RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11838
         (78 letters)



>d2bv3a4 d.58.11.1 (A:404-478) Elongation factor G (EF-G) {Thermus
          thermophilus [TaxId: 274]}
          Length = 75

 Score = 38.6 bits (90), Expect = 3e-06
 Identities = 14/24 (58%), Positives = 20/24 (83%)

Query: 5  MGELHLEIIRDRILTEYKIEADLG 28
          MGEL LEII DR+  E+K++A++G
Sbjct: 51 MGELSLEIIVDRLKREFKVDANVG 74


>d2dy1a4 d.58.11.1 (A:378-454) Elongation factor G (EF-G) {Thermus
          thermophilus, EF-G-2 [TaxId: 274]}
          Length = 77

 Score = 29.5 bits (66), Expect = 0.013
 Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 1/29 (3%)

Query: 4  RMGELHLEIIRDRILTEYKIEADLGPLQI 32
            GELHL   ++R L +Y +E +    ++
Sbjct: 50 GHGELHLATAKER-LQDYGVEVEFSVPKV 77


>d1n0ua4 d.58.11.1 (A:482-560) Elongation factor 2 (eEF-2)
          {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
          4932]}
          Length = 79

 Score = 29.1 bits (65), Expect = 0.014
 Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 1/26 (3%)

Query: 5  MGELHLEIIRDRILTEY-KIEADLGP 29
           GELHLEI    +  ++  +   + P
Sbjct: 52 TGELHLEICLQDLEHDHAGVPLKISP 77


>d2bv3a3 d.14.1.1 (A:479-599) Elongation factor G (EF-G), domain
          IV {Thermus thermophilus [TaxId: 274]}
          Length = 121

 Score = 27.6 bits (61), Expect = 0.10
 Identities = 7/25 (28%), Positives = 12/25 (48%)

Query: 31 QIAYKETVLSPAMASHEHKIKIGKS 55
          Q+AY+ET+  P     +   + G  
Sbjct: 2  QVAYRETITKPVDVEGKFIRQTGGR 26


>d1x9na2 b.40.4.6 (A:754-901) DNA ligase I (LIG1) {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 148

 Score = 26.1 bits (57), Expect = 0.31
 Identities = 14/90 (15%), Positives = 29/90 (32%), Gaps = 15/90 (16%)

Query: 3   KRMGELHLEIIRDRILTEYKIEADLGP---------LQIAYKETVLSPAMASHEHKIKIG 53
           +   +    ++        +I+  + P          ++   +  LSP   +    +   
Sbjct: 53  EEHHQSLKALVLPSPRPYVRIDGAVIPDHWLDPSAVWEVKCADLSLSPIYPAARGLVDSD 112

Query: 54  KSFRLRF------RDDKTLAVKTSVAECED 77
           K   LRF      R+DK     T+ A+   
Sbjct: 113 KGISLRFPRFIRVREDKQPEQATTSAQVAC 142


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.135    0.372 

Gapped
Lambda     K      H
   0.267   0.0602    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 268,705
Number of extensions: 9919
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 7
Length of query: 78
Length of database: 2,407,596
Length adjustment: 45
Effective length of query: 33
Effective length of database: 1,789,746
Effective search space: 59061618
Effective search space used: 59061618
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.2 bits)