhhhhhccCceeEEEE
Q psy11837 88 PLSELLGYCQRVRTLSSGRSHFSMEFLCFKQVSSQNEAQAVRNITGFDPVIIAEAPLSELLGYCQRVRTLSSGRSHFSME 167 (192)
Q Consensus 88 P~~~~~~~~~~L~s~T~G~g~~~~~~~~y~~~p~~~~~~i~~~~~~~~~~i~a~~P~~~~~~y~~~lrs~T~G~g~~~~~ 167 (192)
..+.+|.+...|.. .+|.+ +.+| + +...+.+.|+|.+|+.|-|+|+.++|-.|+|-+.-.+.
T Consensus 760 ~~e~LGkvYAVlsk---R~gkV---------LsEe-----m-~EgT~~F~V~aliPVvESFgFadeiRK~TSG~A~pQLv 821 (887)
T KOG0467|consen 760 ASEVLGKVYAVLSK---RHGKV---------LSEE-----M-KEGTGFFIVTALIPVVESFGFADEIRKGTSGAASPQLV 821 (887)
T ss_pred hHHHhhhHHhhhhh---hcchh---------hhhh-----h-hCCCCcEEEEEEeeeeccccHHHHHhhccccccchhhh
Confidence 77777777777743 33331 1111 1 12345789999999999999999999999999999999
Q ss_pred ecccccCCc
Q psy11837 168 FLCFKQVSS 176 (192)
Q Consensus 168 ~~~y~~v~~ 176 (192)
|+|||-++.
T Consensus 822 FShwEvId~ 830 (887)
T KOG0467|consen 822 FSHWEVIDE 830 (887)
T ss_pred ccccEEecC
Confidence 999998876
No 63
>cd01693 mtEFG2_like_IV mtEF-G2 domain IV. This subfamily is a part the of mitochondrial transcriptional elongation factor, mtEF-G2. Mitochondrial translation is crucial for maintaining mitochondrial function and mutations in this system lead to a breakdown in the respiratory chain-oxidative phosphorylation system and to impaired maintenance of mitochondrial DNA. In complex with GTP, EF-G promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome.
Probab=97.33 E-value=0.00026 Score=51.75 Aligned_cols=43 Identities=19% Similarity=0.054 Sum_probs=37.7
Q ss_pred CChHHHHHHHHHHHHHHHHHcCceeeeeeEEEEEEecCCchhhH
Q psy11837 17 PRTYVILMCIATGASMALKEAGCILLEPYMYLEIISDEQYVHGI 60 (192)
Q Consensus 17 ~~~~~~~~a~~~~~~~al~~ag~~l~EPv~~v~I~vp~~~~g~V 60 (192)
.+|.+|++|+.+|++++|++ ||+.++|+.+|+|++.+...+..
T Consensus 56 ~~p~~~~~ai~~g~~~al~~-Gpl~G~pv~~v~V~l~~~~~~~~ 98 (120)
T cd01693 56 VLLKRIQEAVENGVHSALLQ-GPLLGFPVQDVAITLHSLTIGPG 98 (120)
T ss_pred cChHHHHHHHHHHHHHHHHc-CCccCCceeeEEEEEEeCCcCCC
Confidence 36788999999999999986 99999999999999997665554
No 64
>TIGR00257 IMPACT_YIGZ uncharacterized protein, YigZ family. This uncharacterized protein family includes YigZ, which has been crystallized, from E. coli. YigZ is homologous to the protein product of the mouse IMPACT gene. Crystallography shows a two-domain stucture, and the C-terminal domain is suggested to bind nucleic acids. The function is unknown. Note that the ortholog from E. coli was shown fused to the pepQ gene in GenBank entry X54687. This caused occasional misidentification of this protein as pepQ; this family is found in a number of species that lack pepQ.
Probab=97.27 E-value=0.0036 Score=50.22 Aligned_cols=89 Identities=12% Similarity=0.103 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHHHHcCceeeeeeEEEEEEecCCchhhHHHHHhhcCceeeeeeecCCeEEEEEeecchhhcchhhhh
Q psy11837 20 YVILMCIATGASMALKEAGCILLEPYMYLEIISDEQYVHGILADLSRRRADIRSVEDRGSSKVIIAEAPLSELLGYCQRV 99 (192)
Q Consensus 20 ~~~~~a~~~~~~~al~~ag~~l~EPv~~v~I~vp~~~~g~V~~~l~~rrg~i~~~~~~~~~~~i~~~vP~~~~~~~~~~L 99 (192)
..++.|=..++.+||+.|+.....+...+.|.++....+.+...|....+.+.+.+..+ .+.+.+.+|....-.|...|
T Consensus 111 GGLvRAY~~aa~~al~~a~~~~~~~~~~~~~~~~y~~~~~v~~~l~~~~~~i~~~~y~~-~V~~~~~v~~~~~~~~~~~l 189 (204)
T TIGR00257 111 GGLIKAYGKSVLEALNNIQKEEKLELEILSLHCDYKQLDALERELKKFQLEIIKSNFSN-NVVLVEISGTKENLAFSEQL 189 (204)
T ss_pred chhHHHHHHHHHHHHHhCCeEEEEEEEEEEEEechhHHHHHHHHHHHCCCEEEeeEecC-CEEEEEEECHHHHHHHHHHH
Confidence 34777777888999999999999999999999999999999999999888887776644 48899999999999999999
Q ss_pred hhhccceEEe
Q psy11837 100 RTLSSGRSHF 109 (192)
Q Consensus 100 ~s~T~G~g~~ 109 (192)
..+|+|+..+
T Consensus 190 ~~~t~g~~~~ 199 (204)
T TIGR00257 190 TEISLGQLIL 199 (204)
T ss_pred HHHhCCeEEE
Confidence 9999998875
No 65
>PRK11568 hypothetical protein; Provisional
Probab=97.19 E-value=0.0054 Score=49.20 Aligned_cols=89 Identities=15% Similarity=0.171 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHHHHcCceeeeeeEEEEEEecCCchhhHHHHHhhcCceeeeeeecCCeEEEEEeecchhhcchhhhhh
Q psy11837 21 VILMCIATGASMALKEAGCILLEPYMYLEIISDEQYVHGILADLSRRRADIRSVEDRGSSKVIIAEAPLSELLGYCQRVR 100 (192)
Q Consensus 21 ~~~~a~~~~~~~al~~ag~~l~EPv~~v~I~vp~~~~g~V~~~l~~rrg~i~~~~~~~~~~~i~~~vP~~~~~~~~~~L~ 100 (192)
.++.|=..++.+||+.|+.....|...+.|.++....+.+...|....+.+.+.+... .+.+.+.+|......|...|.
T Consensus 112 GLvRAY~~aa~~al~~a~~~~~~~~~~~~i~~~y~~~~~v~~~l~~~~~~i~~~~y~~-~V~~~~~v~~~~~~~~~~~l~ 190 (204)
T PRK11568 112 GLVKAYGGGVQQALRQLTTQRKVPLTEYTLQCEYAQLAGIEALLGQFDGKIVNSEYQA-FVTLRVALPAAKVAEFSAKLA 190 (204)
T ss_pred hhHHHHHHHHHHHHHhCCeEEEEEeEEEEEEECcchHHHHHHHHHHCCCEEEcceecC-CEEEEEEECHHHHHHHHHHHH
Confidence 4777778888999999999999999999999999999999999999998887776643 478899999999999999999
Q ss_pred hhccceEEee
Q psy11837 101 TLSSGRSHFS 110 (192)
Q Consensus 101 s~T~G~g~~~ 110 (192)
..|+|++.+.
T Consensus 191 ~~t~g~~~~~ 200 (204)
T PRK11568 191 DFSRGSLQLL 200 (204)
T ss_pred HHhCCeEEEE
Confidence 9999988753
No 66
>KOG0462|consensus
Probab=97.07 E-value=0.00093 Score=60.33 Aligned_cols=77 Identities=18% Similarity=0.232 Sum_probs=60.4
Q ss_pred CCeEEEEEeecchhhcchhhhhhhhccceEEeeeeecceeecCchHHHHHHhcccCCCcceeccCchhhhhh-hhhhhhh
Q psy11837 78 GSSKVIIAEAPLSELLGYCQRVRTLSSGRSHFSMEFLCFKQVSSQNEAQAVRNITGFDPVIIAEAPLSELLG-YCQRVRT 156 (192)
Q Consensus 78 ~~~~~i~~~vP~~~~~~~~~~L~s~T~G~g~~~~~~~~y~~~p~~~~~~i~~~~~~~~~~i~a~~P~~~~~~-y~~~lrs 156 (192)
.|++.+++.+|.+++|.+..-+..+ ||.. ..+.+++ +....+.=..|++++.+ |-..|+|
T Consensus 456 EP~v~~tii~P~Ey~G~Vi~Lc~~r---Rgeq----~dm~~i~------------~nr~~lky~lPl~elv~df~~~lks 516 (650)
T KOG0462|consen 456 EPYVEATIITPDEYVGAVIELCSER---RGEQ----KDMTYID------------GNRVMLKYQLPLRELVGDFFDRLKS 516 (650)
T ss_pred CceEEEEEECcHHHHHHHHHHHHHh---hhhe----ecceecc------------CCeEEEEEecChHHHHHHHHHHHhc
Confidence 3688999999999999988877553 4431 1122222 23466788899999998 9999999
Q ss_pred hccCceeEEEEeccccc
Q psy11837 157 LSSGRSHFSMEFLCFKQ 173 (192)
Q Consensus 157 ~T~G~g~~~~~~~~y~~ 173 (192)
.|+|-|+|..+|++|++
T Consensus 517 ~tsGyAs~dye~~gY~~ 533 (650)
T KOG0462|consen 517 LTSGYASFDYEDAGYQA 533 (650)
T ss_pred cccceeEEeeccccccc
Confidence 99999999999999984
No 67
>cd01434 EFG_mtEFG1_IV EFG_mtEFG1_IV: domains similar to domain IV of the bacterial translational elongation factor (EF) EF-G. Included in this group is a domain of mitochondrial Elongation factor G1 (mtEFG1) proteins homologous to domain IV of EF-G. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provi
Probab=97.03 E-value=0.00057 Score=49.66 Aligned_cols=42 Identities=14% Similarity=0.159 Sum_probs=38.1
Q ss_pred ChHHHHHHHHHHHHHHHHHcCceeeeeeEEEEEEecCCchhhH
Q psy11837 18 RTYVILMCIATGASMALKEAGCILLEPYMYLEIISDEQYVHGI 60 (192)
Q Consensus 18 ~~~~~~~a~~~~~~~al~~ag~~l~EPv~~v~I~vp~~~~g~V 60 (192)
.|.+|++|+.+|+++++++ ||+.++|+.+|+|++.+...+.+
T Consensus 52 lp~~~~~ai~~g~~~a~~~-Gpl~G~pv~~v~V~l~~~~~~~~ 93 (116)
T cd01434 52 IPKEYIPAVEKGFREALEK-GPLAGYPVVDVKVTLYDGSYHDV 93 (116)
T ss_pred cCHHHHHHHHHHHHHHHhc-CcccCCccccEEEEEEeceeecC
Confidence 6788999999999999986 99999999999999998777664
No 68
>PF09186 DUF1949: Domain of unknown function (DUF1949); InterPro: IPR015269 Members of this entry are a set of functionally uncharacterised hypothetical bacterial proteins. They adopt a ferredoxin-like fold, with a beta-alpha-beta-beta-alpha-beta arrangement []. This entry contains the protein Impact, which is a translational regulator that ensures constant high levels of translation under amino acid starvation. It acts by interacting with Gcn1/Gcn1L1, thereby preventing activation of Gcn2 protein kinases (EIF2AK1 to 4) and subsequent down-regulation of protein synthesis. It is evolutionary conserved from eukaryotes to archaea []. ; PDB: 2CVE_A 1VI7_A.
Probab=96.83 E-value=0.0052 Score=38.34 Aligned_cols=56 Identities=18% Similarity=0.207 Sum_probs=48.8
Q ss_pred EEecCCchhhHHHHHhhcCceeeeeeecCCeEEEEEeecchhhcchhhhhhhhccce
Q psy11837 50 IISDEQYVHGILADLSRRRADIRSVEDRGSSKVIIAEAPLSELLGYCQRVRTLSSGR 106 (192)
Q Consensus 50 I~vp~~~~g~V~~~l~~rrg~i~~~~~~~~~~~i~~~vP~~~~~~~~~~L~s~T~G~ 106 (192)
|.++....+.+-+.|....+.+.+...... +.+.+.+|.++.-.|...|..+|+|+
T Consensus 1 i~~~Y~~~~~v~~~l~~~~~~i~~~~y~~~-V~~~v~v~~~~~~~f~~~l~~~t~G~ 56 (56)
T PF09186_consen 1 ISCDYSQYGKVERLLEQNGIEIVDEDYTDD-VTLTVAVPEEEVEEFKAQLTDLTSGR 56 (56)
T ss_dssp EEE-CCCHHHHHHHHHHTTTEEEEEEECTT-EEEEEEEECCCHHHHHHHHHHHTTT-
T ss_pred CEechhhHHHHHHHHHHCCCEEEcceecce-EEEEEEECHHHHHHHHHHHHHHcCCC
Confidence 567888899999999999999988877654 88999999999999999999999996
No 69
>cd01680 EFG_like_IV Elongation Factor G-like domain IV. This family includes the translational elongation factor termed EF-2 (for Archaea and Eukarya) and EF-G (for Bacteria), ribosomal protection proteins that mediate tetracycline resistance and, an evolutionarily conserved U5 snRNP-specific protein (U5-116kD). In complex with GTP, EF-G/EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome. It has been shown that EF-G/EF-2_IV domain mimics the shape of anticodon arm of the tRNA in the structurally homologous ternary complex of Petra, EF-Tu (another transcriptional elongation factor) and GTP analog. The tip portion of this domain is found in a position that overlaps the anticodon arm of the A-site tRNA, implying that EF-G/EF-2 displaces the A-site tRNA to the P-site by physical interaction with the anticodon arm.
Probab=96.75 E-value=0.0017 Score=46.86 Aligned_cols=40 Identities=13% Similarity=0.037 Sum_probs=35.3
Q ss_pred ChHHHHHHHHHHHHHHHHHcCceeeeeeEEEEEEecCCchh
Q psy11837 18 RTYVILMCIATGASMALKEAGCILLEPYMYLEIISDEQYVH 58 (192)
Q Consensus 18 ~~~~~~~a~~~~~~~al~~ag~~l~EPv~~v~I~vp~~~~g 58 (192)
.|..|+.++.+|++.++++ ||+.++|+.++.|++.+...+
T Consensus 52 ~~~~~~~ai~~g~~~a~~~-Gpl~g~pv~~v~v~l~~~~~~ 91 (116)
T cd01680 52 LPAELKEAVEEGIRDACAS-GPLTGYPLTDVRVTVLDVPYH 91 (116)
T ss_pred CCHHHHHHHHHHHHHHHhc-CcccCCceeeEEEEEEEEEec
Confidence 5688999999999999986 999999999999999865443
No 70
>PF03764 EFG_IV: Elongation factor G, domain IV; InterPro: IPR005517 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF2 (EF-G) is a G-protein. It brings about the translocation of peptidyl-tRNA and mRNA through a ratchet-like mechanism: the binding of GTP-EF2 to the ribosome causes a counter-clockwise rotation in the small ribosomal subunit; the hydrolysis of GTP to GDP by EF2 and the subsequent release of EF2 causes a clockwise rotation of the small subunit back to the starting position [, ]. This twisting action destabilises tRNA-ribosome interactions, freeing the tRNA to translocate along the ribosome upon GTP-hydrolysis by EF2. EF2 binding also affects the entry and exit channel openings for the mRNA, widening it when bound to enable the mRNA to translocate along the ribosome. EF2 has five domains. This entry represents domain IV found in EF2 (or EF-G) of both prokaryotes and eukaryotes. The EF2-GTP-ribosome complex undergoes extensive structural rearrangement for tRNA-mRNA movement to occur. Domain IV, which extends from the 'body' of the EF2 molecule much like a lever arm, appears to be essential for the structural transition to take place. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3J0E_H 1FNM_A 3IZP_E 2OM7_L 1KTV_A 2J7K_A 2BM1_A 2BM0_A 2BV3_A 1ZM3_E ....
Probab=96.51 E-value=0.00081 Score=49.00 Aligned_cols=43 Identities=16% Similarity=0.116 Sum_probs=36.5
Q ss_pred CChHHHHHHHHHHHHHHHHHcCceeeeeeEEEEEEecCCchhhH
Q psy11837 17 PRTYVILMCIATGASMALKEAGCILLEPYMYLEIISDEQYVHGI 60 (192)
Q Consensus 17 ~~~~~~~~a~~~~~~~al~~ag~~l~EPv~~v~I~vp~~~~g~V 60 (192)
..|.+|+.|+.+|++.++.+ ||+.++|+.+|.|++.+...+.+
T Consensus 55 ~l~~~~~~ai~~G~~~a~~~-Gpl~g~pv~~v~v~l~~~~~~~~ 97 (120)
T PF03764_consen 55 QLPKEFQDAIEEGFQSALSS-GPLCGYPVTDVKVTLTDGEYHEV 97 (120)
T ss_dssp SSGGGGHHHHHHHHHHHHCS-STTTSSEB-SEEEEEEEEEC-TT
T ss_pred cccHHHHHHHhhhhhheecc-cccCCCceEEEEEEEEEeeecCC
Confidence 46788999999999999976 99999999999999988766654
No 71
>cd01681 aeEF2_snRNP_like_IV This family represents domain IV of archaeal and eukaryotic elongation factor 2 (aeEF-2) and of an evolutionarily conserved U5 snRNP-specific protein. U5 snRNP is a GTP-binding factor closely related to the ribosomal translocase EF-2. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome. It has been shown that EF-2_IV domain mimics the shape of anticodon arm of the tRNA in the structurally homologous ternary complex of Phe-tRNA, EF-1 (another transcriptional elongation factor) and GTP analog. The tip portion of this domain is found in a position that overlaps the anticodon arm of the A-site tRNA, implying that EF-2 displaces the A-site tRNA to the P-site by physical interaction with the anticodon arm.
Probab=95.66 E-value=0.015 Score=45.37 Aligned_cols=44 Identities=23% Similarity=0.185 Sum_probs=36.9
Q ss_pred ccCCChHHHHHHHHHHHHHHHHHcCceeeeeeEEEEEEecCCchh
Q psy11837 14 LYSPRTYVILMCIATGASMALKEAGCILLEPYMYLEIISDEQYVH 58 (192)
Q Consensus 14 ~~~~~~~~~~~a~~~~~~~al~~ag~~l~EPv~~v~I~vp~~~~g 58 (192)
++...+..|+.++.+|++.|+++ ||+.+||+.++.+++.+...+
T Consensus 98 ~~~~~~~~~~~si~~Gf~~a~~~-GpL~~ePv~gv~v~l~~~~~~ 141 (177)
T cd01681 98 YDKSLLNEIKDSIVAGFQWATKE-GPLCEEPMRGVKFKLEDATLH 141 (177)
T ss_pred cccccHHHHHHHHHHHHHHHHhc-CCcCCCcccceEEEEEeeeec
Confidence 33445788999999999999986 999999999999999865443
No 72
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=95.11 E-value=0.036 Score=49.73 Aligned_cols=77 Identities=19% Similarity=0.349 Sum_probs=58.8
Q ss_pred CCeEEEEEeecchhhcchhhhhhhhccceEE-eeeeecceeecCchHHHHHHhcccCCCcceeccCchhhh-hhhhhhhh
Q psy11837 78 GSSKVIIAEAPLSELLGYCQRVRTLSSGRSH-FSMEFLCFKQVSSQNEAQAVRNITGFDPVIIAEAPLSEL-LGYCQRVR 155 (192)
Q Consensus 78 ~~~~~i~~~vP~~~~~~~~~~L~s~T~G~g~-~~~~~~~y~~~p~~~~~~i~~~~~~~~~~i~a~~P~~~~-~~y~~~lr 155 (192)
.|++...+.+|..++++++.-..+ .||. ..|.+.+ .....+.=++||+|+ ++|-.+|+
T Consensus 406 EP~v~~~ii~P~eylG~vm~Lcq~---kRG~~~~m~yl~-----------------~~rv~l~Y~lPl~Eiv~DFfDkLK 465 (603)
T COG0481 406 EPYVKATIITPQEYLGNVMELCQE---KRGIQIDMEYLD-----------------QNRVMLTYELPLAEIVFDFFDKLK 465 (603)
T ss_pred CceeEEEEeCcHHHHHHHHHHHHH---hcCceecceEec-----------------CceEEEEEecchHHHHHHHhHhhh
Confidence 368999999999999998877654 3444 1222211 124566778899996 57999999
Q ss_pred hhccCceeEEEEecccccC
Q psy11837 156 TLSSGRSHFSMEFLCFKQV 174 (192)
Q Consensus 156 s~T~G~g~~~~~~~~y~~v 174 (192)
|.|.|=++|..+|.+|++-
T Consensus 466 S~skGYAS~DYe~~~y~~~ 484 (603)
T COG0481 466 SISKGYASFDYEFIGYRES 484 (603)
T ss_pred ccccceeeecccccccccc
Confidence 9999999999999999763
No 73
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=94.50 E-value=0.014 Score=52.23 Aligned_cols=83 Identities=10% Similarity=0.127 Sum_probs=65.4
Q ss_pred CCeEEEEEeecchhhcchhhhhhhhccceEEeeeeecceeecCchHHHHHHhcccCCCcceeccCchhhhhhhhhhhhhh
Q psy11837 78 GSSKVIIAEAPLSELLGYCQRVRTLSSGRSHFSMEFLCFKQVSSQNEAQAVRNITGFDPVIIAEAPLSELLGYCQRVRTL 157 (192)
Q Consensus 78 ~~~~~i~~~vP~~~~~~~~~~L~s~T~G~g~~~~~~~~y~~~p~~~~~~i~~~~~~~~~~i~a~~P~~~~~~y~~~lrs~ 157 (192)
.|+-.+.+.+|..+.+.+...|.. .+|.+. -+....+++..+.-.+|.+-|.+|.+++-++
T Consensus 398 EP~E~v~iDv~ee~~G~Vie~lg~---RKgem~----------------~M~~~g~G~~Rlef~iPaRGLIGfrteFlt~ 458 (603)
T COG1217 398 EPFEEVTIDVPEEHQGAVIEKLGE---RKGEMK----------------DMAPDGKGRVRLEFVIPARGLIGFRTEFLTM 458 (603)
T ss_pred CcceeEEecCchhhhhHHHHHHhh---hhHhHh----------------hcccCCCCeEEEEEEccCcceeccchheeec
Confidence 357789999999999999988854 233310 0112235577888889999999999999999
Q ss_pred ccCceeEEEEecccccCCcHHH
Q psy11837 158 SSGRSHFSMEFLCFKQVSSQNE 179 (192)
Q Consensus 158 T~G~g~~~~~~~~y~~v~~~~~ 179 (192)
|+|.|-.+-.|++|+|..+++.
T Consensus 459 TrG~Gi~n~~F~~Y~p~~g~i~ 480 (603)
T COG1217 459 TRGTGIMNHSFDHYRPVKGEIG 480 (603)
T ss_pred cccceeeeeccccccccccccc
Confidence 9999999999999999987543
No 74
>cd01683 EF2_IV_snRNP EF-2_domain IV_snRNP domain is a part of 116kD U5-specific protein of the U5 small nucleoprotein (snRNP) particle, essential component of the spliceosome. The protein is structurally closely related to the eukaryotic translational elongation factor EF2. This domain has been also identified in 114kD U5-specific protein of Saccharomyces cerevisiae and may play an important role either in splicing process itself or the recycling of spliceosomal snRNP.
Probab=94.43 E-value=0.046 Score=42.88 Aligned_cols=38 Identities=18% Similarity=0.195 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHcCceeeeeeEEEEEEecCCchh
Q psy11837 20 YVILMCIATGASMALKEAGCILLEPYMYLEIISDEQYVH 58 (192)
Q Consensus 20 ~~~~~a~~~~~~~al~~ag~~l~EPv~~v~I~vp~~~~g 58 (192)
..|+.++..|++.|+++ ||+.+||+.+|.+++.+...+
T Consensus 104 ~~~~~sI~~Gf~~a~~~-GPL~gepv~gv~v~l~d~~~~ 141 (178)
T cd01683 104 NSVKESIVQGFQWAVRE-GPLCEEPIRNVKFKLLDADIA 141 (178)
T ss_pred HHHHHHHHHHHHHHHHc-CCcCCCeeecEEEEEEEeeec
Confidence 56999999999999986 999999999999999865444
No 75
>PRK13760 putative RNA-associated protein; Provisional
Probab=86.99 E-value=1.5 Score=35.87 Aligned_cols=66 Identities=14% Similarity=0.223 Sum_probs=49.6
Q ss_pred eeEEEEEEecCCchhhHHHHHhhcCceeeeeeec-CCeEEEEEeecchhhcchhhhhhhhccceEEee
Q psy11837 44 PYMYLEIISDEQYVHGILADLSRRRADIRSVEDR-GSSKVIIAEAPLSELLGYCQRVRTLSSGRSHFS 110 (192)
Q Consensus 44 Pv~~v~I~vp~~~~g~V~~~l~~rrg~i~~~~~~-~~~~~i~~~vP~~~~~~~~~~L~s~T~G~g~~~ 110 (192)
-=+.+.|.+|.++.+.+...|.. -|.+...+-. ++.+...+.+|.-..-.|...|+..|+|.|.+.
T Consensus 162 ~~~~~~v~iP~~~~~~~~~~l~~-~~~i~~eew~~dgs~~~v~~Ip~G~~~~~~~~~~~~tkG~~~~~ 228 (231)
T PRK13760 162 EKARIAVKIPPEYAGKAYGELRK-FGEIKKEEWQSDGSWIAVLEIPAGLQNEFYDKLNKLTKGEAETK 228 (231)
T ss_pred eeEEEEEEECHHHHHHHHHHHHh-hcccchhhccCCCcEEEEEEECCccHHHHHHHHHHhcCCcEEEE
Confidence 33568889999999999888887 5555433322 335667789999888899999999999999864
No 76
>PF08029 HisG_C: HisG, C-terminal domain; InterPro: IPR013115 ATP phosphoribosyltransferase (2.4.2.17 from EC) is the enzyme that catalyzes the first step in the biosynthesis of histidine in bacteria, fungi and plants as shown below. It is a member of the larger phosphoribosyltransferase superfamily of enzymes which catalyse the condensation of 5-phospho-alpha-D-ribose 1-diphosphate with nitrogenous bases in the presence of divalent metal ions []. ATP + 5-phospho-alpha-D-ribose 1-diphosphate = 1-(5-phospho-D-ribosyl)-ATP + diphosphate Histidine biosynthesis is an energetically expensive process and ATP phosphoribosyltransferase activity is subject to control at several levels. Transcriptional regulation is based primarily on nutrient conditions and determines the amount of enzyme present in the cell, while feedback inihibition rapidly modulates activity in response to cellular conditions. The enzyme has been shown to be inhibited by 1-(5-phospho-D-ribosyl)-ATP, histidine, ppGpp (a signal associated with adverse environmental conditions) and ADP and AMP (which reflect the overall energy status of the cell). As this pathway of histidine biosynthesis is present only in prokayrotes, plants and fungi, this enzyme is a promising target for the development of novel antimicrobial compounds and herbicides. This entry represents the C-terminal portion of ATP phosphoribosyltransferase. The enzyme itself exists in equilibrium between an active dimeric form, an inactive hexameric form and higher aggregates [, ]. Interconversion between the various forms is largely reversible and is influenced by the binding of the natural substrates and inhibitors of the enzyme. This domain is not directly involved in catalysis but appears to be responsible for the formation of hexamers induced by the binding of inhibitors to the enzyme, thus regulating activity.; GO: 0000287 magnesium ion binding, 0003879 ATP phosphoribosyltransferase activity, 0000105 histidine biosynthetic process, 0005737 cytoplasm; PDB: 1Q1K_A 1H3D_A 2VD3_B 1NH7_A 1NH8_A.
Probab=84.21 E-value=8.4 Score=25.80 Aligned_cols=63 Identities=8% Similarity=0.181 Sum_probs=48.5
Q ss_pred eEEEEEEecCCchhhHHHHHhhcCc-eeeeeeecCCeEEEEEeecchhhcchhhhhhhhccceEEe
Q psy11837 45 YMYLEIISDEQYVHGILADLSRRRA-DIRSVEDRGSSKVIIAEAPLSELLGYCQRVRTLSSGRSHF 109 (192)
Q Consensus 45 v~~v~I~vp~~~~g~V~~~l~~rrg-~i~~~~~~~~~~~i~~~vP~~~~~~~~~~L~s~T~G~g~~ 109 (192)
+..+...+|.+.+..|.+.+-..++ +|..+ ..++|+.|++-||.+.+.+...+|+.. ++++.+
T Consensus 5 ~~~l~~Nvp~~~l~~v~~ilPg~~~PTVs~L-~~~~w~AV~~vV~~~~~~~~~~~Lk~~-GA~~Il 68 (75)
T PF08029_consen 5 YVLLMMNVPRESLEEVIKILPGLKSPTVSPL-ADEDWVAVHAVVPEKQVWDLMDKLKAA-GASDIL 68 (75)
T ss_dssp EEEEEEEEECCCHHHHHHHS--SSS-EEEE--SSTTEEEEEEEEECCCHHHHHHHHHCT-T-EEEE
T ss_pred ceEEEEeCCHHHHHHHHHhCCCCCCCceeec-CCCCEEEEEEEecHHHHHHHHHHHHHc-CCCEEE
Confidence 4568889999999999998887776 55555 446799999999999999999999874 555554
No 77
>COG1739 Uncharacterized conserved protein [Function unknown]
Probab=79.30 E-value=9.2 Score=30.62 Aligned_cols=89 Identities=12% Similarity=0.075 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHcCceeeeeeEEEEEEecCCchhhHHHHHhhcCceeeeeeecCCeEEEEEeecchhhcchhhhhhh
Q psy11837 22 ILMCIATGASMALKEAGCILLEPYMYLEIISDEQYVHGILADLSRRRADIRSVEDRGSSKVIIAEAPLSELLGYCQRVRT 101 (192)
Q Consensus 22 ~~~a~~~~~~~al~~ag~~l~EPv~~v~I~vp~~~~g~V~~~l~~rrg~i~~~~~~~~~~~i~~~vP~~~~~~~~~~L~s 101 (192)
++.|=..++..+++.++..-..+...+.+.++...++.+-..+......+.+....+..+.+.+.++....-.|...|..
T Consensus 112 LvrAY~~~v~~~l~~~~~~e~~~~~~~~~~~~y~~l~~l~~~l~~~~~~i~~~~~~~~~v~~~v~~~~~~~~~~~~~~~~ 191 (203)
T COG1739 112 LVRAYANAVKSALEAAEAIEKKEAKANHVGCAYRILGLLERLLKQNDDDVEEARYSGGSVLLTVRFRHIVIEAVSRLLKG 191 (203)
T ss_pred cHHHHHHHHHHHHHHhhcchhhhhhheeeccchhhhHHHHHHHHhccceEEEeeecCCeEEEEEEechhhHHHHHHHHhh
Confidence 55566666677777777777777777888888888888877777777777766666666899999999999999999999
Q ss_pred hccceEEee
Q psy11837 102 LSSGRSHFS 110 (192)
Q Consensus 102 ~T~G~g~~~ 110 (192)
.+.|+..+.
T Consensus 192 ~~~g~~~~~ 200 (203)
T COG1739 192 NHIGPDRFK 200 (203)
T ss_pred ccCCceEEe
Confidence 999987753
No 78
>TIGR00291 RNA_SBDS rRNA metabolism protein, SBDS family. This protein family, possibly universal in both archaea and eukaryotes, appears to be involved in (ribosomal) RNA metabolism. Mutations in the human ortholog are associated with Shwachman-Bodian-Diamond syndrome.
Probab=77.32 E-value=4.9 Score=32.91 Aligned_cols=65 Identities=14% Similarity=0.088 Sum_probs=47.5
Q ss_pred eeEEEEEEecCCchhhHHHHHhhcCceeeeeeec-CCeEEEEEeecchhhcchhhhhhhhccceEEe
Q psy11837 44 PYMYLEIISDEQYVHGILADLSRRRADIRSVEDR-GSSKVIIAEAPLSELLGYCQRVRTLSSGRSHF 109 (192)
Q Consensus 44 Pv~~v~I~vp~~~~g~V~~~l~~rrg~i~~~~~~-~~~~~i~~~vP~~~~~~~~~~L~s~T~G~g~~ 109 (192)
--+.+.|.+|.++.+.+...|..... +..-+.. ++.+...+.+|......|...|...|+|.+..
T Consensus 162 a~m~i~v~ip~~~~~~~~~~l~~~~~-i~~eew~~dgs~~~v~~I~pg~~~~~~~~l~~~tkG~~~~ 227 (231)
T TIGR00291 162 EKMKVAIKIPPERAGEAIEAISNFGA-VTPEEWQEDGSWICVGEIPSGNYRDLMTLLDKKTKGNVLT 227 (231)
T ss_pred eeEEEEEEeCHHHHHHHHHHHHHhcc-cchhhccCCCcEEEEEEECCccHHHHHHHHHhhcCCeeEE
Confidence 34568889999998888887776544 4322222 33466677899998889999999999998763
No 79
>PF09377 SBDS_C: SBDS protein C-terminal domain; InterPro: IPR018978 This entry represents the C-terminal domain of proteins that are highly conserved in species ranging from archaea to vertebrates and plants []. The family contains several Shwachman-Bodian-Diamond syndrome (SBDS, OMIM 260400) proteins from both mouse and humans. Shwachman-Diamond syndrome is an autosomal recessive disorder with clinical features that include pancreatic exocrine insufficiency, haematological dysfunction and skeletal abnormalities. It is characterised by bone marrow failure and leukemia predisposition. Members of this family play a role in RNA metabolism [, ]. In yeast Sdo1 is involved in the biogenesis of the 60S ribosomal subunit and translational activation of ribosomes. Together with the EF-2-like GTPase RIA1 (EfI1), it triggers the GTP-dependent release of TIF6 from 60S pre-ribosomes in the cytoplasm, thereby activating ribosomes for translation competence by allowing 80S ribosome assembly and facilitating TIF6 recycling to the nucleus, where it is required for 60S rRNA processing and nuclear export. This data links defective late 60S subunit maturation to an inherited bone marrow failure syndrome associated with leukemia predisposition []. A number of uncharacterised hydrophilic proteins of about 30 kDa share regions of similarity. These include, Mouse protein 22A3. Saccharomyces cerevisiae chromosome XII hypothetical protein YLR022c. Caenorhabditis elegans hypothetical protein W06E11.4. Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ0592. ; GO: 0042254 ribosome biogenesis; PDB: 2KDO_A 2L9N_A 2WBM_B 1P9Q_C 1T95_A.
Probab=73.16 E-value=19 Score=26.48 Aligned_cols=57 Identities=16% Similarity=0.095 Sum_probs=40.3
Q ss_pred eeeEEEEEEecCCchhhHHHHHhhcCceeeeeeecCCeEEEEEeecchhhcchhhhh
Q psy11837 43 EPYMYLEIISDEQYVHGILADLSRRRADIRSVEDRGSSKVIIAEAPLSELLGYCQRV 99 (192)
Q Consensus 43 EPv~~v~I~vp~~~~g~V~~~l~~rrg~i~~~~~~~~~~~i~~~vP~~~~~~~~~~L 99 (192)
.--|.+.|++|.++.+.+...+....+.+.+-...++.+.+.+.+|....-.+...+
T Consensus 66 ra~m~l~v~ip~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~i~pg~~r~l~~~v 122 (125)
T PF09377_consen 66 RAKMRLRVTIPSKYAKKVKDKLLKLGAKIEEEEQNDGSWEMVFLIDPGLYRELDELV 122 (125)
T ss_dssp EEEEEEEEEEBCCCHHHHHHHHHHHSEEEEEEEETTSCEEEEEEEEGGGHHHHHHHH
T ss_pred eeeEEEEEEeCHHHHHHHHHHHHHhhcEeeecccCCCeEEEEEEECCcchHHHHHHH
Confidence 335678899999999988877777766665555556677788888877654544443
No 80
>COG1500 Predicted exosome subunit [Translation, ribosomal structure and biogenesis]
Probab=72.21 E-value=14 Score=30.16 Aligned_cols=78 Identities=13% Similarity=0.105 Sum_probs=52.6
Q ss_pred HHHHHHcCceeeeeeEE--EEEEecCCchhhHHHHHhhcCceeeeeeecCCeEEEEEeecchhhcchhhhhhhhccceEE
Q psy11837 31 SMALKEAGCILLEPYMY--LEIISDEQYVHGILADLSRRRADIRSVEDRGSSKVIIAEAPLSELLGYCQRVRTLSSGRSH 108 (192)
Q Consensus 31 ~~al~~ag~~l~EPv~~--v~I~vp~~~~g~V~~~l~~rrg~i~~~~~~~~~~~i~~~vP~~~~~~~~~~L~s~T~G~g~ 108 (192)
.++++.-.+.+-=|+.. +.|.+|.++.+.+...+.+.+....+.-..++.+.-.+.+|.-.-.+|...|...|+|.+.
T Consensus 147 ~evlK~l~~i~pIrfera~vaVkip~e~~~k~~~~l~k~g~i~~eew~~dgsw~~~~~ipaG~q~e~~~~l~~~~kG~~q 226 (234)
T COG1500 147 QEVLKALRPIIPIRFERAKVAVKIPVEYAGKAYGLLRKFGEIKKEEWQEDGSWICVLEIPAGNQDEFYELLNELTKGEVQ 226 (234)
T ss_pred HHHHHHHhhcCCceeeeeeEEEEecccccchHHHHHHHhhhhhhhhcccCCceEEEEeeCcchHHHHHHHHHHhcCCcce
Confidence 44444433333335555 7888999999999887776554433333333445668889988888899999888888776
No 81
>TIGR03455 HisG_C-term ATP phosphoribosyltransferase, C-terminal domain. This domain corresponds to the C-terminal third of the HisG protein. It is absent in many lineages.
Probab=53.50 E-value=35 Score=24.08 Aligned_cols=63 Identities=8% Similarity=0.027 Sum_probs=49.1
Q ss_pred eeEEEEEEecCCchhhHHHHHhhcCc-eeeeeeecCCeEEEEEeecchhhcchhhhhhhhccceEE
Q psy11837 44 PYMYLEIISDEQYVHGILADLSRRRA-DIRSVEDRGSSKVIIAEAPLSELLGYCQRVRTLSSGRSH 108 (192)
Q Consensus 44 Pv~~v~I~vp~~~~g~V~~~l~~rrg-~i~~~~~~~~~~~i~~~vP~~~~~~~~~~L~s~T~G~g~ 108 (192)
-+..|...+|.+.+..+...+...+| +|..+. .++++-|.+.||...+.++...|+.. ++++.
T Consensus 28 ~~~~v~~Nvp~~~l~~v~~ilPg~~~PTVs~l~-~~~w~AV~~vv~~~~v~~~~~~Lk~~-GA~~I 91 (100)
T TIGR03455 28 GKVLLMMNVPRDNLDEVRALLPGLEGPTVSPLA-DEGWVAVHAVVDEKVVNELIDKLKAA-GARDI 91 (100)
T ss_pred heeEEEEeCChhhHHHHHHhcCCCCCCCcCcCC-CCCeEEEEEEEcHHHHHHHHHHHHHc-CCCeE
Confidence 45567788999999888888887776 555554 35799999999999999999999874 44444
No 82
>PRK13760 putative RNA-associated protein; Provisional
Probab=52.92 E-value=27 Score=28.63 Aligned_cols=67 Identities=12% Similarity=0.132 Sum_probs=45.9
Q ss_pred eEEEEEeecchhhcchhhhhhhhccceEEeeeeecceeecCchHHHHHHhcccCCCcceeccCchhhhhhhhhhhhhhcc
Q psy11837 80 SKVIIAEAPLSELLGYCQRVRTLSSGRSHFSMEFLCFKQVSSQNEAQAVRNITGFDPVIIAEAPLSELLGYCQRVRTLSS 159 (192)
Q Consensus 80 ~~~i~~~vP~~~~~~~~~~L~s~T~G~g~~~~~~~~y~~~p~~~~~~i~~~~~~~~~~i~a~~P~~~~~~y~~~lrs~T~ 159 (192)
.+.+.+.+|..+.+...+.|... |... -..|+ .++.-....++|-..-..+...|..+|+
T Consensus 163 ~~~~~v~iP~~~~~~~~~~l~~~--~~i~----~eew~--------------~dgs~~~v~~Ip~G~~~~~~~~~~~~tk 222 (231)
T PRK13760 163 KARIAVKIPPEYAGKAYGELRKF--GEIK----KEEWQ--------------SDGSWIAVLEIPAGLQNEFYDKLNKLTK 222 (231)
T ss_pred eEEEEEEECHHHHHHHHHHHHhh--cccc----hhhcc--------------CCCcEEEEEEECCccHHHHHHHHHHhcC
Confidence 57899999999988888888652 2111 01111 1122344567888888889999999999
Q ss_pred CceeEEE
Q psy11837 160 GRSHFSM 166 (192)
Q Consensus 160 G~g~~~~ 166 (192)
|.|...+
T Consensus 223 G~~~~~v 229 (231)
T PRK13760 223 GEAETKV 229 (231)
T ss_pred CcEEEEE
Confidence 9998753
No 83
>PF10369 ALS_ss_C: Small subunit of acetolactate synthase; InterPro: IPR019455 This entry represents the C-terminal domain of the small subunit of acetolactate synthase (the N-terminal domain being an ACT domain). Acetolactate synthase is a tetrameric enzyme, composed of two large and two small subunits, which catalyses the first step in branched-chain amino acid biosynthesis. This reaction is sensitive to certain herbicides []. ; PDB: 2F1F_B 2FGC_A 2PC6_A.
Probab=51.15 E-value=54 Score=21.65 Aligned_cols=55 Identities=15% Similarity=0.132 Sum_probs=41.3
Q ss_pred eEEEEEEecCCchhhHHHHHhhcCceeeeeeecCCeEEEEEeecchhhcchhhhhhh
Q psy11837 45 YMYLEIISDEQYVHGILADLSRRRADIRSVEDRGSSKVIIAEAPLSELLGYCQRVRT 101 (192)
Q Consensus 45 v~~v~I~vp~~~~g~V~~~l~~rrg~i~~~~~~~~~~~i~~~vP~~~~~~~~~~L~s 101 (192)
++-++|.++.+....+.+.+...+|.+.++... .+.+++.-..+.+-+|...|+.
T Consensus 4 l~LiKV~~~~~~r~ei~~l~~~f~a~ivd~~~~--~~iie~tG~~~kid~fi~~l~~ 58 (75)
T PF10369_consen 4 LALIKVKATPENRSEILQLAEIFRARIVDVSPD--SIIIELTGTPEKIDAFIKLLKP 58 (75)
T ss_dssp EEEEEEE-SCHHHHHHHHHHHHTT-EEEEEETT--EEEEEEEE-HHHHHHHHHHSTG
T ss_pred EEEEEEECCccCHHHHHHHHHHhCCEEEEECCC--EEEEEEcCCHHHHHHHHHHhhh
Confidence 344677776667778888888899999887654 7899999999999888888865
No 84
>KOG3333|consensus
Probab=38.00 E-value=26 Score=26.96 Aligned_cols=42 Identities=26% Similarity=0.303 Sum_probs=20.9
Q ss_pred ccccccCCCCcccCCChHHHHHHHHHHHHHHHHHcCceeeeee
Q psy11837 3 RCHQHGSQGGRLYSPRTYVILMCIATGASMALKEAGCILLEPY 45 (192)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~al~~ag~~l~EPv 45 (192)
||-|.|-...-+ .|++-+.-..-.+-+..||.+.|..+.||-
T Consensus 117 RCLqsGI~fm~~-~~t~ea~~~s~~q~l~~a~~e~Gv~lkEP~ 158 (188)
T KOG3333|consen 117 RCLQSGINFMVY-QPTPEAAASSSMQRLQSAMTEGGVVLKEPQ 158 (188)
T ss_pred HHHHhCcceecc-CCChhhccchHHHHHHHHHHhCCeeecCcc
Confidence 455555444433 344444333333445566666666666653
No 85
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=33.80 E-value=1.3e+02 Score=19.28 Aligned_cols=58 Identities=16% Similarity=0.307 Sum_probs=37.6
Q ss_pred EEEEecC--CchhhHHHHHhhcCceeeeeeec--C------C--eEEEEEeecch-hhcchhhhhhhhccc
Q psy11837 48 LEIISDE--QYVHGILADLSRRRADIRSVEDR--G------S--SKVIIAEAPLS-ELLGYCQRVRTLSSG 105 (192)
Q Consensus 48 v~I~vp~--~~~g~V~~~l~~rrg~i~~~~~~--~------~--~~~i~~~vP~~-~~~~~~~~L~s~T~G 105 (192)
+.|..++ +-+..+.+.|+.++..|.++... + + .+.+++.+|.. ....+..+|..+...
T Consensus 2 l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~l~~~l~~l~~~ 72 (81)
T cd04869 2 VEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPAGTDLDALREELEELCDD 72 (81)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 4566665 34456667788899988887653 1 2 45678888864 356777777665443
No 86
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=31.00 E-value=1.5e+02 Score=22.77 Aligned_cols=55 Identities=16% Similarity=0.124 Sum_probs=42.9
Q ss_pred eEEEEEEecCCchhhHHHHHhhcCceeeeeeecCCeEEEEEeecchhhcchhhhhhh
Q psy11837 45 YMYLEIISDEQYVHGILADLSRRRADIRSVEDRGSSKVIIAEAPLSELLGYCQRVRT 101 (192)
Q Consensus 45 v~~v~I~vp~~~~g~V~~~l~~rrg~i~~~~~~~~~~~i~~~vP~~~~~~~~~~L~s 101 (192)
+.-++|.++....+.+.+.....+|.+.++... .+.++++-....+-+|...|+.
T Consensus 86 l~LiKv~~~~~~r~~i~~i~~~f~a~ivdv~~~--~~~iE~tG~~~ki~~~~~~l~~ 140 (161)
T PRK11895 86 LALVKVRASGENRAEILRLADIFRAKIVDVTPE--SLTIEVTGDSDKIDAFIDLLRP 140 (161)
T ss_pred EEEEEEECCcccHHHHHHHHHHhCCEEEEecCC--EEEEEEeCCHHHHHHHHHHhhh
Confidence 444667776666677878788899999888653 7889999999999888888855
No 87
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=29.21 E-value=1.7e+02 Score=22.38 Aligned_cols=56 Identities=11% Similarity=0.079 Sum_probs=43.5
Q ss_pred eeEEEEEEecCCchhhHHHHHhhcCceeeeeeecCCeEEEEEeecchhhcchhhhhhh
Q psy11837 44 PYMYLEIISDEQYVHGILADLSRRRADIRSVEDRGSSKVIIAEAPLSELLGYCQRVRT 101 (192)
Q Consensus 44 Pv~~v~I~vp~~~~g~V~~~l~~rrg~i~~~~~~~~~~~i~~~vP~~~~~~~~~~L~s 101 (192)
-++-++|.++.+....+.+.....+|.+.++... .+.++++-....+-+|...|+.
T Consensus 84 El~LiKv~~~~~~r~~i~~i~~~f~a~ivdv~~~--~~~ie~tG~~~ki~~~~~~l~~ 139 (157)
T TIGR00119 84 ELCLVKVSAPGEGRDEIIRLTNIFRGRIVDVSPD--SYTVEVTGDSDKIDAFLELLRP 139 (157)
T ss_pred EEEEEEEECCccCHHHHHHHHHHhCCEEEEecCC--EEEEEEcCCHHHHHHHHHHhhh
Confidence 3444667777666677877778889999888553 7889999999999888888865
No 88
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=28.00 E-value=2.1e+02 Score=23.32 Aligned_cols=41 Identities=12% Similarity=0.141 Sum_probs=31.5
Q ss_pred HHHhhcCceeeeeeec-------CCeEEEEEeecchhhcchhhhhhhh
Q psy11837 62 ADLSRRRADIRSVEDR-------GSSKVIIAEAPLSELLGYCQRVRTL 102 (192)
Q Consensus 62 ~~l~~rrg~i~~~~~~-------~~~~~i~~~vP~~~~~~~~~~L~s~ 102 (192)
+.+.+.+|.+...... .....++++||.+.+-.|...|.+.
T Consensus 70 ~~~~~~gG~i~~~~~~~~~~~~~~~~~~ltiRVP~~~~~~~l~~l~~~ 117 (262)
T PF14257_consen 70 NLVESYGGYIESSSSSSSGGSDDERSASLTIRVPADKFDSFLDELSEL 117 (262)
T ss_pred HHHHHcCCEEEEEeeecccCCCCcceEEEEEEECHHHHHHHHHHHhcc
Confidence 4445678888766553 2477899999999999999999853
No 89
>cd03485 MutL_Trans_hPMS_1_like MutL_Trans_hPMS1_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM1 (hPSM1) and yeast MLH2. hPSM1 and yMLH2 are members of the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. PMS1 forms a heterodimer with MLH1. The MLH1-PMS1 complex functions in meiosis. Loss of yMLH2 results in a small but significant decrease in spore viability and a significant increase in gene conversion frequencies. A role for hMLH1-hPMS1 in DNA mismatch repair has not been established. Mutation in hMLH1 accounts for a large fraction of Lynch syndrome (HNPCC) families, however there is no convincing evidence to support hPMS1 having a role in HNPCC predisposition.
Probab=26.63 E-value=1.3e+02 Score=21.83 Aligned_cols=52 Identities=17% Similarity=0.051 Sum_probs=35.9
Q ss_pred ccccccCCCCcccCCChHHHHHHHHHHHHHHHHHcCceeeeeeEEEEEEecCCc
Q psy11837 3 RCHQHGSQGGRLYSPRTYVILMCIATGASMALKEAGCILLEPYMYLEIISDEQY 56 (192)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~al~~ag~~l~EPv~~v~I~vp~~~ 56 (192)
+.+|+=.++|+.-. .+..+..|+.++....+.+ .+....|+.-+.|.+|.+.
T Consensus 48 ~~~q~~fVN~R~v~-~~~~l~k~i~~~y~~~~~~-~~~~~~P~~~L~i~~~~~~ 99 (132)
T cd03485 48 SDGKFISVNSRPVS-LGKDIGKLLRQYYSSAYRK-SSLRRYPVFFLNILCPPGL 99 (132)
T ss_pred CCcEEEEECCeecc-cchHHHHHHHHHHHHHhcc-ccccCCCEEEEEEEcCCCc
Confidence 34555556666633 2366777777777776644 4678899999999998765
No 90
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=24.97 E-value=2.1e+02 Score=18.89 Aligned_cols=59 Identities=10% Similarity=0.279 Sum_probs=38.4
Q ss_pred EEEEEecC--CchhhHHHHHhhcCceeeeeeec--CC--eEEEEEeecc--hhhcchhhhhhhhccc
Q psy11837 47 YLEIISDE--QYVHGILADLSRRRADIRSVEDR--GS--SKVIIAEAPL--SELLGYCQRVRTLSSG 105 (192)
Q Consensus 47 ~v~I~vp~--~~~g~V~~~l~~rrg~i~~~~~~--~~--~~~i~~~vP~--~~~~~~~~~L~s~T~G 105 (192)
-+.+..|| +-+..|.+.++.+++.|.++... ++ .+.+.+.+|. .....+..+|..+...
T Consensus 3 vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~~~~~~~~~L~~~l~~l~~~ 69 (88)
T cd04872 3 VITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDISESNLDFAELQEELEELGKE 69 (88)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 35666665 34566678888999999887764 33 4566777785 2355666777665433
No 91
>PRK00194 hypothetical protein; Validated
Probab=24.68 E-value=1.9e+02 Score=19.08 Aligned_cols=59 Identities=8% Similarity=0.250 Sum_probs=36.3
Q ss_pred EEEEEecC--CchhhHHHHHhhcCceeeeeeec--CCe--EEEEEeecc--hhhcchhhhhhhhccc
Q psy11837 47 YLEIISDE--QYVHGILADLSRRRADIRSVEDR--GSS--KVIIAEAPL--SELLGYCQRVRTLSSG 105 (192)
Q Consensus 47 ~v~I~vp~--~~~g~V~~~l~~rrg~i~~~~~~--~~~--~~i~~~vP~--~~~~~~~~~L~s~T~G 105 (192)
-+.|..++ +-+..|.+.|+.+.+.|.++... ++. +.+.+.+|. .....+..+|......
T Consensus 5 ~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~l~~l~~~ 71 (90)
T PRK00194 5 IITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDISESKKDFAELKEELEELGKE 71 (90)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 45566664 34566667888999999888764 333 444667775 2244556666655433
No 92
>TIGR00257 IMPACT_YIGZ uncharacterized protein, YigZ family. This uncharacterized protein family includes YigZ, which has been crystallized, from E. coli. YigZ is homologous to the protein product of the mouse IMPACT gene. Crystallography shows a two-domain stucture, and the C-terminal domain is suggested to bind nucleic acids. The function is unknown. Note that the ortholog from E. coli was shown fused to the pepQ gene in GenBank entry X54687. This caused occasional misidentification of this protein as pepQ; this family is found in a number of species that lack pepQ.
Probab=24.43 E-value=3.4e+02 Score=21.71 Aligned_cols=65 Identities=11% Similarity=0.199 Sum_probs=45.4
Q ss_pred eEEEEEeecchhhcchhhhhhhhccceEEeeeeecceeecCchHHHHHHhcccCCCcceeccCchhhhhhhhhhhhhhcc
Q psy11837 80 SKVIIAEAPLSELLGYCQRVRTLSSGRSHFSMEFLCFKQVSSQNEAQAVRNITGFDPVIIAEAPLSELLGYCQRVRTLSS 159 (192)
Q Consensus 80 ~~~i~~~vP~~~~~~~~~~L~s~T~G~g~~~~~~~~y~~~p~~~~~~i~~~~~~~~~~i~a~~P~~~~~~y~~~lrs~T~ 159 (192)
...+++.+|-+.+..+...|+.. +... .+.+| .....+...+|......+...|..+|+
T Consensus 136 ~~~~~~~~~y~~~~~v~~~l~~~-~~~i-~~~~y-------------------~~~V~~~~~v~~~~~~~~~~~l~~~t~ 194 (204)
T TIGR00257 136 LEILSLHCDYKQLDALERELKKF-QLEI-IKSNF-------------------SNNVVLVEISGTKENLAFSEQLTEISL 194 (204)
T ss_pred EEEEEEEechhHHHHHHHHHHHC-CCEE-EeeEe-------------------cCCEEEEEEECHHHHHHHHHHHHHHhC
Confidence 45677888888887777777553 1111 11111 234677888899999999999999999
Q ss_pred CceeEE
Q psy11837 160 GRSHFS 165 (192)
Q Consensus 160 G~g~~~ 165 (192)
|+..+.
T Consensus 195 g~~~~~ 200 (204)
T TIGR00257 195 GQLILK 200 (204)
T ss_pred CeEEEE
Confidence 998764
No 93
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=24.17 E-value=2.4e+02 Score=21.99 Aligned_cols=60 Identities=15% Similarity=0.136 Sum_probs=46.6
Q ss_pred eeeeeeEEEEEEecCCchhhHHHHHhhcCceeeeeeecCCeEEEEEeecchhhcchhhhhhh
Q psy11837 40 ILLEPYMYLEIISDEQYVHGILADLSRRRADIRSVEDRGSSKVIIAEAPLSELLGYCQRVRT 101 (192)
Q Consensus 40 ~l~EPv~~v~I~vp~~~~g~V~~~l~~rrg~i~~~~~~~~~~~i~~~vP~~~~~~~~~~L~s 101 (192)
.+.--++-++|.++...-+.+.......+|.|.++... .+.|+++-..+.+-.|...|+.
T Consensus 81 ~v~rEl~LiKv~~~~~~r~ei~~~~~~f~a~ivdv~~~--~~~ie~tG~~~ki~a~~~~l~~ 140 (174)
T CHL00100 81 CVERELMLIKINVNSQTRPEILEIAQIFRAKVVDLSEE--SLILEVTGDPGKIVAIEQLLEK 140 (174)
T ss_pred ceeeEEEEEEEecCCcCHHHHHHHHHHhCCEEEEecCC--EEEEEEcCCHHHHHHHHHHhhh
Confidence 34444556788887777778888778889999888764 6889999999999888888865
No 94
>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants). It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].
Probab=22.87 E-value=1.5e+02 Score=16.92 Aligned_cols=25 Identities=8% Similarity=0.222 Sum_probs=18.6
Q ss_pred CceeEEEEecc----cccCCcHHHHHHHH
Q psy11837 160 GRSHFSMEFLC----FKQVSSQNEAQAVR 184 (192)
Q Consensus 160 G~g~~~~~~~~----y~~v~~~~~~~~~~ 184 (192)
+...+|+-|.| |+-||++.++.|+.
T Consensus 4 ~~~qLTIfY~G~V~Vfd~v~~~Ka~~im~ 32 (36)
T PF06200_consen 4 ETAQLTIFYGGQVCVFDDVPPDKAQEIML 32 (36)
T ss_pred CCCcEEEEECCEEEEeCCCCHHHHHHHHH
Confidence 34556776755 78899999998875
No 95
>PF08203 RNA_polI_A14: Yeast RNA polymerase I subunit RPA14; InterPro: IPR013239 Saccharomyces cerevisiae RNA polymerase I (Pol I) is a complex consisting of 14 subunits. Subunit RPA14 forms part of a Pol I subcomplex consisting of RPA14 and and RPA43. The RPA14 and RPA43 heterodimer is proposed to play a role in the recruitment of Pol I to the promoter []. ; PDB: 2RF4_F.
Probab=22.29 E-value=43 Score=22.56 Aligned_cols=16 Identities=19% Similarity=0.495 Sum_probs=10.9
Q ss_pred HHHHHHHHHhCCCCCC
Q psy11837 177 QNEAQAVRNITGFDPV 192 (192)
Q Consensus 177 ~~~~~~~~~~~~~~~~ 192 (192)
.+.++|.++.||+||.
T Consensus 59 SQLKRiQRdlrGLPP~ 74 (76)
T PF08203_consen 59 SQLKRIQRDLRGLPPL 74 (76)
T ss_dssp HHHHHHHHHHHHS---
T ss_pred HHHHHHHHhhCCCCCC
Confidence 5678888999999984
No 96
>PRK10678 moaE molybdopterin guanine dinucleotide biosynthesis protein MoaE; Provisional
Probab=20.69 E-value=53 Score=25.02 Aligned_cols=39 Identities=15% Similarity=0.250 Sum_probs=31.2
Q ss_pred hhhhhhhhhhccCceeEEEEecccccCCcHHHHHHHHHh
Q psy11837 148 LGYCQRVRTLSSGRSHFSMEFLCFKQVSSQNEAQAVRNI 186 (192)
Q Consensus 148 ~~y~~~lrs~T~G~g~~~~~~~~y~~v~~~~~~~~~~~~ 186 (192)
..|.-..|..+.|+..-.++|..|+++-....++|.++.
T Consensus 32 v~F~G~VR~~~~g~~V~~L~yeay~~ma~k~l~~I~~ea 70 (150)
T PRK10678 32 VTFTGKVRNHNLGDSVKALTLEHYPGMTEKALAEIVDEA 70 (150)
T ss_pred EEEEEEECCCCCCCceeEEEEEecCcHHHHHHHHHHHHH
Confidence 345555677888999999999999999988888887553
No 97
>PLN02390 molybdopterin synthase catalytic subunit
Probab=20.41 E-value=43 Score=24.13 Aligned_cols=37 Identities=5% Similarity=0.228 Sum_probs=29.5
Q ss_pred hhhhhhhhccCceeEEEEecccccCCcHHHHHHHHHh
Q psy11837 150 YCQRVRTLSSGRSHFSMEFLCFKQVSSQNEAQAVRNI 186 (192)
Q Consensus 150 y~~~lrs~T~G~g~~~~~~~~y~~v~~~~~~~~~~~~ 186 (192)
|.-..|..+.|+..-.++|..|+|+-....++|.++.
T Consensus 10 F~G~VR~~~~g~~V~~L~yeay~~ma~~~l~~I~~e~ 46 (111)
T PLN02390 10 FSGTTRDTFEGKTVLELRYEAYVPMALRELRKICDEA 46 (111)
T ss_pred EEEEECCCCCCCcEeeEEEEEcHHHHHHHHHHHHHHH
Confidence 4444667788999999999999999888888887653
No 98
>PF02566 OsmC: OsmC-like protein; InterPro: IPR003718 Osmotically inducible protein C (OsmC) is a stress-induced protein found in Escherichia coli. The transcription of the osmC gene of E. coli is regulated as a function of the phase of growth and is induced during the late exponential phase when the growth rate slows before entry into stationary phase. The transcription is initiated by two overlapping promoters, osmCp1 and osmCp2 []. An organic hydroperoxide detoxification protein (OHR) from Xanthomonas campestris pv. phaseoli is highly induced by organic hydroperoxides, weakly induced by H2O2, and not induced at all by a superoxide generator. Ohr may be a new type of organic hydroperoxide detoxification protein [, ].; GO: 0006950 response to stress; PDB: 2D7V_A 2BJO_A 1USP_A 2PN2_A 2QL8_A 1N2F_A 1UKK_A 1VLA_D 3CJE_A 2ONF_B ....
Probab=20.20 E-value=1.6e+02 Score=19.66 Aligned_cols=42 Identities=14% Similarity=0.052 Sum_probs=21.6
Q ss_pred cccCCChHHHHHHHHHHH-HHHHHHcCceeeeeeEEEEEEecC
Q psy11837 13 RLYSPRTYVILMCIATGA-SMALKEAGCILLEPYMYLEIISDE 54 (192)
Q Consensus 13 ~~~~~~~~~~~~a~~~~~-~~al~~ag~~l~EPv~~v~I~vp~ 54 (192)
....|.|.++..++..+| ...+...-...+.++.+++|.+..
T Consensus 2 ~~~~~~P~elllaala~C~~~~~~~~a~~~gi~~~~~~v~v~~ 44 (100)
T PF02566_consen 2 DGEGPNPEELLLAALASCFAMTLRMVAEKRGIDLEDLEVEVEG 44 (100)
T ss_dssp CSSSB-HHHHHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCcceEEEEEEE
Confidence 344678888555444444 333333222334577777777764
Done!