Query psy11838
Match_columns 78
No_of_seqs 120 out of 1011
Neff 5.6
Searched_HMMs 46136
Date Fri Aug 16 20:14:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11838.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11838hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0465|consensus 99.8 1.9E-20 4.1E-25 150.0 4.1 65 1-65 478-547 (721)
2 COG0480 FusA Translation elong 99.7 2.8E-18 6.1E-23 138.7 7.7 65 1-65 448-517 (697)
3 PRK12739 elongation factor G; 99.7 8.2E-17 1.8E-21 128.8 7.3 65 1-65 447-516 (691)
4 PRK00007 elongation factor G; 99.7 6.5E-17 1.4E-21 129.5 6.7 65 1-65 450-519 (693)
5 TIGR00484 EF-G translation elo 99.7 8.2E-17 1.8E-21 128.7 6.7 65 1-65 448-517 (689)
6 PRK13351 elongation factor G; 99.7 1.7E-16 3.6E-21 126.5 7.4 64 1-64 446-514 (687)
7 PRK12740 elongation factor G; 99.6 3.2E-16 6.9E-21 124.3 7.2 64 1-64 429-497 (668)
8 PTZ00416 elongation factor 2; 99.6 1.4E-15 3.1E-20 124.2 8.0 64 1-64 523-588 (836)
9 PLN00116 translation elongatio 99.6 2.5E-15 5.3E-20 122.9 7.3 63 1-64 529-595 (843)
10 TIGR00490 aEF-2 translation el 99.6 7E-15 1.5E-19 118.4 6.8 62 1-65 432-496 (720)
11 PRK07560 elongation factor EF- 99.5 1.5E-13 3.3E-18 110.8 7.1 60 1-64 432-495 (731)
12 PRK05433 GTP-binding protein L 99.1 4.1E-11 8.9E-16 95.5 4.9 37 5-41 346-382 (600)
13 TIGR01393 lepA GTP-binding pro 99.1 6E-11 1.3E-15 94.5 5.7 65 3-69 340-408 (595)
14 TIGR01394 TypA_BipA GTP-bindin 99.1 1.6E-10 3.5E-15 92.2 5.2 37 1-39 353-389 (594)
15 PRK10218 GTP-binding protein; 99.1 2E-10 4.3E-15 92.1 5.5 36 1-37 357-392 (607)
16 PF14492 EFG_II: Elongation Fa 99.0 5.8E-10 1.3E-14 67.7 3.3 29 1-29 47-75 (75)
17 KOG0469|consensus 98.9 9.2E-10 2E-14 88.6 3.6 65 1-65 529-595 (842)
18 KOG0464|consensus 98.8 4.5E-10 9.7E-15 89.1 -2.2 55 1-55 499-553 (753)
19 PRK00741 prfC peptide chain re 98.6 8E-08 1.7E-12 75.9 5.0 40 1-40 434-473 (526)
20 TIGR00503 prfC peptide chain r 98.5 9.7E-08 2.1E-12 75.4 3.9 39 1-39 435-473 (527)
21 KOG0462|consensus 98.3 3.1E-07 6.6E-12 74.1 3.0 37 2-38 395-431 (650)
22 PF03764 EFG_IV: Elongation fa 98.3 1.3E-06 2.8E-11 55.9 5.0 35 30-64 1-41 (120)
23 cd01693 mtEFG2_like_IV mtEF-G2 98.1 3.2E-06 7E-11 54.4 2.8 33 32-64 1-38 (120)
24 COG0481 LepA Membrane GTPase L 98.1 7.3E-06 1.6E-10 65.7 5.2 37 5-41 348-384 (603)
25 COG1217 TypA Predicted membran 98.0 5.4E-06 1.2E-10 66.4 2.8 34 2-36 358-391 (603)
26 KOG0467|consensus 97.6 6.2E-05 1.4E-09 62.8 3.3 41 2-43 513-554 (887)
27 cd01434 EFG_mtEFG1_IV EFG_mtEF 97.4 0.00014 3.1E-09 46.5 3.0 32 34-65 1-37 (116)
28 cd01680 EFG_like_IV Elongation 97.4 0.00015 3.2E-09 45.9 2.7 32 34-65 1-37 (116)
29 KOG0468|consensus 97.1 0.00072 1.6E-08 56.5 4.5 64 1-64 627-692 (971)
30 cd01684 Tet_like_IV EF-G_domai 97.1 0.0011 2.4E-08 42.7 4.2 32 32-64 1-36 (115)
31 cd01683 EF2_IV_snRNP EF-2_doma 94.8 0.039 8.4E-07 38.3 3.5 37 29-65 1-38 (178)
32 COG4108 PrfC Peptide chain rel 94.4 0.038 8.2E-07 44.4 3.0 39 1-39 436-474 (528)
33 cd01681 aeEF2_snRNP_like_IV Th 94.1 0.058 1.3E-06 36.8 3.0 36 29-65 1-38 (177)
34 PF09650 PHA_gran_rgn: Putativ 69.2 22 0.00047 22.0 5.2 40 10-64 18-57 (87)
35 PF04509 CheC: CheC-like famil 45.2 39 0.00084 17.8 2.9 22 13-34 17-38 (38)
36 PF04456 DUF503: Protein of un 44.4 23 0.00051 22.0 2.3 21 10-30 24-44 (90)
37 COG1550 Uncharacterized protei 37.5 31 0.00068 22.2 2.1 22 10-31 25-46 (95)
38 TIGR02610 PHA_gran_rgn putativ 36.4 1.1E+02 0.0023 19.1 5.2 39 10-63 21-59 (91)
39 COG0626 MetC Cystathionine bet 35.8 59 0.0013 25.5 3.8 30 13-42 118-162 (396)
40 PF11784 DUF3320: Protein of u 35.6 25 0.00053 19.7 1.3 22 4-25 23-44 (52)
41 PF08497 Radical_SAM_N: Radica 30.3 43 0.00093 25.7 2.2 35 1-35 164-198 (302)
42 PF07162 B9-C2: Ciliary basal 29.3 60 0.0013 21.9 2.6 44 14-73 123-167 (168)
43 PF13690 CheX: Chemotaxis phos 28.3 1.3E+02 0.0027 18.1 3.7 32 5-37 46-77 (94)
44 PRK00447 hypothetical protein; 25.9 48 0.001 22.4 1.6 32 42-73 81-118 (144)
45 PF08821 CGGC: CGGC domain; I 25.2 65 0.0014 20.7 2.0 20 9-28 86-105 (107)
46 TIGR01571 A_thal_Cys_rich unch 23.2 64 0.0014 20.2 1.7 20 5-24 58-77 (104)
47 PF10431 ClpB_D2-small: C-term 21.2 1.2E+02 0.0025 17.6 2.5 25 7-32 11-35 (81)
48 PRK05883 acyl carrier protein; 20.4 76 0.0017 19.4 1.6 17 9-26 51-67 (91)
No 1
>KOG0465|consensus
Probab=99.80 E-value=1.9e-20 Score=150.00 Aligned_cols=65 Identities=38% Similarity=0.571 Sum_probs=60.0
Q ss_pred CeeeecHHHHHHHHHHHHhhcCceEEEecceeEEEEEecCcceeeEEEEeeeCCceEE-----EEEECCC
Q psy11838 1 MKKRMGELHLEIIRDRILTEYKIEADLGPLQIAYKETVLSPAMASHEHKIKIGKSFRL-----RFRDDKT 65 (78)
Q Consensus 1 ~l~gmGelHLEii~~rL~~e~~v~v~~g~p~V~YrEti~~~~~~~~~~~kq~gg~g~~-----~v~P~~~ 65 (78)
+|+|||||||||+.+||+++|++++.+|+|+|+|||||++++++.+.|+||+||.||. .++|+..
T Consensus 478 vIsGMGELHLEIy~eRl~rEy~~~~~~Gkp~VayRETi~~~~~f~~~hKkqSgG~gqy~kv~g~~epl~~ 547 (721)
T KOG0465|consen 478 VISGMGELHLEIYVERLVREYKVDAELGKPQVAYRETITSPVEFDYTHKKQSGGAGQYGKVEGVIEPLPP 547 (721)
T ss_pred hhhccchhhHHHHHHHHHHHhCCccccCCceeeehhhcCCcccceeeeccccCCCccccceeeEEeecCC
Confidence 5899999999999999999999999999999999999999999999999999999853 5666643
No 2
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.75 E-value=2.8e-18 Score=138.67 Aligned_cols=65 Identities=34% Similarity=0.520 Sum_probs=61.5
Q ss_pred CeeeecHHHHHHHHHHHHhhcCceEEEecceeEEEEEecCcceeeEEEEeeeCCce-----EEEEEECCC
Q psy11838 1 MKKRMGELHLEIIRDRILTEYKIEADLGPLQIAYKETVLSPAMASHEHKIKIGKSF-----RLRFRDDKT 65 (78)
Q Consensus 1 ~l~gmGelHLEii~~rL~~e~~v~v~~g~p~V~YrEti~~~~~~~~~~~kq~gg~g-----~~~v~P~~~ 65 (78)
+|+|||||||||+++||+++||+++.+++|+|+||||+++++...++|+||+||+| .+++||...
T Consensus 448 iIsGmGELHLei~~drl~~~~~Vev~~~~PqV~YrETi~~~~~~~~~~~kqsgg~~q~~~v~i~~EP~~~ 517 (697)
T COG0480 448 IISGMGELHLEIIVDRLKREFGVEVEVGKPQVAYRETIRKKSEVEGKHKKQSGGPGQYGHVYIEIEPLED 517 (697)
T ss_pred EEEecchhhHHHHHHHHHhhcCceEEecCCeeEEEEeecccccceeeeeeccCCCCcccEEEEEEEeCCC
Confidence 58999999999999999999999999999999999999999889999999999987 589999985
No 3
>PRK12739 elongation factor G; Reviewed
Probab=99.68 E-value=8.2e-17 Score=128.81 Aligned_cols=65 Identities=37% Similarity=0.584 Sum_probs=60.2
Q ss_pred CeeeecHHHHHHHHHHHHhhcCceEEEecceeEEEEEecCcceeeEEEEeeeCCce-----EEEEEECCC
Q psy11838 1 MKKRMGELHLEIIRDRILTEYKIEADLGPLQIAYKETVLSPAMASHEHKIKIGKSF-----RLRFRDDKT 65 (78)
Q Consensus 1 ~l~gmGelHLEii~~rL~~e~~v~v~~g~p~V~YrEti~~~~~~~~~~~kq~gg~g-----~~~v~P~~~ 65 (78)
+|+||||||||++++||+++|++++.+++|.|+|||||+++++..++|+||+||++ .++++|+..
T Consensus 447 il~g~GelHLei~~~rL~~~f~vev~~s~p~V~yrEti~~~~~~~~~~~~~s~g~~~~~~v~l~~~P~~~ 516 (691)
T PRK12739 447 IISGMGELHLDIIVDRMKREFKVEANVGAPQVAYRETITKSVEAEGKYKKQSGGRGQYGDVWIEFEPNEE 516 (691)
T ss_pred EEEEecHHHHHHHHHHHHHHhCCeeEecCCEEEEeeccCCcccccceeccccCCCCceeEEEEEEEECCC
Confidence 47999999999999999999999999999999999999999888899999999876 488999854
No 4
>PRK00007 elongation factor G; Reviewed
Probab=99.68 E-value=6.5e-17 Score=129.52 Aligned_cols=65 Identities=34% Similarity=0.540 Sum_probs=60.5
Q ss_pred CeeeecHHHHHHHHHHHHhhcCceEEEecceeEEEEEecCcceeeEEEEeeeCCce-----EEEEEECCC
Q psy11838 1 MKKRMGELHLEIIRDRILTEYKIEADLGPLQIAYKETVLSPAMASHEHKIKIGKSF-----RLRFRDDKT 65 (78)
Q Consensus 1 ~l~gmGelHLEii~~rL~~e~~v~v~~g~p~V~YrEti~~~~~~~~~~~kq~gg~g-----~~~v~P~~~ 65 (78)
+|+||||||||++++||+++|++++.+++|+|+|||||++++...++|++|+||+| .++++|+..
T Consensus 450 ~l~g~GelHLei~~~rL~~~~~vev~~s~p~V~yrETi~~~~~~~~~~~~~~gg~~~~~~v~l~~eP~~~ 519 (693)
T PRK00007 450 IIAGMGELHLDIIVDRMKREFKVEANVGKPQVAYRETIRKKVEVEGKFVKQSGGRGQYGHVVIEFEPNEP 519 (693)
T ss_pred EEEEecHHhHHHHHHHHHHHhCCeeEecCCEEEEeecccCccccCcccccccCCCCceEEEEEEEEeCCC
Confidence 47999999999999999999999999999999999999999888899999999987 589999864
No 5
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.67 E-value=8.2e-17 Score=128.66 Aligned_cols=65 Identities=38% Similarity=0.608 Sum_probs=60.3
Q ss_pred CeeeecHHHHHHHHHHHHhhcCceEEEecceeEEEEEecCcceeeEEEEeeeCCce-----EEEEEECCC
Q psy11838 1 MKKRMGELHLEIIRDRILTEYKIEADLGPLQIAYKETVLSPAMASHEHKIKIGKSF-----RLRFRDDKT 65 (78)
Q Consensus 1 ~l~gmGelHLEii~~rL~~e~~v~v~~g~p~V~YrEti~~~~~~~~~~~kq~gg~g-----~~~v~P~~~ 65 (78)
+|+||||||||++++||+++||+++.+++|.|+|||||+++++..++|++|+|++| .++++|+..
T Consensus 448 il~g~GelHLei~~~~L~~~~~vev~~~~p~V~yrEti~~~~~~~~~~~~~~~~~~~~~~v~l~~eP~~~ 517 (689)
T TIGR00484 448 IIAGMGELHLDIIVDRMKREFKVEANVGAPQVAYRETIRSKVEVEGKHAKQSGGRGQYGHVKIRFEPLEP 517 (689)
T ss_pred EEEEeeHHHHHHHHHHHHHHhCCeeEecCCEEEEeecccCccccccccccccCCCCceEEEEEEEEECCC
Confidence 47999999999999999999999999999999999999999888899999999876 589999864
No 6
>PRK13351 elongation factor G; Reviewed
Probab=99.66 E-value=1.7e-16 Score=126.45 Aligned_cols=64 Identities=36% Similarity=0.523 Sum_probs=59.1
Q ss_pred CeeeecHHHHHHHHHHHHhhcCceEEEecceeEEEEEecCcceeeEEEEeeeCCce-----EEEEEECC
Q psy11838 1 MKKRMGELHLEIIRDRILTEYKIEADLGPLQIAYKETVLSPAMASHEHKIKIGKSF-----RLRFRDDK 64 (78)
Q Consensus 1 ~l~gmGelHLEii~~rL~~e~~v~v~~g~p~V~YrEti~~~~~~~~~~~kq~gg~g-----~~~v~P~~ 64 (78)
+++||||||||++++||+++|++++.+++|.|+|||||++++...++|++|+|++| .++++|+.
T Consensus 446 ii~g~GelHLei~~~rL~~~~~vev~~~~p~V~y~Eti~~~~~~~~~~~~~~~~~~~~~~v~~~~ep~~ 514 (687)
T PRK13351 446 ILSGMGELHLEVALERLRREFKLEVNTGKPQVAYRETIRKMAEGVYRHKKQFGGKGQFGEVHLRVEPLE 514 (687)
T ss_pred EEEEecHHHHHHHHHHHHHHhCCceEecCCeEEEEeeccccccccceeeeccCCCceEEEEEEEEEECC
Confidence 47999999999999999999999999999999999999999888889999999886 47889974
No 7
>PRK12740 elongation factor G; Reviewed
Probab=99.65 E-value=3.2e-16 Score=124.27 Aligned_cols=64 Identities=33% Similarity=0.505 Sum_probs=59.4
Q ss_pred CeeeecHHHHHHHHHHHHhhcCceEEEecceeEEEEEecCcceeeEEEEeeeCCce-----EEEEEECC
Q psy11838 1 MKKRMGELHLEIIRDRILTEYKIEADLGPLQIAYKETVLSPAMASHEHKIKIGKSF-----RLRFRDDK 64 (78)
Q Consensus 1 ~l~gmGelHLEii~~rL~~e~~v~v~~g~p~V~YrEti~~~~~~~~~~~kq~gg~g-----~~~v~P~~ 64 (78)
+++||||||||++++||+++|++++.+++|+|+||||+.++++..++|++++||++ .++++|+.
T Consensus 429 ~l~g~GelhLei~~~~L~~~~~~~v~~~~p~V~yrEti~~~~~~~~~~~~~~~~~~~~~~v~l~~ep~~ 497 (668)
T PRK12740 429 ILSGMGELHLDVALERLKREYGVEVETGPPQVPYRETIRKKAEGHGRHKKQSGGHGQFGDVWLEVEPLP 497 (668)
T ss_pred EEEEecHHHHHHHHHHHHHHhCceeEecCCeeEEeeccCCCccccceeccccCCCCceEEEEEEEEECC
Confidence 47999999999999999999999999999999999999999888899999999875 57889975
No 8
>PTZ00416 elongation factor 2; Provisional
Probab=99.61 E-value=1.4e-15 Score=124.24 Aligned_cols=64 Identities=20% Similarity=0.278 Sum_probs=59.5
Q ss_pred CeeeecHHHHHHHHHHHHhhc-CceEEEecceeEEEEEecCcceeeEEEEeeeCCc-eEEEEEECC
Q psy11838 1 MKKRMGELHLEIIRDRILTEY-KIEADLGPLQIAYKETVLSPAMASHEHKIKIGKS-FRLRFRDDK 64 (78)
Q Consensus 1 ~l~gmGelHLEii~~rL~~e~-~v~v~~g~p~V~YrEti~~~~~~~~~~~kq~gg~-g~~~v~P~~ 64 (78)
+|+||||+|||++++||+++| ++++.+++|+|+|||||+++++..+++++|+|+. ..++++|+.
T Consensus 523 il~g~GElHLei~l~~L~~~f~~vev~~s~P~V~yrETI~~~s~~~~~~~~~~~~~~v~~~~ePl~ 588 (836)
T PTZ00416 523 IVAGCGELHVEICLKDLEDDYANIDIIVSDPVVSYRETVTEESSQTCLSKSPNKHNRLYMKAEPLT 588 (836)
T ss_pred EEEeCcHhHHHHHHHHHHHHhcCcceEecCCEEEEEEEecccccceEEEECCCCCeeEEEEEEECC
Confidence 589999999999999999999 9999999999999999999998899999998865 588999985
No 9
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.59 E-value=2.5e-15 Score=122.92 Aligned_cols=63 Identities=22% Similarity=0.284 Sum_probs=55.8
Q ss_pred CeeeecHHHHHHHHHHHHhhc--CceEEEecceeEEEEEecCcceeeEEEEeeeCCce--EEEEEECC
Q psy11838 1 MKKRMGELHLEIIRDRILTEY--KIEADLGPLQIAYKETVLSPAMASHEHKIKIGKSF--RLRFRDDK 64 (78)
Q Consensus 1 ~l~gmGelHLEii~~rL~~e~--~v~v~~g~p~V~YrEti~~~~~~~~~~~kq~gg~g--~~~v~P~~ 64 (78)
+|+||||+|||++++||+++| ++++.+++|+|+|||||+++++..++ .+|.|.++ .++++|+.
T Consensus 529 il~g~GElHLEi~~~rL~~~f~~~vev~~s~p~V~yrETI~~~~~~~~~-~~~~~~~~~v~l~iePl~ 595 (843)
T PLN00116 529 IIAGAGELHLEICLKDLQDDFMGGAEIKVSDPVVSFRETVLEKSCRTVM-SKSPNKHNRLYMEARPLE 595 (843)
T ss_pred EEEEccHHHHHHHHHHHHHHhhCCCcEEEcCCeEEEEecccccccCcEE-EecCCceEEEEEEEEECC
Confidence 589999999999999999999 99999999999999999998876666 45777655 78999975
No 10
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.56 E-value=7e-15 Score=118.43 Aligned_cols=62 Identities=27% Similarity=0.430 Sum_probs=53.2
Q ss_pred CeeeecHHHHHHHHHHHHhhcCceEEEecceeEEEEEecCcce-eeEEEEeeeCCce--EEEEEECCC
Q psy11838 1 MKKRMGELHLEIIRDRILTEYKIEADLGPLQIAYKETVLSPAM-ASHEHKIKIGKSF--RLRFRDDKT 65 (78)
Q Consensus 1 ~l~gmGelHLEii~~rL~~e~~v~v~~g~p~V~YrEti~~~~~-~~~~~~kq~gg~g--~~~v~P~~~ 65 (78)
+|+||||+|||++++||+++||+++.+++|+|+|||||++.+. ..+++ .|+++ .++++|+..
T Consensus 432 il~g~GElHLei~~~rL~~~~~vev~~~~P~V~YrETi~~~~~~~~~~~---~~~~~~v~l~iePl~~ 496 (720)
T TIGR00490 432 LISGMGELHLEIIVEKIREDYGLDVETSPPIVVYRETVTGTSPVVEGKS---PNKHNRFYIVVEPLEE 496 (720)
T ss_pred EEEEccceeHHHHHHHHHHHhCCceeecCCEEEEEEeccccccceEEEc---CCCcEEEEEEEEECCc
Confidence 4799999999999999999999999999999999999999876 45555 34444 789999753
No 11
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.46 E-value=1.5e-13 Score=110.83 Aligned_cols=60 Identities=30% Similarity=0.412 Sum_probs=50.6
Q ss_pred CeeeecHHHHHHHHHHHHhhcCceEEEecceeEEEEEecCcce-eeEEEEeeeCC---ceEEEEEECC
Q psy11838 1 MKKRMGELHLEIIRDRILTEYKIEADLGPLQIAYKETVLSPAM-ASHEHKIKIGK---SFRLRFRDDK 64 (78)
Q Consensus 1 ~l~gmGelHLEii~~rL~~e~~v~v~~g~p~V~YrEti~~~~~-~~~~~~kq~gg---~g~~~v~P~~ 64 (78)
+++||||+|||++++||+++|++++.+++|+|+|||||.+++. ..+. +++ +..++++|+.
T Consensus 432 ~l~g~GElHLei~~~rL~~~~~vev~~~~p~V~yrETI~~~~~~~~~~----~~~~~~~v~l~iePl~ 495 (731)
T PRK07560 432 LLSGMGELHLEVITYRIKRDYGIEVVTSEPIVVYRETVRGKSQVVEGK----SPNKHNRFYISVEPLE 495 (731)
T ss_pred EEEcCCHHHHHHHHHHHHHHhCCceEecCCEEEEEEecccCccceEEE----CCCCceEEEEEEEECC
Confidence 5799999999999999999999999999999999999998874 3332 222 2589999975
No 12
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.15 E-value=4.1e-11 Score=95.51 Aligned_cols=37 Identities=27% Similarity=0.518 Sum_probs=36.0
Q ss_pred ecHHHHHHHHHHHHhhcCceEEEecceeEEEEEecCc
Q psy11838 5 MGELHLEIIRDRILTEYKIEADLGPLQIAYKETVLSP 41 (78)
Q Consensus 5 mGelHLEii~~rL~~e~~v~v~~g~p~V~YrEti~~~ 41 (78)
||+|||||+++||+++||+++.+++|+|+||||+++.
T Consensus 346 ~G~lHlev~~erL~~e~~~~v~~~~P~V~Yreti~~g 382 (600)
T PRK05433 346 LGLLHMEIIQERLEREFDLDLITTAPSVVYEVTLTDG 382 (600)
T ss_pred HHHHHHHHHHHHHHHhhCceEEEecCEEEEEEEEeCC
Confidence 9999999999999999999999999999999999874
No 13
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.15 E-value=6e-11 Score=94.52 Aligned_cols=65 Identities=15% Similarity=0.163 Sum_probs=47.3
Q ss_pred eeecHHHHHHHHHHHHhhcCceEEEecceeEEEEEecCcceeeEEEEeeeCCc----eEEEEEECCCccee
Q psy11838 3 KRMGELHLEIIRDRILTEYKIEADLGPLQIAYKETVLSPAMASHEHKIKIGKS----FRLRFRDDKTLAVK 69 (78)
Q Consensus 3 ~gmGelHLEii~~rL~~e~~v~v~~g~p~V~YrEti~~~~~~~~~~~kq~gg~----g~~~v~P~~~~~~~ 69 (78)
.|||+|||||+++||+++||+++.+++|+|+||||+++.. ...+....|.. .....||.-.++|-
T Consensus 340 g~lG~lHlei~~erL~re~~~~v~~~~P~V~Yreti~~g~--~~~~~~p~~~p~~~~~~~llEP~~~~~i~ 408 (595)
T TIGR01393 340 GFLGLLHMEIIQERLEREFNLDLITTAPSVIYRVYLTNGE--VIEVDNPSDLPDPGKIEHVEEPYVKATII 408 (595)
T ss_pred eeeeHHHHHHHHHHHHHHhCCeeEEecCEEEEEEEecCCc--EEEEECcccCCCcccccceeCCeEEEEEE
Confidence 3699999999999999999999999999999999998743 22233333322 12356666555543
No 14
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.07 E-value=1.6e-10 Score=92.21 Aligned_cols=37 Identities=35% Similarity=0.504 Sum_probs=34.9
Q ss_pred CeeeecHHHHHHHHHHHHhhcCceEEEecceeEEEEEec
Q psy11838 1 MKKRMGELHLEIIRDRILTEYKIEADLGPLQIAYKETVL 39 (78)
Q Consensus 1 ~l~gmGelHLEii~~rL~~e~~v~v~~g~p~V~YrEti~ 39 (78)
+++|||||||+|++++|+++ |+++.+++|+|+||| +.
T Consensus 353 ~v~g~GelHL~il~e~lrre-g~e~~~~~P~V~yre-i~ 389 (594)
T TIGR01394 353 EVSGRGELHLSILIETMRRE-GFELQVGRPQVIYKE-ID 389 (594)
T ss_pred EEEEECHHHHHHHHHHHhcc-CceEEEeCCEEEEEe-CC
Confidence 47999999999999999999 999999999999999 54
No 15
>PRK10218 GTP-binding protein; Provisional
Probab=99.07 E-value=2e-10 Score=92.06 Aligned_cols=36 Identities=22% Similarity=0.410 Sum_probs=34.9
Q ss_pred CeeeecHHHHHHHHHHHHhhcCceEEEecceeEEEEE
Q psy11838 1 MKKRMGELHLEIIRDRILTEYKIEADLGPLQIAYKET 37 (78)
Q Consensus 1 ~l~gmGelHLEii~~rL~~e~~v~v~~g~p~V~YrEt 37 (78)
+++|||||||+|+++||+++ |+++.+++|+|+||||
T Consensus 357 ~v~g~GelHL~il~e~lrre-g~e~~~~~P~V~yret 392 (607)
T PRK10218 357 RVSGRGELHLSVLIENMRRE-GFELAVSRPKVIFREI 392 (607)
T ss_pred EEEEEcHHHHHHHHHHHHhC-CceEEEeCCEEEEEEE
Confidence 47999999999999999999 9999999999999998
No 16
>PF14492 EFG_II: Elongation Factor G, domain II; PDB: 1WDT_A 2DY1_A 2XEX_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y 2XUY_Y 3J0E_H ....
Probab=98.96 E-value=5.8e-10 Score=67.75 Aligned_cols=29 Identities=34% Similarity=0.748 Sum_probs=26.8
Q ss_pred CeeeecHHHHHHHHHHHHhhcCceEEEec
Q psy11838 1 MKKRMGELHLEIIRDRILTEYKIEADLGP 29 (78)
Q Consensus 1 ~l~gmGelHLEii~~rL~~e~~v~v~~g~ 29 (78)
+|+|||++||+|+++||+++||+++.+++
T Consensus 47 ~l~g~Gelhlev~~~~L~~~~~v~v~~~~ 75 (75)
T PF14492_consen 47 ILSGMGELHLEVLLERLKRRFGVEVEFGK 75 (75)
T ss_dssp EEEESSHHHHHHHHHHHHHTTCEBEEEE-
T ss_pred EEEECCHHHHHHHHHHHHHHHCCeeEecC
Confidence 48999999999999999999999999984
No 17
>KOG0469|consensus
Probab=98.91 E-value=9.2e-10 Score=88.63 Aligned_cols=65 Identities=20% Similarity=0.181 Sum_probs=52.1
Q ss_pred CeeeecHHHHHHHHHHHHhhc-CceEEEecceeEEEEEecCcceeeEEEE-eeeCCceEEEEEECCC
Q psy11838 1 MKKRMGELHLEIIRDRILTEY-KIEADLGPLQIAYKETVLSPAMASHEHK-IKIGKSFRLRFRDDKT 65 (78)
Q Consensus 1 ~l~gmGelHLEii~~rL~~e~-~v~v~~g~p~V~YrEti~~~~~~~~~~~-kq~gg~g~~~v~P~~~ 65 (78)
++.|.||||||||+..|+++| +++++.++|.|+||||++.++...-.-+ +...++..++.+|..+
T Consensus 529 iiAgaGeLHLEICLkDLeedhA~iPlk~sdPvVsYrEtvs~~ss~~~lsKSpNKHNRi~mtaeP~~~ 595 (842)
T KOG0469|consen 529 IIAGAGELHLEICLKDLEEDHACIPLKKSDPVVSYRETVSEESSQTCLSKSPNKHNRIYMTAEPMDD 595 (842)
T ss_pred EEeccchhhHHHHHhhHhhcccCCceecCCCeeeeecccccccchhhhccCCcccceeEEecccCCc
Confidence 478999999999999999999 9999999999999999988875433222 1123346889999765
No 18
>KOG0464|consensus
Probab=98.78 E-value=4.5e-10 Score=89.10 Aligned_cols=55 Identities=38% Similarity=0.611 Sum_probs=49.0
Q ss_pred CeeeecHHHHHHHHHHHHhhcCceEEEecceeEEEEEecCcceeeEEEEeeeCCc
Q psy11838 1 MKKRMGELHLEIIRDRILTEYKIEADLGPLQIAYKETVLSPAMASHEHKIKIGKS 55 (78)
Q Consensus 1 ~l~gmGelHLEii~~rL~~e~~v~v~~g~p~V~YrEti~~~~~~~~~~~kq~gg~ 55 (78)
++-||||||+|++.+|++++||++..+|+-+|+|||+|.+...++.+..+..|.+
T Consensus 499 il~~~gelhie~ihdrikrey~ldtfig~lqvayre~i~~~lr~t~~ld~~lgdk 553 (753)
T KOG0464|consen 499 ILCGMGELHIEAIHDRIKREYGLDTFIGKLQVAYREMILEELRATAKLDDGLGDK 553 (753)
T ss_pred EEeccchhhHHHHHHHHHhhcCchheehhHHHHHHHHHHHHhhhhhhhhcccccc
Confidence 4679999999999999999999999999999999999998877777777666655
No 19
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=98.58 E-value=8e-08 Score=75.90 Aligned_cols=40 Identities=28% Similarity=0.478 Sum_probs=37.5
Q ss_pred CeeeecHHHHHHHHHHHHhhcCceEEEecceeEEEEEecC
Q psy11838 1 MKKRMGELHLEIIRDRILTEYKIEADLGPLQIAYKETVLS 40 (78)
Q Consensus 1 ~l~gmGelHLEii~~rL~~e~~v~v~~g~p~V~YrEti~~ 40 (78)
+|+|||+|||||+++||+++||+++.+++|+|++-.-+..
T Consensus 434 il~g~G~lhleV~~~RL~~ey~v~v~~~~~~v~~~rw~~~ 473 (526)
T PRK00741 434 ILGAVGQLQFEVVAHRLKNEYNVEAIYEPVGVATARWVEC 473 (526)
T ss_pred EEEEEeHHHHHHHHHHHHHHhCCEEEEecCCccEEEEEeC
Confidence 4799999999999999999999999999999999988854
No 20
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.51 E-value=9.7e-08 Score=75.44 Aligned_cols=39 Identities=26% Similarity=0.454 Sum_probs=35.5
Q ss_pred CeeeecHHHHHHHHHHHHhhcCceEEEecceeEEEEEec
Q psy11838 1 MKKRMGELHLEIIRDRILTEYKIEADLGPLQIAYKETVL 39 (78)
Q Consensus 1 ~l~gmGelHLEii~~rL~~e~~v~v~~g~p~V~YrEti~ 39 (78)
+|+|||+|||||+++||+++||+++.+++|+|+.--=+.
T Consensus 435 il~g~GelhleV~~~RL~~ey~v~v~~~~~~v~~~rw~~ 473 (527)
T TIGR00503 435 IVGAVGVLQFDVVVYRLKEEYNVEARYEPVNVATARWVE 473 (527)
T ss_pred EEEEEeHHHHHHHHHHHHHHhCCeEEEeCCCceEEEEEc
Confidence 479999999999999999999999999999999765554
No 21
>KOG0462|consensus
Probab=98.34 E-value=3.1e-07 Score=74.14 Aligned_cols=37 Identities=27% Similarity=0.456 Sum_probs=33.9
Q ss_pred eeeecHHHHHHHHHHHHhhcCceEEEecceeEEEEEe
Q psy11838 2 KKRMGELHLEIIRDRILTEYKIEADLGPLQIAYKETV 38 (78)
Q Consensus 2 l~gmGelHLEii~~rL~~e~~v~v~~g~p~V~YrEti 38 (78)
+.++|.|||+|+.+||++|||.++.+++|.|+||--.
T Consensus 395 ~gflG~LHm~Vf~erle~Eyg~elivt~PtV~Yr~~~ 431 (650)
T KOG0462|consen 395 LGFLGLLHMEVFIERLEREYGAELIVTPPTVPYRVVY 431 (650)
T ss_pred eeccceeeHHHHHHHHHHhcCceeeecCCcceEEEEe
Confidence 4679999999999999999999999999999999443
No 22
>PF03764 EFG_IV: Elongation factor G, domain IV; InterPro: IPR005517 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF2 (EF-G) is a G-protein. It brings about the translocation of peptidyl-tRNA and mRNA through a ratchet-like mechanism: the binding of GTP-EF2 to the ribosome causes a counter-clockwise rotation in the small ribosomal subunit; the hydrolysis of GTP to GDP by EF2 and the subsequent release of EF2 causes a clockwise rotation of the small subunit back to the starting position [, ]. This twisting action destabilises tRNA-ribosome interactions, freeing the tRNA to translocate along the ribosome upon GTP-hydrolysis by EF2. EF2 binding also affects the entry and exit channel openings for the mRNA, widening it when bound to enable the mRNA to translocate along the ribosome. EF2 has five domains. This entry represents domain IV found in EF2 (or EF-G) of both prokaryotes and eukaryotes. The EF2-GTP-ribosome complex undergoes extensive structural rearrangement for tRNA-mRNA movement to occur. Domain IV, which extends from the 'body' of the EF2 molecule much like a lever arm, appears to be essential for the structural transition to take place. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3J0E_H 1FNM_A 3IZP_E 2OM7_L 1KTV_A 2J7K_A 2BM1_A 2BM0_A 2BV3_A 1ZM3_E ....
Probab=98.31 E-value=1.3e-06 Score=55.90 Aligned_cols=35 Identities=26% Similarity=0.285 Sum_probs=31.2
Q ss_pred ceeEEEEEecCcce-eeEEEEeeeCCce-----EEEEEECC
Q psy11838 30 LQIAYKETVLSPAM-ASHEHKIKIGKSF-----RLRFRDDK 64 (78)
Q Consensus 30 p~V~YrEti~~~~~-~~~~~~kq~gg~g-----~~~v~P~~ 64 (78)
|+|+|||||+.+.+ ....|+++.|+.+ .++|+|.+
T Consensus 1 pqV~yrEti~~~~~~~~~~~~~~~g~~~~~a~v~~~~~P~~ 41 (120)
T PF03764_consen 1 PQVAYRETITKEVEGVEETFKRQYGGKRQFAKVILRVEPLE 41 (120)
T ss_dssp EEEETEEEESS-EEHEEEEEEEECTSSEEEEEEEEEEEETS
T ss_pred CccccchhcCccHHHHHHHHHHHhCCCCceEEEEEEEeecc
Confidence 89999999999998 8899999999986 58999987
No 23
>cd01693 mtEFG2_like_IV mtEF-G2 domain IV. This subfamily is a part the of mitochondrial transcriptional elongation factor, mtEF-G2. Mitochondrial translation is crucial for maintaining mitochondrial function and mutations in this system lead to a breakdown in the respiratory chain-oxidative phosphorylation system and to impaired maintenance of mitochondrial DNA. In complex with GTP, EF-G promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome.
Probab=98.06 E-value=3.2e-06 Score=54.37 Aligned_cols=33 Identities=36% Similarity=0.576 Sum_probs=29.1
Q ss_pred eEEEEEecCcceeeEEEEeeeCCce-----EEEEEECC
Q psy11838 32 IAYKETVLSPAMASHEHKIKIGKSF-----RLRFRDDK 64 (78)
Q Consensus 32 V~YrEti~~~~~~~~~~~kq~gg~g-----~~~v~P~~ 64 (78)
|+|||||+++++..++|+||+||.+ .++++|+.
T Consensus 1 V~YREti~~~~~~~~~~~~~~gg~~~~a~v~l~veP~~ 38 (120)
T cd01693 1 IAYRETILEPARATDTLEKVIGDKKHSVTVTMEVRPNQ 38 (120)
T ss_pred CCcccccCCcccCceEEEEeeCCCCeEEEEEEEEEECC
Confidence 7899999999887789999999886 58999974
No 24
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=98.05 E-value=7.3e-06 Score=65.74 Aligned_cols=37 Identities=27% Similarity=0.513 Sum_probs=34.0
Q ss_pred ecHHHHHHHHHHHHhhcCceEEEecceeEEEEEecCc
Q psy11838 5 MGELHLEIIRDRILTEYKIEADLGPLQIAYKETVLSP 41 (78)
Q Consensus 5 mGelHLEii~~rL~~e~~v~v~~g~p~V~YrEti~~~ 41 (78)
+|-|||||+.+||.+||++++..+.|.|.|+-..++.
T Consensus 348 LGlLHmeiiqERLeREf~ldlI~TaPsV~Y~v~~~~g 384 (603)
T COG0481 348 LGLLHMEIIQERLEREFDLDLITTAPSVVYKVELTDG 384 (603)
T ss_pred hhHHHHHHHHHHHHHhhCcceEecCCceEEEEEEcCC
Confidence 7999999999999999999999999999999776553
No 25
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=97.95 E-value=5.4e-06 Score=66.38 Aligned_cols=34 Identities=29% Similarity=0.428 Sum_probs=33.0
Q ss_pred eeeecHHHHHHHHHHHHhhcCceEEEecceeEEEE
Q psy11838 2 KKRMGELHLEIIRDRILTEYKIEADLGPLQIAYKE 36 (78)
Q Consensus 2 l~gmGelHLEii~~rL~~e~~v~v~~g~p~V~YrE 36 (78)
+||.|||||.|+++.||++ |.++.+|+|+|.|||
T Consensus 358 VsGRGELhLsILiE~MRRE-GfEl~VsrP~Vi~ke 391 (603)
T COG1217 358 VSGRGELHLSILIENMRRE-GFELQVSRPEVIIKE 391 (603)
T ss_pred EeccceeehHHHHHHhhhc-ceEEEecCceEEEEe
Confidence 7999999999999999999 999999999999998
No 26
>KOG0467|consensus
Probab=97.56 E-value=6.2e-05 Score=62.78 Aligned_cols=41 Identities=24% Similarity=0.409 Sum_probs=36.3
Q ss_pred eeeecHHHHHHHHHHHHhhc-CceEEEecceeEEEEEecCcce
Q psy11838 2 KKRMGELHLEIIRDRILTEY-KIEADLGPLQIAYKETVLSPAM 43 (78)
Q Consensus 2 l~gmGelHLEii~~rL~~e~-~v~v~~g~p~V~YrEti~~~~~ 43 (78)
+...||+|||-++..|++ | ++++..++|.|+||||+...+.
T Consensus 513 l~~aGevhlerc~kDL~e-fa~i~i~vSeP~vpfrET~~e~s~ 554 (887)
T KOG0467|consen 513 LVTAGEVHLERCLKDLKE-FAKIEISVSEPLVPFRETIIEDSD 554 (887)
T ss_pred eeeccHHHHHHHHHHHhh-hhceEEEecCCccchhhhccccch
Confidence 456799999999999999 7 9999999999999999966543
No 27
>cd01434 EFG_mtEFG1_IV EFG_mtEFG1_IV: domains similar to domain IV of the bacterial translational elongation factor (EF) EF-G. Included in this group is a domain of mitochondrial Elongation factor G1 (mtEFG1) proteins homologous to domain IV of EF-G. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provi
Probab=97.42 E-value=0.00014 Score=46.49 Aligned_cols=32 Identities=28% Similarity=0.305 Sum_probs=28.1
Q ss_pred EEEEecCcceeeEEEEeeeCCce-----EEEEEECCC
Q psy11838 34 YKETVLSPAMASHEHKIKIGKSF-----RLRFRDDKT 65 (78)
Q Consensus 34 YrEti~~~~~~~~~~~kq~gg~g-----~~~v~P~~~ 65 (78)
|||||+++++..+.|++|+|+++ .++++|+..
T Consensus 1 YrEti~~~~~~~~~~~~~~gg~~~~a~v~l~v~P~~~ 37 (116)
T cd01434 1 YRETITKPAEFEYRHKKQSGGAGQYGHVVLEIEPLPR 37 (116)
T ss_pred CCcccCceeeEEEEEEEcCCCCCeEEEEEEEEEECCC
Confidence 89999999887799999999986 589999753
No 28
>cd01680 EFG_like_IV Elongation Factor G-like domain IV. This family includes the translational elongation factor termed EF-2 (for Archaea and Eukarya) and EF-G (for Bacteria), ribosomal protection proteins that mediate tetracycline resistance and, an evolutionarily conserved U5 snRNP-specific protein (U5-116kD). In complex with GTP, EF-G/EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome. It has been shown that EF-G/EF-2_IV domain mimics the shape of anticodon arm of the tRNA in the structurally homologous ternary complex of Petra, EF-Tu (another transcriptional elongation factor) and GTP analog. The tip portion of this domain is found in a position that overlaps the anticodon arm of the A-site tRNA, implying that EF-G/EF-2 displaces the A-site tRNA to the P-site by physical interaction with the anticodon arm.
Probab=97.38 E-value=0.00015 Score=45.90 Aligned_cols=32 Identities=25% Similarity=0.335 Sum_probs=27.8
Q ss_pred EEEEecCcceeeEEEEeeeCCce-----EEEEEECCC
Q psy11838 34 YKETVLSPAMASHEHKIKIGKSF-----RLRFRDDKT 65 (78)
Q Consensus 34 YrEti~~~~~~~~~~~kq~gg~g-----~~~v~P~~~ 65 (78)
|||||+++++..+.|++++||.+ .++++|+..
T Consensus 1 YREti~~~~~~~~~~~~~~gg~~~~a~v~l~veP~~~ 37 (116)
T cd01680 1 YRETIRKSVEATGEFERELGGKPQFGEVTLRVEPLER 37 (116)
T ss_pred CcCccCcceeeeEEEccccCCCCeEEEEEEEEEECCC
Confidence 99999999888899999999886 589999753
No 29
>KOG0468|consensus
Probab=97.10 E-value=0.00072 Score=56.49 Aligned_cols=64 Identities=14% Similarity=0.171 Sum_probs=48.2
Q ss_pred CeeeecHHHHHHHHHHHHhhc-CceEEEecceeEEEEEecCcceee-EEEEeeeCCceEEEEEECC
Q psy11838 1 MKKRMGELHLEIIRDRILTEY-KIEADLGPLQIAYKETVLSPAMAS-HEHKIKIGKSFRLRFRDDK 64 (78)
Q Consensus 1 ~l~gmGelHLEii~~rL~~e~-~v~v~~g~p~V~YrEti~~~~~~~-~~~~kq~gg~g~~~v~P~~ 64 (78)
+|.|-|||-|+.++..||+-| .|++++++|.|.|.||+.++++.. .--.+..+.+..|-.||+.
T Consensus 627 vilGtGElYmDcvlyDLR~~yseieikvaDPvv~F~Et~vetssikcfaetpnkknkItmiaEPle 692 (971)
T KOG0468|consen 627 VILGTGELYMDCVLYDLRKSYSEIEIKVADPVVRFCETVVETSSIKCFAETPNKKNKITMIAEPLE 692 (971)
T ss_pred EEecCchhhHHHHHHHHHHHHhhhceeecCceeEEEEeeecccchhhhccCCCccCceeeeechhh
Confidence 478999999999999999999 899999999999999987754321 1111222444567777764
No 30
>cd01684 Tet_like_IV EF-G_domain IV_RPP domain is a part of bacterial ribosomal protected proteins (RPP) family. RPPs such as tetracycline resistance proteins Tet(M) and Tet(O) mediate tetracycline resistance in both gram-positive and -negative species. Tetracyclines inhibit the accommodation of aminoacyl-tRNA into ribosomal A site and therefore prevent the addition of new amino acids to the growing polypeptide. RPPs Tet(M) confer tetracycline resistance by releasing tetracycline from the ribosome and thereby freeing the ribosome from inhibitory effects of the drug, such that aa-tRNA can bind to the A site and protein synthesis can continue.
Probab=97.05 E-value=0.0011 Score=42.70 Aligned_cols=32 Identities=25% Similarity=0.167 Sum_probs=23.0
Q ss_pred eEEEEEecCcceeeEEEEeeeCC--c--eEEEEEECC
Q psy11838 32 IAYKETVLSPAMASHEHKIKIGK--S--FRLRFRDDK 64 (78)
Q Consensus 32 V~YrEti~~~~~~~~~~~kq~gg--~--g~~~v~P~~ 64 (78)
|+|||||+++++. ..+++++|. . ..++++|+.
T Consensus 1 VaYRETI~~~~~~-~~~~~~~~~~~~a~v~l~veP~~ 36 (115)
T cd01684 1 VIYKERPLGTGEG-VEHIEVPPNPFWATVGLRVEPLP 36 (115)
T ss_pred CceEEEeCCcEEE-EEEEccCCCcEEEEEEEEEEECC
Confidence 7899999999773 555555543 2 268999964
No 31
>cd01683 EF2_IV_snRNP EF-2_domain IV_snRNP domain is a part of 116kD U5-specific protein of the U5 small nucleoprotein (snRNP) particle, essential component of the spliceosome. The protein is structurally closely related to the eukaryotic translational elongation factor EF2. This domain has been also identified in 114kD U5-specific protein of Saccharomyces cerevisiae and may play an important role either in splicing process itself or the recycling of spliceosomal snRNP.
Probab=94.82 E-value=0.039 Score=38.30 Aligned_cols=37 Identities=11% Similarity=0.017 Sum_probs=23.4
Q ss_pred cceeEEEEEecCcceeeEEEE-eeeCCceEEEEEECCC
Q psy11838 29 PLQIAYKETVLSPAMASHEHK-IKIGKSFRLRFRDDKT 65 (78)
Q Consensus 29 ~p~V~YrEti~~~~~~~~~~~-kq~gg~g~~~v~P~~~ 65 (78)
+|.|+|||||+..+.....-+ .....+..+..+|+.+
T Consensus 1 ~P~V~f~ETv~~~s~~~~~~ks~nk~n~i~~~aepL~~ 38 (178)
T cd01683 1 DPVVTFCETVVETSSAKCFAETPNKKNKITMIAEPLDK 38 (178)
T ss_pred CCcceEEeeccccCCCceeeECCCcccEEEEEEEeCCH
Confidence 599999999987764221111 1112346888889854
No 32
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=94.42 E-value=0.038 Score=44.42 Aligned_cols=39 Identities=23% Similarity=0.509 Sum_probs=32.2
Q ss_pred CeeeecHHHHHHHHHHHHhhcCceEEEecceeEEEEEec
Q psy11838 1 MKKRMGELHLEIIRDRILTEYKIEADLGPLQIAYKETVL 39 (78)
Q Consensus 1 ~l~gmGelHLEii~~rL~~e~~v~v~~g~p~V~YrEti~ 39 (78)
++...|.||.||+.+||++|||+++.+.+..++.--=|.
T Consensus 436 IlGAVG~LQFeV~~~RL~~EY~ve~~~e~~~~~~aRWi~ 474 (528)
T COG4108 436 ILGAVGQLQFEVVQARLKNEYNVEAVFEPVNFSTARWIE 474 (528)
T ss_pred eEEeeeeeehHHHHHHHHhhhCCeEEEeeccceEEEEec
Confidence 356789999999999999999999999987666554443
No 33
>cd01681 aeEF2_snRNP_like_IV This family represents domain IV of archaeal and eukaryotic elongation factor 2 (aeEF-2) and of an evolutionarily conserved U5 snRNP-specific protein. U5 snRNP is a GTP-binding factor closely related to the ribosomal translocase EF-2. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome. It has been shown that EF-2_IV domain mimics the shape of anticodon arm of the tRNA in the structurally homologous ternary complex of Phe-tRNA, EF-1 (another transcriptional elongation factor) and GTP analog. The tip portion of this domain is found in a position that overlaps the anticodon arm of the A-site tRNA, implying that EF-2 displaces the A-site tRNA to the P-site by physical interaction with the anticodon arm.
Probab=94.09 E-value=0.058 Score=36.84 Aligned_cols=36 Identities=14% Similarity=0.146 Sum_probs=22.8
Q ss_pred cceeEEEEEecCcceeeEEEEeeeCC--ceEEEEEECCC
Q psy11838 29 PLQIAYKETVLSPAMASHEHKIKIGK--SFRLRFRDDKT 65 (78)
Q Consensus 29 ~p~V~YrEti~~~~~~~~~~~kq~gg--~g~~~v~P~~~ 65 (78)
+|.|+||||+.+.+..... .+...+ +..++.+|+.+
T Consensus 1 ~PiV~frETi~~~~~~~~~-~~s~n~~~~i~~~a~PLp~ 38 (177)
T cd01681 1 DPVVSFRETVVETSSGTCL-AKSPNKHNRLYMRAEPLPE 38 (177)
T ss_pred CCCCCEeeecccCCCccEE-EEcCCcceEEEEEEecCCH
Confidence 5999999999887642211 122222 35788888743
No 34
>PF09650 PHA_gran_rgn: Putative polyhydroxyalkanoic acid system protein (PHA_gran_rgn); InterPro: IPR013433 Proteins in this entry are encoded by genes involved in either polyhydroxyalkanoic acid (PHA) biosynthesis or utilisation, including proteins at found at the surface of PHA granules. These proteins have so far been predominantly found in the Pseudomonadales, Xanthomonadales, and Vibrionales, all of which belong to the Gammaproteobacteria.
Probab=69.24 E-value=22 Score=21.98 Aligned_cols=40 Identities=20% Similarity=0.335 Sum_probs=27.6
Q ss_pred HHHHHHHHHhhcCceEEEecceeEEEEEecCcceeeEEEEeeeCCceEEEEEECC
Q psy11838 10 LEIIRDRILTEYKIEADLGPLQIAYKETVLSPAMASHEHKIKIGKSFRLRFRDDK 64 (78)
Q Consensus 10 LEii~~rL~~e~~v~v~~g~p~V~YrEti~~~~~~~~~~~kq~gg~g~~~v~P~~ 64 (78)
++-..++|+++|+++.....=.+.|+ -+|-.|.+.|.|..
T Consensus 18 ~~~~~~~l~~~~~~~~~W~gd~l~f~---------------~~gv~G~l~V~~d~ 57 (87)
T PF09650_consen 18 AEELAEKLAEEYGVECTWEGDRLSFS---------------GQGVDGTLDVADDH 57 (87)
T ss_pred HHHHHHHHHHHhCCEEEEEcCEEEEE---------------eCCceEEEEEcCCE
Confidence 45678899999998877775555443 23456788887763
No 35
>PF04509 CheC: CheC-like family; InterPro: IPR007597 The precise function of these proteins is unclear, but some of them are involved in flagella motor switch []. The region represented in this entry is found in the CheC, CheX, CheA and FliY proteins. In some cases, this region is repeated in multiple copies.; GO: 0016787 hydrolase activity; PDB: 3QTA_A 1XKO_B 1SQU_B 3HZH_B 2F9Z_B 1XKR_A.
Probab=45.17 E-value=39 Score=17.77 Aligned_cols=22 Identities=18% Similarity=0.317 Sum_probs=17.1
Q ss_pred HHHHHHhhcCceEEEecceeEE
Q psy11838 13 IRDRILTEYKIEADLGPLQIAY 34 (78)
Q Consensus 13 i~~rL~~e~~v~v~~g~p~V~Y 34 (78)
....|-+..|..+..+.|.+.|
T Consensus 17 ~~~als~~~~~~i~is~P~~~i 38 (38)
T PF04509_consen 17 AATALSEMLGLEIDISPPEVAI 38 (38)
T ss_dssp HHHHHHHHHTS-EEEEEEEEEE
T ss_pred HHHHHHHHhCCceEcCCCCccC
Confidence 4566777778999999999876
No 36
>PF04456 DUF503: Protein of unknown function (DUF503); InterPro: IPR007546 This is a family of conserved hypothetical bacterial proteins, including TT1725 from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579), which has a ferredoxin-like alpha+beta-sandwich fold [].; PDB: 1J27_A.
Probab=44.36 E-value=23 Score=22.02 Aligned_cols=21 Identities=5% Similarity=0.159 Sum_probs=14.6
Q ss_pred HHHHHHHHHhhcCceEEEecc
Q psy11838 10 LEIIRDRILTEYKIEADLGPL 30 (78)
Q Consensus 10 LEii~~rL~~e~~v~v~~g~p 30 (78)
+.-+++||+++|++.+.=..+
T Consensus 24 vksl~~klr~rfnvSvaEv~~ 44 (90)
T PF04456_consen 24 VKSLIDKLRNRFNVSVAEVGH 44 (90)
T ss_dssp HHHHHHHHHHHSS-EEEEEE-
T ss_pred HHHHHHHHHhhCCeEEEEecC
Confidence 567889999999998754333
No 37
>COG1550 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.49 E-value=31 Score=22.23 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=16.3
Q ss_pred HHHHHHHHHhhcCceEEEecce
Q psy11838 10 LEIIRDRILTEYKIEADLGPLQ 31 (78)
Q Consensus 10 LEii~~rL~~e~~v~v~~g~p~ 31 (78)
+.-++.||+++|++.+.-.+.+
T Consensus 25 lr~iv~rLk~KFnvSvaE~~~q 46 (95)
T COG1550 25 LRPIVTRLKNKFNVSVAETGYQ 46 (95)
T ss_pred HHHHHHHHHHhcceeeeecCch
Confidence 5667899999999887544443
No 38
>TIGR02610 PHA_gran_rgn putative polyhydroxyalkanoic acid system protein. All members of this family are encoded by genes polyhydroxyalkanoic acid (PHA) biosynthesis and utilization genes, including proteins at found at the surface of PHA granules. Examples so far are found in the Pseudomonales, Xanthomonadales, and Vibrionales, all of which belong to the Gammaproteobacteria.
Probab=36.42 E-value=1.1e+02 Score=19.11 Aligned_cols=39 Identities=8% Similarity=0.132 Sum_probs=25.9
Q ss_pred HHHHHHHHHhhcCceEEEecceeEEEEEecCcceeeEEEEeeeCCceEEEEEEC
Q psy11838 10 LEIIRDRILTEYKIEADLGPLQIAYKETVLSPAMASHEHKIKIGKSFRLRFRDD 63 (78)
Q Consensus 10 LEii~~rL~~e~~v~v~~g~p~V~YrEti~~~~~~~~~~~kq~gg~g~~~v~P~ 63 (78)
++-+.+.++++|+++.....=.+.|+-+ |-.|++.|.|.
T Consensus 21 ~e~~a~~l~~~~~~e~~W~GD~l~F~~~---------------gv~G~l~V~~d 59 (91)
T TIGR02610 21 AEDLARKLTDRYGLASHWEGDTLRIARS---------------GVDGAVHLGPQ 59 (91)
T ss_pred HHHHHHHHHHHhCCEeEEeCCEEEEEEe---------------eeeEEEEEcCC
Confidence 3446788999999877765555555422 45577777664
No 39
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=35.82 E-value=59 Score=25.50 Aligned_cols=30 Identities=20% Similarity=0.428 Sum_probs=22.5
Q ss_pred HHHHHHhhcCceEEEe---------------cceeEEEEEecCcc
Q psy11838 13 IRDRILTEYKIEADLG---------------PLQIAYKETVLSPA 42 (78)
Q Consensus 13 i~~rL~~e~~v~v~~g---------------~p~V~YrEti~~~~ 42 (78)
+.+++.++||+++.+- ++++.|-||+++|.
T Consensus 118 ~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~~~tk~v~lEtPsNP~ 162 (396)
T COG0626 118 LFEKILQKFGVEVTFVDPGDDEALEAAIKEPNTKLVFLETPSNPL 162 (396)
T ss_pred HHHHHHHhcCeEEEEECCCChHHHHHHhcccCceEEEEeCCCCcc
Confidence 4456666699988743 35889999999985
No 40
>PF11784 DUF3320: Protein of unknown function (DUF3320); InterPro: IPR021754 This family is conserved in Proteobacteria and Chlorobi families. Many members are annotated as being putative DNA helicase-related proteins.
Probab=35.60 E-value=25 Score=19.68 Aligned_cols=22 Identities=18% Similarity=0.345 Sum_probs=18.6
Q ss_pred eecHHHHHHHHHHHHhhcCceE
Q psy11838 4 RMGELHLEIIRDRILTEYKIEA 25 (78)
Q Consensus 4 gmGelHLEii~~rL~~e~~v~v 25 (78)
.=|-+|-+.+..|+.+-||+.-
T Consensus 23 ~EgPI~~~~L~~Ri~~a~G~~R 44 (52)
T PF11784_consen 23 VEGPIHEDELARRIARAWGLSR 44 (52)
T ss_pred HcCCccHHHHHHHHHHHcCccc
Confidence 3478899999999999998764
No 41
>PF08497 Radical_SAM_N: Radical SAM N-terminal; InterPro: IPR013704 This domain tends to occur to the N terminus of PF04055 from PFAM radical SAM domain in hypothetical bacterial proteins. Proteins in this entry are radical SAM proteins, they catalyse diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].
Probab=30.33 E-value=43 Score=25.65 Aligned_cols=35 Identities=23% Similarity=0.133 Sum_probs=22.8
Q ss_pred CeeeecHHHHHHHHHHHHhhcCceEEEecceeEEE
Q psy11838 1 MKKRMGELHLEIIRDRILTEYKIEADLGPLQIAYK 35 (78)
Q Consensus 1 ~l~gmGelHLEii~~rL~~e~~v~v~~g~p~V~Yr 35 (78)
++-||||..+-=+.++|++--.++-...-+-++|.
T Consensus 164 LvYGMGE~~i~eiA~~L~~G~~~~~i~~I~Gt~~~ 198 (302)
T PF08497_consen 164 LVYGMGEKPILEIARRLAAGEPIEDIRDIRGTCYI 198 (302)
T ss_pred EEecccHHHHHHHHHHHHcCCChhHcccCCceEEe
Confidence 46899999998899999875433322233444443
No 42
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=29.29 E-value=60 Score=21.90 Aligned_cols=44 Identities=16% Similarity=0.172 Sum_probs=24.6
Q ss_pred HHHHHhhc-CceEEEecceeEEEEEecCcceeeEEEEeeeCCceEEEEEECCCcceeeeee
Q psy11838 14 RDRILTEY-KIEADLGPLQIAYKETVLSPAMASHEHKIKIGKSFRLRFRDDKTLAVKTSVA 73 (78)
Q Consensus 14 ~~rL~~e~-~v~v~~g~p~V~YrEti~~~~~~~~~~~kq~gg~g~~~v~P~~~~~~~~~~~ 73 (78)
.++|++-| |-..++.+|..... .-++..++.++.+.+.|++.|.
T Consensus 123 ~~~l~~~f~G~~pel~d~~~~~~----------------~~~R~~l~t~s~G~V~v~l~vi 167 (168)
T PF07162_consen 123 RQELRSFFVGGRPELVDPDFIAS----------------GESRFGLRTESSGSVKVRLNVI 167 (168)
T ss_pred HHHhhhheecCCceEcCcchhcC----------------cccccCcEEEeeeEEEEEEEEe
Confidence 45555555 55555555544433 1223356777777777777663
No 43
>PF13690 CheX: Chemotaxis phosphatase CheX; PDB: 3HM4_B 3H4Y_A 3H2D_A 3IIC_B.
Probab=28.27 E-value=1.3e+02 Score=18.08 Aligned_cols=32 Identities=28% Similarity=0.364 Sum_probs=20.3
Q ss_pred ecHHHHHHHHHHHHhhcCceEEEecceeEEEEE
Q psy11838 5 MGELHLEIIRDRILTEYKIEADLGPLQIAYKET 37 (78)
Q Consensus 5 mGelHLEii~~rL~~e~~v~v~~g~p~V~YrEt 37 (78)
.||+ ..++.-..+++++.++.++.|.+..-.-
T Consensus 46 ~~El-~NiI~G~~~~~l~~~~~ls~P~v~~g~~ 77 (94)
T PF13690_consen 46 LGEL-ANIIAGNAKSELGEPIDLSPPSVIEGKG 77 (94)
T ss_dssp HHHH-HHHHHHHHHHHHT--EEE---EEEEEEE
T ss_pred HHHH-HHHHHHHHHHHcCCceeecCCEEEcCCC
Confidence 4555 3667777888889999999999988754
No 44
>PRK00447 hypothetical protein; Provisional
Probab=25.89 E-value=48 Score=22.43 Aligned_cols=32 Identities=6% Similarity=-0.071 Sum_probs=26.0
Q ss_pred ceeeEEEEeeeCCceEEEE------EECCCcceeeeee
Q psy11838 42 AMASHEHKIKIGKSFRLRF------RDDKTLAVKTSVA 73 (78)
Q Consensus 42 ~~~~~~~~kq~gg~g~~~v------~P~~~~~~~~~~~ 73 (78)
.....+++||-...|.++| +|++...|.+...
T Consensus 81 ~~~~frlnKQaAy~G~v~~~dgd~espLG~I~v~i~~~ 118 (144)
T PRK00447 81 NEITFMVHKQAAYVGVLSFVDSDEESPLGPITITIRYK 118 (144)
T ss_pred CEEEEEEEhHHHhCCCeEecCCCCCCCCCCEEEEEEcC
Confidence 3457899999999999998 6889988887654
No 45
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=25.15 E-value=65 Score=20.67 Aligned_cols=20 Identities=30% Similarity=0.476 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhhcCceEEEe
Q psy11838 9 HLEIIRDRILTEYKIEADLG 28 (78)
Q Consensus 9 HLEii~~rL~~e~~v~v~~g 28 (78)
|++-+.+.|++.||++|..|
T Consensus 86 ~~~~~~~~I~~~~gi~VV~G 105 (107)
T PF08821_consen 86 HIDEIKKIIEEKFGIEVVEG 105 (107)
T ss_pred CHHHHHHHHHHHhCCCEeee
Confidence 57888899999999888765
No 46
>TIGR01571 A_thal_Cys_rich uncharacterized Cys-rich domain. This model describes an uncharacterized domain of about 100 residues. It is common in plants but found also in Homo sapiens, Dictyostelium, and Leishmania; at least 12 distinct members are found in Arabidopsis. Most members of this family contain more than 10 per cent Cys, but no Cys residue is invariant across the family.
Probab=23.22 E-value=64 Score=20.22 Aligned_cols=20 Identities=20% Similarity=0.227 Sum_probs=15.5
Q ss_pred ecHHHHHHHHHHHHhhcCce
Q psy11838 5 MGELHLEIIRDRILTEYKIE 24 (78)
Q Consensus 5 mGelHLEii~~rL~~e~~v~ 24 (78)
++-++.-....++|++||++
T Consensus 58 ~~~~~~~~~R~~~R~ry~i~ 77 (104)
T TIGR01571 58 FCGCYTCFIRIKLREKYGIQ 77 (104)
T ss_pred HHHHHHHHHHHHHHHHhCCC
Confidence 44556667789999999986
No 47
>PF10431 ClpB_D2-small: C-terminal, D2-small domain, of ClpB protein ; InterPro: IPR019489 Most Clp ATPases form complexes with peptidase subunits and are involved in protein degradation, though some, such as ClpB, do not associate with peptidases and are involved in protein disaggregation []. This entry represents the C-terminal domain of Clp ATPases, often referred to as the D2-small domain, which forms a mixed alpha-beta structure. Compared with the adjacent AAA D1-small domain (IPR003959 from INTERPRO) it lacks the long coiled-coil insertion, and instead of helix C4 contains a beta-strand (e3) that is part of a three stranded beta-pleated sheet. In Thermophilus the whole protein forms a hexamer with the D1-small and D2-small domains located on the outside of the hexamer, with the long coiled-coil being exposed on the surface. The D2-small domain is essential for oligomerisation, forming a tight interface with the D2-large domain of a neighbouring subunit, thereby providing enough binding energy to stabilise the functional assembly [].; PDB: 3HWS_A 3HTE_F 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 3PXI_A 1R6B_X ....
Probab=21.23 E-value=1.2e+02 Score=17.59 Aligned_cols=25 Identities=20% Similarity=0.399 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHhhcCceEEEeccee
Q psy11838 7 ELHLEIIRDRILTEYKIEADLGPLQI 32 (78)
Q Consensus 7 elHLEii~~rL~~e~~v~v~~g~p~V 32 (78)
+++|+-+.++|.+ +|+++.+++-.+
T Consensus 11 ~~~l~~l~~~l~~-~~i~l~~~~~~~ 35 (81)
T PF10431_consen 11 DLQLKKLNERLKE-KGIELEFDDAVV 35 (81)
T ss_dssp HSHHHHHHHHHHH-TTEEEEE-HHHH
T ss_pred HHHHHHHHHHHHH-CCCeEEecHHHH
Confidence 3477788889988 799999886543
No 48
>PRK05883 acyl carrier protein; Validated
Probab=20.45 E-value=76 Score=19.45 Aligned_cols=17 Identities=6% Similarity=-0.095 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhhcCceEE
Q psy11838 9 HLEIIRDRILTEYKIEAD 26 (78)
Q Consensus 9 HLEii~~rL~~e~~v~v~ 26 (78)
|++++. .|.++||+++.
T Consensus 51 ~v~lv~-~lE~~fgI~i~ 67 (91)
T PRK05883 51 FAVGMV-AIEERLGVALS 67 (91)
T ss_pred HHHHHH-HHHHHHCCCcC
Confidence 477776 79999999874
Done!