Query psy11841
Match_columns 238
No_of_seqs 121 out of 250
Neff 5.8
Searched_HMMs 46136
Date Fri Aug 16 20:18:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11841.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11841hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4026|consensus 100.0 7.7E-56 1.7E-60 378.6 17.5 193 17-209 1-197 (207)
2 PF10242 L_HGMIC_fpl: Lipoma H 100.0 3E-49 6.6E-54 336.6 15.9 173 25-197 1-181 (181)
3 PF13903 Claudin_2: PMP-22/EMP 99.5 1.4E-13 3E-18 112.8 9.1 151 35-192 2-171 (172)
4 KOG4671|consensus 99.4 7.5E-13 1.6E-17 112.5 10.9 162 17-193 12-180 (201)
5 PF00822 PMP22_Claudin: PMP-22 99.4 8.1E-13 1.7E-17 108.7 10.5 148 34-190 13-165 (166)
6 PF07062 Clc-like: Clc-like; 99.1 5.3E-10 1.1E-14 97.9 9.9 160 28-193 6-202 (211)
7 PF06653 Claudin_3: Tight junc 98.3 2.3E-05 4.9E-10 65.9 14.2 141 33-197 12-160 (163)
8 PF06687 SUR7: SUR7/PalI famil 95.8 0.12 2.6E-06 44.0 10.7 119 30-148 6-176 (212)
9 PF07344 Amastin: Amastin surf 91.0 2 4.4E-05 35.6 8.9 87 88-187 61-151 (155)
10 PF15108 TMEM37: Voltage-depen 89.5 2.1 4.5E-05 36.5 7.7 125 11-143 12-141 (184)
11 PTZ00201 amastin surface glyco 88.5 6.4 0.00014 34.3 10.3 94 88-190 73-169 (192)
12 PHA03048 IMV membrane protein; 65.0 12 0.00025 28.9 4.0 35 119-159 40-74 (93)
13 COG1338 FliP Flagellar biosynt 61.9 27 0.00058 31.6 6.4 59 169-227 41-110 (248)
14 PF07803 GSG-1: GSG1-like prot 61.2 11 0.00024 30.4 3.4 26 27-52 9-34 (118)
15 PRK09617 type III secretion sy 56.2 32 0.0007 31.1 5.9 35 194-228 57-91 (243)
16 TIGR01102 yscR type III secret 55.5 32 0.00069 30.3 5.6 35 194-228 30-64 (202)
17 PF14985 TM140: TM140 protein 50.0 1E+02 0.0022 26.3 7.6 88 55-143 40-130 (181)
18 PRK05699 fliP flagellar biosyn 48.9 48 0.001 30.0 5.8 34 194-227 74-107 (245)
19 PRK14485 putative bifunctional 48.1 3.5E+02 0.0075 28.3 14.3 40 12-51 6-45 (712)
20 PRK12783 fliP flagellar biosyn 47.1 49 0.0011 30.1 5.6 34 194-227 82-115 (255)
21 TIGR01103 fliP flagellar biosy 46.7 50 0.0011 29.0 5.5 33 195-227 28-60 (197)
22 PRK12796 spaP type III secreti 45.8 50 0.0011 29.5 5.4 34 194-227 36-69 (221)
23 PF00813 FliP: FliP family; I 44.6 55 0.0012 28.7 5.4 34 194-227 27-60 (194)
24 PRK12430 putative bifunctional 44.3 52 0.0011 31.6 5.6 34 194-227 207-240 (379)
25 PF10204 DuoxA: Dual oxidase m 41.8 49 0.0011 30.6 4.9 64 121-193 194-261 (281)
26 PF06197 DUF998: Protein of un 41.6 1.9E+02 0.0041 23.5 11.6 59 85-148 36-94 (184)
27 PRK12797 type III secretion sy 39.6 1.2E+02 0.0026 26.9 6.8 40 194-233 39-78 (213)
28 PRK12585 putative monovalent c 35.7 97 0.0021 27.2 5.5 48 92-143 9-58 (197)
29 PF13828 DUF4190: Domain of un 30.9 1.9E+02 0.0042 20.4 5.6 45 172-217 4-51 (62)
30 PF05478 Prominin: Prominin; 30.7 2.2E+02 0.0048 29.8 8.2 30 12-47 28-57 (806)
31 PHA02680 ORF090 IMV phosphoryl 29.6 84 0.0018 24.2 3.6 29 119-148 42-70 (91)
32 PF12273 RCR: Chitin synthesis 27.8 77 0.0017 25.2 3.4 12 171-182 1-12 (130)
33 KOG4016|consensus 25.8 2E+02 0.0042 25.8 5.8 49 115-173 21-73 (233)
34 PHA02898 virion envelope prote 23.7 1.5E+02 0.0033 22.9 4.1 34 119-158 41-74 (92)
35 PF02060 ISK_Channel: Slow vol 23.3 2.1E+02 0.0045 23.5 5.1 35 167-201 39-74 (129)
36 PF14991 MLANA: Protein melan- 22.8 15 0.00032 29.6 -1.6 30 96-125 27-56 (118)
37 PF15201 Rod_cone_degen: Progr 22.0 1E+02 0.0022 21.2 2.5 26 184-209 5-31 (54)
38 COG3162 Predicted membrane pro 21.4 78 0.0017 24.9 2.2 36 169-204 59-95 (102)
39 PF01102 Glycophorin_A: Glycop 20.3 97 0.0021 25.1 2.6 11 195-205 88-98 (122)
40 PF11893 DUF3413: Domain of un 20.1 6.3E+02 0.014 22.6 10.8 101 115-223 79-184 (253)
No 1
>KOG4026|consensus
Probab=100.00 E-value=7.7e-56 Score=378.60 Aligned_cols=193 Identities=40% Similarity=0.827 Sum_probs=182.6
Q ss_pred hhcccchhHHHHHHHHHHHHHHHHHHHhcCCcccccC---CCceeecccccccccccc-cccccccccccccChhhHHHH
Q psy11841 17 NYVRNSKAVGVLWGIFTLCFALIVSVAFLTPEWIGIA---NKGRLGLWSSCEFDVNGF-EECTGKFAEFMEISNAAFKIS 92 (238)
Q Consensus 17 ~y~r~s~~vgvlW~~lsl~aail~~vaf~tP~Wl~~~---~~~~fGL~~~C~~~~~~~-~~C~g~~~~f~~ip~~~Wkaa 92 (238)
+|+||+|++|++|+++|+|++++..++|+||+|++++ +++|||+|++|.++.... -+|.+++.+++++|+.+||++
T Consensus 1 ~y~rn~~~~gviW~l~t~c~a~l~~v~fi~P~Wig~~~~~~~g~fGl~~~C~~~~~~~~~~~~~~~~~~~~ips~~~~~a 80 (207)
T KOG4026|consen 1 MYYRNSRAVGVIWALCTICFAVLFMVAFIQPYWIGDSVNGKPGSFGLFTYCVGPVLPGSLECRGRLASFSSIPSNEFKLA 80 (207)
T ss_pred CeeehhhHHHHHHHHHHHHHHHHHHHHhccceeccCCcCCCCccccceeeccCCCCCCcccccCCccccccCCcHHHHHH
Confidence 6999999999999999999999999999999999883 577999999999986432 378899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhhhheEEeeCCCCchhhhhhhCCCCCCCcCCCCCcch
Q psy11841 93 TVLCLVSVTLALVTIAVMLLFFFMQPTSVYMVAAWLQIISALCMIASVVIYPLGWESAKAQEICGPTASRYNLGQCDIKW 172 (238)
Q Consensus 93 ~~f~~~g~~llll~il~~ll~~~c~~~~v~~i~g~lq~~A~l~~~lglvlfP~Gw~s~~V~~~CG~~a~~y~lG~C~lGW 172 (238)
++|+..|+.++++++.+..+..+|++++++++|||+|.+|++|+++||++||.||||+||||+||.++++|++|+|++||
T Consensus 81 ~f~vlla~~Lill~i~~~~l~~~c~~~si~~~cg~~q~~a~l~milGc~lyP~GW~s~~vr~~CG~~a~ky~lG~CsIgW 160 (207)
T KOG4026|consen 81 AFFVLLAFVLILLLIVFLALLGCCRSKSIFNMCGWMQGIAGLCMILGCALYPDGWDSPEVRRMCGAKAGKYYLGDCSIGW 160 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHhcCCccCCHHHHHHhccccCCccCccccccH
Confidence 99999999999988888888888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhh
Q psy11841 173 AYILAIIGCLDVIVLAILAFILATRHIKLQPEPLYVA 209 (238)
Q Consensus 173 ay~lAiig~~~~~~~a~L~~~~a~~~~k~~~~~~~~~ 209 (238)
+|++|++|++++++++.|++++++||++++||+.++|
T Consensus 161 aY~lAIig~~daliL~~lsf~l~~k~~~~~p~~~~~~ 197 (207)
T KOG4026|consen 161 AYYLAIIGILDALILAFLSFVLGTKQQRLLPEESKAE 197 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCcccchhhhc
Confidence 9999999999999999999999999999999998765
No 2
>PF10242 L_HGMIC_fpl: Lipoma HMGIC fusion partner-like protein; InterPro: IPR019372 This is a group of proteins expressed from a series of genes referred to as Lipoma HGMIC fusion partner-like. The proteins carry four highly conserved transmembrane domains. In certain instances, as in LHFPL5, mutations cause deafness in humans [] or hypospadias []. LHFPL1 is transcribed in six liver tumour cell lines [].
Probab=100.00 E-value=3e-49 Score=336.64 Aligned_cols=173 Identities=35% Similarity=0.823 Sum_probs=155.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCccccc----CCCceeecccccc-cccccccccccccccccccChhhHHHHHHHHHHH
Q psy11841 25 VGVLWGIFTLCFALIVSVAFLTPEWIGI----ANKGRLGLWSSCE-FDVNGFEECTGKFAEFMEISNAAFKISTVLCLVS 99 (238)
Q Consensus 25 vgvlW~~lsl~aail~~vaf~tP~Wl~~----~~~~~fGL~~~C~-~~~~~~~~C~g~~~~f~~ip~~~Wkaa~~f~~~g 99 (238)
+|++|+++|++++++++++|++|+|+++ +.+++||||+||. +....+++|.++.++|.++|+.+||++++|+++|
T Consensus 1 vgvlW~llsl~~ail~~vsfi~P~Wl~~~~~~~~~~sfGlf~rC~~~~~~~~~~C~~~~~~f~~iPs~~Wkaa~~~~~~g 80 (181)
T PF10242_consen 1 VGVLWALLSLCAAILCVVSFISPYWLGGSESTPYSGSFGLFRRCSGQMDEWEQECGGYAESFGDIPSSAWKAAAFFVGIG 80 (181)
T ss_pred CccHHHHHHHHHHHHHHHHHcCchhccCCcCCCCCceEEeehhhCcCCCCCCCccCCcCCCccccCcHHHHHHHHHHHHH
Confidence 5899999999999999999999999975 3578999999999 3333346998776799999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcc---CchhhHHHHHHHHHHHHHhhhheEEeeCCCCchhhhhhhCCCCCCCcCCCCCcchHHHH
Q psy11841 100 VTLALVTIAVMLLFFFMQ---PTSVYMVAAWLQIISALCMIASVVIYPLGWESAKAQEICGPTASRYNLGQCDIKWAYIL 176 (238)
Q Consensus 100 ~~llll~il~~ll~~~c~---~~~v~~i~g~lq~~A~l~~~lglvlfP~Gw~s~~V~~~CG~~a~~y~lG~C~lGWay~l 176 (238)
++++.++.+..++++|.+ +|+++++++|+|++|++++++|+++||.||||+||||.||+++++|++|+|++||+|++
T Consensus 81 ~~Ll~~~~~~~L~~~c~~~~~~~sv~~i~g~~Q~~A~l~~~~g~~~yP~Gw~s~~v~~~CG~~s~~y~~g~C~~gwa~~l 160 (181)
T PF10242_consen 81 CVLLLLIALLSLFSCCFRSICSRSVFKICGWLQFVAGLCLLLGCLLYPAGWDSPEVRQLCGPDSDPYKLGDCSLGWAYYL 160 (181)
T ss_pred HHHHHHHHHHHHHHHHHhccCCceEeeechHHHHHHHHHHHHhheeecCccCCcHHHhhhcCCCCceeCCCCCCChHHHH
Confidence 999776665555555432 59999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q psy11841 177 AIIGCLDVIVLAILAFILATR 197 (238)
Q Consensus 177 Aiig~~~~~~~a~L~~~~a~~ 197 (238)
|++|++++++++.+++++++|
T Consensus 161 a~~~~~~~~~l~~~~~~l~~~ 181 (181)
T PF10242_consen 161 AIIGVADALLLSFLAFVLSNR 181 (181)
T ss_pred HHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999876
No 3
>PF13903 Claudin_2: PMP-22/EMP/MP20/Claudin tight junction
Probab=99.48 E-value=1.4e-13 Score=112.78 Aligned_cols=151 Identities=16% Similarity=0.297 Sum_probs=109.1
Q ss_pred HHHHHHHHHhcCCccccc----CC--------------CceeecccccccccccccccccccccccccChhhHHHHHHHH
Q psy11841 35 CFALIVSVAFLTPEWIGI----AN--------------KGRLGLWSSCEFDVNGFEECTGKFAEFMEISNAAFKISTVLC 96 (238)
Q Consensus 35 ~aail~~vaf~tP~Wl~~----~~--------------~~~fGL~~~C~~~~~~~~~C~g~~~~f~~ip~~~Wkaa~~f~ 96 (238)
++.++.++|+.||+|+.. ++ ..+.|+|++|.+.+... +-. . .+.-+...+.++.+.
T Consensus 2 la~~L~~ia~~T~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~Glw~~c~~~~~~~-~~~-~----~~~~~~~~~~~~~~~ 75 (172)
T PF13903_consen 2 LALILLIIAFGTPYWVVSDPRRTGFNCTESNNSVNFGLFSHSGLWRICFQREYDS-SNR-N----ETTNPHWMRATIAFL 75 (172)
T ss_pred hHHHHHHHHHcCchHhEEeeeccCccccccccccccccccccCcceEeecCCcCc-ccc-h----hhhhHHHHHHHHHHH
Confidence 567788999999999965 11 12579999998764220 110 0 233344577888889
Q ss_pred HHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhhhheEEeeCCCCchhhhhhhC-CCCCCCcCCCCCcchHHH
Q psy11841 97 LVSVTLALVTIAVMLLFFFMQPTSVYMVAAWLQIISALCMIASVVIYPLGWESAKAQEICG-PTASRYNLGQCDIKWAYI 175 (238)
Q Consensus 97 ~~g~~llll~il~~ll~~~c~~~~v~~i~g~lq~~A~l~~~lglvlfP~Gw~s~~V~~~CG-~~a~~y~lG~C~lGWay~ 175 (238)
.+|+++.+++.++.+..+++++++.++..+.+.++|+++.++++++|+...+.+ .++.-- ...++.+..+.++||||+
T Consensus 76 ~l~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~l~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~gwSf~ 154 (172)
T PF13903_consen 76 ILGLLLLLFAFVFALIGFCKRSYTLYLFAGILFILAGLCILIALIVFVVSVNYE-IEINFPQWPPDPPSPFSYSYGWSFW 154 (172)
T ss_pred HHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhcccccCccCeeEEECHHHH
Confidence 999999988888887777777788889999999999999999999998877643 211110 011223333579999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy11841 176 LAIIGCLDVIVLAILAF 192 (238)
Q Consensus 176 lAiig~~~~~~~a~L~~ 192 (238)
++++|+++.+++++|..
T Consensus 155 la~~a~~~~l~a~~l~l 171 (172)
T PF13903_consen 155 LAWVAFILLLLAGILFL 171 (172)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999998854
No 4
>KOG4671|consensus
Probab=99.44 E-value=7.5e-13 Score=112.45 Aligned_cols=162 Identities=19% Similarity=0.303 Sum_probs=113.3
Q ss_pred hhcccchhHHHHHHHHHHHHHHHHHHHhcCCcccccCCCceeeccccccccccc------ccccccccccccccChhhHH
Q psy11841 17 NYVRNSKAVGVLWGIFTLCFALIVSVAFLTPEWIGIANKGRLGLWSSCEFDVNG------FEECTGKFAEFMEISNAAFK 90 (238)
Q Consensus 17 ~y~r~s~~vgvlW~~lsl~aail~~vaf~tP~Wl~~~~~~~fGL~~~C~~~~~~------~~~C~g~~~~f~~ip~~~Wk 90 (238)
..+|+.|.+..+..+.+++.+ ++|+.+|.|+.+++ .+-|||.+|.++... +.+|. +....+..+
T Consensus 12 r~~~plk~i~licl~~aial~---IvAl~s~~Wl~as~-~~q~Lw~~C~~~~~~~~~pfd~~~C~------s~~~~~~~~ 81 (201)
T KOG4671|consen 12 RWILPLKLILLICLLSAIALD---IVALASRGWLQASD-QRQGLWWSCRKPASTHAAPFDPGGCQ------STLEVDGGR 81 (201)
T ss_pred EEEEechHHHHHHHHHHHHHH---HHHhccchhhhcCC-CCcceeeeecCcCCcCCCCcCCccCc------ChhhcchHH
Confidence 357788888765555555544 89999999998754 445799999987431 23786 334455567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccC-chhhHHHHHHHHHHHHHhhhheEEeeCCCCchhhhhhhCCCCCCCcCCCCC
Q psy11841 91 ISTVLCLVSVTLALVTIAVMLLFFFMQP-TSVYMVAAWLQIISALCMIASVVIYPLGWESAKAQEICGPTASRYNLGQCD 169 (238)
Q Consensus 91 aa~~f~~~g~~llll~il~~ll~~~c~~-~~v~~i~g~lq~~A~l~~~lglvlfP~Gw~s~~V~~~CG~~a~~y~lG~C~ 169 (238)
+++.++..|.+++.++..+.+...|.+. .+.+|+++.+.+.++++.++++++||..+..+.-... ..+-.|. -.
T Consensus 82 aaAAmL~~g~~i~~I~filgl~~~cv~~~~~fyRvi~~~l~laaV~qi~sLvIyPVk~~~~~tl~~--~pa~~~~---~~ 156 (201)
T KOG4671|consen 82 AAAAMLFIGAAILVICFILGLFALCVPLKLVFYRVIGGLLFLAAVLQIISLVIYPVKYTETFTLHA--NPAVTYV---SI 156 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcceEEeeeHHHHHHHHHHHHHhheeEEeeeeeeeeeeeec--ccceeee---cc
Confidence 7777777777777666555555555554 6778999999999999999999999999974432111 0111111 11
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHH
Q psy11841 170 IKWAYILAIIGCLDVIVLAILAFI 193 (238)
Q Consensus 170 lGWay~lAiig~~~~~~~a~L~~~ 193 (238)
-.|+|++++..++.++.+++|...
T Consensus 157 ~~WayG~~WgAtifl~G~a~l~~c 180 (201)
T KOG4671|consen 157 DNWAYGFGWGATIFLIGAAFLLCC 180 (201)
T ss_pred cccccchhHHHHHHHhhhhHhhee
Confidence 229999999999999999988554
No 5
>PF00822 PMP22_Claudin: PMP-22/EMP/MP20/Claudin family; InterPro: IPR004031 Several vertebrate small integral membrane glycoproteins are evolutionary related [, , ], including eye lens specific membrane protein 20 (MP20 or MP19); epithelial membrane protein-1 (EMP-1), which is also known as tumor-associated membrane protein (TMP) or as squamous cell-specific protein Cl-20; epithelial membrane protein-2 (EMP-2), which is also known as XMP; epithelial membrane protein-3 (EMP-3), also known as YMP; and peripheral myelin protein 22 (PMP-22), which is expressed in many tissues but mainly by Schwann cells as a component of myelin of the peripheral nervous system (PNS). PMP-22 probably plays a role both in myelinization and in cell proliferation. Mutations affecting PMP-22 are associated with hereditary motor and sensory neuropathies such as Charcot-Marie-Tooth disease type 1A (CMT-1A) in human or the trembler phenotype in mice. The proteins of this family are about 160 to 173 amino acid residues in size, and contain four transmembrane segments. PMP-22, EMP-1, -2 and -3 are highly similar, while MP20 is more distantly related. This family also includes the claudins, which are components of tight junctions.; GO: 0016020 membrane
Probab=99.44 E-value=8.1e-13 Score=108.73 Aligned_cols=148 Identities=20% Similarity=0.376 Sum_probs=111.0
Q ss_pred HHHHHHHHHHhcCCcccccCCC---ceeeccccccccc-ccccccccccccccccChhhHHHHHHHHHHHHHHHHHHHHH
Q psy11841 34 LCFALIVSVAFLTPEWIGIANK---GRLGLWSSCEFDV-NGFEECTGKFAEFMEISNAAFKISTVLCLVSVTLALVTIAV 109 (238)
Q Consensus 34 l~aail~~vaf~tP~Wl~~~~~---~~fGL~~~C~~~~-~~~~~C~g~~~~f~~ip~~~Wkaa~~f~~~g~~llll~il~ 109 (238)
+...++.+++..+|+|..++.. .+.|||++|.... .+..+|. .++++.+.|+ ..|++..++.+++++..++.++
T Consensus 13 ~~~~~~liva~~~~~W~~~~~~~~~~~~GLW~~C~~~~~~~~~~c~-~~~~~~~~~~-~~~a~r~l~i~s~il~~l~~~l 90 (166)
T PF00822_consen 13 LGWLALLIVATATPYWRVSNVSGQSRWSGLWRECIQQSCTGSTQCD-SYDSFLSLPG-YLQAARALMILSIILGFLGLIL 90 (166)
T ss_pred HHHHHHHHHHcCchHheEecCcCccceeCCccccCCcCcCceeccc-ccCcccchhH-HHHHHHHHhHHHHHHHHHHHHH
Confidence 3344467889999999977544 4899999999875 3334895 5677776555 5999999999999988888777
Q ss_pred HHHHHhc-cCchhhHHHHHHHHHHHHHhhhheEEeeCCCCchhhhhhhCCCCCCCcCCCCCcchHHHHHHHHHHHHHHHH
Q psy11841 110 MLLFFFM-QPTSVYMVAAWLQIISALCMIASVVIYPLGWESAKAQEICGPTASRYNLGQCDIKWAYILAIIGCLDVIVLA 188 (238)
Q Consensus 110 ~ll~~~c-~~~~v~~i~g~lq~~A~l~~~lglvlfP~Gw~s~~V~~~CG~~a~~y~lG~C~lGWay~lAiig~~~~~~~a 188 (238)
......| +.+.-.+..|.+.++|+++..+++..|+..-.++.-+ ..+...+=+.||||++++++.+++++++
T Consensus 91 ~~~g~~~~~~~~~~~~ag~l~~~agl~~l~~~~~y~~~~~~~~~~-------~~~~~~~~~~G~s~~lgW~~~~l~~~~G 163 (166)
T PF00822_consen 91 ALFGLCCTKRGPRPKVAGILFILAGLCLLIAVSWYTAVIVQEFSD-------PSRPNIKYEFGWSFYLGWVAFILLLLSG 163 (166)
T ss_pred HHhcccccccCCCCCcceeeeHHHhhhhheeEEEEeccCchhhcc-------ccCCCCcEEehHHHHHHHHHHHHHHHHH
Confidence 6666555 3344455699999999999999999997765433221 1111345689999999999999999998
Q ss_pred HH
Q psy11841 189 IL 190 (238)
Q Consensus 189 ~L 190 (238)
++
T Consensus 164 ~l 165 (166)
T PF00822_consen 164 IL 165 (166)
T ss_pred Hh
Confidence 76
No 6
>PF07062 Clc-like: Clc-like; InterPro: IPR010761 Clc proteins are a nine-member gene family of chloride channels that have diverse roles in the plasma membrane and in intracellular organelles, especially membrane excitability and the maintenance of osmotic balance [, ]. This family contains a number of Clc-like proteins that are approximately 250 residues long and their homologues. ; GO: 0016021 integral to membrane
Probab=99.09 E-value=5.3e-10 Score=97.88 Aligned_cols=160 Identities=17% Similarity=0.249 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCcc-ccc----CCCceeecccccccccc----------ccccccccccccc----------
Q psy11841 28 LWGIFTLCFALIVSVAFLTPEW-IGI----ANKGRLGLWSSCEFDVN----------GFEECTGKFAEFM---------- 82 (238)
Q Consensus 28 lW~~lsl~aail~~vaf~tP~W-l~~----~~~~~fGL~~~C~~~~~----------~~~~C~g~~~~f~---------- 82 (238)
.=.++++++.++..+++.||.| +.+ ....+-|||+.|.+++. ++..|..++|.-.
T Consensus 6 ~s~vl~lig~~L~~~al~SPsWQvv~~~e~~~~h~hGLW~dC~~~~~~~~~~~~~~~~~~~C~ykFd~~~~~~y~~~~~~ 85 (211)
T PF07062_consen 6 FSFVLILIGLILTFIALFSPSWQVVNIREFRAYHQHGLWLDCQRPESHLLARDDDDEGPLHCTYKFDYDDEQNYDEKVDN 85 (211)
T ss_pred HHHHHHHHHHHHHHHHHcCCceEEEEecccCcEEecceeeecCCccccccchhcccCCCceEEEEcCccHHHHHHHHHhh
Confidence 3457899999999999999999 444 23456899999997654 2237876644211
Q ss_pred ---cc-------C-hhhHHHHHHH-HHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhhhheEEeeCCCCch
Q psy11841 83 ---EI-------S-NAAFKISTVL-CLVSVTLALVTIAVMLLFFFMQPTSVYMVAAWLQIISALCMIASVVIYPLGWESA 150 (238)
Q Consensus 83 ---~i-------p-~~~Wkaa~~f-~~~g~~llll~il~~ll~~~c~~~~v~~i~g~lq~~A~l~~~lglvlfP~Gw~s~ 150 (238)
+- | -..|+.+++. +..++++.++++++.....|.++.. ......-++|++|..+|.++|=.--+..
T Consensus 86 ~~~~~~~~~~~~h~F~gWh~AvLil~~~s~lf~~lsi~~~iCa~c~~~~a--i~~~v~~~ia~l~S~~g~~iF~~~a~~~ 163 (211)
T PF07062_consen 86 CDGNSNVGESETHCFFGWHKAVLILISFSMLFALLSICFGICAPCHPSFA--IFYTVLVFIAALLSLIGLGIFFFNAHMV 163 (211)
T ss_pred cccCCcccccccceehhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00 0 1237776665 7777777777665544444444333 3444555789999999999994433333
Q ss_pred hhhhhhCCCCCCCcCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q psy11841 151 KAQEICGPTASRYNLGQCDIKWAYILAIIGCLDVIVLAILAFI 193 (238)
Q Consensus 151 ~V~~~CG~~a~~y~lG~C~lGWay~lAiig~~~~~~~a~L~~~ 193 (238)
|-|-. -+..+.|+ =++||||++++.|++..+.+-+.+..
T Consensus 164 d~r~~-~g~~~tYe---q~~G~afYl~~~g~l~~~~a~l~sv~ 202 (211)
T PF07062_consen 164 DNRFV-QGIVGTYE---QHYGYAFYLHLAGSLLLLFAFLFSVF 202 (211)
T ss_pred hhhee-ecccceEE---EeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 33322 23445554 35999999999999877665555543
No 7
>PF06653 Claudin_3: Tight junction protein, Claudin-like; InterPro: IPR009545 This family consists of several Caenorhabditis elegans specific proteins of unknown function.
Probab=98.33 E-value=2.3e-05 Score=65.88 Aligned_cols=141 Identities=13% Similarity=0.200 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHhcCCcccccCCCceeecccccccccccccccccccccccccChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11841 33 TLCFALIVSVAFLTPEWIGIANKGRLGLWSSCEFDVNGFEECTGKFAEFMEISNAAFKISTVLCLVSVTLALVTIAVMLL 112 (238)
Q Consensus 33 sl~aail~~vaf~tP~Wl~~~~~~~fGL~~~C~~~~~~~~~C~g~~~~f~~ip~~~Wkaa~~f~~~g~~llll~il~~ll 112 (238)
-+.+.++..++..||.|+.++.. +. +.|.|- .++++-.+++..++..++-+.+.+.++.++....
T Consensus 12 i~i~~iL~~vgvFTp~W~~~~~~----------~~----~~~~GI-vP~~~~~~~W~~~as~lm~is~~~~~i~i~~~~~ 76 (163)
T PF06653_consen 12 ILIGFILNAVGVFTPCWITDSNY----------KI----SISIGI-VPYSSSEPGWFAAASWLMYISFACFIIMIIFYII 76 (163)
T ss_pred HHHHHHHHHHheECCceEEEeCC----------cc----cceeeE-EeCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677899999999999975432 11 244432 1122212223445555666665555444333332
Q ss_pred HH--------hccCchhhHHHHHHHHHHHHHhhhheEEeeCCCCchhhhhhhCCCCCCCcCCCCCcchHHHHHHHHHHHH
Q psy11841 113 FF--------FMQPTSVYMVAAWLQIISALCMIASVVIYPLGWESAKAQEICGPTASRYNLGQCDIKWAYILAIIGCLDV 184 (238)
Q Consensus 113 ~~--------~c~~~~v~~i~g~lq~~A~l~~~lglvlfP~Gw~s~~V~~~CG~~a~~y~lG~C~lGWay~lAiig~~~~ 184 (238)
.. +++.|+.++...++-++..++..++.++|-.+.++.. +.|+.+.=++|||+.+++++.++.
T Consensus 77 ~~~~v~~~g~~~~~r~~~~~i~~~s~li~il~~iavil~a~~~~~~~---------~~~~~~~~~lGyS~wL~v~sail~ 147 (163)
T PF06653_consen 77 IVYKVRKHGYSCSIRKWFHIISIFSLLIVILTIIAVILFAVNISSFN---------NGYDPFSLSLGYSAWLCVASAILS 147 (163)
T ss_pred HheeEecccccHHHHHHHHHHHHHHHHHHHHHHHHheeEEeeccccc---------cccccccceeehHHHHHHHHHHHH
Confidence 22 1223889999999999999999999999977666331 223333347999999999999999
Q ss_pred HHHHHHHHHHHhh
Q psy11841 185 IVLAILAFILATR 197 (238)
Q Consensus 185 ~~~a~L~~~~a~~ 197 (238)
++...++.-.++|
T Consensus 148 ~~~~~ls~~~a~~ 160 (163)
T PF06653_consen 148 LINFGLSGYIARK 160 (163)
T ss_pred HHHHHHHHHHHhc
Confidence 9999888777655
No 8
>PF06687 SUR7: SUR7/PalI family; InterPro: IPR009571 This family consists of several fungal-specific SUR7 proteins. Its activity regulates expression of RVS161, a homologue of human endophilin, suggesting a function for both in endocytosis [, ]. The protein carries four transmembrane domains and is thus likely to act as an anchoring protein for the eisosome to the plasma membrane. Eisosomes are the immobile protein complexes, that include the proteins Pil1 and Lsp1, which co-localise with sites of protein and lipid endocytosis at the plasma membrane. SUR7 protein may play a role in sporulation []. Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This family also includes PalI which is part of a pH signal transduction cascade. Based on the similarity of PalI to the yeast Rim9 meiotic signal transduction component it has been suggested that PalI might be a membrane sensor for ambient pH [].
Probab=95.84 E-value=0.12 Score=44.04 Aligned_cols=119 Identities=16% Similarity=0.336 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHhcCCc----cccc------C-----------CCceeecccccccc-cccccccccc----ccccc-
Q psy11841 30 GIFTLCFALIVSVAFLTPE----WIGI------A-----------NKGRLGLWSSCEFD-VNGFEECTGK----FAEFM- 82 (238)
Q Consensus 30 ~~lsl~aail~~vaf~tP~----Wl~~------~-----------~~~~fGL~~~C~~~-~~~~~~C~g~----~~~f~- 82 (238)
.++++.+.++.+++.+.+. .+.+ + +.+++|+|.+|..+ ..+.++|... ..+..
T Consensus 6 ~~~~~~a~il~il~~i~~~~~~~~~~~l~~~~~~~s~~~~~~g~~~~y~~gl~g~C~~~~~~~~~~Cs~~~~~y~f~~~~ 85 (212)
T PF06687_consen 6 LLLSLAAFILLILALISGPSNSSVLKSLYFLKLDTSGLGISLGLPDFYRFGLWGYCEGNNGTNITSCSSPSPGYPFDPRE 85 (212)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCcccceEEEEEECCCCCccCCCCCeEEEEEEEEeeeCCCCCCCccCCCCCCCCCCHHH
Confidence 4677777777777776665 6654 1 12789999999983 3333488742 11111
Q ss_pred ------------ccCh----------hhHHHHHHHHHHHHHHHHHHHHHHHH-HHhccCc--hhhHHHHHHHHHHHHHhh
Q psy11841 83 ------------EISN----------AAFKISTVLCLVSVTLALVTIAVMLL-FFFMQPT--SVYMVAAWLQIISALCMI 137 (238)
Q Consensus 83 ------------~ip~----------~~Wkaa~~f~~~g~~llll~il~~ll-~~~c~~~--~v~~i~g~lq~~A~l~~~ 137 (238)
.+|+ ...++..++..+++.+..++.+...+ .++.++| ........+.+++.++..
T Consensus 86 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ia~~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~a~~~~l 165 (212)
T PF06687_consen 86 ILDSELNSLSDLGLPSSLRSALDYYNNLLKAMFILYPIAIVFTFLALILSGLLAFFSRPRNTILSLVASILSLLAFIFLL 165 (212)
T ss_pred HhcccchhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHH
Confidence 1232 14677778888888888777666344 3333433 455666667777777777
Q ss_pred hheEEeeCCCC
Q psy11841 138 ASVVIYPLGWE 148 (238)
Q Consensus 138 lglvlfP~Gw~ 148 (238)
++.++.-.-+.
T Consensus 166 va~~i~t~~~~ 176 (212)
T PF06687_consen 166 VAAIIATALFV 176 (212)
T ss_pred HHHHHHHHHHH
Confidence 77766644443
No 9
>PF07344 Amastin: Amastin surface glycoprotein; InterPro: IPR009944 This family contains the eukaryotic surface glycoprotein amastin (approximately 180 residues long).In Trypanosoma cruzi, amastin is particularly abundant during the amastigote stage.
Probab=90.95 E-value=2 Score=35.61 Aligned_cols=87 Identities=15% Similarity=0.256 Sum_probs=50.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhh----hheEEeeCCCCchhhhhhhCCCCCCC
Q psy11841 88 AFKISTVLCLVSVTLALVTIAVMLLFFFMQPTSVYMVAAWLQIISALCMI----ASVVIYPLGWESAKAQEICGPTASRY 163 (238)
Q Consensus 88 ~Wkaa~~f~~~g~~llll~il~~ll~~~c~~~~v~~i~g~lq~~A~l~~~----lglvlfP~Gw~s~~V~~~CG~~a~~y 163 (238)
-+|+++.|-.+++.+...+.++..+.++|. +....++-.+-+++.++.+ +....| + ++.|+. .
T Consensus 61 ~f~aa~afaIisi~~~~~a~v~g~~~l~~~-~~~r~v~l~L~~~~~~~~~v~wa~~v~~Y----~----~~~C~~----~ 127 (155)
T PF07344_consen 61 RFRAAQAFAIISIFVYGAAFVLGVLLLCCC-SCLRWVCLVLNIVGIVTLLVVWALMVVVY----Y----GGFCGA----L 127 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHH----c----cCCCcC----c
Confidence 599999998888888877766666555442 1222233333333333222 223334 1 567852 3
Q ss_pred cCCCCCcchHHHHHHHHHHHHHHH
Q psy11841 164 NLGQCDIKWAYILAIIGCLDVIVL 187 (238)
Q Consensus 164 ~lG~C~lGWay~lAiig~~~~~~~ 187 (238)
+....+.|=+|+|.+++-.+.++.
T Consensus 128 ~~~~~~yg~GF~L~v~aw~l~~i~ 151 (155)
T PF07344_consen 128 KSRGYKYGAGFALFVAAWCLDIIN 151 (155)
T ss_pred cCCCcccCccHHHHHHHHHHHHHH
Confidence 344557888888888765555443
No 10
>PF15108 TMEM37: Voltage-dependent calcium channel gamma-like subunit protein family
Probab=89.55 E-value=2.1 Score=36.45 Aligned_cols=125 Identities=11% Similarity=0.278 Sum_probs=66.2
Q ss_pred cchhhhhhcccchhHHHHHHHHHHHHHHHHHHHhcCCcccccCCCceeecccccccccccccccccccccccccChhhHH
Q psy11841 11 SQIYATNYVRNSKAVGVLWGIFTLCFALIVSVAFLTPEWIGIANKGRLGLWSSCEFDVNGFEECTGKFAEFMEISNAAFK 90 (238)
Q Consensus 11 ~~~y~~~y~r~s~~vgvlW~~lsl~aail~~vaf~tP~Wl~~~~~~~fGL~~~C~~~~~~~~~C~g~~~~f~~ip~~~Wk 90 (238)
.+.+-+.++|... .+++..+-+++.++..--+|+-.+ +.-||||..|..++....+|.... +....|-.+..
T Consensus 12 ~~~FfEsfiRtLI------ilC~alavVLSSisiCDG~WLla~-~~lFGLWhFCt~~n~s~~~C~rdL-~~a~v~gL~~g 83 (184)
T PF15108_consen 12 HRSFFESFIRTLI------ILCTALAVVLSSISICDGHWLLAE-DRLFGLWHFCTVSNQSSPHCLRDL-SQAHVPGLAVG 83 (184)
T ss_pred CchHHHHHHHHHH------HHHHHHHHHHhhheeecceEEEec-CeeeeeeeeeecCCCCcchhhHHH-HHhcCchHHHH
Confidence 3455556677332 367778888889999999999654 467999999986644334895211 11223432222
Q ss_pred HHHH--HHHHHHHHHHHHHHHHHHHHhc---cCchhhHHHHHHHHHHHHHhhhheEEe
Q psy11841 91 ISTV--LCLVSVTLALVTIAVMLLFFFM---QPTSVYMVAAWLQIISALCMIASVVIY 143 (238)
Q Consensus 91 aa~~--f~~~g~~llll~il~~ll~~~c---~~~~v~~i~g~lq~~A~l~~~lglvlf 143 (238)
.... ...++++..+...=+....=.| ++|+=-..-.++.+++.++-.-|++.|
T Consensus 84 m~l~Rs~~slAVV~AIFGLElLmvSQvcEd~~SrrKWamGs~LlLvsfvlSs~GllsF 141 (184)
T PF15108_consen 84 MGLARSVGSLAVVVAIFGLELLMVSQVCEDAHSRRKWAMGSVLLLVSFVLSSGGLLSF 141 (184)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhhhhhhhhhHHHHHHHHHhcccHHHH
Confidence 2111 1222222222111111111123 223333455666667777766677666
No 11
>PTZ00201 amastin surface glycoprotein; Provisional
Probab=88.46 E-value=6.4 Score=34.27 Aligned_cols=94 Identities=13% Similarity=0.226 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCchhhHHHHHHHHHHHH--HhhhheEEeeCCCCchhhhhhhCCCCCCCc
Q psy11841 88 AFKISTVLCLVSVTLALVTIAVMLLFF-FMQPTSVYMVAAWLQIISAL--CMIASVVIYPLGWESAKAQEICGPTASRYN 164 (238)
Q Consensus 88 ~Wkaa~~f~~~g~~llll~il~~ll~~-~c~~~~v~~i~g~lq~~A~l--~~~lglvlfP~Gw~s~~V~~~CG~~a~~y~ 164 (238)
-+|+++.|-.+++.+...+.++..+.. ||+..+ -+|-.+-+++.. +.+-+++..- +..++- +.|.+..+
T Consensus 73 ~Fr~aqAfaIISI~v~~aA~vlg~~~l~cc~~lr--~vcl~Lnivg~vt~~VvWa~mv~~--Y~~~~~-~~C~~~~~--- 144 (192)
T PTZ00201 73 QFRVAQALAVISILVYGAAFVLGLVLLYGCTIHR--WVCLALNIVGAVTLGVVWAAMVVT--YYKDDG-PLCPRVRD--- 144 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH--HHHHHHHHHHHHHHheeeeeEEEE--EEcCCC-cccccccc---
Confidence 489999997777776666654444433 343322 234444444444 4444565553 322211 15643322
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHH
Q psy11841 165 LGQCDIKWAYILAIIGCLDVIVLAIL 190 (238)
Q Consensus 165 lG~C~lGWay~lAiig~~~~~~~a~L 190 (238)
-+-+.|=+|+|.+.+-.+-++.-++
T Consensus 145 -~~~~yGaGF~Llv~AW~L~iinii~ 169 (192)
T PTZ00201 145 -MGYRFGTGFALLVVAWILDILNIIF 169 (192)
T ss_pred -CCCCccCcHHHHHHHHHHHHHHHHH
Confidence 0235777788877765555444333
No 12
>PHA03048 IMV membrane protein; Provisional
Probab=65.04 E-value=12 Score=28.95 Aligned_cols=35 Identities=20% Similarity=0.541 Sum_probs=26.3
Q ss_pred chhhHHHHHHHHHHHHHhhhheEEeeCCCCchhhhhhhCCC
Q psy11841 119 TSVYMVAAWLQIISALCMIASVVIYPLGWESAKAQEICGPT 159 (238)
Q Consensus 119 ~~v~~i~g~lq~~A~l~~~lglvlfP~Gw~s~~V~~~CG~~ 159 (238)
.+..|....+-|+-|+.+.+|.++| .+|+ +.|.|+
T Consensus 40 ~~~wRalsii~FIlgivl~lG~~if-smy~-----r~C~~~ 74 (93)
T PHA03048 40 VTVWRALSGIAFVLGIVMTIGMLIY-SMWG-----RYCTPS 74 (93)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHH-HHHh-----cccCCC
Confidence 4556777777888888899999999 5565 467765
No 13
>COG1338 FliP Flagellar biosynthesis pathway, component FliP [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=61.94 E-value=27 Score=31.60 Aligned_cols=59 Identities=22% Similarity=0.290 Sum_probs=41.8
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHH-----------HHhhhcccCCCcchhhHHHHHHHHHHHHhcchhH
Q psy11841 169 DIKWAYILAIIGCLDVIVLAILAFI-----------LATRHIKLQPEPLYVALVTIAVMLLFFFMQPTSV 227 (238)
Q Consensus 169 ~lGWay~lAiig~~~~~~~a~L~~~-----------~a~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (238)
+..+.--+.++-+++++.-+++-.. +-|+.--.|..|.+|=|+-+|..++||.|+||-.
T Consensus 41 ~~~~~vq~l~lLTvLslaPsillmmTSFtRiiIvl~llR~aLG~qqtPPnqVligLALFLTffiM~Pt~~ 110 (248)
T COG1338 41 QLVTTVQLLALLTVLSLAPSILLMMTSFTRIIIVFSFLRTALGTQQTPPNQVLIGLALFLTFFIMAPTFD 110 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHhhhHHH
Confidence 4555555555555555544444321 4556777888899999999999999999999854
No 14
>PF07803 GSG-1: GSG1-like protein; InterPro: IPR012478 This family contains sequences bearing similarity to a region of GSG1 (Q9Z1H7 from SWISSPROT), a protein specifically expressed in testicular germ cells []. It is possible that over expression of the human homologue may be involved in tumourigenesis of human testicular germ cell tumours []. The region in question has four highly conserved cysteine residues.
Probab=61.19 E-value=11 Score=30.43 Aligned_cols=26 Identities=23% Similarity=0.249 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccccc
Q psy11841 27 VLWGIFTLCFALIVSVAFLTPEWIGI 52 (238)
Q Consensus 27 vlW~~lsl~aail~~vaf~tP~Wl~~ 52 (238)
.|-+++.+++..+++.||.+.||-+.
T Consensus 9 ~Ls~~ln~LAL~~S~tA~~sSyWC~G 34 (118)
T PF07803_consen 9 LLSLILNLLALAFSTTALLSSYWCEG 34 (118)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccc
Confidence 45568889999999999999999943
No 15
>PRK09617 type III secretion system protein; Reviewed
Probab=56.16 E-value=32 Score=31.05 Aligned_cols=35 Identities=31% Similarity=0.418 Sum_probs=29.4
Q ss_pred HHhhhcccCCCcchhhHHHHHHHHHHHHhcchhHH
Q psy11841 194 LATRHIKLQPEPLYVALVTIAVMLLFFFMQPTSVY 228 (238)
Q Consensus 194 ~a~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (238)
.-|+..-.|+-|.++-+.-+|..+++|.|+|+---
T Consensus 57 llRnALG~QQ~PPN~VL~gLALfLT~FVM~Pv~~~ 91 (243)
T PRK09617 57 LLRNALGVQQTPPSQVLNGIALILSIYIMFPTGVA 91 (243)
T ss_pred HHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567778888999999999999999999998543
No 16
>TIGR01102 yscR type III secretion apparatus protein, YscR/HrcR family. This model identifies the generic virulence translocation proteins in bacteria. It derives its name:'Yop' from Yersinia enterocolitica species, where this virulence protein was identified. In bacterial pathogenesis, Yop effector proteins are translocated into the eukaryotic cells.
Probab=55.47 E-value=32 Score=30.29 Aligned_cols=35 Identities=29% Similarity=0.424 Sum_probs=29.3
Q ss_pred HHhhhcccCCCcchhhHHHHHHHHHHHHhcchhHH
Q psy11841 194 LATRHIKLQPEPLYVALVTIAVMLLFFFMQPTSVY 228 (238)
Q Consensus 194 ~a~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (238)
.-|+..-.|+-|.++-|+-+|..+++|.|+|+---
T Consensus 30 ~lR~ALG~QQ~PPN~vL~gLAL~LT~fVM~Pv~~~ 64 (202)
T TIGR01102 30 ILRNALGVQQVPPNMALYGIALILSMFVMAPVGHQ 64 (202)
T ss_pred HHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778888999999999999999999998543
No 17
>PF14985 TM140: TM140 protein family
Probab=50.04 E-value=1e+02 Score=26.29 Aligned_cols=88 Identities=14% Similarity=0.304 Sum_probs=39.7
Q ss_pred Cceeeccccccccccccc-ccccccccccc--cChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHH
Q psy11841 55 KGRLGLWSSCEFDVNGFE-ECTGKFAEFME--ISNAAFKISTVLCLVSVTLALVTIAVMLLFFFMQPTSVYMVAAWLQII 131 (238)
Q Consensus 55 ~~~fGL~~~C~~~~~~~~-~C~g~~~~f~~--ip~~~Wkaa~~f~~~g~~llll~il~~ll~~~c~~~~v~~i~g~lq~~ 131 (238)
..++|-|+.|.=+++..+ +|. .+-+++. +|-..---+-+=+=.+.++.+..-+-.++..|.++..=-+.+-.+...
T Consensus 40 ~lrIGFyNFCLWne~~~~LqC~-qfpeLealGvp~vgLaLARlgVYgalVltlFvplplLla~cn~~egeW~Lav~fLa~ 118 (181)
T PF14985_consen 40 NLRIGFYNFCLWNEDTGSLQCH-QFPELEALGVPRVGLALARLGVYGALVLTLFVPLPLLLAWCNGDEGEWQLAVGFLAA 118 (181)
T ss_pred cceeeeeeeeeecCCcCccccc-cCchHHHcCCcHHHHHHHHHhhHHHHHHHHHHhHHHHHHHhcCCcchhHHHHHHHHH
Confidence 378999999986654323 885 3223332 222111111111223333333333444444544443223444444444
Q ss_pred HHHHhhhheEEe
Q psy11841 132 SALCMIASVVIY 143 (238)
Q Consensus 132 A~l~~~lglvlf 143 (238)
+++++.-|+-+|
T Consensus 119 ss~lLa~GLgLF 130 (181)
T PF14985_consen 119 SSVLLASGLGLF 130 (181)
T ss_pred HHHHHHhhhHHH
Confidence 445554444444
No 18
>PRK05699 fliP flagellar biosynthesis protein FliP; Reviewed
Probab=48.85 E-value=48 Score=30.00 Aligned_cols=34 Identities=29% Similarity=0.465 Sum_probs=28.7
Q ss_pred HHhhhcccCCCcchhhHHHHHHHHHHHHhcchhH
Q psy11841 194 LATRHIKLQPEPLYVALVTIAVMLLFFFMQPTSV 227 (238)
Q Consensus 194 ~a~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (238)
.-|+..-.|+-|.++-+.-+|..+++|.|+|+--
T Consensus 74 ~lR~ALG~Qq~PPN~vl~gLAL~LT~fVM~Pv~~ 107 (245)
T PRK05699 74 LLRQALGTQQTPPNQVLIGLALFLTFFIMSPVFD 107 (245)
T ss_pred HHHHhhCcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777888899999999999999999999753
No 19
>PRK14485 putative bifunctional cbb3-type cytochrome c oxidase subunit I/II; Provisional
Probab=48.08 E-value=3.5e+02 Score=28.29 Aligned_cols=40 Identities=23% Similarity=0.442 Sum_probs=34.4
Q ss_pred chhhhhhcccchhHHHHHHHHHHHHHHHHHHHhcCCcccc
Q psy11841 12 QIYATNYVRNSKAVGVLWGIFTLCFALIVSVAFLTPEWIG 51 (238)
Q Consensus 12 ~~y~~~y~r~s~~vgvlW~~lsl~aail~~vaf~tP~Wl~ 51 (238)
..|+.+-+|.....+++|.++..+..++...-+..|+++-
T Consensus 6 ~~y~~~~v~~f~~a~vlw~~vg~l~Gl~~a~~l~~Pd~~~ 45 (712)
T PRK14485 6 FYYDNKIVRKFLIATIIWGIVGMLVGLLVALQLVFPNLNF 45 (712)
T ss_pred eeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence 4567777888888899999999999999999999999863
No 20
>PRK12783 fliP flagellar biosynthesis protein FliP; Reviewed
Probab=47.10 E-value=49 Score=30.13 Aligned_cols=34 Identities=29% Similarity=0.510 Sum_probs=28.5
Q ss_pred HHhhhcccCCCcchhhHHHHHHHHHHHHhcchhH
Q psy11841 194 LATRHIKLQPEPLYVALVTIAVMLLFFFMQPTSV 227 (238)
Q Consensus 194 ~a~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (238)
.-|...-.|+-|.++-|+-+|..+++|.|+|+--
T Consensus 82 ~lR~ALG~QQ~PPN~VL~gLALfLT~FVM~PV~~ 115 (255)
T PRK12783 82 FLRSGLGLQSTPANLFLVSLALFMTFYVMAPTFD 115 (255)
T ss_pred HHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677888889999999999999999999854
No 21
>TIGR01103 fliP flagellar biosynthetic protein FliP. This model describes bacterial flagellar biogenesis protein fliP, which is one of the genes in motility locus on the bacterial chromosome that is involved in structure and function of bacterial flagellum. It was demonstrated that mutants in fliP locus were non-flagellated and non-motile, while revertants were flagellated and motile.
Probab=46.73 E-value=50 Score=28.96 Aligned_cols=33 Identities=33% Similarity=0.480 Sum_probs=28.3
Q ss_pred HhhhcccCCCcchhhHHHHHHHHHHHHhcchhH
Q psy11841 195 ATRHIKLQPEPLYVALVTIAVMLLFFFMQPTSV 227 (238)
Q Consensus 195 a~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (238)
-|+..-.|+-|.++-++-+|..+++|.|+|+--
T Consensus 28 lR~AlG~Qq~PPn~vl~glAL~LT~fvM~Pv~~ 60 (197)
T TIGR01103 28 LRSALGLQSTPPNQVLLGLALFLTFFVMAPTFD 60 (197)
T ss_pred HHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888899999999999999999999754
No 22
>PRK12796 spaP type III secretion system protein SpaP; Provisional
Probab=45.77 E-value=50 Score=29.47 Aligned_cols=34 Identities=29% Similarity=0.439 Sum_probs=28.4
Q ss_pred HHhhhcccCCCcchhhHHHHHHHHHHHHhcchhH
Q psy11841 194 LATRHIKLQPEPLYVALVTIAVMLLFFFMQPTSV 227 (238)
Q Consensus 194 ~a~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (238)
+-|+.--+|+-|.++-++-+|..+++|.|+|+--
T Consensus 36 llR~ALG~qq~PPNqVl~gLALfLT~fiM~Pv~~ 69 (221)
T PRK12796 36 MVRNALGLQQVPSNMTLNGIALLLSMFVMMPVIQ 69 (221)
T ss_pred HHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677888888999999999999999999754
No 23
>PF00813 FliP: FliP family; InterPro: IPR005838 Secretion of virulence factors in Gram-negative bacteria involves transportation of the protein across two membranes to reach the cell exterior []. There have been four secretion systems described in animal enteropathogens such as Salmonella and Yersinia, with further sequence similarities in plant pathogens like Ralstonia and Erwinia. The type III secretion system is of great interest as it is used to transport virulence factors from the pathogen directly into the host cell [] and is only triggered when the bacterium comes into close contact with the host. The protein subunits of the system are very similar to those of bacterial flagellar biosynthesis []. However, while the latter forms a ring structure to allow secretion of flagellin and is an integral part of the flagellum itself [], type III subunits in the outer membrane translocate secreted proteins through a channel-like structure. It is believed that the family of type III inner membrane proteins are used as structural moieties in a complex with several other subunits [], including the ATPase necessary for driving the secretion system. One such set of inner membrane proteins, termed "P" here for nomenclature purposes, includes the Salmonella and Shigella SpaP, the Yersinia YscR, the Erwinia HrcR, and the Xanthamonas Pro2 genes [], as well as several FliP flagellar biosynthesis genes []. FliP is an ~30Kd protein containing three or four transmembrane (TM) regions.; GO: 0009306 protein secretion, 0016020 membrane
Probab=44.60 E-value=55 Score=28.66 Aligned_cols=34 Identities=29% Similarity=0.415 Sum_probs=28.9
Q ss_pred HHhhhcccCCCcchhhHHHHHHHHHHHHhcchhH
Q psy11841 194 LATRHIKLQPEPLYVALVTIAVMLLFFFMQPTSV 227 (238)
Q Consensus 194 ~a~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (238)
+-|+..-+|+-|.++-+.-+|..+++|.|+|+--
T Consensus 27 llR~AlG~Qq~PPn~vl~glAL~LT~fvM~Pv~~ 60 (194)
T PF00813_consen 27 LLRNALGLQQTPPNQVLNGLALFLTLFVMAPVIQ 60 (194)
T ss_pred HHhcccccCcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777888899999999999999999999753
No 24
>PRK12430 putative bifunctional flagellar biosynthesis protein FliO/FliP; Provisional
Probab=44.31 E-value=52 Score=31.59 Aligned_cols=34 Identities=29% Similarity=0.400 Sum_probs=28.6
Q ss_pred HHhhhcccCCCcchhhHHHHHHHHHHHHhcchhH
Q psy11841 194 LATRHIKLQPEPLYVALVTIAVMLLFFFMQPTSV 227 (238)
Q Consensus 194 ~a~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (238)
+-|...-.|+-|.++-|+-+|.++++|.|+|+--
T Consensus 207 llR~ALG~QQ~PPN~VL~gLALfLT~FVM~PV~~ 240 (379)
T PRK12430 207 LLRNALGTPYAPPNQILLGLALFLTFFIMSPTFD 240 (379)
T ss_pred HHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677888899999999999999999999754
No 25
>PF10204 DuoxA: Dual oxidase maturation factor; InterPro: IPR018469 DuoxA (Dual oxidase maturation factor) is the essential protein necessary for the final release of DUOX2 (an NADPH:O2 oxidoreductase flavoprotein) from the endoplasmic reticulum. Dual oxidases (DUOX1 and DUOX2) constitute the catalytic core of the hydrogen peroxide generator, which generates H2O2 at the apical membrane of thyroid follicular cells, essential for iodination of thyroglobulin by thyroid peroxidases. DuoxA carries five membrane-integral regions including a reverse signal-anchor with external N terminus (type III) and two N-glycosylation sites []. It is conserved from nematodes to humans.; GO: 0015031 protein transport, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane
Probab=41.83 E-value=49 Score=30.55 Aligned_cols=64 Identities=16% Similarity=0.390 Sum_probs=38.9
Q ss_pred hhHHHHHHHHHHHHHhhhheEEeeCCCCchhhhhhhCCCCCCCcCC----CCCcchHHHHHHHHHHHHHHHHHHHHH
Q psy11841 121 VYMVAAWLQIISALCMIASVVIYPLGWESAKAQEICGPTASRYNLG----QCDIKWAYILAIIGCLDVIVLAILAFI 193 (238)
Q Consensus 121 v~~i~g~lq~~A~l~~~lglvlfP~Gw~s~~V~~~CG~~a~~y~lG----~C~lGWay~lAiig~~~~~~~a~L~~~ 193 (238)
+.++-+.+..+.|.+++++++.|..=-..+ .| +.+.| +-+.||+|.+.....+++++++..-..
T Consensus 194 v~~Yg~~~l~~TG~~~l~a~~~~~~~~~~~----~~-----~i~~~~~~l~~~~G~~Fwl~LatGiLc~l~G~~i~~ 261 (281)
T PF10204_consen 194 VPRYGAYMLLLTGAFMLFANLIYSTVRPTP----PC-----PIRFGGSVLHFHYGWCFWLTLATGILCLLLGLIIVF 261 (281)
T ss_pred HHHhhHHHHHHhhHHHHHHHHHHHHhcCCC----CC-----eeeeCCceeeeccccHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666677788888888773311111 11 22222 235999999988777777766655444
No 26
>PF06197 DUF998: Protein of unknown function (DUF998); InterPro: IPR009339 This is a family of proteins with no known function.
Probab=41.58 E-value=1.9e+02 Score=23.45 Aligned_cols=59 Identities=15% Similarity=0.156 Sum_probs=35.5
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhhhheEEeeCCCC
Q psy11841 85 SNAAFKISTVLCLVSVTLALVTIAVMLLFFFMQPTSVYMVAAWLQIISALCMIASVVIYPLGWE 148 (238)
Q Consensus 85 p~~~Wkaa~~f~~~g~~llll~il~~ll~~~c~~~~v~~i~g~lq~~A~l~~~lglvlfP~Gw~ 148 (238)
+|..|..-..++..|+..+..++.+.- . +++...+...++...+++. .++.-+||.+-+
T Consensus 36 ~p~~~~~~~~~~~~g~~~~~~a~~l~~---~-~~~~~~~~~~~ll~~~g~~-~i~~g~fp~~~~ 94 (184)
T PF06197_consen 36 SPYAWLFNIGFILSGVLFLAFAVGLFR---A-RRRRLSRWGAVLLALAGLG-LILVGLFPMDPP 94 (184)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHH---h-cccchHHHHHHHHHHHHHH-HHHhhcCCCCCc
Confidence 444577666666666665554322211 1 4456667777777777777 455668987655
No 27
>PRK12797 type III secretion system protein YscR; Provisional
Probab=39.61 E-value=1.2e+02 Score=26.90 Aligned_cols=40 Identities=25% Similarity=0.404 Sum_probs=31.5
Q ss_pred HHhhhcccCCCcchhhHHHHHHHHHHHHhcchhHHHHHHH
Q psy11841 194 LATRHIKLQPEPLYVALVTIAVMLLFFFMQPTSVYMVAAW 233 (238)
Q Consensus 194 ~a~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (238)
.-|+..-.|+-|.++-+.-+|..+++|.|+|+---+-.++
T Consensus 39 ~lRnAlG~QQ~PPN~Vl~gLAL~LT~fvM~Pv~~~i~~~~ 78 (213)
T PRK12797 39 LLRNALGVQQVPPNMALYGLALILTLFVMAPVGLAIQDRL 78 (213)
T ss_pred HHHhccCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777888899999999999999999999865543333
No 28
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=35.74 E-value=97 Score=27.18 Aligned_cols=48 Identities=10% Similarity=0.197 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HhccCchhhHHHHHHHHHHHHHhhhheEEe
Q psy11841 92 STVLCLVSVTLALVTIAVMLLF--FFMQPTSVYMVAAWLQIISALCMIASVVIY 143 (238)
Q Consensus 92 a~~f~~~g~~llll~il~~ll~--~~c~~~~v~~i~g~lq~~A~l~~~lglvlf 143 (238)
+.+|+.+|.++.+++.+..+=+ ++.| .+.++-...++..++++|.++|
T Consensus 9 ~~vLLliG~~f~ligaIGLlRfPD~YtR----LHAATKa~TLGv~LILlgv~l~ 58 (197)
T PRK12585 9 ISIMILIGGLLSILAAIGVIRLPDVYTR----THAAGISNTFGVSLLLFATVGY 58 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcHHHH----hhccccchhhhHHHHHHHHHHH
Confidence 3455666666655544333211 1111 2334444555666666776654
No 29
>PF13828 DUF4190: Domain of unknown function (DUF4190)
Probab=30.89 E-value=1.9e+02 Score=20.41 Aligned_cols=45 Identities=24% Similarity=0.340 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH---HHhhhcccCCCcchhhHHHHHHHH
Q psy11841 172 WAYILAIIGCLDVIVLAILAFI---LATRHIKLQPEPLYVALVTIAVML 217 (238)
Q Consensus 172 Way~lAiig~~~~~~~a~L~~~---~a~~~~k~~~~~~~~~~~~~~~~~ 217 (238)
+|..++++|.+..++.+..+.+ .+.||.|..+ +-...+-++..++
T Consensus 4 aslvlgi~~~~~~~~~~i~aiilG~ial~~i~r~~-~~G~g~A~aGivl 51 (62)
T PF13828_consen 4 ASLVLGILGLFLCGLLGIVAIILGHIALRQIRRSG-QRGRGMAIAGIVL 51 (62)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccC-CCChHHHHHHHHH
Confidence 3566677665554556666665 4555555555 3444455555444
No 30
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=30.68 E-value=2.2e+02 Score=29.75 Aligned_cols=30 Identities=17% Similarity=0.424 Sum_probs=14.2
Q ss_pred chhhhhhcccchhHHHHHHHHHHHHHHHHHHHhcCC
Q psy11841 12 QIYATNYVRNSKAVGVLWGIFTLCFALIVSVAFLTP 47 (238)
Q Consensus 12 ~~y~~~y~r~s~~vgvlW~~lsl~aail~~vaf~tP 47 (238)
..|.++--++.+.++. +..+.-.++. +++|
T Consensus 28 ~~y~~~~~~~~~~~~~---l~~~~~~fl~---~vq~ 57 (806)
T PF05478_consen 28 PNYETETTYNPGGMGP---LYNMVHSFLD---VVQP 57 (806)
T ss_pred CCCCCCCCCCCcchHH---HHHHHHHHHH---HhCC
Confidence 3444444455555544 4444444333 4444
No 31
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=29.56 E-value=84 Score=24.20 Aligned_cols=29 Identities=7% Similarity=0.171 Sum_probs=22.0
Q ss_pred chhhHHHHHHHHHHHHHhhhheEEeeCCCC
Q psy11841 119 TSVYMVAAWLQIISALCMIASVVIYPLGWE 148 (238)
Q Consensus 119 ~~v~~i~g~lq~~A~l~~~lglvlfP~Gw~ 148 (238)
.+..|....+-|+-|+.+.+|+++| .+|+
T Consensus 42 ~~~wRalSii~FIlG~vl~lGilif-s~y~ 70 (91)
T PHA02680 42 DYVWRALSVTCFIVGAVLLLGLFVF-SMYR 70 (91)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHH-HHhc
Confidence 3566777777888888888998888 5565
No 32
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=27.75 E-value=77 Score=25.23 Aligned_cols=12 Identities=25% Similarity=0.667 Sum_probs=6.3
Q ss_pred chHHHHHHHHHH
Q psy11841 171 KWAYILAIIGCL 182 (238)
Q Consensus 171 GWay~lAiig~~ 182 (238)
+|+..+.++..+
T Consensus 1 RW~l~~iii~~i 12 (130)
T PF12273_consen 1 RWVLFAIIIVAI 12 (130)
T ss_pred CeeeHHHHHHHH
Confidence 577555554333
No 33
>KOG4016|consensus
Probab=25.85 E-value=2e+02 Score=25.80 Aligned_cols=49 Identities=22% Similarity=0.501 Sum_probs=29.9
Q ss_pred hccCchhhHHHHHHHHHHHHHhhhheEEeeCCCCc--hhhhhhhCCCCCCCcCC--CCCcchH
Q psy11841 115 FMQPTSVYMVAAWLQIISALCMIASVVIYPLGWES--AKAQEICGPTASRYNLG--QCDIKWA 173 (238)
Q Consensus 115 ~c~~~~v~~i~g~lq~~A~l~~~lglvlfP~Gw~s--~~V~~~CG~~a~~y~lG--~C~lGWa 173 (238)
..+.++++|+..|+=. +.+.|++ .--||.+ ++.++.|- |+.. .|+.|-+
T Consensus 21 ~rkP~ti~R~~~~lFs----liVf~si-~~eGy~n~~~~~~~~Ci-----ynrn~~ACsyg~a 73 (233)
T KOG4016|consen 21 LRKPQTILRVVSWLFS----LIVFGSI-VNEGYLNSASSGEEFCI-----YNRNSNACSYGVA 73 (233)
T ss_pred hcCchhHHHHHHHHHH----Hhheeee-ccccccCcccCCceEEE-----ECCCCcchhHHHH
Confidence 3456788888777631 2233333 3469987 77888884 4443 5776654
No 34
>PHA02898 virion envelope protein; Provisional
Probab=23.75 E-value=1.5e+02 Score=22.88 Aligned_cols=34 Identities=21% Similarity=0.505 Sum_probs=25.1
Q ss_pred chhhHHHHHHHHHHHHHhhhheEEeeCCCCchhhhhhhCC
Q psy11841 119 TSVYMVAAWLQIISALCMIASVVIYPLGWESAKAQEICGP 158 (238)
Q Consensus 119 ~~v~~i~g~lq~~A~l~~~lglvlfP~Gw~s~~V~~~CG~ 158 (238)
.+..|....+-|+-|+.+.+|.++| .+|+ +.|+|
T Consensus 41 ~~~wRalSii~FIlgivl~lG~~if-s~y~-----r~C~~ 74 (92)
T PHA02898 41 DSALRSISIISFILAIILILGIIFF-KGYN-----MFCGG 74 (92)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH-HHHh-----hhcCC
Confidence 3556777777788888889999999 4454 56776
No 35
>PF02060 ISK_Channel: Slow voltage-gated potassium channel; InterPro: IPR000369 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Two types of beta subunit (KCNE and KCNAB) are presently known to associate with voltage-gated alpha subunits (Kv, KCNQ and eag-like). However, not all combinations of alpha and beta subunits are possible. The KCNE family of K+ channel subunits are membrane glycoproteins that possess a single transmembrane (TM) domain. They share no structural relationship with the alpha subunit proteins, which possess pore forming domains. The subunits appear to have a regulatory function, modulating the kinetics and voltage dependence of the alpha subunits of voltage-dependent K+ channels. KCNE subunits are formed from short polypeptides of ~130 amino acids, and are divided into five subfamilies: KCNE1 (MinK/IsK), KCNE2 (MiRP1), KCNE3 (MiRP2), KCNE4 (MiRP3) and KCNE1L (AMMECR2). ; GO: 0005249 voltage-gated potassium channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2K21_A.
Probab=23.32 E-value=2.1e+02 Score=23.50 Aligned_cols=35 Identities=17% Similarity=0.387 Sum_probs=21.4
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHH-HHHhhhccc
Q psy11841 167 QCDIKWAYILAIIGCLDVIVLAILAF-ILATRHIKL 201 (238)
Q Consensus 167 ~C~lGWay~lAiig~~~~~~~a~L~~-~~a~~~~k~ 201 (238)
+-+...-|+|-++|.+.-++.+++.- +.++|..+.
T Consensus 39 ~~~~~~lYIL~vmgfFgff~~gImlsyvRSKK~E~s 74 (129)
T PF02060_consen 39 DDDNEYLYILVVMGFFGFFTVGIMLSYVRSKKREHS 74 (129)
T ss_dssp T-SSTT-HHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred CCCceeehHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 34566789999999988888887644 444444443
No 36
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=22.79 E-value=15 Score=29.61 Aligned_cols=30 Identities=10% Similarity=0.280 Sum_probs=2.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCchhhHHH
Q psy11841 96 CLVSVTLALVTIAVMLLFFFMQPTSVYMVA 125 (238)
Q Consensus 96 ~~~g~~llll~il~~ll~~~c~~~~v~~i~ 125 (238)
.|+|++.+++++++++-.++|++|+-+|..
T Consensus 27 aGIGiL~VILgiLLliGCWYckRRSGYk~L 56 (118)
T PF14991_consen 27 AGIGILIVILGILLLIGCWYCKRRSGYKTL 56 (118)
T ss_dssp -SSS--------------------------
T ss_pred ccceeHHHHHHHHHHHhheeeeecchhhhh
Confidence 477777777766555544678878877755
No 37
>PF15201 Rod_cone_degen: Progressive rod-cone degeneration
Probab=21.97 E-value=1e+02 Score=21.21 Aligned_cols=26 Identities=35% Similarity=0.546 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHhh-hcccCCCcchhh
Q psy11841 184 VIVLAILAFILATR-HIKLQPEPLYVA 209 (238)
Q Consensus 184 ~~~~a~L~~~~a~~-~~k~~~~~~~~~ 209 (238)
.|+++.|+..-.+| ..++|||+...|
T Consensus 5 lfllstlamlwrrrfanrvqpeps~vd 31 (54)
T PF15201_consen 5 LFLLSTLAMLWRRRFANRVQPEPSGVD 31 (54)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCCCC
Confidence 35566666653333 788999987665
No 38
>COG3162 Predicted membrane protein [Function unknown]
Probab=21.36 E-value=78 Score=24.93 Aligned_cols=36 Identities=14% Similarity=0.062 Sum_probs=29.7
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHh-hhcccCCC
Q psy11841 169 DIKWAYILAIIGCLDVIVLAILAFILAT-RHIKLQPE 204 (238)
Q Consensus 169 ~lGWay~lAiig~~~~~~~a~L~~~~a~-~~~k~~~~ 204 (238)
++.|++.++++-.+.+++.+......+| .-||++.|
T Consensus 59 ~Vt~Gip~gvg~fv~tfVlt~IYv~rAn~~fDrl~~~ 95 (102)
T COG3162 59 SVTRGIPFGVGVFVMTFVLTGIYVRRANGEFDRLNAE 95 (102)
T ss_pred ceehhHhHHHHHHHHHHHHHHHHhhHhhccchHHHHH
Confidence 7999999999999999999999888888 45555544
No 39
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=20.34 E-value=97 Score=25.08 Aligned_cols=11 Identities=18% Similarity=0.021 Sum_probs=2.6
Q ss_pred HhhhcccCCCc
Q psy11841 195 ATRHIKLQPEP 205 (238)
Q Consensus 195 a~~~~k~~~~~ 205 (238)
-+|++|+++.+
T Consensus 88 irR~~Kk~~~~ 98 (122)
T PF01102_consen 88 IRRLRKKSSSD 98 (122)
T ss_dssp HHHHS------
T ss_pred HHHHhccCCCC
Confidence 34555555443
No 40
>PF11893 DUF3413: Domain of unknown function (DUF3413); InterPro: IPR024588 This entry represents an uncharacterised domain found in the N-terminal of predicted HI0842 type membrane sulphatases.
Probab=20.14 E-value=6.3e+02 Score=22.59 Aligned_cols=101 Identities=16% Similarity=0.235 Sum_probs=48.9
Q ss_pred hccCchhhHHHHHHHHHHHHHhh-hheEEeeC-CCC-chhhhhhhCCCCCCCcCCCCC--cchHHHHHHHHHHHHHHHHH
Q psy11841 115 FMQPTSVYMVAAWLQIISALCMI-ASVVIYPL-GWE-SAKAQEICGPTASRYNLGQCD--IKWAYILAIIGCLDVIVLAI 189 (238)
Q Consensus 115 ~c~~~~v~~i~g~lq~~A~l~~~-lglvlfP~-Gw~-s~~V~~~CG~~a~~y~lG~C~--lGWay~lAiig~~~~~~~a~ 189 (238)
+.+++++.+..+++....+++++ +=..+|-. |++ |+.|-+.= +++|+-+ ..|.+...++..+ ..+-..
T Consensus 79 l~~~~r~~r~~a~i~atl~l~lL~~D~~Vy~~Y~fHlN~~v~~l~------~~~~~~~~~~~w~~~~~~~~~i-l~~~~~ 151 (253)
T PF11893_consen 79 LLPYRRLLRGLAAILATLGLILLLIDTQVYQQYRFHLNGFVWELL------FSPGGSEISSSWLLLFIVVPII-LLLELL 151 (253)
T ss_pred HcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHH------HCCccchHHHHHHHHHHHHHHH-HHHHHH
Confidence 34556777776666554443333 33455544 665 55554432 2233322 4577655544332 222224
Q ss_pred HHHHHHhhhcccCCCcchhhHHHHHHHHHHHHhc
Q psy11841 190 LAFILATRHIKLQPEPLYVALVTIAVMLLFFFMQ 223 (238)
Q Consensus 190 L~~~~a~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 223 (238)
++...++|.+++++.... ..+....++.|..-+
T Consensus 152 ~a~~~w~kl~~~~~~~~~-~~~~~~~~~~fl~sh 184 (253)
T PF11893_consen 152 LANWLWKKLRKLQRRKLG-RPVAALFFLCFLASH 184 (253)
T ss_pred HHHHHHHHhhhhhHHHHH-HHHHHHHHHHHHHHH
Confidence 444566676666665432 233344444444443
Done!