Query psy11838
Match_columns 78
No_of_seqs 120 out of 1011
Neff 5.6
Searched_HMMs 29240
Date Fri Aug 16 20:14:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11838.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11838hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xex_A Elongation factor G; GT 99.8 2.1E-19 7.1E-24 142.2 8.2 64 1-64 449-517 (693)
2 2rdo_7 EF-G, elongation factor 99.8 9.7E-19 3.3E-23 138.7 7.8 63 1-63 457-525 (704)
3 2dy1_A Elongation factor G; tr 99.7 4.6E-18 1.6E-22 133.8 8.1 63 1-64 424-491 (665)
4 1dar_A EF-G, elongation factor 99.7 3E-19 1E-23 141.2 1.3 64 1-64 450-518 (691)
5 4fn5_A EF-G 1, elongation fact 99.6 1.5E-16 5E-21 125.7 6.0 64 1-64 460-529 (709)
6 3vqt_A RF-3, peptide chain rel 99.6 2.3E-17 7.8E-22 127.9 -2.2 63 1-63 455-525 (548)
7 3j25_A Tetracycline resistance 99.6 1.1E-16 3.9E-21 125.4 1.5 63 1-65 386-453 (638)
8 1n0u_A EF-2, elongation factor 99.6 1.7E-15 5.9E-20 122.0 4.2 63 1-64 529-594 (842)
9 2h5e_A Peptide chain release f 99.3 2.5E-12 8.6E-17 99.3 4.1 41 1-41 437-477 (529)
10 2ywe_A GTP-binding protein LEP 99.2 2.2E-11 7.5E-16 95.9 6.9 37 4-40 344-380 (600)
11 3cb4_D GTP-binding protein LEP 99.2 1.8E-11 6.2E-16 96.2 6.3 64 4-69 342-409 (599)
12 3e3x_A BIPA; MCSG,PSI2, struct 99.2 1.4E-11 4.7E-16 92.0 4.1 36 1-37 84-119 (332)
13 3tr5_A RF-3, peptide chain rel 99.1 8E-11 2.7E-15 91.0 4.1 41 1-41 436-476 (528)
14 1j27_A Hypothetical protein TT 43.9 15 0.00052 22.6 2.3 21 10-30 26-46 (102)
15 1dd4_C 50S ribosomal protein L 28.3 26 0.0009 18.2 1.3 22 4-25 12-33 (40)
16 3clk_A Transcription regulator 27.8 20 0.00067 23.6 1.0 44 5-48 243-288 (290)
17 3f3b_A Phage-like element PBSX 20.5 8.7 0.0003 25.0 -1.8 20 19-38 24-43 (126)
18 1vig_A Vigilin; RNA-binding pr 20.1 60 0.002 17.8 1.9 18 14-31 27-44 (71)
No 1
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.79 E-value=2.1e-19 Score=142.16 Aligned_cols=64 Identities=30% Similarity=0.532 Sum_probs=60.6
Q ss_pred CeeeecHHHHHHHHHHHHhhcCceEEEecceeEEEEEecCcceeeEEEEeeeCCce-----EEEEEECC
Q psy11838 1 MKKRMGELHLEIIRDRILTEYKIEADLGPLQIAYKETVLSPAMASHEHKIKIGKSF-----RLRFRDDK 64 (78)
Q Consensus 1 ~l~gmGelHLEii~~rL~~e~~v~v~~g~p~V~YrEti~~~~~~~~~~~kq~gg~g-----~~~v~P~~ 64 (78)
+++|||||||||+++||+++||+++.+++|+|+|||||+++++..++|+||+||+| .++++|+.
T Consensus 449 il~g~Gelhlei~~~rL~~~~~v~v~~~~p~V~yrEti~~~~~~~~~~~kq~gg~~~~~~v~~~~ePl~ 517 (693)
T 2xex_A 449 IIGGMGELHLDILVDRMKKEFNVECNVGAPMVSYRETFKSSAQVQGKFSRQSGGRGQYGDVHIEFTPNE 517 (693)
T ss_dssp EEEESSHHHHHHHHHHHHHHSCCCEEECCCEECCEEEESSCEEEEEEEEECTTSSCEEEEEEEEEEECC
T ss_pred EEEeCCHHHHHHHHHHHHHHhCceEEEeCCeEEEEEEeccccceeEeeccccCCCCceEEEEEEEEECC
Confidence 47999999999999999999999999999999999999999999999999999997 48999974
No 2
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.76 E-value=9.7e-19 Score=138.66 Aligned_cols=63 Identities=33% Similarity=0.496 Sum_probs=59.7
Q ss_pred CeeeecHHHHHHHHHHHHhhcCceEEEecceeEEEEEecCcc-eeeEEEEeeeCCce-----EEEEEEC
Q psy11838 1 MKKRMGELHLEIIRDRILTEYKIEADLGPLQIAYKETVLSPA-MASHEHKIKIGKSF-----RLRFRDD 63 (78)
Q Consensus 1 ~l~gmGelHLEii~~rL~~e~~v~v~~g~p~V~YrEti~~~~-~~~~~~~kq~gg~g-----~~~v~P~ 63 (78)
+++|||||||||+++||+++||+++.+++|+|+|||||++++ +..++|+||+||+| .++++|+
T Consensus 457 il~g~GelhLei~~~rL~~~f~v~v~~~~p~V~yrEti~~~~~~~~~~~~kq~gg~~q~~~v~~~~ePl 525 (704)
T 2rdo_7 457 IIAGMGELHLDIIVDRMKREFNVEANVGKPQVAYRETIRQKVTDVEGKHAKQSGGRGQYGHVVIDMYPL 525 (704)
T ss_pred EEEeCCHHHHHHHHHHHHHHhCceEEEeCCEEEEEEeeccccccceeeeccccCCCCeeEEEEEEEEEC
Confidence 479999999999999999999999999999999999999988 89999999999987 4799997
No 3
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.73 E-value=4.6e-18 Score=133.83 Aligned_cols=63 Identities=25% Similarity=0.422 Sum_probs=59.5
Q ss_pred CeeeecHHHHHHHHHHHHhhcCceEEEecceeEEEEEecCcceeeEEEEeeeCCceE-----EEEEECC
Q psy11838 1 MKKRMGELHLEIIRDRILTEYKIEADLGPLQIAYKETVLSPAMASHEHKIKIGKSFR-----LRFRDDK 64 (78)
Q Consensus 1 ~l~gmGelHLEii~~rL~~e~~v~v~~g~p~V~YrEti~~~~~~~~~~~kq~gg~g~-----~~v~P~~ 64 (78)
+++|||||||||+++||+ +||+++.+++|+|+|||||++++++.++|+||+||+|+ ++++|+.
T Consensus 424 i~~g~Gelhlei~~~rl~-~~~v~v~~~~p~V~yrEti~~~~~~~~~~~k~~gg~g~~~~v~~~~eP~~ 491 (665)
T 2dy1_A 424 LLWGHGELHLATAKERLQ-DYGVEVEFSVPKVPYRETIKKVAEGQGKYKKQTGGHGQYGDVWLRLEPAS 491 (665)
T ss_dssp EEEESSHHHHHHHHHHHH-HTTCCEEEECCCCCCEEEESSCEEEEEEEEEEETTEEEEEEEEEEEEECS
T ss_pred EEEecCHHHHHHHHHHHH-HCCceEEEeCCEEEEEEeeccceeeeeecccccCCCcceEEEEEEEEECC
Confidence 479999999999999999 99999999999999999999999999999999999974 7999974
No 4
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.73 E-value=3e-19 Score=141.16 Aligned_cols=64 Identities=34% Similarity=0.556 Sum_probs=51.5
Q ss_pred CeeeecHHHHHHHHHHHHhhcCceEEEecceeEEEEEecCcceeeEEEEeeeCCce-----EEEEEECC
Q psy11838 1 MKKRMGELHLEIIRDRILTEYKIEADLGPLQIAYKETVLSPAMASHEHKIKIGKSF-----RLRFRDDK 64 (78)
Q Consensus 1 ~l~gmGelHLEii~~rL~~e~~v~v~~g~p~V~YrEti~~~~~~~~~~~kq~gg~g-----~~~v~P~~ 64 (78)
+++|||||||||+++||+++||+++.+++|+|+|||||+++++..++|+||+||+| .++++|+.
T Consensus 450 i~~g~Gelhlei~~~rL~~~~~v~v~~~~p~V~yrEti~~~~~~~~~~~kq~gg~~~~~~v~~~~ePl~ 518 (691)
T 1dar_A 450 IISGMGELHLEIIVDRLKREFKVDANVGKPQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLP 518 (691)
T ss_dssp EEEESCCC---------CCCEEEBTTTBCCCBCCEEECSSCEEEEEEEEECCSSSCEEEEEEEEEEECC
T ss_pred EEEeCCHHHHHHHHHHHHHhhCceEEEeCCeEEEEEeeccceeeeeeeccccCCCCceEEEEEEEEECC
Confidence 47999999999999999999999999999999999999999999999999999997 47999974
No 5
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.64 E-value=1.5e-16 Score=125.74 Aligned_cols=64 Identities=34% Similarity=0.554 Sum_probs=57.7
Q ss_pred CeeeecHHHHHHHHHHHHhhcCceEEEecceeEEEEEecCc-ceeeEEEEeeeCCceE-----EEEEECC
Q psy11838 1 MKKRMGELHLEIIRDRILTEYKIEADLGPLQIAYKETVLSP-AMASHEHKIKIGKSFR-----LRFRDDK 64 (78)
Q Consensus 1 ~l~gmGelHLEii~~rL~~e~~v~v~~g~p~V~YrEti~~~-~~~~~~~~kq~gg~g~-----~~v~P~~ 64 (78)
+|+|||||||||+++||+++||+++.+++|.|+|||||+++ ++..++|+||+||+|+ ++++|+.
T Consensus 460 vi~g~GELHLei~l~rLr~e~gvev~vs~P~V~yrETi~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~ 529 (709)
T 4fn5_A 460 IISGMGELHLDIIVDRMKREFGVEANIGKPQVAYRETITKDNVEIEGKFVRQSGGRGQFGHCWIRFSAAD 529 (709)
T ss_dssp EEEESCHHHHHHHHHHHHTTTCCCBCCBCCCCCCEEECCCCSEEEEEEEEEEETTEEEEEEEEEEEECCC
T ss_pred EEEEECHHHHHHHHHHHHHHhCceEEEeeceEEEEEEEecCCceecceeeeccCCcCcceeEEEEEeecc
Confidence 47999999999999999999999999999999999999875 4678999999999984 6777764
No 6
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.60 E-value=2.3e-17 Score=127.90 Aligned_cols=63 Identities=17% Similarity=0.185 Sum_probs=55.3
Q ss_pred CeeeecHHHHHHHHHHHHhhcCceEE-----EecceeEEEEEecCcceeeEEEEeeeCCce---EEEEEEC
Q psy11838 1 MKKRMGELHLEIIRDRILTEYKIEAD-----LGPLQIAYKETVLSPAMASHEHKIKIGKSF---RLRFRDD 63 (78)
Q Consensus 1 ~l~gmGelHLEii~~rL~~e~~v~v~-----~g~p~V~YrEti~~~~~~~~~~~kq~gg~g---~~~v~P~ 63 (78)
+|+|||||||||+++||+++||+++. ++.|+|+|||||+..+++.++|+||+|++| .+.+.|.
T Consensus 455 il~g~GeLHLeI~~erL~~ey~vev~~e~v~~~~P~V~YrEti~~~~~~~~~~kkq~g~~gq~~~V~L~~~ 525 (548)
T 3vqt_A 455 ILGAVGVLQFDVIVARLADEYGVDAVYEGVSTHTARWVYCEDKKIFADFQDYHRGELAVDAEGALAYLAPN 525 (548)
T ss_dssp EEEESSTHHHHHHHHHHHHHHCCCEEEEECSCCEEEEEECSCHHHHHHHHHHTGGGEEEETTSCEEEEESS
T ss_pred EEEEECHHHHHHHHHHHHHHhCCCEEEeeccccCceEEecCCccchhhhhhhhhheeeecCCCCEEEEecC
Confidence 47999999999999999999999976 477999999999999999999999999986 3445443
No 7
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.60 E-value=1.1e-16 Score=125.44 Aligned_cols=63 Identities=19% Similarity=0.280 Sum_probs=56.4
Q ss_pred CeeeecHHHHHHHHHHHHhhcCceEEEecceeEEEEEecCcceeeEEEEeeeCCce-----EEEEEECCC
Q psy11838 1 MKKRMGELHLEIIRDRILTEYKIEADLGPLQIAYKETVLSPAMASHEHKIKIGKSF-----RLRFRDDKT 65 (78)
Q Consensus 1 ~l~gmGelHLEii~~rL~~e~~v~v~~g~p~V~YrEti~~~~~~~~~~~kq~gg~g-----~~~v~P~~~ 65 (78)
+|+|||||||||+++||+++||+++.+++|+|+|||||++++ .+++++|+|+++ .+.++|+..
T Consensus 386 il~g~GeLHLei~~~rL~~efgvev~~~~P~V~yrEti~~~~--~~~~~~~~~~~~~~~~v~~~~eP~~~ 453 (638)
T 3j25_A 386 ILSFLGKVQMEVISALLQEKYHVEIELKEPTVIYMERPLKNA--EYTIHIEVPPNPFWASIGLSVSPLPL 453 (638)
T ss_dssp CCCCSSHHHHHHHHHHHTTTTCCCCEEECCCCCCCBCCCSCC--EECCCCCSSSCCCCCCCCEECCCCCS
T ss_pred EEccccHHHHHHHHHHHHHHhCCcEEEeCCceeEEEEecccc--eEEEEEecCCCCceEEEEEEEecccC
Confidence 478999999999999999999999999999999999998876 467888999886 588999754
No 8
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.55 E-value=1.7e-15 Score=122.01 Aligned_cols=63 Identities=27% Similarity=0.317 Sum_probs=51.5
Q ss_pred CeeeecHHHHHHHHHHHHhhc-CceEEEecceeEEEEEecCcceeeEEEEeeeCC--ceEEEEEECC
Q psy11838 1 MKKRMGELHLEIIRDRILTEY-KIEADLGPLQIAYKETVLSPAMASHEHKIKIGK--SFRLRFRDDK 64 (78)
Q Consensus 1 ~l~gmGelHLEii~~rL~~e~-~v~v~~g~p~V~YrEti~~~~~~~~~~~kq~gg--~g~~~v~P~~ 64 (78)
+|+|||||||||+++||+++| |+++.+++|+|+|||||+++++.....+. .+. ...++++|+.
T Consensus 529 il~g~GelHLei~~~rL~~~f~~vev~~~~P~V~yrETi~~~~~~~~~~~~-~~~~~~v~~~~ePl~ 594 (842)
T 1n0u_A 529 IVAGTGELHLEICLQDLEHDHAGVPLKISPPVVAYRETVESESSQTALSKS-PNKHNRIYLKAEPID 594 (842)
T ss_dssp EEEESSHHHHHHHHHHHHHTTSCSCEEEECCCCCCEEEESSCCSSCEEEEC-TTSSCEEEEEEEECC
T ss_pred EEEeccHHHHHHHHHHHHHHhcCCceEecCcEEEEEEeeccccccceeecc-CCcceEEEEEEEECc
Confidence 489999999999999999999 99999999999999999988865322221 111 3578999985
No 9
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.26 E-value=2.5e-12 Score=99.31 Aligned_cols=41 Identities=22% Similarity=0.389 Sum_probs=38.8
Q ss_pred CeeeecHHHHHHHHHHHHhhcCceEEEecceeEEEEEecCc
Q psy11838 1 MKKRMGELHLEIIRDRILTEYKIEADLGPLQIAYKETVLSP 41 (78)
Q Consensus 1 ~l~gmGelHLEii~~rL~~e~~v~v~~g~p~V~YrEti~~~ 41 (78)
+++|||+|||||+++||+++||+++.+++|+|+|||||..+
T Consensus 437 il~~~Gelhlev~~~rl~~ey~v~v~~~~~~v~y~eti~~~ 477 (529)
T 2h5e_A 437 IVGAVGVLQFDVVVARLKSEYNVEAVYESVNVATARWVECA 477 (529)
T ss_dssp EEEESSTHHHHHHHHHHHHHSSCCEEEECCCCSEEEEEECS
T ss_pred EEEEECHHHHHHHHHHHHHHhCcEEEEecCceeEEEEEcCC
Confidence 47999999999999999999999999999999999999654
No 10
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.21 E-value=2.2e-11 Score=95.86 Aligned_cols=37 Identities=24% Similarity=0.418 Sum_probs=35.6
Q ss_pred eecHHHHHHHHHHHHhhcCceEEEecceeEEEEEecC
Q psy11838 4 RMGELHLEIIRDRILTEYKIEADLGPLQIAYKETVLS 40 (78)
Q Consensus 4 gmGelHLEii~~rL~~e~~v~v~~g~p~V~YrEti~~ 40 (78)
+||+|||||+++||+++||+++.+++|+|+||||+++
T Consensus 344 ~~G~lHlei~~erl~re~~~~v~~~~P~V~yreti~~ 380 (600)
T 2ywe_A 344 FLGLLHMEIVQERLEREYGVKIITTAPNVIYRVKKKF 380 (600)
T ss_dssp ESSHHHHHHHHHHHHHHSCCCEEECCCEECEEEEETT
T ss_pred eccHHHHHHHHHHHHhhcCceEEEEeeeEEEEEEecC
Confidence 3999999999999999999999999999999999984
No 11
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.20 E-value=1.8e-11 Score=96.15 Aligned_cols=64 Identities=17% Similarity=0.169 Sum_probs=47.1
Q ss_pred eecHHHHHHHHHHHHhhcCceEEEecceeEEEEEecCcceeeEEEEeeeC----CceEEEEEECCCccee
Q psy11838 4 RMGELHLEIIRDRILTEYKIEADLGPLQIAYKETVLSPAMASHEHKIKIG----KSFRLRFRDDKTLAVK 69 (78)
Q Consensus 4 gmGelHLEii~~rL~~e~~v~v~~g~p~V~YrEti~~~~~~~~~~~kq~g----g~g~~~v~P~~~~~~~ 69 (78)
+||+|||||+++||+++||+++.+++|+|+||||+++..... +....+ +......||.-.++|.
T Consensus 342 ~lG~lhlei~~erl~~e~~~~~~~~~P~V~yreti~~g~~~~--~~~p~~~p~~~~~~~llEP~~~~~i~ 409 (599)
T 3cb4_D 342 FLGLLHMEIIQERLEREYDLDLITTAPTVVYEVETTSREVIY--VDSPSKLPAVNNIYELREPIAECHML 409 (599)
T ss_dssp ESSHHHHHHHHHHHHHTSCCCEEECCCEECEEEEESSSCEEE--ESSGGGSCCGGGEEEEEEEEEEEEEE
T ss_pred eccHHHHHHHHHHHHHHcCceEEEEeeeEEEEEEecCCceEE--ecChhhCCCccccchhhccceEEEEE
Confidence 399999999999999999999999999999999998754221 221111 1123567777666553
No 12
>3e3x_A BIPA; MCSG,PSI2, structural genomics, protein struct initiative, midwest center for structural genomics, GTP-BIN nucleotide-binding; HET: MLZ MLY; 1.95A {Vibrio parahaemolyticus}
Probab=99.17 E-value=1.4e-11 Score=91.97 Aligned_cols=36 Identities=25% Similarity=0.340 Sum_probs=34.7
Q ss_pred CeeeecHHHHHHHHHHHHhhcCceEEEecceeEEEEE
Q psy11838 1 MKKRMGELHLEIIRDRILTEYKIEADLGPLQIAYKET 37 (78)
Q Consensus 1 ~l~gmGelHLEii~~rL~~e~~v~v~~g~p~V~YrEt 37 (78)
+++|||||||+|+++||+++ |+++.+++|+|+||||
T Consensus 84 ~v~G~GELHLeIl~ErLrrE-g~ev~v~~P~V~YrEt 119 (332)
T 3e3x_A 84 RVSGRGELHLSILIENMRRE-GFELAVSRPEVIIXEE 119 (332)
T ss_dssp EEEESSHHHHHHHHHHHHHH-TBCEEECCCEECCEEE
T ss_pred EEEeeCHHHHHHHHHHHHhc-CceEEEeCCEEEEEEE
Confidence 37999999999999999999 9999999999999998
No 13
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.06 E-value=8e-11 Score=91.00 Aligned_cols=41 Identities=15% Similarity=0.340 Sum_probs=38.8
Q ss_pred CeeeecHHHHHHHHHHHHhhcCceEEEecceeEEEEEecCc
Q psy11838 1 MKKRMGELHLEIIRDRILTEYKIEADLGPLQIAYKETVLSP 41 (78)
Q Consensus 1 ~l~gmGelHLEii~~rL~~e~~v~v~~g~p~V~YrEti~~~ 41 (78)
+|+|||+|||||+++||+++||+++.+++|+|+|+++|..+
T Consensus 436 il~~~G~lhlev~~~rL~~ey~v~v~~~~~~v~~~~~i~~~ 476 (528)
T 3tr5_A 436 ILGAVGLLQFDVVAYRLENEYNVKCVYESVNVVTARWVICD 476 (528)
T ss_dssp EEEESSTHHHHHHHHHHHHHHCCCEEEECCSCCEEEEEECS
T ss_pred EEEEEcHHHHHHHHHHHHHHhCcEEEEecCceEEEEEecCC
Confidence 47999999999999999999999999999999999999764
No 14
>1j27_A Hypothetical protein TT1725; structural genomics, hypothetical protein from thermus therm HB8, MAD; 1.70A {Thermus thermophilus} SCOP: d.58.50.1
Probab=43.93 E-value=15 Score=22.57 Aligned_cols=21 Identities=10% Similarity=0.055 Sum_probs=15.7
Q ss_pred HHHHHHHHHhhcCceEEEecc
Q psy11838 10 LEIIRDRILTEYKIEADLGPL 30 (78)
Q Consensus 10 LEii~~rL~~e~~v~v~~g~p 30 (78)
+.-+++||+++|++.+-=...
T Consensus 26 vksl~~rlr~rFnVSvAEv~~ 46 (102)
T 1j27_A 26 IKPALERLKARFPVSAARLYG 46 (102)
T ss_dssp HHHHHHHHHHHSSCEEEEEEC
T ss_pred HHHHHHHHhhcCCeEEEEecC
Confidence 456889999999998754433
No 15
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=28.31 E-value=26 Score=18.16 Aligned_cols=22 Identities=9% Similarity=0.255 Sum_probs=16.6
Q ss_pred eecHHHHHHHHHHHHhhcCceE
Q psy11838 4 RMGELHLEIIRDRILTEYKIEA 25 (78)
Q Consensus 4 gmGelHLEii~~rL~~e~~v~v 25 (78)
+|--+.+.=+.+.|+++||++.
T Consensus 12 ~lTvlE~~eLvk~leekfGVsa 33 (40)
T 1dd4_C 12 KLTVSELAELVKKLEDKFGVTA 33 (40)
T ss_dssp TSCHHHHHHHHHHHHHHTCCCS
T ss_pred hCcHHHHHHHHHHHHHHHCCCc
Confidence 3445566678899999999974
No 16
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=27.79 E-value=20 Score=23.62 Aligned_cols=44 Identities=14% Similarity=0.238 Sum_probs=24.1
Q ss_pred ecHHHHHHHHHHHHhhc--CceEEEecceeEEEEEecCcceeeEEE
Q psy11838 5 MGELHLEIIRDRILTEY--KIEADLGPLQIAYKETVLSPAMASHEH 48 (78)
Q Consensus 5 mGelHLEii~~rL~~e~--~v~v~~g~p~V~YrEti~~~~~~~~~~ 48 (78)
||..=.+.++++|..+- .-....-+|.+..|+|.....+.+++|
T Consensus 243 ~g~~av~~l~~~i~~~~~~~~~~~~~~~~li~r~s~~~~~~~~~~~ 288 (290)
T 3clk_A 243 MGVTGVQQIHQSVKNGSNRIVSQQFIPVNPVIRKSTARLGEGHHHH 288 (290)
T ss_dssp HHHHHHHHHHHHTC-----CCCEEECCCEEECCSSCCCC-------
T ss_pred HHHHHHHHHHHHHhcCCcCCCccEEeccEEEecccccccccccccc
Confidence 67777788888876652 123344568888899987777665443
No 17
>3f3b_A Phage-like element PBSX protein XKDH; NESG X-RAY SR362 P54328 structure, structural genomics, PSI- 2, protein structure initiative; 2.50A {Bacillus subtilis}
Probab=20.52 E-value=8.7 Score=24.96 Aligned_cols=20 Identities=30% Similarity=0.318 Sum_probs=18.0
Q ss_pred hhcCceEEEecceeEEEEEe
Q psy11838 19 TEYKIEADLGPLQIAYKETV 38 (78)
Q Consensus 19 ~e~~v~v~~g~p~V~YrEti 38 (78)
-+||+++.-.+|..+|.+|+
T Consensus 24 gkfGIP~e~lqp~~sYpdtP 43 (126)
T 3f3b_A 24 GRFGIPADRLQPVISYPDTP 43 (126)
T ss_dssp BTTTBCCCTTSCEEECCSSC
T ss_pred cccCCChhhcCcccccCCCC
Confidence 36999999999999999995
No 18
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=20.10 E-value=60 Score=17.85 Aligned_cols=18 Identities=28% Similarity=0.504 Sum_probs=15.1
Q ss_pred HHHHHhhcCceEEEecce
Q psy11838 14 RDRILTEYKIEADLGPLQ 31 (78)
Q Consensus 14 ~~rL~~e~~v~v~~g~p~ 31 (78)
+.+|++++|+.+.+.+.-
T Consensus 27 I~~I~e~tg~~I~i~~~g 44 (71)
T 1vig_A 27 INRIKDQYKVSVRIPPDS 44 (71)
T ss_dssp HHHHHHHTCCEEECCCCC
T ss_pred HHHHHHHHCCEEEECCCC
Confidence 578999999999998754
Done!