Query psy11837
Match_columns 192
No_of_seqs 195 out of 1997
Neff 7.9
Searched_HMMs 29240
Date Fri Aug 16 20:13:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11837.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11837hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n0u_A EF-2, elongation factor 99.9 6.6E-25 2.2E-29 205.7 12.9 120 19-191 702-830 (842)
2 2rdo_7 EF-G, elongation factor 99.9 1.5E-23 5.2E-28 193.3 7.2 149 18-187 545-703 (704)
3 2xex_A Elongation factor G; GT 99.9 2.1E-22 7E-27 185.4 12.2 121 11-131 568-690 (693)
4 1dar_A EF-G, elongation factor 99.9 3E-22 1E-26 184.3 13.1 119 11-129 569-689 (691)
5 2xex_A Elongation factor G; GT 99.9 8.2E-24 2.8E-28 194.7 2.0 150 18-188 533-692 (693)
6 2rdo_7 EF-G, elongation factor 99.9 3E-22 1E-26 184.7 12.0 120 11-130 580-701 (704)
7 2dy1_A Elongation factor G; tr 99.9 3.4E-22 1.2E-26 183.3 12.1 120 11-130 539-660 (665)
8 4fn5_A EF-G 1, elongation fact 99.9 9E-22 3.1E-26 181.6 13.4 120 11-130 586-707 (709)
9 3j25_A Tetracycline resistance 99.9 1.6E-22 5.6E-27 184.6 7.6 114 10-123 501-616 (638)
10 4fn5_A EF-G 1, elongation fact 99.9 4.7E-23 1.6E-27 190.1 2.0 149 17-186 550-708 (709)
11 2dy1_A Elongation factor G; tr 99.9 3.1E-23 1.1E-27 190.1 0.6 149 18-187 504-662 (665)
12 1dar_A EF-G, elongation factor 99.8 2.7E-23 9.1E-28 191.3 -1.6 147 18-185 534-690 (691)
13 3j25_A Tetracycline resistance 99.8 8.5E-22 2.9E-26 179.9 -4.4 139 17-177 467-615 (638)
14 3e3x_A BIPA; MCSG,PSI2, struct 99.6 9.1E-16 3.1E-20 129.2 9.1 85 40-124 122-208 (332)
15 3cb4_D GTP-binding protein LEP 99.6 2.2E-15 7.6E-20 136.5 5.9 113 39-162 397-510 (599)
16 2ywe_A GTP-binding protein LEP 99.6 3.6E-15 1.2E-19 135.1 7.1 113 39-162 401-515 (600)
17 3e3x_A BIPA; MCSG,PSI2, struct 99.3 1.6E-12 5.3E-17 109.6 4.8 81 79-179 126-208 (332)
18 3cb4_D GTP-binding protein LEP 99.1 1.3E-11 4.5E-16 111.8 3.3 77 78-174 401-478 (599)
19 2ywe_A GTP-binding protein LEP 99.1 3.7E-11 1.3E-15 108.8 5.7 78 78-174 405-483 (600)
20 1n0u_A EF-2, elongation factor 98.3 3.7E-07 1.3E-11 85.7 5.6 41 82-122 767-807 (842)
21 2cve_A Hypothetical protein TT 97.6 0.0006 2E-08 53.0 10.0 89 20-109 102-190 (191)
22 1vi7_A Hypothetical protein YI 97.5 0.00052 1.8E-08 54.3 9.3 89 20-109 114-202 (217)
23 3lh2_S 4E10_1VI7A_S0_002_N (T8 96.6 0.0025 8.7E-08 41.8 4.2 64 45-109 7-70 (76)
24 2wbm_A MTHSBDS, ribosome matur 87.6 1.4 4.7E-05 35.4 6.6 67 43-110 182-249 (252)
25 1t95_A Hypothetical protein AF 87.2 1.4 4.9E-05 35.0 6.4 66 44-110 168-234 (240)
26 2kdo_A Ribosome maturation pro 83.9 0.27 9.1E-06 39.6 0.6 68 43-111 171-238 (252)
27 3lh2_S 4E10_1VI7A_S0_002_N (T8 70.3 3.3 0.00011 26.4 2.8 62 82-164 9-70 (76)
28 2wbm_A MTHSBDS, ribosome matur 46.1 36 0.0012 27.1 5.4 67 80-166 184-250 (252)
29 1t95_A Hypothetical protein AF 44.3 50 0.0017 26.0 6.0 67 80-166 169-235 (240)
30 2kdo_A Ribosome maturation pro 39.7 39 0.0013 26.9 4.7 66 80-166 173-238 (252)
31 2cve_A Hypothetical protein TT 39.7 43 0.0015 25.5 4.8 63 80-164 127-190 (191)
32 2vd3_A ATP phosphoribosyltrans 37.2 56 0.0019 26.5 5.4 65 44-109 215-280 (289)
33 1vi7_A Hypothetical protein YI 32.2 57 0.0019 25.3 4.5 65 80-165 139-203 (217)
34 2kwv_A RAD30 homolog B, DNA po 30.8 12 0.00042 21.8 0.3 21 168-188 18-38 (48)
35 2khu_A Immunoglobulin G-bindin 30.4 20 0.0007 24.3 1.4 18 170-187 72-89 (108)
36 1nh8_A ATP phosphoribosyltrans 29.3 93 0.0032 25.4 5.4 79 22-108 215-294 (304)
37 1zpv_A ACT domain protein; str 24.6 1.3E+02 0.0045 18.7 6.6 57 46-102 6-69 (91)
38 2fgc_A Acetolactate synthase, 24.2 2.2E+02 0.0076 21.5 6.5 56 43-101 113-168 (193)
No 1
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.92 E-value=6.6e-25 Score=205.73 Aligned_cols=120 Identities=24% Similarity=0.320 Sum_probs=107.4
Q ss_pred hHHHHHHHHHHHHHHHHHcCceeeeeeEEEEEEecCCchhhHHHHHhhcCceeeeeeecCCeEEEEEeecchhhcchhhh
Q psy11837 19 TYVILMCIATGASMALKEAGCILLEPYMYLEIISDEQYVHGILADLSRRRADIRSVEDRGSSKVIIAEAPLSELLGYCQR 98 (192)
Q Consensus 19 ~~~~~~a~~~~~~~al~~ag~~l~EPv~~v~I~vp~~~~g~V~~~l~~rrg~i~~~~~~~~~~~i~~~vP~~~~~~~~~~ 98 (192)
+.+|++|++++|++|+.+|+|.++||||.|+|.+|++++|.|+++|++|||.|.+.+..
T Consensus 702 ~g~f~~a~~~a~~~a~~~a~p~LLEPi~~veI~vP~e~~G~V~~dL~~RRG~i~~~~~~--------------------- 760 (842)
T 1n0u_A 702 GGQIIPTMRRATYAGFLLADPKIQEPVFLVEIQCPEQAVGGIYSVLNKKRGQVVSEEQR--------------------- 760 (842)
T ss_dssp HHHHHHHHHHHHHHHHHHSCEEEEEEEEEEEEEECGGGHHHHHHHHHTTTCEEEEEEC----------------------
T ss_pred hhHHHHHHHHHHHHHHHhCCCeEEeeEEEEEEEccHHHHHHHHHHHHhcCcEEeccccC---------------------
Confidence 56799999999999999999999999999999999999999999999999999865320
Q ss_pred hhhhccceEEeeeeecceeecCchHHHHHHhcccCCCcceeccCchhhhhhhhhhhhhhccCceeEEEEecccccCCcH-
Q psy11837 99 VRTLSSGRSHFSMEFLCFKQVSSQNEAQAVRNITGFDPVIIAEAPLSELLGYCQRVRTLSSGRSHFSMEFLCFKQVSSQ- 177 (192)
Q Consensus 99 L~s~T~G~g~~~~~~~~y~~~p~~~~~~i~~~~~~~~~~i~a~~P~~~~~~y~~~lrs~T~G~g~~~~~~~~y~~v~~~- 177 (192)
.| ....+|+|++|++||++|+++|||+|+|+|+|+|+|+||++||++
T Consensus 761 -----~g---------------------------~~~~~I~a~vP~aE~fgy~~~LRs~T~G~g~~~~~F~~y~~vp~~~ 808 (842)
T 1n0u_A 761 -----PG---------------------------TPLFTVKAYLPVNESFGFTGELRQATGGQAFPQMVFDHWSTLGSDP 808 (842)
T ss_dssp ----------------------------------CCCEEEEEEEEGGGCTTHHHHHHHHTTTCCEEEEEEEEEEECCSCT
T ss_pred -----CC---------------------------CceEEEEEEcChHHhhhhHHHHHhhCCCCceEEEEeccceeCCCCc
Confidence 00 134689999999999999999999999999999999999999987
Q ss_pred -----HHHHHH---HHhCCCCC
Q psy11837 178 -----NEAQAV---RNITGFDP 191 (192)
Q Consensus 178 -----~~~~~~---~~~~~~~~ 191 (192)
++++++ |.||||++
T Consensus 809 ~~~~~~a~~~~~~~R~rKGl~~ 830 (842)
T 1n0u_A 809 LDPTSKAGEIVLAARKRHGMKE 830 (842)
T ss_dssp TCTTSHHHHHHHHHHHHTTCCS
T ss_pred cchhhHHHHHHHHHHHhCCCCC
Confidence 788776 89999975
No 2
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.88 E-value=1.5e-23 Score=193.25 Aligned_cols=149 Identities=20% Similarity=0.228 Sum_probs=123.3
Q ss_pred ChHHHHHHHHHHHHHHHHHcCceeeeeeEEEEEEecCCchhhHH-HHHh----hcCceeeeeeec-----CCeEEEEEee
Q psy11837 18 RTYVILMCIATGASMALKEAGCILLEPYMYLEIISDEQYVHGIL-ADLS----RRRADIRSVEDR-----GSSKVIIAEA 87 (192)
Q Consensus 18 ~~~~~~~a~~~~~~~al~~ag~~l~EPv~~v~I~vp~~~~g~V~-~~l~----~rrg~i~~~~~~-----~~~~~i~~~v 87 (192)
+|.+|++++.+|+++|+++ ||+.+||+.+|+|++.++..|.+. ++.+ .++|...++..+ .|++.+++.+
T Consensus 545 ~p~~~~~~v~~g~~~a~~~-G~l~g~pv~~v~v~l~dg~~h~~ds~~~~f~~a~~~a~~~a~~~a~p~llEPi~~~~i~~ 623 (704)
T 2rdo_7 545 IPGEYIPAVDKGIQEQLKA-GPLAGYPVVDMGIRLHFGSYHDVDSSELAFKLAASIAFKEGFKKAKPVLLEPIMKVEVET 623 (704)
T ss_pred CcHHHHHHHHHHHHHHHhc-CCcCCCceeeEEEEEEeccccCCCCcHHHHHHHHHHHHHHHHHhcCCeeeeeEEEEEEEe
Confidence 5789999999999999986 999999999999999999888773 3433 344444444433 5799999999
Q ss_pred cchhhcchhhhhhhhccceEEeeeeecceeecCchHHHHHHhcccCCCcceeccCchhhhhhhhhhhhhhccCceeEEEE
Q psy11837 88 PLSELLGYCQRVRTLSSGRSHFSMEFLCFKQVSSQNEAQAVRNITGFDPVIIAEAPLSELLGYCQRVRTLSSGRSHFSME 167 (192)
Q Consensus 88 P~~~~~~~~~~L~s~T~G~g~~~~~~~~y~~~p~~~~~~i~~~~~~~~~~i~a~~P~~~~~~y~~~lrs~T~G~g~~~~~ 167 (192)
|.++++++.++|.+ .||.+.- . +..++...|+|++|++||++|.++|||+|+|+|+|+|+
T Consensus 624 p~~~~G~v~~~l~~---rrG~i~~----~-------------~~~~~~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~ 683 (704)
T 2rdo_7 624 PEENTGDVIGDLSR---RRGMLKG----Q-------------ESEVTGVKIHAEVPLSEMFGYATQLRSLTKGRASYTME 683 (704)
T ss_pred CHHHHhHHHHHHHh---CCceEeC----c-------------eecCCeEEEEEEecHHHHhhHHHHhHhhcCCceEEEEE
Confidence 99999999999966 3555211 0 12234689999999999999999999999999999999
Q ss_pred ecccccCCcHHHHHHHHHhC
Q psy11837 168 FLCFKQVSSQNEAQAVRNIT 187 (192)
Q Consensus 168 ~~~y~~v~~~~~~~~~~~~~ 187 (192)
|+||++||++.+++|++++.
T Consensus 684 f~~y~~~~~~~~~~i~~~~~ 703 (704)
T 2rdo_7 684 FLKYDEAPSNVAQAVIEARG 703 (704)
T ss_pred eCcceECCccHHHHHHHHhc
Confidence 99999999999999998753
No 3
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.88 E-value=2.1e-22 Score=185.44 Aligned_cols=121 Identities=26% Similarity=0.470 Sum_probs=112.8
Q ss_pred CCcccCCCh--HHHHHHHHHHHHHHHHHcCceeeeeeEEEEEEecCCchhhHHHHHhhcCceeeeeeecCCeEEEEEeec
Q psy11837 11 GGRLYSPRT--YVILMCIATGASMALKEAGCILLEPYMYLEIISDEQYVHGILADLSRRRADIRSVEDRGSSKVIIAEAP 88 (192)
Q Consensus 11 ~~~~~~~~~--~~~~~a~~~~~~~al~~ag~~l~EPv~~v~I~vp~~~~g~V~~~l~~rrg~i~~~~~~~~~~~i~~~vP 88 (192)
+|.+|.+.+ .+|+.|+++++++||.+|+|.++||++.|+|.+|++++|.|+++|++|||.+.+++..++...|++.+|
T Consensus 568 dg~~h~vds~~~~f~~a~~~a~~~a~~~a~p~llEPi~~~~i~~p~~~~G~v~~~l~~rrG~i~~~~~~~~~~~i~a~vP 647 (693)
T 2xex_A 568 DGSYHDVDSSEMAFKIAASLALKEAAKKCDPVILEPMMKVTIEMPEEYMGDIMGDVTSRRGRVDGMEPRGNAQVVNAYVP 647 (693)
T ss_dssp EEECCTTTCCHHHHHHHHHHHHHHHHTTSCEEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEETTEEEEEEEEE
T ss_pred eccccCCCCCHHHHHHHHHHHHHHHHHhcCCEEEeeeEEEEEEEcHHHHHHHHHHHHhCCcEeecccccCCeEEEEEEeC
Confidence 456776544 569999999999999999999999999999999999999999999999999999998878999999999
Q ss_pred chhhcchhhhhhhhccceEEeeeeecceeecCchHHHHHHhcc
Q psy11837 89 LSELLGYCQRVRTLSSGRSHFSMEFLCFKQVSSQNEAQAVRNI 131 (192)
Q Consensus 89 ~~~~~~~~~~L~s~T~G~g~~~~~~~~y~~~p~~~~~~i~~~~ 131 (192)
++++++|..+||+.|+|+|.+++.|+||+++|++.+++++.+.
T Consensus 648 ~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~~~~~~~~~i~~~~ 690 (693)
T 2xex_A 648 LSEMFGYATSLRSNTQGRGTYTMYFDHYAEVPKSIAEDIIKKN 690 (693)
T ss_dssp GGGCTTHHHHHHHHTTTCCEEEEEEEEEEECCHHHHHHHHHHH
T ss_pred HHHHHhHHHHhHHhcCCceEEEEEeCcceECChhHHHHHHHHh
Confidence 9999999999999999999999999999999999998888643
No 4
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.88 E-value=3e-22 Score=184.34 Aligned_cols=119 Identities=28% Similarity=0.515 Sum_probs=111.6
Q ss_pred CCcccCCCh--HHHHHHHHHHHHHHHHHcCceeeeeeEEEEEEecCCchhhHHHHHhhcCceeeeeeecCCeEEEEEeec
Q psy11837 11 GGRLYSPRT--YVILMCIATGASMALKEAGCILLEPYMYLEIISDEQYVHGILADLSRRRADIRSVEDRGSSKVIIAEAP 88 (192)
Q Consensus 11 ~~~~~~~~~--~~~~~a~~~~~~~al~~ag~~l~EPv~~v~I~vp~~~~g~V~~~l~~rrg~i~~~~~~~~~~~i~~~vP 88 (192)
+|.+|.+.+ .+|+.|+++++++|+.+|+|.++||++.|+|.+|++++|.|+++|++|||.+.+++..++...|++.+|
T Consensus 569 dg~~h~vds~~~~f~~a~~~a~~~a~~~a~~~llEPi~~~~i~~p~~~~G~v~~~l~~rrG~i~~~~~~~~~~~i~a~vP 648 (691)
T 1dar_A 569 DGSYHEVDSSEMAFKIAGSMAIKEAVQKGDPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAFVP 648 (691)
T ss_dssp EECCCTTTBCHHHHHHHHHHHHHHHHHTSCCEEEEEEEEEEEEECTTTTTHHHHHHHHTTCCEEEEEEETTEEEEEEEEE
T ss_pred eeeccccCcchHHHHHHHHHHHHHHHHHcCCEEeeceEEEEEEEcHHHHhHHHHHHHHCCceeecceecCCeEEEEEEec
Confidence 466777544 569999999999999999999999999999999999999999999999999999998878999999999
Q ss_pred chhhcchhhhhhhhccceEEeeeeecceeecCchHHHHHHh
Q psy11837 89 LSELLGYCQRVRTLSSGRSHFSMEFLCFKQVSSQNEAQAVR 129 (192)
Q Consensus 89 ~~~~~~~~~~L~s~T~G~g~~~~~~~~y~~~p~~~~~~i~~ 129 (192)
++++++|..+||+.|+|+|.+++.|+||+++|++.+++++.
T Consensus 649 ~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~~~~~~~~~i~~ 689 (691)
T 1dar_A 649 LAEMFGYATDLRSKTQGRGSFVMFFDHYQEVPKQVQEKLIK 689 (691)
T ss_dssp TTTSSSHHHHHHHHTTTCCEEEEEEEEEEECCHHHHHHHHC
T ss_pred HHHHhhHHHHHHHhcCCceEEEEEeCcceECChhHHHHHHh
Confidence 99999999999999999999999999999999999888874
No 5
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.87 E-value=8.2e-24 Score=194.73 Aligned_cols=150 Identities=19% Similarity=0.274 Sum_probs=122.8
Q ss_pred ChHHHHHHHHHHHHHHHHHcCceeeeeeEEEEEEecCCchhhHH-HHHh----hcCceeeeeeec-----CCeEEEEEee
Q psy11837 18 RTYVILMCIATGASMALKEAGCILLEPYMYLEIISDEQYVHGIL-ADLS----RRRADIRSVEDR-----GSSKVIIAEA 87 (192)
Q Consensus 18 ~~~~~~~a~~~~~~~al~~ag~~l~EPv~~v~I~vp~~~~g~V~-~~l~----~rrg~i~~~~~~-----~~~~~i~~~v 87 (192)
+|.+|++++.+|+++|+++ ||+.+||+.+|+|++.++..|.|. ++.+ .++|...++..+ .|++.+++.+
T Consensus 533 ~p~~~~~~v~~g~~~a~~~-G~l~g~pv~~v~v~l~dg~~h~vds~~~~f~~a~~~a~~~a~~~a~p~llEPi~~~~i~~ 611 (693)
T 2xex_A 533 VPREYIPSVEAGLKDAMEN-GVLAGYPLIDVKAKLYDGSYHDVDSSEMAFKIAASLALKEAAKKCDPVILEPMMKVTIEM 611 (693)
T ss_dssp SCGGGHHHHHHHHHHHHHT-CSSSSCCBCSEEEEEEEEECCTTTCCHHHHHHHHHHHHHHHHTTSCEEEEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHhc-CCccCCceeeEEEEEEeccccCCCCCHHHHHHHHHHHHHHHHHhcCCEEEeeeEEEEEEE
Confidence 5788999999999999987 999999999999999988887763 3332 344443333332 4699999999
Q ss_pred cchhhcchhhhhhhhccceEEeeeeecceeecCchHHHHHHhcccCCCcceeccCchhhhhhhhhhhhhhccCceeEEEE
Q psy11837 88 PLSELLGYCQRVRTLSSGRSHFSMEFLCFKQVSSQNEAQAVRNITGFDPVIIAEAPLSELLGYCQRVRTLSSGRSHFSME 167 (192)
Q Consensus 88 P~~~~~~~~~~L~s~T~G~g~~~~~~~~y~~~p~~~~~~i~~~~~~~~~~i~a~~P~~~~~~y~~~lrs~T~G~g~~~~~ 167 (192)
|.++++++.++|.+ .+|+.. .+ +..++...|+|++|++||++|.++|||+|+|+|+|+|+
T Consensus 612 p~~~~G~v~~~l~~-rrG~i~-~~------------------~~~~~~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~ 671 (693)
T 2xex_A 612 PEEYMGDIMGDVTS-RRGRVD-GM------------------EPRGNAQVVNAYVPLSEMFGYATSLRSNTQGRGTYTMY 671 (693)
T ss_dssp EGGGHHHHHHHHHH-TTCEEE-EE------------------EEETTEEEEEEEEEGGGCTTHHHHHHHHTTTCCEEEEE
T ss_pred cHHHHHHHHHHHHh-CCcEee-cc------------------cccCCeEEEEEEeCHHHHHhHHHHhHHhcCCceEEEEE
Confidence 99999999999976 334332 11 11234689999999999999999999999999999999
Q ss_pred ecccccCCcHHHHHHHHHhCC
Q psy11837 168 FLCFKQVSSQNEAQAVRNITG 188 (192)
Q Consensus 168 ~~~y~~v~~~~~~~~~~~~~~ 188 (192)
|+||++||++.+++|+++++|
T Consensus 672 f~~y~~~~~~~~~~i~~~~~~ 692 (693)
T 2xex_A 672 FDHYAEVPKSIAEDIIKKNKG 692 (693)
T ss_dssp EEEEEECCHHHHHHHHHHHTC
T ss_pred eCcceECChhHHHHHHHHhhc
Confidence 999999999999999998754
No 6
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.87 E-value=3e-22 Score=184.65 Aligned_cols=120 Identities=29% Similarity=0.486 Sum_probs=112.4
Q ss_pred CCcccCCCh--HHHHHHHHHHHHHHHHHcCceeeeeeEEEEEEecCCchhhHHHHHhhcCceeeeeeecCCeEEEEEeec
Q psy11837 11 GGRLYSPRT--YVILMCIATGASMALKEAGCILLEPYMYLEIISDEQYVHGILADLSRRRADIRSVEDRGSSKVIIAEAP 88 (192)
Q Consensus 11 ~~~~~~~~~--~~~~~a~~~~~~~al~~ag~~l~EPv~~v~I~vp~~~~g~V~~~l~~rrg~i~~~~~~~~~~~i~~~vP 88 (192)
+|.+|.+.+ .+|+.|++++|++||.+|+|.++|||+.|+|.+|++++|.|+++|++|||.+.+++..++...|++.+|
T Consensus 580 dg~~h~~ds~~~~f~~a~~~a~~~a~~~a~p~llEPi~~~~i~~p~~~~G~v~~~l~~rrG~i~~~~~~~~~~~i~a~vP 659 (704)
T 2rdo_7 580 FGSYHDVDSSELAFKLAASIAFKEGFKKAKPVLLEPIMKVEVETPEENTGDVIGDLSRRRGMLKGQESEVTGVKIHAEVP 659 (704)
T ss_pred eccccCCCCcHHHHHHHHHHHHHHHHHhcCCeeeeeEEEEEEEeCHHHHhHHHHHHHhCCceEeCceecCCeEEEEEEec
Confidence 567776644 569999999999999999999999999999999999999999999999999999988778899999999
Q ss_pred chhhcchhhhhhhhccceEEeeeeecceeecCchHHHHHHhc
Q psy11837 89 LSELLGYCQRVRTLSSGRSHFSMEFLCFKQVSSQNEAQAVRN 130 (192)
Q Consensus 89 ~~~~~~~~~~L~s~T~G~g~~~~~~~~y~~~p~~~~~~i~~~ 130 (192)
++++++|..+||+.|+|+|.+++.|+||+++|++.+++++.+
T Consensus 660 ~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~~~~~~~~~i~~~ 701 (704)
T 2rdo_7 660 LSEMFGYATQLRSLTKGRASYTMEFLKYDEAPSNVAQAVIEA 701 (704)
T ss_pred HHHHhhHHHHhHhhcCCceEEEEEeCcceECCccHHHHHHHH
Confidence 999999999999999999999999999999999999888754
No 7
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.87 E-value=3.4e-22 Score=183.27 Aligned_cols=120 Identities=26% Similarity=0.459 Sum_probs=112.8
Q ss_pred CCcccCCCh--HHHHHHHHHHHHHHHHHcCceeeeeeEEEEEEecCCchhhHHHHHhhcCceeeeeeecCCeEEEEEeec
Q psy11837 11 GGRLYSPRT--YVILMCIATGASMALKEAGCILLEPYMYLEIISDEQYVHGILADLSRRRADIRSVEDRGSSKVIIAEAP 88 (192)
Q Consensus 11 ~~~~~~~~~--~~~~~a~~~~~~~al~~ag~~l~EPv~~v~I~vp~~~~g~V~~~l~~rrg~i~~~~~~~~~~~i~~~vP 88 (192)
+|.+|++.+ .+|+.|++++|++|+.+|+|.++||++.|+|.+|++++|.|+++|++|||.+.+++..++...|++.+|
T Consensus 539 dg~~h~~ds~~~~f~~a~~~a~~~a~~~a~p~llEPi~~~~i~~p~~~~g~v~~~l~~rrG~i~~~~~~~~~~~i~a~~P 618 (665)
T 2dy1_A 539 NGSYHEVDSSDLAFQIAASLAFKKVMAEAHPVLLEPIYRLKVLAPQERVGDVLSDLQARRGRILGMEQEGALSVVHAEVP 618 (665)
T ss_dssp EEECCTTTBCHHHHHHHHHHHHHHHHHHSCEEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEETTEEEEEEEEE
T ss_pred eeeccCCCCCHHHHHHHHHHHHHHHHhhCCCEEEeeeEEEEEEECHHHHHHHHHHHHHCCCEEeCcEecCCeEEEEEEEC
Confidence 567777655 569999999999999999999999999999999999999999999999999999998878999999999
Q ss_pred chhhcchhhhhhhhccceEEeeeeecceeecCchHHHHHHhc
Q psy11837 89 LSELLGYCQRVRTLSSGRSHFSMEFLCFKQVSSQNEAQAVRN 130 (192)
Q Consensus 89 ~~~~~~~~~~L~s~T~G~g~~~~~~~~y~~~p~~~~~~i~~~ 130 (192)
++++++|..+||+.|+|+|.+++.|+||+++|++.+++++.+
T Consensus 619 ~~e~~~~~~~Lrs~T~G~~~~~~~f~~y~~~~~~~~~~~~~~ 660 (665)
T 2dy1_A 619 LAEVLEYYKALPGLTGGAGAYTLEFSHYAEVPPHLAQRIVQE 660 (665)
T ss_dssp GGGCTTHHHHHHHHHTTCCEEEEEEEEEEECCHHHHHHHHHH
T ss_pred HHHHhhHHHHhHhhcCCcEEEEEEeCceeECCccHHHHHHHH
Confidence 999999999999999999999999999999999999888764
No 8
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.87 E-value=9e-22 Score=181.58 Aligned_cols=120 Identities=33% Similarity=0.552 Sum_probs=112.1
Q ss_pred CCcccCCCh--HHHHHHHHHHHHHHHHHcCceeeeeeEEEEEEecCCchhhHHHHHhhcCceeeeeeecCCeEEEEEeec
Q psy11837 11 GGRLYSPRT--YVILMCIATGASMALKEAGCILLEPYMYLEIISDEQYVHGILADLSRRRADIRSVEDRGSSKVIIAEAP 88 (192)
Q Consensus 11 ~~~~~~~~~--~~~~~a~~~~~~~al~~ag~~l~EPv~~v~I~vp~~~~g~V~~~l~~rrg~i~~~~~~~~~~~i~~~vP 88 (192)
+|.+|++.+ .+|+.|+..++++|+.+|+|.++|||+.|+|.+|++++|.|+++|++|||.|.+++..++...|++.+|
T Consensus 586 dg~~h~~~s~~~~f~~a~~~a~~~a~~~a~p~LlEPi~~veI~~p~~~~G~V~~~L~~RRG~i~~~~~~~~~~~i~a~vP 665 (709)
T 4fn5_A 586 DGSYHDVDSNEMAFKIAASMATKQLAQKGGGKVLEPIMKVEVVTPEDYMGDVMGDLNRRRGLIQGMEDTVSGKVIRAEVP 665 (709)
T ss_dssp ECCCCTTTBCHHHHHHHHHHHHHTHHHHSCCEEEEEEEEEEEEEETTTHHHHHHHHGGGTCEEEEEEECSSEEEEEEEEE
T ss_pred EccccCCCCChHHHHHHHHHHHHHHHHHCCCEEECceEEEEEEECHHHHHHHHHHHHhcCCEEeceEecCCCEEEEEEec
Confidence 566777666 459999999999999999999999999999999999999999999999999999988888888999999
Q ss_pred chhhcchhhhhhhhccceEEeeeeecceeecCchHHHHHHhc
Q psy11837 89 LSELLGYCQRVRTLSSGRSHFSMEFLCFKQVSSQNEAQAVRN 130 (192)
Q Consensus 89 ~~~~~~~~~~L~s~T~G~g~~~~~~~~y~~~p~~~~~~i~~~ 130 (192)
++++++|..+||+.|+|+|.+++.|+||+++|++.+++++.+
T Consensus 666 v~E~~gf~~~LRs~T~G~a~~~~~F~~y~~vp~~~~~~~i~~ 707 (709)
T 4fn5_A 666 LGEMFGYATDVRSMSQGRASYSMEFSKYAEAPSNIVEALVKK 707 (709)
T ss_dssp SGGGTTHHHHHHHHTTTCCEEECCEEEEEECCHHHHHHHHHT
T ss_pred HHHhhCHHHHHHhhCCCeEEEEEEECCcccCCcCHHHHHHHh
Confidence 999999999999999999999999999999999999888754
No 9
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.86 E-value=1.6e-22 Score=184.57 Aligned_cols=114 Identities=23% Similarity=0.339 Sum_probs=107.8
Q ss_pred CCCcccCCCh--HHHHHHHHHHHHHHHHHcCceeeeeeEEEEEEecCCchhhHHHHHhhcCceeeeeeecCCeEEEEEee
Q psy11837 10 QGGRLYSPRT--YVILMCIATGASMALKEAGCILLEPYMYLEIISDEQYVHGILADLSRRRADIRSVEDRGSSKVIIAEA 87 (192)
Q Consensus 10 ~~~~~~~~~~--~~~~~a~~~~~~~al~~ag~~l~EPv~~v~I~vp~~~~g~V~~~l~~rrg~i~~~~~~~~~~~i~~~v 87 (192)
++|.+|.+++ .+|+.|+..++++||.+|+|.++||++.|+|.+|++++|.|+++|++|||.|.+++..++...|++.+
T Consensus 501 ~dg~~h~~~s~~~~f~~a~~~a~~~a~~~a~p~LLEPi~~veI~vP~~~~G~V~~~L~~RRG~i~~~~~~~~~~~i~a~v 580 (638)
T 3j25_A 501 KYGLYYSPVSTPADFRMLAPIVLEQVLKKAGTELLEPYLSFKIYAPQEYLSRAYNDAPKYCANIVDTQLKNNEVILSGEI 580 (638)
T ss_dssp CCCCCSSCSCCSHHHHHHHHHHHHHHHHHHCCBCCCCCTTCEEEEETTTHHHHHHHHHHTTCCCCCCCCCTTEEEEECCC
T ss_pred EECcccCCCCCHHHHHHHHHHHHHHHHHHCCCEEEcCcEEEEEEECHHHHHHHHHHHHhCCcEEeCeEecCCeEEEEEEE
Confidence 4567787766 56999999999999999999999999999999999999999999999999999998888899999999
Q ss_pred cchhhcchhhhhhhhccceEEeeeeecceeecCchH
Q psy11837 88 PLSELLGYCQRVRTLSSGRSHFSMEFLCFKQVSSQN 123 (192)
Q Consensus 88 P~~~~~~~~~~L~s~T~G~g~~~~~~~~y~~~p~~~ 123 (192)
|++++++|..+||+.|+|+|.+++.|+||+++|+|+
T Consensus 581 P~~e~~gy~~~Lrs~T~G~a~~~~~f~~y~~vpgdp 616 (638)
T 3j25_A 581 PARCIQEYRSDLTFFTNGRSVCLTELKGYHVTTGEP 616 (638)
T ss_dssp SSCCHHHHHHHHHHTTTTCCEEECCCCCCCCCCSCC
T ss_pred CHHHhhCHHHHHHhhCCCcEEEEEEECceEECCCCc
Confidence 999999999999999999999999999999999876
No 10
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.86 E-value=4.7e-23 Score=190.11 Aligned_cols=149 Identities=21% Similarity=0.246 Sum_probs=120.1
Q ss_pred CChHHHHHHHHHHHHHHHHHcCceeeeeeEEEEEEecCCchhhHH-HHHh----hcCceeeeeeec-----CCeEEEEEe
Q psy11837 17 PRTYVILMCIATGASMALKEAGCILLEPYMYLEIISDEQYVHGIL-ADLS----RRRADIRSVEDR-----GSSKVIIAE 86 (192)
Q Consensus 17 ~~~~~~~~a~~~~~~~al~~ag~~l~EPv~~v~I~vp~~~~g~V~-~~l~----~rrg~i~~~~~~-----~~~~~i~~~ 86 (192)
.+|.+|++++.+|+++|+++ ||+.+||+.+|++++.++..|.+. +..+ .+++...++..+ .|++.+++.
T Consensus 550 ~~p~~~~~~v~~g~~~a~~~-G~l~g~pv~~v~v~l~dg~~h~~~s~~~~f~~a~~~a~~~a~~~a~p~LlEPi~~veI~ 628 (709)
T 4fn5_A 550 VVPKEYIPAIQKGIEEQMKN-GVVAGYPLIGLKATVFDGSYHDVDSNEMAFKIAASMATKQLAQKGGGKVLEPIMKVEVV 628 (709)
T ss_dssp SSCGGGHHHHHHHHHHHHHH-CSSSSCCBSEEEEEEEECCCCTTTBCHHHHHHHHHHHHHTHHHHSCCEEEEEEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHHhc-CcccCCceeeeEEEEEEccccCCCCChHHHHHHHHHHHHHHHHHCCCEEECceEEEEEE
Confidence 46789999999999999987 999999999999999988877763 3332 233333333222 469999999
Q ss_pred ecchhhcchhhhhhhhccceEEeeeeecceeecCchHHHHHHhcccCCCcceeccCchhhhhhhhhhhhhhccCceeEEE
Q psy11837 87 APLSELLGYCQRVRTLSSGRSHFSMEFLCFKQVSSQNEAQAVRNITGFDPVIIAEAPLSELLGYCQRVRTLSSGRSHFSM 166 (192)
Q Consensus 87 vP~~~~~~~~~~L~s~T~G~g~~~~~~~~y~~~p~~~~~~i~~~~~~~~~~i~a~~P~~~~~~y~~~lrs~T~G~g~~~~ 166 (192)
+|.+.++++.++|.++ ||.+. +. +..++..+|+|.+|++||++|.++|||+|+|+|+|+|
T Consensus 629 ~p~~~~G~V~~~L~~R---RG~i~----~~-------------~~~~~~~~i~a~vPv~E~~gf~~~LRs~T~G~a~~~~ 688 (709)
T 4fn5_A 629 TPEDYMGDVMGDLNRR---RGLIQ----GM-------------EDTVSGKVIRAEVPLGEMFGYATDVRSMSQGRASYSM 688 (709)
T ss_dssp EETTTHHHHHHHHGGG---TCEEE----EE-------------EECSSEEEEEEEEESGGGTTHHHHHHHHTTTCCEEEC
T ss_pred ECHHHHHHHHHHHHhc---CCEEe----ce-------------EecCCCEEEEEEecHHHhhCHHHHHHhhCCCeEEEEE
Confidence 9999999999999663 44421 11 1234567899999999999999999999999999999
Q ss_pred EecccccCCcHHHHHHHHHh
Q psy11837 167 EFLCFKQVSSQNEAQAVRNI 186 (192)
Q Consensus 167 ~~~~y~~v~~~~~~~~~~~~ 186 (192)
+|+||++||++.++++|+++
T Consensus 689 ~F~~y~~vp~~~~~~~i~~~ 708 (709)
T 4fn5_A 689 EFSKYAEAPSNIVEALVKKQ 708 (709)
T ss_dssp CEEEEEECCHHHHHHHHHTC
T ss_pred EECCcccCCcCHHHHHHHhc
Confidence 99999999999999999763
No 11
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.86 E-value=3.1e-23 Score=190.10 Aligned_cols=149 Identities=20% Similarity=0.234 Sum_probs=121.6
Q ss_pred ChHHHHHHHHHHHHHHHHHcCceeeeeeEEEEEEecCCchhhHH-HHHh----hcCceeeeeeec-----CCeEEEEEee
Q psy11837 18 RTYVILMCIATGASMALKEAGCILLEPYMYLEIISDEQYVHGIL-ADLS----RRRADIRSVEDR-----GSSKVIIAEA 87 (192)
Q Consensus 18 ~~~~~~~a~~~~~~~al~~ag~~l~EPv~~v~I~vp~~~~g~V~-~~l~----~rrg~i~~~~~~-----~~~~~i~~~v 87 (192)
+|.+|++|+.+|+++|+++ ||+.++|+.+|+|++.++..|.|. ++.+ .++|...++..+ .|++.+++.+
T Consensus 504 ~~~~~~~~v~~g~~~a~~~-G~l~g~pv~~v~v~l~dg~~h~~ds~~~~f~~a~~~a~~~a~~~a~p~llEPi~~~~i~~ 582 (665)
T 2dy1_A 504 IPSKYQEAIEEGIKEAAKK-GVLAGFPVMGFKAIVYNGSYHEVDSSDLAFQIAASLAFKKVMAEAHPVLLEPIYRLKVLA 582 (665)
T ss_dssp SCGGGHHHHHHHHHHHHTS-CTTTSCCBCSEEEEEEEEECCTTTBCHHHHHHHHHHHHHHHHHHSCEEEEEEEEEEEEEE
T ss_pred chHHHHHHHHHHHHHHHhc-CCccCCceeeEEEEEEeeeccCCCCCHHHHHHHHHHHHHHHHhhCCCEEEeeeEEEEEEE
Confidence 6789999999999999986 999999999999999988777663 2332 344443333332 4699999999
Q ss_pred cchhhcchhhhhhhhccceEEeeeeecceeecCchHHHHHHhcccCCCcceeccCchhhhhhhhhhhhhhccCceeEEEE
Q psy11837 88 PLSELLGYCQRVRTLSSGRSHFSMEFLCFKQVSSQNEAQAVRNITGFDPVIIAEAPLSELLGYCQRVRTLSSGRSHFSME 167 (192)
Q Consensus 88 P~~~~~~~~~~L~s~T~G~g~~~~~~~~y~~~p~~~~~~i~~~~~~~~~~i~a~~P~~~~~~y~~~lrs~T~G~g~~~~~ 167 (192)
|.++++++.++|.++ ||.+.- . +..++...|+|++|++||++|.++|||+|+|+|+|+|+
T Consensus 583 p~~~~g~v~~~l~~r---rG~i~~----~-------------~~~~~~~~i~a~~P~~e~~~~~~~Lrs~T~G~~~~~~~ 642 (665)
T 2dy1_A 583 PQERVGDVLSDLQAR---RGRILG----M-------------EQEGALSVVHAEVPLAEVLEYYKALPGLTGGAGAYTLE 642 (665)
T ss_dssp EGGGHHHHHHHHHHT---TCEEEE----E-------------EEETTEEEEEEEEEGGGCTTHHHHHHHHHTTCCEEEEE
T ss_pred CHHHHHHHHHHHHHC---CCEEeC----c-------------EecCCeEEEEEEECHHHHhhHHHHhHhhcCCcEEEEEE
Confidence 999999999999763 444211 1 11235689999999999999999999999999999999
Q ss_pred ecccccCCcHHHHHHHHHhC
Q psy11837 168 FLCFKQVSSQNEAQAVRNIT 187 (192)
Q Consensus 168 ~~~y~~v~~~~~~~~~~~~~ 187 (192)
|+||++||++.+++++++++
T Consensus 643 f~~y~~~~~~~~~~~~~~~~ 662 (665)
T 2dy1_A 643 FSHYAEVPPHLAQRIVQERA 662 (665)
T ss_dssp EEEEEECCHHHHHHHHHHHH
T ss_pred eCceeECCccHHHHHHHHHh
Confidence 99999999999999998764
No 12
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.85 E-value=2.7e-23 Score=191.28 Aligned_cols=147 Identities=18% Similarity=0.270 Sum_probs=119.9
Q ss_pred ChHHHHHHHHHHHHHHHHHcCceeeeeeEEEEEEecCCchhhHH-HHHh----hcCceeeeeeec-----CCeEEEEEee
Q psy11837 18 RTYVILMCIATGASMALKEAGCILLEPYMYLEIISDEQYVHGIL-ADLS----RRRADIRSVEDR-----GSSKVIIAEA 87 (192)
Q Consensus 18 ~~~~~~~a~~~~~~~al~~ag~~l~EPv~~v~I~vp~~~~g~V~-~~l~----~rrg~i~~~~~~-----~~~~~i~~~v 87 (192)
+|.+|++++.+|+++|+++ ||+.+||+.+|+|++.++..|.|. ++.+ .++|...++..+ .|++.+++.+
T Consensus 534 ~p~~~~~~v~~g~~~a~~~-G~l~g~pv~~v~v~l~dg~~h~vds~~~~f~~a~~~a~~~a~~~a~~~llEPi~~~~i~~ 612 (691)
T 1dar_A 534 IPKEYIPAVQKGIEEAMQS-GPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKGDPVILEPIMRVEVTT 612 (691)
T ss_dssp SCTTTHHHHHHHHHHHTTS-CTTTSCCBCSEEEEEEEECCCTTTBCHHHHHHHHHHHHHHHHHTSCCEEEEEEEEEEEEE
T ss_pred CcHHHHHHHHHHHHHHHhc-CCccCCceeeEEEEEEeeeccccCcchHHHHHHHHHHHHHHHHHcCCEEeeceEEEEEEE
Confidence 5788999999999999986 999999999999999998887763 3332 344444444333 3699999999
Q ss_pred cchhhcchhhhhhhhccceEEeeeeecceeecCchHHHHHHhcccCCCcceeccCchhhhhhhhhhhhhhccCceeEEEE
Q psy11837 88 PLSELLGYCQRVRTLSSGRSHFSMEFLCFKQVSSQNEAQAVRNITGFDPVIIAEAPLSELLGYCQRVRTLSSGRSHFSME 167 (192)
Q Consensus 88 P~~~~~~~~~~L~s~T~G~g~~~~~~~~y~~~p~~~~~~i~~~~~~~~~~i~a~~P~~~~~~y~~~lrs~T~G~g~~~~~ 167 (192)
|.++++++.++|.+ .+|+.. .+ +..++...|+|++|++||++|.++|||+|+|+|+|+|+
T Consensus 613 p~~~~G~v~~~l~~-rrG~i~-~~------------------~~~~~~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~ 672 (691)
T 1dar_A 613 PEEYMGDVIGDLNA-RRGQIL-GM------------------EPRGNAQVIRAFVPLAEMFGYATDLRSKTQGRGSFVMF 672 (691)
T ss_dssp CTTTTTHHHHHHHH-TTCCEE-EE------------------EEETTEEEEEEEEETTTSSSHHHHHHHHTTTCCEEEEE
T ss_pred cHHHHhHHHHHHHH-CCceee-cc------------------eecCCeEEEEEEecHHHHhhHHHHHHHhcCCceEEEEE
Confidence 99999999999976 334332 11 11234689999999999999999999999999999999
Q ss_pred ecccccCCcHHHHHHHHH
Q psy11837 168 FLCFKQVSSQNEAQAVRN 185 (192)
Q Consensus 168 ~~~y~~v~~~~~~~~~~~ 185 (192)
|+||++||++.+++|+++
T Consensus 673 f~~y~~~~~~~~~~i~~~ 690 (691)
T 1dar_A 673 FDHYQEVPKQVQEKLIKG 690 (691)
T ss_dssp EEEEEECCHHHHHHHHC-
T ss_pred eCcceECChhHHHHHHhc
Confidence 999999999999999854
No 13
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.80 E-value=8.5e-22 Score=179.88 Aligned_cols=139 Identities=9% Similarity=0.012 Sum_probs=111.3
Q ss_pred CChHHHHHHHHHHHHHHHHHcCceeeeeeEEEEEEecCCchhhHH-HHHh----hcCceeeeeeec-----CCeEEEEEe
Q psy11837 17 PRTYVILMCIATGASMALKEAGCILLEPYMYLEIISDEQYVHGIL-ADLS----RRRADIRSVEDR-----GSSKVIIAE 86 (192)
Q Consensus 17 ~~~~~~~~a~~~~~~~al~~ag~~l~EPv~~v~I~vp~~~~g~V~-~~l~----~rrg~i~~~~~~-----~~~~~i~~~ 86 (192)
.+|.+|++|+.+|+++|+++ | +.++|+.+++|++.++..|.+. ++.+ .++|...++..+ .|++.+++.
T Consensus 467 ~~~~~~~~av~~g~~~~~~~-G-l~g~pv~~v~v~l~dg~~h~~~s~~~~f~~a~~~a~~~a~~~a~p~LLEPi~~veI~ 544 (638)
T 3j25_A 467 YLNQSFQNAVMEGIRYGCEQ-G-LYGWNVTDCKICFKYGLYYSPVSTPADFRMLAPIVLEQVLKKAGTELLEPYLSFKIY 544 (638)
T ss_dssp STTHHHHHHHHHHHHHHHHS-S-SSCCCCCSCCCCCCCCCCSSCSCCSHHHHHHHHHHHHHHHHHHCCBCCCCCTTCEEE
T ss_pred cchhhhhhHHhhhHHHHHhc-c-ccCCcccceEEEEEECcccCCCCCHHHHHHHHHHHHHHHHHHCCCEEEcCcEEEEEE
Confidence 36789999999999999987 6 8999999999999988877763 2222 333333333332 579999999
Q ss_pred ecchhhcchhhhhhhhccceEEeeeeecceeecCchHHHHHHhcccCCCcceeccCchhhhhhhhhhhhhhccCceeEEE
Q psy11837 87 APLSELLGYCQRVRTLSSGRSHFSMEFLCFKQVSSQNEAQAVRNITGFDPVIIAEAPLSELLGYCQRVRTLSSGRSHFSM 166 (192)
Q Consensus 87 vP~~~~~~~~~~L~s~T~G~g~~~~~~~~y~~~p~~~~~~i~~~~~~~~~~i~a~~P~~~~~~y~~~lrs~T~G~g~~~~ 166 (192)
+|.++++++.++|.+ .||.+. +. +..++..+|+|++|++||++|+++|||+|+|+|+|+|
T Consensus 545 vP~~~~G~V~~~L~~---RRG~i~----~~-------------~~~~~~~~i~a~vP~~e~~gy~~~Lrs~T~G~a~~~~ 604 (638)
T 3j25_A 545 APQEYLSRAYNDAPK---YCANIV----DT-------------QLKNNEVILSGEIPARCIQEYRSDLTFFTNGRSVCLT 604 (638)
T ss_dssp EETTTHHHHHHHHHH---TTCCCC----CC-------------CCCTTEEEEECCCSSCCHHHHHHHHHHTTTTCCEEEC
T ss_pred ECHHHHHHHHHHHHh---CCcEEe----Ce-------------EecCCeEEEEEEECHHHhhCHHHHHHhhCCCcEEEEE
Confidence 999999999999966 344421 00 2235678999999999999999999999999999999
Q ss_pred EecccccCCcH
Q psy11837 167 EFLCFKQVSSQ 177 (192)
Q Consensus 167 ~~~~y~~v~~~ 177 (192)
+|+||++||.+
T Consensus 605 ~f~~y~~vpgd 615 (638)
T 3j25_A 605 ELKGYHVTTGE 615 (638)
T ss_dssp CCCCCCCCCSC
T ss_pred EECceEECCCC
Confidence 99999999974
No 14
>3e3x_A BIPA; MCSG,PSI2, structural genomics, protein struct initiative, midwest center for structural genomics, GTP-BIN nucleotide-binding; HET: MLZ MLY; 1.95A {Vibrio parahaemolyticus}
Probab=99.62 E-value=9.1e-16 Score=129.25 Aligned_cols=85 Identities=19% Similarity=0.261 Sum_probs=80.5
Q ss_pred eeeeeeEEEEEEecCCchhhHHHHHhhcCceeeeeeec-CCeEEEEEeecchhhcchhhhhhhhccceEEeeeeecceee
Q psy11837 40 ILLEPYMYLEIISDEQYVHGILADLSRRRADIRSVEDR-GSSKVIIAEAPLSELLGYCQRVRTLSSGRSHFSMEFLCFKQ 118 (192)
Q Consensus 40 ~l~EPv~~v~I~vp~~~~g~V~~~l~~rrg~i~~~~~~-~~~~~i~~~vP~~~~~~~~~~L~s~T~G~g~~~~~~~~y~~ 118 (192)
.++||++.++|.+|++++|.|+++|++|||.+.++... ++++.|++.+|++++++|..+|++.|+|+|.|++.|+||++
T Consensus 122 ~llEPi~~v~I~vPee~~G~Vm~~L~~RRG~i~~m~~~~~g~~~I~~~vPl~el~Gy~~eLrS~T~G~g~~~~~F~~Y~p 201 (332)
T 3e3x_A 122 QLMEPFETVTIDVMEEHQGGIMENIGLRXGELXDMAPDGKGRVRMDFIMPSRGLIGFQTEFMTLTSGSGLLYHTFDHYGP 201 (332)
T ss_dssp EEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEECSSSEEEEEEEEEHHHHTTHHHHHHHHTTTCCEEEEEEEEEEE
T ss_pred EEECcEEEEEEEECHHHHHHHHHHHHhhcccccCceECCCCeEEEEEEEChHHhhhHHHHhhhhCCCcEEEEEEecCceE
Confidence 68999999999999999999999999999999999886 46889999999999999999999999999999999999999
Q ss_pred c-CchHH
Q psy11837 119 V-SSQNE 124 (192)
Q Consensus 119 ~-p~~~~ 124 (192)
+ |++.+
T Consensus 202 ~~pg~i~ 208 (332)
T 3e3x_A 202 HXGGNIG 208 (332)
T ss_dssp CCCCSCS
T ss_pred cCCCccc
Confidence 9 88753
No 15
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.56 E-value=2.2e-15 Score=136.53 Aligned_cols=113 Identities=19% Similarity=0.316 Sum_probs=95.8
Q ss_pred ceeeeeeEEEEEEecCCchhhHHHHHhhcCceeeeeeecCCeEEEEEeecchhh-cchhhhhhhhccceEEeeeeeccee
Q psy11837 39 CILLEPYMYLEIISDEQYVHGILADLSRRRADIRSVEDRGSSKVIIAEAPLSEL-LGYCQRVRTLSSGRSHFSMEFLCFK 117 (192)
Q Consensus 39 ~~l~EPv~~v~I~vp~~~~g~V~~~l~~rrg~i~~~~~~~~~~~i~~~vP~~~~-~~~~~~L~s~T~G~g~~~~~~~~y~ 117 (192)
..++||++.++|.+|++|+|.|+++|+.|||.+.+++..+++..|++.+|++++ ++|..+|++.|+|+|+|+++|++|+
T Consensus 397 ~~llEP~~~~~i~~P~e~~G~v~~~~~~rrG~~~~~~~~~~~~~i~~~~P~~e~~~~~~~~l~s~T~G~~~~~~~~~~y~ 476 (599)
T 3cb4_D 397 YELREPIAECHMLLPQAYLGNVITLCVEKRGVQTNMVYHGNQVALTYEIPMAEVVLDFFDRLKSTSRGYASLDYNFKRFQ 476 (599)
T ss_dssp EEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEECCTTEEEEEEEEEHHHHHTTTHHHHHHHTTSCCEEEEEEEEEE
T ss_pred chhhccceEEEEEeCHHHHHHHHHHHHHcCcEEeCcEecCCeEEEEEEecHHHHHHHHHHhhhhcCCcEEEEEEEecCce
Confidence 479999999999999999999999999999999999988779999999999999 7999999999999999999999999
Q ss_pred ecCchHHHHHHhcccCCCcceeccCchhhhhhhhhhhhhhccCce
Q psy11837 118 QVSSQNEAQAVRNITGFDPVIIAEAPLSELLGYCQRVRTLSSGRS 162 (192)
Q Consensus 118 ~~p~~~~~~i~~~~~~~~~~i~a~~P~~~~~~y~~~lrs~T~G~g 162 (192)
++.- ...+..++++ |+..+....++-++...||.
T Consensus 477 ~~~~----------~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~~ 510 (599)
T 3cb4_D 477 ASDM----------VRVDVLINGE-RVDALALITHRDNSQNRGRE 510 (599)
T ss_dssp ECCE----------EEEEEEETTE-EEEEEEEEEEGGGHHHHHHH
T ss_pred Eecc----------cccccccCCc-EecccceeccHHHHHHHHHH
Confidence 8741 1123445555 66666666777666666664
No 16
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.56 E-value=3.6e-15 Score=135.10 Aligned_cols=113 Identities=19% Similarity=0.347 Sum_probs=97.8
Q ss_pred ceeeeeeEEEEEEecCCchhhHHHHHhhcCceeeeeeec-CCeEEEEEeecchhh-cchhhhhhhhccceEEeeeeecce
Q psy11837 39 CILLEPYMYLEIISDEQYVHGILADLSRRRADIRSVEDR-GSSKVIIAEAPLSEL-LGYCQRVRTLSSGRSHFSMEFLCF 116 (192)
Q Consensus 39 ~~l~EPv~~v~I~vp~~~~g~V~~~l~~rrg~i~~~~~~-~~~~~i~~~vP~~~~-~~~~~~L~s~T~G~g~~~~~~~~y 116 (192)
..++||++.++|.+|++++|+|+++|+.|||.+.+++.. +++..|++.+|++++ ++|..+|++.|+|+|+|+++|++|
T Consensus 401 ~~llEP~~~~~i~vP~e~~G~v~~~~~~rrG~~~~~~~~~~~~~~i~~~~P~~e~~~~~~~~L~s~T~G~g~~~~~f~~y 480 (600)
T 2ywe_A 401 EYVEEPFVLVTIITPKEYVGPIIQLCQEKRGIQKNMTYLDPNTVYLEYEMPLSEIIVDFHDKIKSISRGFASYDYEFIGY 480 (600)
T ss_dssp EEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEEETTEEEEEEEEEHHHHHHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred ccccCCeEEEEEEecHHHHHHHHHHHHHcCcEEeccEEcCCCEEEEEEEEcHHHHHhhHHHhhhhcCCCeEEEEEEeccc
Confidence 479999999999999999999999999999999999985 468999999999999 799999999999999999999999
Q ss_pred eecCchHHHHHHhcccCCCcceeccCchhhhhhhhhhhhhhccCce
Q psy11837 117 KQVSSQNEAQAVRNITGFDPVIIAEAPLSELLGYCQRVRTLSSGRS 162 (192)
Q Consensus 117 ~~~p~~~~~~i~~~~~~~~~~i~a~~P~~~~~~y~~~lrs~T~G~g 162 (192)
++++- ...+..++++ |+..+....++-++...||.
T Consensus 481 ~~~~~----------~~~~~~~ng~-~v~~~~~~~~~~~~~~~~~~ 515 (600)
T 2ywe_A 481 RPSDL----------IKLTVLINKK-PVDALSFIVHADRAQKFARR 515 (600)
T ss_dssp EECCE----------EEEEEEESSS-BCGGGCEEEEGGGHHHHHHH
T ss_pred eEccc----------cccccccCCC-EeccchhhhhhHHHHHHHHH
Confidence 98741 1224555666 77788777888777777765
No 17
>3e3x_A BIPA; MCSG,PSI2, structural genomics, protein struct initiative, midwest center for structural genomics, GTP-BIN nucleotide-binding; HET: MLZ MLY; 1.95A {Vibrio parahaemolyticus}
Probab=99.29 E-value=1.6e-12 Score=109.56 Aligned_cols=81 Identities=12% Similarity=0.060 Sum_probs=67.2
Q ss_pred CeEEEEEeecchhhcchhhhhhhhccceEEe-eeeecceeecCchHHHHHHhcccCCCcceeccCchhhhhhhhhhhhhh
Q psy11837 79 SSKVIIAEAPLSELLGYCQRVRTLSSGRSHF-SMEFLCFKQVSSQNEAQAVRNITGFDPVIIAEAPLSELLGYCQRVRTL 157 (192)
Q Consensus 79 ~~~~i~~~vP~~~~~~~~~~L~s~T~G~g~~-~~~~~~y~~~p~~~~~~i~~~~~~~~~~i~a~~P~~~~~~y~~~lrs~ 157 (192)
|++.+++.+|.++++++..+|... +|.+ .+.. ..++...|.+.+|+++|++|.++|||+
T Consensus 126 Pi~~v~I~vPee~~G~Vm~~L~~R---RG~i~~m~~-----------------~~~g~~~I~~~vPl~el~Gy~~eLrS~ 185 (332)
T 3e3x_A 126 PFETVTIDVMEEHQGGIMENIGLR---XGELXDMAP-----------------DGKGRVRMDFIMPSRGLIGFQTEFMTL 185 (332)
T ss_dssp EEEEEEEEEEGGGHHHHHHHHHHT---TCEEEEEEE-----------------CSSSEEEEEEEEEHHHHTTHHHHHHHH
T ss_pred cEEEEEEEECHHHHHHHHHHHHhh---cccccCceE-----------------CCCCeEEEEEEEChHHhhhHHHHhhhh
Confidence 688999999999999999999763 4442 1111 113457899999999999999999999
Q ss_pred ccCceeEEEEecccccC-CcHHH
Q psy11837 158 SSGRSHFSMEFLCFKQV-SSQNE 179 (192)
Q Consensus 158 T~G~g~~~~~~~~y~~v-~~~~~ 179 (192)
|+|+|+|+++|+||+|+ |++++
T Consensus 186 T~G~g~~~~~F~~Y~p~~pg~i~ 208 (332)
T 3e3x_A 186 TSGSGLLYHTFDHYGPHXGGNIG 208 (332)
T ss_dssp TTTCCEEEEEEEEEEECCCCSCS
T ss_pred CCCcEEEEEEecCceEcCCCccc
Confidence 99999999999999999 87654
No 18
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.14 E-value=1.3e-11 Score=111.83 Aligned_cols=77 Identities=17% Similarity=0.198 Sum_probs=64.4
Q ss_pred CCeEEEEEeecchhhcchhhhhhhhccceEEeeeeecceeecCchHHHHHHhcccCCCcceeccCchhhh-hhhhhhhhh
Q psy11837 78 GSSKVIIAEAPLSELLGYCQRVRTLSSGRSHFSMEFLCFKQVSSQNEAQAVRNITGFDPVIIAEAPLSEL-LGYCQRVRT 156 (192)
Q Consensus 78 ~~~~~i~~~vP~~~~~~~~~~L~s~T~G~g~~~~~~~~y~~~p~~~~~~i~~~~~~~~~~i~a~~P~~~~-~~y~~~lrs 156 (192)
.|++.+++.+|.+++++++.+|.+ .||.+. +.+ ..+++..+.+++|++|| ++|.++|||
T Consensus 401 EP~~~~~i~~P~e~~G~v~~~~~~---rrG~~~----~~~-------------~~~~~~~i~~~~P~~e~~~~~~~~l~s 460 (599)
T 3cb4_D 401 EPIAECHMLLPQAYLGNVITLCVE---KRGVQT----NMV-------------YHGNQVALTYEIPMAEVVLDFFDRLKS 460 (599)
T ss_dssp EEEEEEEEEEEGGGHHHHHHHHHH---TTCEEE----EEE-------------CCTTEEEEEEEEEHHHHHTTTHHHHHH
T ss_pred ccceEEEEEeCHHHHHHHHHHHHH---cCcEEe----CcE-------------ecCCeEEEEEEecHHHHHHHHHHhhhh
Confidence 468999999999999999999976 344421 111 11336899999999999 799999999
Q ss_pred hccCceeEEEEecccccC
Q psy11837 157 LSSGRSHFSMEFLCFKQV 174 (192)
Q Consensus 157 ~T~G~g~~~~~~~~y~~v 174 (192)
+|+|+|+|+++|+||+|+
T Consensus 461 ~T~G~~~~~~~~~~y~~~ 478 (599)
T 3cb4_D 461 TSRGYASLDYNFKRFQAS 478 (599)
T ss_dssp HTTSCCEEEEEEEEEEEC
T ss_pred cCCcEEEEEEEecCceEe
Confidence 999999999999999998
No 19
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.13 E-value=3.7e-11 Score=108.84 Aligned_cols=78 Identities=15% Similarity=0.246 Sum_probs=64.6
Q ss_pred CCeEEEEEeecchhhcchhhhhhhhccceEEeeeeecceeecCchHHHHHHhcccCCCcceeccCchhhh-hhhhhhhhh
Q psy11837 78 GSSKVIIAEAPLSELLGYCQRVRTLSSGRSHFSMEFLCFKQVSSQNEAQAVRNITGFDPVIIAEAPLSEL-LGYCQRVRT 156 (192)
Q Consensus 78 ~~~~~i~~~vP~~~~~~~~~~L~s~T~G~g~~~~~~~~y~~~p~~~~~~i~~~~~~~~~~i~a~~P~~~~-~~y~~~lrs 156 (192)
.|++.+++.+|.+++++++.+|.+. ||.+. +.++ ..+++..+.+++|++|| ++|.++|||
T Consensus 405 EP~~~~~i~vP~e~~G~v~~~~~~r---rG~~~----~~~~------------~~~~~~~i~~~~P~~e~~~~~~~~L~s 465 (600)
T 2ywe_A 405 EPFVLVTIITPKEYVGPIIQLCQEK---RGIQK----NMTY------------LDPNTVYLEYEMPLSEIIVDFHDKIKS 465 (600)
T ss_dssp EEEEEEEEEEEGGGHHHHHHHHHHT---TCEEE----EEEE------------EETTEEEEEEEEEHHHHHHHHHHHHHH
T ss_pred CCeEEEEEEecHHHHHHHHHHHHHc---CcEEe----ccEE------------cCCCEEEEEEEEcHHHHHhhHHHhhhh
Confidence 4689999999999999999999763 44421 1111 11346899999999999 899999999
Q ss_pred hccCceeEEEEecccccC
Q psy11837 157 LSSGRSHFSMEFLCFKQV 174 (192)
Q Consensus 157 ~T~G~g~~~~~~~~y~~v 174 (192)
+|+|+|+|+++|+||+++
T Consensus 466 ~T~G~g~~~~~f~~y~~~ 483 (600)
T 2ywe_A 466 ISRGFASYDYEFIGYRPS 483 (600)
T ss_dssp HHTTCCEEEEEEEEEEEC
T ss_pred cCCCeEEEEEEeccceEc
Confidence 999999999999999998
No 20
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=98.35 E-value=3.7e-07 Score=85.69 Aligned_cols=41 Identities=22% Similarity=0.405 Sum_probs=23.7
Q ss_pred EEEEeecchhhcchhhhhhhhccceEEeeeeecceeecCch
Q psy11837 82 VIIAEAPLSELLGYCQRVRTLSSGRSHFSMEFLCFKQVSSQ 122 (192)
Q Consensus 82 ~i~~~vP~~~~~~~~~~L~s~T~G~g~~~~~~~~y~~~p~~ 122 (192)
.|++.+|++++++|..+||+.|+|+|.+++.|+||+++|++
T Consensus 767 ~I~a~vP~aE~fgy~~~LRs~T~G~g~~~~~F~~y~~vp~~ 807 (842)
T 1n0u_A 767 TVKAYLPVNESFGFTGELRQATGGQAFPQMVFDHWSTLGSD 807 (842)
T ss_dssp EEEEEEEGGGCTTHHHHHHHHTTTCCEEEEEEEEEEECCSC
T ss_pred EEEEEcChHHhhhhHHHHHhhCCCCceEEEEeccceeCCCC
Confidence 45555555555555555555555555555555555555554
No 21
>2cve_A Hypothetical protein TTHA1053; COG1739, UPF0029, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: TLA; 1.60A {Thermus thermophilus} SCOP: d.14.1.11 d.58.11.2
Probab=97.57 E-value=0.0006 Score=52.95 Aligned_cols=89 Identities=16% Similarity=0.042 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHHHHcCceeeeeeEEEEEEecCCchhhHHHHHhhcCceeeeeeecCCeEEEEEeecchhhcchhhhh
Q psy11837 20 YVILMCIATGASMALKEAGCILLEPYMYLEIISDEQYVHGILADLSRRRADIRSVEDRGSSKVIIAEAPLSELLGYCQRV 99 (192)
Q Consensus 20 ~~~~~a~~~~~~~al~~ag~~l~EPv~~v~I~vp~~~~g~V~~~l~~rrg~i~~~~~~~~~~~i~~~vP~~~~~~~~~~L 99 (192)
..|+.|...+.++||+.++..-..+...+.|.++...++.+.+.|.... .+.+....+.-+.+.+.+|..+.-.|...|
T Consensus 102 ggLvraY~~~a~~al~~~~~~~~~~~~~~~~~~~Y~~~~~v~~~l~~~~-~i~~~~y~~~gV~~~~~v~~~~~~~~~~~l 180 (191)
T 2cve_A 102 GGLVRAYGGVAAEALRRAPKVPLVERVGLAFLVPFAEVGRVYALLEARA-LKAEETYTPEGVRFALLLPKPEREGFLRAL 180 (191)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEECCCEEEEEEEECGGGHHHHHHHHHHTT-CCEEEEEETTEEEEEEEEEHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhCCcEEEeeeeEEEEEEchhhHHHHHHHHHHcC-ceeccEEcCCeEEEEEEECHHHHHHHHHHH
Confidence 4588999999999999999999999999999999999999999999888 887776654337889999999999999999
Q ss_pred hhhccceEEe
Q psy11837 100 RTLSSGRSHF 109 (192)
Q Consensus 100 ~s~T~G~g~~ 109 (192)
...|+|++.+
T Consensus 181 ~~~t~G~~~~ 190 (191)
T 2cve_A 181 LDATRGQVAL 190 (191)
T ss_dssp HHHTTTCCEE
T ss_pred HHHhCCeEEe
Confidence 9999998764
No 22
>1vi7_A Hypothetical protein YIGZ; structural genomics, unknown function; 2.80A {Escherichia coli} SCOP: d.14.1.11 d.58.11.2
Probab=97.52 E-value=0.00052 Score=54.30 Aligned_cols=89 Identities=13% Similarity=0.188 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHHHHHcCceeeeeeEEEEEEecCCchhhHHHHHhhcCceeeeeeecCCeEEEEEeecchhhcchhhhh
Q psy11837 20 YVILMCIATGASMALKEAGCILLEPYMYLEIISDEQYVHGILADLSRRRADIRSVEDRGSSKVIIAEAPLSELLGYCQRV 99 (192)
Q Consensus 20 ~~~~~a~~~~~~~al~~ag~~l~EPv~~v~I~vp~~~~g~V~~~l~~rrg~i~~~~~~~~~~~i~~~vP~~~~~~~~~~L 99 (192)
..+..|...+.++||+.++..-..+...+.|.++....+.|...|....+.+.+.... +.+.+.+.+|..+.-.|...|
T Consensus 114 ggLvraY~~aa~~aL~~~~~v~~~~~~~~~i~~~Y~~~~~v~~~l~~~~~~i~~~~y~-~~V~~~l~v~~~~~~~~~~~l 192 (217)
T 1vi7_A 114 GGLVKAYGGGVNQALRQLTTQRKTPLTEYTLQCEYHQLTGIEALLGQCDGKIINSDYQ-AFVLLRVALPAAKVAEFSAKL 192 (217)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEECCCEEEEEEECTTTHHHHHHHHHHTTCEEEEEEES-SSEEEEEEECSSTHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhCCeEEEeeeeEEEEEEccchHHHHHHHHHHCCCEEEceEec-CCEEEEEEECHHHHHHHHHHH
Confidence 4588999999999999999999999999999999999999999999999998877765 357889999999999999999
Q ss_pred hhhccceEEe
Q psy11837 100 RTLSSGRSHF 109 (192)
Q Consensus 100 ~s~T~G~g~~ 109 (192)
..+|+|++.+
T Consensus 193 ~~~t~G~~~~ 202 (217)
T 1vi7_A 193 ADFSRGSLQL 202 (217)
T ss_dssp HHHHTTCCCC
T ss_pred HHHhCCeEEE
Confidence 9999999864
No 23
>3lh2_S 4E10_1VI7A_S0_002_N (T88); epitope-scaffold, immune system; 2.65A {Artificial gene}
Probab=96.56 E-value=0.0025 Score=41.77 Aligned_cols=64 Identities=13% Similarity=0.184 Sum_probs=53.6
Q ss_pred eEEEEEEecCCchhhHHHHHhhcCceeeeeeecCCeEEEEEeecchhhcchhhhhhhhccceEEe
Q psy11837 45 YMYLEIISDEQYVHGILADLSRRRADIRSVEDRGSSKVIIAEAPLSELLGYCQRVRTLSSGRSHF 109 (192)
Q Consensus 45 v~~v~I~vp~~~~g~V~~~l~~rrg~i~~~~~~~~~~~i~~~vP~~~~~~~~~~L~s~T~G~g~~ 109 (192)
+....+.++....+.|...|....+.|.+..... .+.+.+.+|.+..-.|...|..+|+|++.+
T Consensus 7 ~~~~~l~~dY~~~g~v~~~L~~~~~~I~~~~Y~~-~V~l~v~vp~~~~~~~~~~L~d~t~G~~~~ 70 (76)
T 3lh2_S 7 LTEYTLQANWFDITGILWLLGQVDGKIINSDVQA-FVLLRVALPAAKVAEFSAKLADFSGGSLQL 70 (76)
T ss_dssp CEEEEEEECHHHHHHHHHHHHHTTCEEEEEEEEE-EEEEEEEECC-CC-CHHHHHHHHHTTCCCB
T ss_pred ceeEEEEEcccCHHHHHHHHHHCCCEEEcccccC-eEEEEEEECHHHHHHHHHHHHHHhCCEEEE
Confidence 3456788888899999999999999998877643 488999999999999999999999998764
No 24
>2wbm_A MTHSBDS, ribosome maturation protein SDO1 homolog; shwachman-bodian-diamond syndrome protein; 1.75A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=87.65 E-value=1.4 Score=35.38 Aligned_cols=67 Identities=15% Similarity=0.108 Sum_probs=50.4
Q ss_pred eeeEEEEEEecCCchhhHHHHHhhcCceeeeeeec-CCeEEEEEeecchhhcchhhhhhhhccceEEee
Q psy11837 43 EPYMYLEIISDEQYVHGILADLSRRRADIRSVEDR-GSSKVIIAEAPLSELLGYCQRVRTLSSGRSHFS 110 (192)
Q Consensus 43 EPv~~v~I~vp~~~~g~V~~~l~~rrg~i~~~~~~-~~~~~i~~~vP~~~~~~~~~~L~s~T~G~g~~~ 110 (192)
.--+.+.|.+|.++.+.+...|... |.+..-+.. ++.+.+.+.+|....-+|...|+..|+|+|.+.
T Consensus 182 ra~m~l~v~ip~~~~~~~~~~l~~~-~~v~~ee~~~dgs~~~v~~i~pg~~~~~~~~v~~~tkG~~~~~ 249 (252)
T 2wbm_A 182 FEKVRVAIKIPGEMAGSAYGVISNF-GKITNEEWQNDGSWIAVVEIPGGLQDSFYQKLSELTGGNVETR 249 (252)
T ss_dssp ECEEEEEEEECGGGHHHHHHHHHHH-CEEEEEEECTTSCEEEEEEEEGGGHHHHHHHHHHHTTTCCEEE
T ss_pred EeeEEEEEEEcHHHHHHHHHHHHhh-CeeeeecccCCCcEEEEEEECCccHHHHHHHHHHhcCCeEEEE
Confidence 3456788999999999988877544 555443333 345667788999888889999999999998854
No 25
>1t95_A Hypothetical protein AF0491; shwachman-bodian-diamond syndrome protein orthologue, unknown function; 1.90A {Archaeoglobus fulgidus} SCOP: a.5.8.1 d.235.1.2 d.58.11.3 PDB: 1p9q_C
Probab=87.20 E-value=1.4 Score=35.03 Aligned_cols=66 Identities=11% Similarity=0.043 Sum_probs=49.4
Q ss_pred eeEEEEEEecCCchhhHHHHHhhcCceeeeeeecC-CeEEEEEeecchhhcchhhhhhhhccceEEee
Q psy11837 44 PYMYLEIISDEQYVHGILADLSRRRADIRSVEDRG-SSKVIIAEAPLSELLGYCQRVRTLSSGRSHFS 110 (192)
Q Consensus 44 Pv~~v~I~vp~~~~g~V~~~l~~rrg~i~~~~~~~-~~~~i~~~vP~~~~~~~~~~L~s~T~G~g~~~ 110 (192)
--+.+.|.+|.++.+.+...|... |.+..-+..+ +.+...+.+|....-.|...|+..|+|++.+.
T Consensus 168 a~m~~~v~vp~~~~~~~~~~l~~~-~~v~~ee~~~dgs~~~v~~Ippg~~~~~~~~l~~~tkG~~~~~ 234 (240)
T 1t95_A 168 EEMEIAIKIPPEHTGRAISALYNF-GGVTREEWQRDGSWICVMRIPSGMYGDLMDLLGKVAKGEALTK 234 (240)
T ss_dssp CEEEEEEEECGGGHHHHHHHHHHH-CCEEEEEECTTSCEEEEEEEEGGGHHHHHHHHHHHHTTCCEEE
T ss_pred eEEEEEEEEcHHHHHHHHHHHHhh-CeeeeecccCCCcEEEEEEECCccHHHHHHHHHHhcCCeEEEE
Confidence 346688999999989988888543 4554444333 45667788999888889999999999998854
No 26
>2kdo_A Ribosome maturation protein SBDS; SBDS protein, protein structure, RNA-interacting protein mutation, phosphoprotein, ribosome biogenesis; NMR {Homo sapiens} PDB: 2l9n_A
Probab=83.94 E-value=0.27 Score=39.59 Aligned_cols=68 Identities=12% Similarity=0.033 Sum_probs=52.4
Q ss_pred eeeEEEEEEecCCchhhHHHHHhhcCceeeeeeecCCeEEEEEeecchhhcchhhhhhhhccceEEeee
Q psy11837 43 EPYMYLEIISDEQYVHGILADLSRRRADIRSVEDRGSSKVIIAEAPLSELLGYCQRVRTLSSGRSHFSM 111 (192)
Q Consensus 43 EPv~~v~I~vp~~~~g~V~~~l~~rrg~i~~~~~~~~~~~i~~~vP~~~~~~~~~~L~s~T~G~g~~~~ 111 (192)
..-+.+.|++|.++.+.+...|....|.+..-+..++ +.+.+.+|....-.|...|+..|+|.|.+..
T Consensus 171 ra~m~l~v~vp~~~~~~~~~~l~~~~~~v~~ee~~~~-~~~v~~I~pg~~~~~~~~v~~~tkG~~~~ev 238 (252)
T 2kdo_A 171 RAHMRLRFILPVNEGKKLKEKLKPLIKVIESEDYGQQ-LEIVCLIDPGCFREIDELIKKETKGKGSLEV 238 (252)
T ss_dssp EECCCEEEECBHHHHHHHTTTHHHHTCEEEEECCSSB-CCEEECCCGGGHHHHHHHHHHHTTTTSEEEE
T ss_pred eeeEEEEEEEcHHHHHHHHHHHHHhhCcceeeeccCC-eEEEEEECCcchHHHHHHHHHhcCCCEEEEE
Confidence 3346688999988888887777766677765544455 6778899999888999999999999998543
No 27
>3lh2_S 4E10_1VI7A_S0_002_N (T88); epitope-scaffold, immune system; 2.65A {Artificial gene}
Probab=70.35 E-value=3.3 Score=26.40 Aligned_cols=62 Identities=10% Similarity=0.182 Sum_probs=41.8
Q ss_pred EEEEeecchhhcchhhhhhhhccceEEeeeeecceeecCchHHHHHHhcccCCCcceeccCchhhhhhhhhhhhhhccCc
Q psy11837 82 VIIAEAPLSELLGYCQRVRTLSSGRSHFSMEFLCFKQVSSQNEAQAVRNITGFDPVIIAEAPLSELLGYCQRVRTLSSGR 161 (192)
Q Consensus 82 ~i~~~vP~~~~~~~~~~L~s~T~G~g~~~~~~~~y~~~p~~~~~~i~~~~~~~~~~i~a~~P~~~~~~y~~~lrs~T~G~ 161 (192)
...+.+|-+.++.+...|+.. ++. ..+.+| +....+...+|.++...+...|..+|+|+
T Consensus 9 ~~~l~~dY~~~g~v~~~L~~~-~~~-I~~~~Y-------------------~~~V~l~v~vp~~~~~~~~~~L~d~t~G~ 67 (76)
T 3lh2_S 9 EYTLQANWFDITGILWLLGQV-DGK-IINSDV-------------------QAFVLLRVALPAAKVAEFSAKLADFSGGS 67 (76)
T ss_dssp EEEEEECHHHHHHHHHHHHHT-TCE-EEEEEE-------------------EEEEEEEEEECC-CC-CHHHHHHHHHTTC
T ss_pred eEEEEEcccCHHHHHHHHHHC-CCE-EEcccc-------------------cCeEEEEEEECHHHHHHHHHHHHHHhCCE
Confidence 456677777787777777652 222 222222 22466777889999999999999999999
Q ss_pred eeE
Q psy11837 162 SHF 164 (192)
Q Consensus 162 g~~ 164 (192)
..+
T Consensus 68 ~~~ 70 (76)
T 3lh2_S 68 LQL 70 (76)
T ss_dssp CCB
T ss_pred EEE
Confidence 866
No 28
>2wbm_A MTHSBDS, ribosome maturation protein SDO1 homolog; shwachman-bodian-diamond syndrome protein; 1.75A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=46.07 E-value=36 Score=27.09 Aligned_cols=67 Identities=10% Similarity=0.084 Sum_probs=45.7
Q ss_pred eEEEEEeecchhhcchhhhhhhhccceEEeeeeecceeecCchHHHHHHhcccCCCcceeccCchhhhhhhhhhhhhhcc
Q psy11837 80 SKVIIAEAPLSELLGYCQRVRTLSSGRSHFSMEFLCFKQVSSQNEAQAVRNITGFDPVIIAEAPLSELLGYCQRVRTLSS 159 (192)
Q Consensus 80 ~~~i~~~vP~~~~~~~~~~L~s~T~G~g~~~~~~~~y~~~p~~~~~~i~~~~~~~~~~i~a~~P~~~~~~y~~~lrs~T~ 159 (192)
.|.+.+.+|.++...+...|... |... -..|+ .++.-....++|-.--..+...|+..|+
T Consensus 184 ~m~l~v~ip~~~~~~~~~~l~~~--~~v~----~ee~~--------------~dgs~~~v~~i~pg~~~~~~~~v~~~tk 243 (252)
T 2wbm_A 184 KVRVAIKIPGEMAGSAYGVISNF--GKIT----NEEWQ--------------NDGSWIAVVEIPGGLQDSFYQKLSELTG 243 (252)
T ss_dssp EEEEEEEECGGGHHHHHHHHHHH--CEEE----EEEEC--------------TTSCEEEEEEEEGGGHHHHHHHHHHHTT
T ss_pred eEEEEEEEcHHHHHHHHHHHHhh--Ceee----eeccc--------------CCCcEEEEEEECCccHHHHHHHHHHhcC
Confidence 68999999999988888888654 2221 11121 1122344566787777788888999999
Q ss_pred CceeEEE
Q psy11837 160 GRSHFSM 166 (192)
Q Consensus 160 G~g~~~~ 166 (192)
|+|....
T Consensus 244 G~~~~~v 250 (252)
T 2wbm_A 244 GNVETRL 250 (252)
T ss_dssp TCCEEEE
T ss_pred CeEEEEE
Confidence 9997643
No 29
>1t95_A Hypothetical protein AF0491; shwachman-bodian-diamond syndrome protein orthologue, unknown function; 1.90A {Archaeoglobus fulgidus} SCOP: a.5.8.1 d.235.1.2 d.58.11.3 PDB: 1p9q_C
Probab=44.28 E-value=50 Score=26.04 Aligned_cols=67 Identities=7% Similarity=-0.001 Sum_probs=45.8
Q ss_pred eEEEEEeecchhhcchhhhhhhhccceEEeeeeecceeecCchHHHHHHhcccCCCcceeccCchhhhhhhhhhhhhhcc
Q psy11837 80 SKVIIAEAPLSELLGYCQRVRTLSSGRSHFSMEFLCFKQVSSQNEAQAVRNITGFDPVIIAEAPLSELLGYCQRVRTLSS 159 (192)
Q Consensus 80 ~~~i~~~vP~~~~~~~~~~L~s~T~G~g~~~~~~~~y~~~p~~~~~~i~~~~~~~~~~i~a~~P~~~~~~y~~~lrs~T~ 159 (192)
.|.+.+.+|..+...+...|... |... -..|+ ..+.-....++|-.--..+...|+..|+
T Consensus 169 ~m~~~v~vp~~~~~~~~~~l~~~--~~v~----~ee~~--------------~dgs~~~v~~Ippg~~~~~~~~l~~~tk 228 (240)
T 1t95_A 169 EMEIAIKIPPEHTGRAISALYNF--GGVT----REEWQ--------------RDGSWICVMRIPSGMYGDLMDLLGKVAK 228 (240)
T ss_dssp EEEEEEEECGGGHHHHHHHHHHH--CCEE----EEEEC--------------TTSCEEEEEEEEGGGHHHHHHHHHHHHT
T ss_pred EEEEEEEEcHHHHHHHHHHHHhh--Ceee----eeccc--------------CCCcEEEEEEECCccHHHHHHHHHHhcC
Confidence 68999999999998888888654 2211 11221 1122334566787777788888999999
Q ss_pred CceeEEE
Q psy11837 160 GRSHFSM 166 (192)
Q Consensus 160 G~g~~~~ 166 (192)
|+|....
T Consensus 229 G~~~~~v 235 (240)
T 1t95_A 229 GEALTKV 235 (240)
T ss_dssp TCCEEEE
T ss_pred CeEEEEE
Confidence 9998754
No 30
>2kdo_A Ribosome maturation protein SBDS; SBDS protein, protein structure, RNA-interacting protein mutation, phosphoprotein, ribosome biogenesis; NMR {Homo sapiens} PDB: 2l9n_A
Probab=39.69 E-value=39 Score=26.92 Aligned_cols=66 Identities=8% Similarity=-0.002 Sum_probs=46.7
Q ss_pred eEEEEEeecchhhcchhhhhhhhccceEEeeeeecceeecCchHHHHHHhcccCCCcceeccCchhhhhhhhhhhhhhcc
Q psy11837 80 SKVIIAEAPLSELLGYCQRVRTLSSGRSHFSMEFLCFKQVSSQNEAQAVRNITGFDPVIIAEAPLSELLGYCQRVRTLSS 159 (192)
Q Consensus 80 ~~~i~~~vP~~~~~~~~~~L~s~T~G~g~~~~~~~~y~~~p~~~~~~i~~~~~~~~~~i~a~~P~~~~~~y~~~lrs~T~ 159 (192)
.|.+.+.+|..+...+...|+... |... -..|. ++ -.+..++|-..-..+...|+..|+
T Consensus 173 ~m~l~v~vp~~~~~~~~~~l~~~~-~~v~----~ee~~---------------~~-~~~v~~I~pg~~~~~~~~v~~~tk 231 (252)
T 2kdo_A 173 HMRLRFILPVNEGKKLKEKLKPLI-KVIE----SEDYG---------------QQ-LEIVCLIDPGCFREIDELIKKETK 231 (252)
T ss_dssp CCCEEEECBHHHHHHHTTTHHHHT-CEEE----EECCS---------------SB-CCEEECCCGGGHHHHHHHHHHHTT
T ss_pred eEEEEEEEcHHHHHHHHHHHHHhh-Ccce----eeecc---------------CC-eEEEEEECCcchHHHHHHHHHhcC
Confidence 578999999999888777787642 2221 11121 22 455677888888888999999999
Q ss_pred CceeEEE
Q psy11837 160 GRSHFSM 166 (192)
Q Consensus 160 G~g~~~~ 166 (192)
|+|...+
T Consensus 232 G~~~~ev 238 (252)
T 2kdo_A 232 GKGSLEV 238 (252)
T ss_dssp TTSEEEE
T ss_pred CCEEEEE
Confidence 9998654
No 31
>2cve_A Hypothetical protein TTHA1053; COG1739, UPF0029, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: TLA; 1.60A {Thermus thermophilus} SCOP: d.14.1.11 d.58.11.2
Probab=39.67 E-value=43 Score=25.46 Aligned_cols=63 Identities=10% Similarity=0.064 Sum_probs=46.9
Q ss_pred eEEEEEeecchhhcchhhhhhhhccceEEeeeeecceeecCchHHHHHHhcccCCC-cceeccCchhhhhhhhhhhhhhc
Q psy11837 80 SKVIIAEAPLSELLGYCQRVRTLSSGRSHFSMEFLCFKQVSSQNEAQAVRNITGFD-PVIIAEAPLSELLGYCQRVRTLS 158 (192)
Q Consensus 80 ~~~i~~~vP~~~~~~~~~~L~s~T~G~g~~~~~~~~y~~~p~~~~~~i~~~~~~~~-~~i~a~~P~~~~~~y~~~lrs~T 158 (192)
...+.+.+|-..++.+...|+.. + -....+| ... ..+...+|..+...+...|..+|
T Consensus 127 ~~~~~~~~~Y~~~~~v~~~l~~~--~-~i~~~~y-------------------~~~gV~~~~~v~~~~~~~~~~~l~~~t 184 (191)
T 2cve_A 127 RVGLAFLVPFAEVGRVYALLEAR--A-LKAEETY-------------------TPEGVRFALLLPKPEREGFLRALLDAT 184 (191)
T ss_dssp EEEEEEEECGGGHHHHHHHHHHT--T-CCEEEEE-------------------ETTEEEEEEEEEHHHHHHHHHHHHHHT
T ss_pred eeEEEEEEchhhHHHHHHHHHHc--C-ceeccEE-------------------cCCeEEEEEEECHHHHHHHHHHHHHHh
Confidence 56788999999999988888764 2 2222222 122 56677889999999999999999
Q ss_pred cCceeE
Q psy11837 159 SGRSHF 164 (192)
Q Consensus 159 ~G~g~~ 164 (192)
+|+..+
T Consensus 185 ~G~~~~ 190 (191)
T 2cve_A 185 RGQVAL 190 (191)
T ss_dssp TTCCEE
T ss_pred CCeEEe
Confidence 999865
No 32
>2vd3_A ATP phosphoribosyltransferase; metal-binding, glycosyltransferase, HISG, histidine, magnesi transferase; HET: HIS; 2.45A {Methanobacterium thermoautotrophicum}
Probab=37.17 E-value=56 Score=26.50 Aligned_cols=65 Identities=11% Similarity=0.126 Sum_probs=48.8
Q ss_pred eeEEEEEEecCCchhhHHHHHhhcCc-eeeeeeecCCeEEEEEeecchhhcchhhhhhhhccceEEe
Q psy11837 44 PYMYLEIISDEQYVHGILADLSRRRA-DIRSVEDRGSSKVIIAEAPLSELLGYCQRVRTLSSGRSHF 109 (192)
Q Consensus 44 Pv~~v~I~vp~~~~g~V~~~l~~rrg-~i~~~~~~~~~~~i~~~vP~~~~~~~~~~L~s~T~G~g~~ 109 (192)
-+..+...+|.+.+..+.+.+...++ ++..+...++|+.|++.+|...+.+.+..|+.. ++++.+
T Consensus 215 ~~~~~~~n~p~~~l~~v~~~lPg~~~PTV~~l~~~~~w~aV~~vv~~~~~~~~~~~Lk~~-GA~~Il 280 (289)
T 2vd3_A 215 GKRLVMLNIDRKNLDRVRALMPGMTGPTVSEVLSDNGVVAVHAVVDEKEVFNLINRLKAV-GARDIL 280 (289)
T ss_dssp TEEEEEEEEEGGGHHHHHHHCCCSSSCEEEECCSSSCEEEEEEEEETTTHHHHHHHHHTT-TCEEEE
T ss_pred cEEEEEEeCCHHHHHHHHHhcccCCCCceecccCCCCEEEEEEEEcHHHHHHHHHHHHHc-CCCeEE
Confidence 45667888898888888888866554 655553456699999999999999999999874 445543
No 33
>1vi7_A Hypothetical protein YIGZ; structural genomics, unknown function; 2.80A {Escherichia coli} SCOP: d.14.1.11 d.58.11.2
Probab=32.17 E-value=57 Score=25.31 Aligned_cols=65 Identities=9% Similarity=0.174 Sum_probs=46.7
Q ss_pred eEEEEEeecchhhcchhhhhhhhccceEEeeeeecceeecCchHHHHHHhcccCCCcceeccCchhhhhhhhhhhhhhcc
Q psy11837 80 SKVIIAEAPLSELLGYCQRVRTLSSGRSHFSMEFLCFKQVSSQNEAQAVRNITGFDPVIIAEAPLSELLGYCQRVRTLSS 159 (192)
Q Consensus 80 ~~~i~~~vP~~~~~~~~~~L~s~T~G~g~~~~~~~~y~~~p~~~~~~i~~~~~~~~~~i~a~~P~~~~~~y~~~lrs~T~ 159 (192)
...+.+.+|-..++.+...|+.. ++. ..+.+| .....+...+|..+...|...|..+|+
T Consensus 139 ~~~~~i~~~Y~~~~~v~~~l~~~-~~~-i~~~~y-------------------~~~V~~~l~v~~~~~~~~~~~l~~~t~ 197 (217)
T 1vi7_A 139 LTEYTLQCEYHQLTGIEALLGQC-DGK-IINSDY-------------------QAFVLLRVALPAAKVAEFSAKLADFSR 197 (217)
T ss_dssp CEEEEEEECTTTHHHHHHHHHHT-TCE-EEEEEE-------------------SSSEEEEEEECSSTHHHHHHHHHHHHT
T ss_pred eeEEEEEEccchHHHHHHHHHHC-CCE-EEceEe-------------------cCCEEEEEEECHHHHHHHHHHHHHHhC
Confidence 56788889999888888888653 122 112222 224566777888999999999999999
Q ss_pred CceeEE
Q psy11837 160 GRSHFS 165 (192)
Q Consensus 160 G~g~~~ 165 (192)
|+..+.
T Consensus 198 G~~~~~ 203 (217)
T 1vi7_A 198 GSLQLL 203 (217)
T ss_dssp TCCCCE
T ss_pred CeEEEE
Confidence 998764
No 34
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=30.75 E-value=12 Score=21.77 Aligned_cols=21 Identities=14% Similarity=0.191 Sum_probs=16.9
Q ss_pred ecccccCCcHHHHHHHHHhCC
Q psy11837 168 FLCFKQVSSQNEAQAVRNITG 188 (192)
Q Consensus 168 ~~~y~~v~~~~~~~~~~~~~~ 188 (192)
..=|..+|.++|++|+..++.
T Consensus 18 ~eVF~~LP~dIQ~Ells~~~~ 38 (48)
T 2kwv_A 18 QEVFKQLPADIQEEILSGKSR 38 (48)
T ss_dssp GGGTTTSCHHHHHHHTTCCCS
T ss_pred HHHHHHCcHHHHHHHHhcchH
Confidence 345778999999999987764
No 35
>2khu_A Immunoglobulin G-binding protein G, DNA polymerase IOTA; UBM, ubiquitin-binding domain, translesion synthesis, TLS, ubiquitin-binding protein; NMR {Streptococcus SP} PDB: 2khw_A 2l0f_B*
Probab=30.40 E-value=20 Score=24.34 Aligned_cols=18 Identities=6% Similarity=0.165 Sum_probs=15.7
Q ss_pred ccccCCcHHHHHHHHHhC
Q psy11837 170 CFKQVSSQNEAQAVRNIT 187 (192)
Q Consensus 170 ~y~~v~~~~~~~~~~~~~ 187 (192)
=|-++|.++|+.|+++||
T Consensus 72 VFyeLP~eVQ~ELla~Wr 89 (108)
T 2khu_A 72 VFYELPEAVQKELLAEWK 89 (108)
T ss_dssp HHTTSCHHHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHH
Confidence 346899999999999987
No 36
>1nh8_A ATP phosphoribosyltransferase; prtase, de novo His biosynthesis, PRPP, structural genomics, PSI, protei structure initiative; HET: AMP HIS; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: c.94.1.1 d.58.5.3 PDB: 1nh7_A*
Probab=29.25 E-value=93 Score=25.40 Aligned_cols=79 Identities=10% Similarity=0.071 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHcCceeeeeeEEEEEEecCCchhhHHHHHhhcCc-eeeeeeecCCeEEEEEeecchhhcchhhhhh
Q psy11837 22 ILMCIATGASMALKEAGCILLEPYMYLEIISDEQYVHGILADLSRRRA-DIRSVEDRGSSKVIIAEAPLSELLGYCQRVR 100 (192)
Q Consensus 22 ~~~a~~~~~~~al~~ag~~l~EPv~~v~I~vp~~~~g~V~~~l~~rrg-~i~~~~~~~~~~~i~~~vP~~~~~~~~~~L~ 100 (192)
.+..+..-++.++.. .-+..+...+|.+.+..+...+...++ ++..+ ..++|+.|.+.+|...+.+++..|+
T Consensus 215 ~i~~l~~rl~~vl~A------~~~~~l~~nvp~~~l~~v~~~lPg~~~PTVspL-~~~~wvAV~~vv~~~~~~~~~~~Lk 287 (304)
T 1nh8_A 215 ARDQLVARVQGVVFG------QQYLMLDYDCPRSALKKATAITPGLESPTIAPL-ADPDWVAIRALVPRRDVNGIMDELA 287 (304)
T ss_dssp HHHHHHHHHHHHHHH------TTEEEEEEEEEGGGHHHHHHHCCCSSSCEEEEC-SSTTEEEEEEEEEGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh------cceEEEEEeCCHHHHHHHHHhccCCCCCeeeec-CCCCeEEEEEEEcHHHHHHHHHHHH
Confidence 444444555555532 234567788888888888877765554 55555 3456999999999999999999997
Q ss_pred hhccceEE
Q psy11837 101 TLSSGRSH 108 (192)
Q Consensus 101 s~T~G~g~ 108 (192)
.. +.++.
T Consensus 288 ~~-GA~~I 294 (304)
T 1nh8_A 288 AI-GAKAI 294 (304)
T ss_dssp HT-TCEEE
T ss_pred Hc-CCCeE
Confidence 74 34444
No 37
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=24.57 E-value=1.3e+02 Score=18.66 Aligned_cols=57 Identities=5% Similarity=0.205 Sum_probs=36.9
Q ss_pred EEEEEEecC--CchhhHHHHHhhcCceeeeeeec--CC--eEEEEEeecc-hhhcchhhhhhhh
Q psy11837 46 MYLEIISDE--QYVHGILADLSRRRADIRSVEDR--GS--SKVIIAEAPL-SELLGYCQRVRTL 102 (192)
Q Consensus 46 ~~v~I~vp~--~~~g~V~~~l~~rrg~i~~~~~~--~~--~~~i~~~vP~-~~~~~~~~~L~s~ 102 (192)
+.+.|.+++ +.+..|.+.++..++.|.++... .+ .+.+.+.+|. ..+-.+...|+..
T Consensus 6 ~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~~~~~l~~l~~~L~~~ 69 (91)
T 1zpv_A 6 AIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDEKQDFTYLRNEFEAF 69 (91)
T ss_dssp EEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSCCCHHHHHHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeCCCCCHHHHHHHHHHH
Confidence 567788876 34566678888999999887653 34 3455555665 3444666666554
No 38
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=24.23 E-value=2.2e+02 Score=21.47 Aligned_cols=56 Identities=14% Similarity=0.162 Sum_probs=43.6
Q ss_pred eeeEEEEEEecCCchhhHHHHHhhcCceeeeeeecCCeEEEEEeecchhhcchhhhhhh
Q psy11837 43 EPYMYLEIISDEQYVHGILADLSRRRADIRSVEDRGSSKVIIAEAPLSELLGYCQRVRT 101 (192)
Q Consensus 43 EPv~~v~I~vp~~~~g~V~~~l~~rrg~i~~~~~~~~~~~i~~~vP~~~~~~~~~~L~s 101 (192)
--++-++|.++.. -..+.....-.||.+.++... .+.|+++-..+.+-.|...|+.
T Consensus 113 REl~LiKV~~~~~-r~ei~~i~~~fra~ivDv~~~--s~~iE~tG~~~ki~a~i~~l~~ 168 (193)
T 2fgc_A 113 REMALIKVRFDED-KQEIFQLVEIFRGKIIDVSRE--GAIIEITGARSKVEAFINLLPQ 168 (193)
T ss_dssp EEEEEEEEECSSC-HHHHHHHHHHTTCEEEEECSS--EEEEEEEECHHHHHHHHHHSCG
T ss_pred eEEEEEEEeCCcC-HHHHHHHHHHcCCEEEEEcCC--EEEEEEcCCHHHHHHHHHHhhh
Confidence 3345577777766 677777777889999887654 7899999999999888888855
Done!