BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11838
(78 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G H573a
pdb|1PN6|A Chain A, Domain-Wise Fitting Of The Crystal Structure Of
T.Thermophilus Ef-G Into The Low Resolution Map Of The
Release Complex.Puromycin.Efg.Gdpnp Of E.Coli 70s
Ribosome
Length = 691
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 30/37 (81%)
Query: 5 MGELHLEIIRDRILTEYKIEADLGPLQIAYKETVLSP 41
MGELHLEII DR+ E+K++A++G Q+AY+ET+ P
Sbjct: 454 MGELHLEIIVDRLKREFKVDANVGKPQVAYRETITKP 490
>pdb|1EFG|A Chain A, The Crystal Structure Of Elongation Factor G Complexed
With Gdp, At 2.7 Angstroms Resolution
pdb|2EFG|A Chain A, Translational Elongation Factor G Complexed With Gdp
pdb|1JQM|B Chain B, Fitting Of L11 Protein And Elongation Factor G (Ef-G) In
The Cryo-Em Map Of E. Coli 70s Ribosome Bound With Ef-G,
Gdp And Fusidic Acid
Length = 691
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 30/37 (81%)
Query: 5 MGELHLEIIRDRILTEYKIEADLGPLQIAYKETVLSP 41
MGELHLEII DR+ E+K++A++G Q+AY+ET+ P
Sbjct: 454 MGELHLEIIVDRLKREFKVDANVGKPQVAYRETITKP 490
>pdb|2BM1|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant G16v
Length = 691
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 30/37 (81%)
Query: 5 MGELHLEIIRDRILTEYKIEADLGPLQIAYKETVLSP 41
MGELHLEII DR+ E+K++A++G Q+AY+ET+ P
Sbjct: 454 MGELHLEIIVDRLKREFKVDANVGKPQVAYRETITKP 490
>pdb|3IZP|E Chain E, Conformation Of Ef-G During Translocation
Length = 688
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 30/37 (81%)
Query: 5 MGELHLEIIRDRILTEYKIEADLGPLQIAYKETVLSP 41
MGELHLEII DR+ E+K++A++G Q+AY+ET+ P
Sbjct: 454 MGELHLEIIVDRLKREFKVDANVGKPQVAYRETITKP 490
>pdb|2BM0|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant T84a
Length = 691
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 30/37 (81%)
Query: 5 MGELHLEIIRDRILTEYKIEADLGPLQIAYKETVLSP 41
MGELHLEII DR+ E+K++A++G Q+AY+ET+ P
Sbjct: 454 MGELHLEIIVDRLKREFKVDANVGKPQVAYRETITKP 490
>pdb|1KTV|A Chain A, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1KTV|B Chain B, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1DAR|A Chain A, Elongation Factor G In Complex With Gdp
pdb|1ELO|A Chain A, Elongation Factor G Without Nucleotide
pdb|2OM7|L Chain L, Structural Basis For Interaction Of The Ribosome With The
Switch Regions Of Gtp-Bound Elongation Factors
pdb|2WRI|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 1 Of 4).
pdb|2WRK|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 3 Of 4).
pdb|2XSY|Y Chain Y, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUY|Y Chain Y, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|3J18|Y Chain Y, Structure Of The Bacterial Ribosome Complexed By
Tmrna-Smpb And Ef-G During Translocation And Mld-Loading
(30s Subunit)
Length = 691
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 30/37 (81%)
Query: 5 MGELHLEIIRDRILTEYKIEADLGPLQIAYKETVLSP 41
MGELHLEII DR+ E+K++A++G Q+AY+ET+ P
Sbjct: 454 MGELHLEIIVDRLKREFKVDANVGKPQVAYRETITKP 490
>pdb|2J7K|A Chain A, Crystal Structure Of The T84a Mutant Ef-G:gdpcp Complex
Length = 691
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 30/37 (81%)
Query: 5 MGELHLEIIRDRILTEYKIEADLGPLQIAYKETVLSP 41
MGELHLEII DR+ E+K++A++G Q+AY+ET+ P
Sbjct: 454 MGELHLEIIVDRLKREFKVDANVGKPQVAYRETITKP 490
>pdb|1ZN0|B Chain B, Coordinates Of Rrf And Ef-G Fitted Into Cryo-Em Map Of The
50s Subunit Bound With Both Ef-G (Gdpnp) And Rrf
Length = 655
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 30/37 (81%)
Query: 5 MGELHLEIIRDRILTEYKIEADLGPLQIAYKETVLSP 41
MGELHLEII DR+ E+K++A++G Q+AY+ET+ P
Sbjct: 421 MGELHLEIIVDRLKREFKVDANVGKPQVAYRETITKP 457
>pdb|2BV3|A Chain A, Crystal Structure Of A Mutant Elongation Factor G Trapped
With A Gtp Analogue
Length = 691
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 29/37 (78%)
Query: 5 MGELHLEIIRDRILTEYKIEADLGPLQIAYKETVLSP 41
MGEL LEII DR+ E+K++A++G Q+AY+ET+ P
Sbjct: 454 MGELSLEIIVDRLKREFKVDANVGKPQVAYRETITKP 490
>pdb|3J0E|H Chain H, Models For The T. Thermophilus Ribosome Recycling Factor
And The E. Coli Elongation Factor G Bound To The E. Coli
Post-Termination Complex
Length = 702
Score = 45.8 bits (107), Expect = 6e-06, Method: Composition-based stats.
Identities = 19/34 (55%), Positives = 28/34 (82%)
Query: 5 MGELHLEIIRDRILTEYKIEADLGPLQIAYKETV 38
MGELHL+II DR+ E+ +EA++G Q+AY+ET+
Sbjct: 460 MGELHLDIIVDRMKREFNVEANVGKPQVAYRETI 493
>pdb|2RDO|7 Chain 7, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound
Length = 704
Score = 45.8 bits (107), Expect = 6e-06, Method: Composition-based stats.
Identities = 19/34 (55%), Positives = 28/34 (82%)
Query: 5 MGELHLEIIRDRILTEYKIEADLGPLQIAYKETV 38
MGELHL+II DR+ E+ +EA++G Q+AY+ET+
Sbjct: 461 MGELHLDIIVDRMKREFNVEANVGKPQVAYRETI 494
>pdb|4FN5|A Chain A, Elongation Factor G 1 (Pseudomonas Aeruginosa) In Complex
With Argyrin B
Length = 709
Score = 45.4 bits (106), Expect = 7e-06, Method: Composition-based stats.
Identities = 19/34 (55%), Positives = 28/34 (82%)
Query: 5 MGELHLEIIRDRILTEYKIEADLGPLQIAYKETV 38
MGELHL+II DR+ E+ +EA++G Q+AY+ET+
Sbjct: 464 MGELHLDIIVDRMKREFGVEANIGKPQVAYRETI 497
>pdb|2XEX|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
pdb|2XEX|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
Length = 693
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 27/38 (71%)
Query: 5 MGELHLEIIRDRILTEYKIEADLGPLQIAYKETVLSPA 42
MGELHL+I+ DR+ E+ +E ++G ++Y+ET S A
Sbjct: 453 MGELHLDILVDRMKKEFNVECNVGAPMVSYRETFKSSA 490
>pdb|3ZZ0|A Chain A, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
pdb|3ZZ0|B Chain B, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
Length = 693
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 27/38 (71%)
Query: 5 MGELHLEIIRDRILTEYKIEADLGPLQIAYKETVLSPA 42
MGELHL+I+ DR+ E+ +E ++G ++Y+ET S A
Sbjct: 453 MGELHLDILVDRMKKEFNVECNVGAPMVSYRETFKSSA 490
>pdb|3ZZT|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
pdb|3ZZT|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
Length = 693
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 27/38 (71%)
Query: 5 MGELHLEIIRDRILTEYKIEADLGPLQIAYKETVLSPA 42
MGELHL+I+ DR+ E+ +E ++G ++Y+ET S A
Sbjct: 453 MGELHLDILVDRMKKEFNVECNVGAPMVSYRETFKSSA 490
>pdb|3ZZU|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
pdb|3ZZU|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
Length = 693
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 27/38 (71%)
Query: 5 MGELHLEIIRDRILTEYKIEADLGPLQIAYKETVLSPA 42
MGELHL+I+ DR+ E+ +E ++G ++Y+ET S A
Sbjct: 453 MGELHLDILVDRMKKEFNVECNVGAPMVSYRETFKSSA 490
>pdb|1J9W|A Chain A, Solution Structure Of The Cai Michigan 1 Variant
pdb|1J9W|B Chain B, Solution Structure Of The Cai Michigan 1 Variant
pdb|1JV0|A Chain A, The Crystal Structure Of The Zinc(Ii) Adduct Of The Cai
Michigan 1 Variant
pdb|1JV0|B Chain B, The Crystal Structure Of The Zinc(Ii) Adduct Of The Cai
Michigan 1 Variant
Length = 260
Score = 28.5 bits (62), Expect = 0.94, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 7/50 (14%)
Query: 19 TEYKIEADLGPLQIAYKETVLSPAMASHEHKIKIGKSFRLRFRDDKTLAV 68
+E K + L P+ ++Y +PA A + I +G SFR+ F D+ +V
Sbjct: 36 SETKHDTSLKPISVSY-----NPATA--KEIINVGHSFRVNFEDNDNRSV 78
>pdb|2KXR|A Chain A, Zo1 Zu5 Domain McAA MUTATION
Length = 118
Score = 28.5 bits (62), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 10/61 (16%)
Query: 7 ELHLEIIRDRILTEYKIEADLGPLQIAYKETVLSPAMASHEHKIKIGKSFRLRFR--DDK 64
E++ ++ RD + L PL ET+LSP +A+ H +K K LR D K
Sbjct: 40 EIYFKVCRDNSI--------LPPLDKEKGETLLSPLVAAGPHGLKFLKPVELRLPHCDPK 91
Query: 65 T 65
T
Sbjct: 92 T 92
>pdb|2V7Y|A Chain A, Crystal Structure Of The Molecular Chaperone Dnak From
Geobacillus Kaustophilus Hta426 In Post-Atp Hydrolysis
State
pdb|4ANI|C Chain C, Structural Basis For The Intermolecular Communication
Between Dnak And Grpe In The Dnak Chaperone System From
Geobacillus Kaustophilus Hta426
pdb|4ANI|D Chain D, Structural Basis For The Intermolecular Communication
Between Dnak And Grpe In The Dnak Chaperone System From
Geobacillus Kaustophilus Hta426
pdb|4ANI|G Chain G, Structural Basis For The Intermolecular Communication
Between Dnak And Grpe In The Dnak Chaperone System From
Geobacillus Kaustophilus Hta426
pdb|4ANI|H Chain H, Structural Basis For The Intermolecular Communication
Between Dnak And Grpe In The Dnak Chaperone System From
Geobacillus Kaustophilus Hta426
Length = 509
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 6 GELHLEIIRDRI----LTEYKIEADLGPLQIAYKETVLSPAMASHEHKIKIGKSFRL 58
G LHLE+ R L+ + +E +GP++ A ++ L+P A + I +G S R+
Sbjct: 261 GPLHLEMTLTRAKFEELSAHLVERTMGPVRQALQDAGLTP--ADIDKVILVGGSTRI 315
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,031,249
Number of Sequences: 62578
Number of extensions: 60793
Number of successful extensions: 152
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 135
Number of HSP's gapped (non-prelim): 19
length of query: 78
length of database: 14,973,337
effective HSP length: 47
effective length of query: 31
effective length of database: 12,032,171
effective search space: 372997301
effective search space used: 372997301
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)