RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11837
         (192 letters)



>d2bv3a5 d.58.11.1 (A:600-688) Elongation factor G (EF-G) {Thermus
           thermophilus [TaxId: 274]}
          Length = 89

 Score = 83.3 bits (206), Expect = 5e-22
 Identities = 30/89 (33%), Positives = 55/89 (61%), Gaps = 1/89 (1%)

Query: 40  ILLEPYMYLEIISDEQYVHGILADLSRRRADIRSVEDRGSSKVIIAEAPLSELLGYCQRV 99
           ++LEP M +E+ + E+Y+  ++ DL+ RR  I  +E RG+++VI A  PL+E+ GY   +
Sbjct: 1   VILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAFVPLAEMFGYATDL 60

Query: 100 RTLSSGRSHFSMEFLCFKQVSSQNEAQAV 128
           R+ + GR  F M F  +++V  +   + +
Sbjct: 61  RSKTQGRGSFVMFFDHYQEV-PKQVQEKL 88



 Score = 45.2 bits (107), Expect = 2e-07
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 134 FDPVIIAEAPLSELLGYCQRVRTLSSGRSHFSMEFLCFKQVSSQNEAQAV 183
              VI A  PL+E+ GY   +R+ + GR  F M F  +++V  +   + +
Sbjct: 40  NAQVIRAFVPLAEMFGYATDLRSKTQGRGSFVMFFDHYQEV-PKQVQEKL 88


>d2dy1a5 d.58.11.1 (A:570-665) Elongation factor G (EF-G) {Thermus
           thermophilus, EF-G-2 [TaxId: 274]}
          Length = 96

 Score = 76.5 bits (188), Expect = 2e-19
 Identities = 28/89 (31%), Positives = 51/89 (57%)

Query: 40  ILLEPYMYLEIISDEQYVHGILADLSRRRADIRSVEDRGSSKVIIAEAPLSELLGYCQRV 99
           +LLEP   L++++ ++ V  +L+DL  RR  I  +E  G+  V+ AE PL+E+L Y + +
Sbjct: 1   VLLEPIYRLKVLAPQERVGDVLSDLQARRGRILGMEQEGALSVVHAEVPLAEVLEYYKAL 60

Query: 100 RTLSSGRSHFSMEFLCFKQVSSQNEAQAV 128
             L+ G   +++EF  + +V      + V
Sbjct: 61  PGLTGGAGAYTLEFSHYAEVPPHLAQRIV 89



 Score = 40.3 bits (94), Expect = 1e-05
 Identities = 14/47 (29%), Positives = 26/47 (55%)

Query: 137 VIIAEAPLSELLGYCQRVRTLSSGRSHFSMEFLCFKQVSSQNEAQAV 183
           V+ AE PL+E+L Y + +  L+ G   +++EF  + +V      + V
Sbjct: 43  VVHAEVPLAEVLEYYKALPGLTGGAGAYTLEFSHYAEVPPHLAQRIV 89


>d1n0ua5 d.58.11.1 (A:726-842) Elongation factor 2 (eEF-2) {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 117

 Score = 63.5 bits (154), Expect = 4e-14
 Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 2/79 (2%)

Query: 43  EPYMYLEIISDEQYVHGILADLSRRRADIRSVEDRGSSK--VIIAEAPLSELLGYCQRVR 100
           EP   +EI   EQ V GI + L+++R  + S E R  +    + A  P++E  G+   +R
Sbjct: 1   EPVFLVEIQCPEQAVGGIYSVLNKKRGQVVSEEQRPGTPLFTVKAYLPVNESFGFTGELR 60

Query: 101 TLSSGRSHFSMEFLCFKQV 119
             + G++   M F  +  +
Sbjct: 61  QATGGQAFPQMVFDHWSTL 79


>d1vkda_ b.67.2.4 (A:) Hypothetical protein TM1225 {Thermotoga
           maritima [TaxId: 2336]}
          Length = 327

 Score = 26.5 bits (58), Expect = 2.2
 Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 7/62 (11%)

Query: 41  LLEPYMYLEIISDEQYV---HGILADLSRRRADI-RSVEDRGSSKVIIAEAPLSELLGYC 96
           LL P    E +     V      L D    R  I     D   + V +A   + E++ + 
Sbjct: 266 LLTPEEEYETVGFVPNVVFPCAALCDADTGRVAIYYGAAD---THVALAFGYIDEIVDFV 322

Query: 97  QR 98
           +R
Sbjct: 323 KR 324


>d1dmga_ c.22.1.1 (A:) Ribosomal protein L4 {Thermotoga maritima
           [TaxId: 2336]}
          Length = 225

 Score = 25.1 bits (54), Expect = 6.0
 Identities = 9/64 (14%), Positives = 21/64 (32%)

Query: 95  YCQRVRTLSSGRSHFSMEFLCFKQVSSQNEAQAVRNITGFDPVIIAEAPLSELLGYCQRV 154
             + +          ++  L +K+    N   + RN+     +I      S+      R+
Sbjct: 137 SLKEILQNLQLSDKKTLIVLPWKEEGYMNVKLSGRNLPDVKVIIADNPNNSKNGEKAVRI 196

Query: 155 RTLS 158
             L+
Sbjct: 197 DGLN 200


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.135    0.392 

Gapped
Lambda     K      H
   0.267   0.0587    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 686,978
Number of extensions: 28893
Number of successful extensions: 68
Number of sequences better than 10.0: 1
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 9
Length of query: 192
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 112
Effective length of database: 1,309,196
Effective search space: 146629952
Effective search space used: 146629952
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.3 bits)