Query psy11841
Match_columns 238
No_of_seqs 121 out of 250
Neff 5.8
Searched_HMMs 29240
Date Fri Aug 16 20:19:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11841.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11841hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wqb_A Aptotoxin VII; spider'S 18.4 35 0.0012 20.0 0.6 17 148-168 3-19 (32)
2 2jwa_A Receptor tyrosine-prote 16.4 2.2E+02 0.0076 18.1 4.6 22 172-193 12-33 (44)
3 2k21_A Potassium voltage-gated 16.1 1.9E+02 0.0064 22.8 4.5 39 167-206 48-87 (138)
4 2l8s_A Integrin alpha-1; trans 14.8 2.5E+02 0.0086 18.6 4.3 18 172-189 10-27 (54)
5 1q8d_A GDNF family receptor al 14.5 26 0.00089 26.8 -0.8 42 41-83 55-96 (108)
6 1wrg_A LH-1, light-harvesting 14.4 1.2E+02 0.0042 20.2 2.6 39 8-53 13-51 (55)
7 1lgh_A LH II, B800/850, light 10.5 2E+02 0.007 19.2 2.8 34 18-51 12-47 (56)
8 2knc_A Integrin alpha-IIB; tra 9.3 3.8E+02 0.013 17.7 3.8 17 172-188 13-29 (54)
9 3sjd_D Golgi to ER traffic pro 8.7 61 0.0021 20.9 -0.4 17 1-17 10-26 (46)
10 2knc_B Integrin beta-3; transm 6.2 2.9E+02 0.01 19.4 2.2 38 172-209 11-50 (79)
No 1
>1wqb_A Aptotoxin VII; spider'S venom, cystein framework, cystine knot motif; NMR {Synthetic}
Probab=18.43 E-value=35 Score=19.98 Aligned_cols=17 Identities=35% Similarity=0.907 Sum_probs=11.5
Q ss_pred CchhhhhhhCCCCCCCcCCCC
Q psy11841 148 ESAKAQEICGPTASRYNLGQC 168 (238)
Q Consensus 148 ~s~~V~~~CG~~a~~y~lG~C 168 (238)
+-.+|++.||| |+.+-|
T Consensus 3 gcarvkeacgp----wewpcc 19 (32)
T 1wqb_A 3 GCARVKEACGP----WEWPCC 19 (32)
T ss_dssp CCBCTTSBCCS----SSSCBC
T ss_pred chHHhhhccCC----ccCccc
Confidence 34689999987 554444
No 2
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=16.42 E-value=2.2e+02 Score=18.06 Aligned_cols=22 Identities=36% Similarity=0.436 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q psy11841 172 WAYILAIIGCLDVIVLAILAFI 193 (238)
Q Consensus 172 Way~lAiig~~~~~~~a~L~~~ 193 (238)
-+-..+++|.++.++.+...++
T Consensus 12 ~~Ia~~vVGvll~vi~~l~~~~ 33 (44)
T 2jwa_A 12 TSIISAVVGILLVVVLGVVFGI 33 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHh
Confidence 3456777786655555554444
No 3
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=16.12 E-value=1.9e+02 Score=22.78 Aligned_cols=39 Identities=18% Similarity=0.426 Sum_probs=26.1
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHH-HHHhhhcccCCCcc
Q psy11841 167 QCDIKWAYILAIIGCLDVIVLAILAF-ILATRHIKLQPEPL 206 (238)
Q Consensus 167 ~C~lGWay~lAiig~~~~~~~a~L~~-~~a~~~~k~~~~~~ 206 (238)
+...-.-|+|-++|....|+.+++.- +.++|. ....+||
T Consensus 48 ~~~~~ylYIL~vmgffgff~~GImLsYiRSKk~-E~s~DPy 87 (138)
T 2k21_A 48 DGKLEALYVLMVLGFFGFFTLGIMLSYIRSKKL-EHSNDPF 87 (138)
T ss_dssp TCSSTTCHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCTT
T ss_pred CCCceeehHHHHHHHHHHHHHHHHHHHhHhhhc-cccCCcH
Confidence 44566789999999988888876544 455555 3444443
No 4
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=14.79 E-value=2.5e+02 Score=18.61 Aligned_cols=18 Identities=28% Similarity=0.615 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHHHHHHH
Q psy11841 172 WAYILAIIGCLDVIVLAI 189 (238)
Q Consensus 172 Way~lAiig~~~~~~~a~ 189 (238)
|-++++++|.++.+.+-+
T Consensus 10 WiIi~svl~GLLLL~Lii 27 (54)
T 2l8s_A 10 WVILLSAFAGLLLLMLLI 27 (54)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 677788777665544333
No 5
>1q8d_A GDNF family receptor alpha 1; all-alpha, Cys-rich, hormone/growth factor receptor complex; 1.80A {Rattus norvegicus} SCOP: a.228.1.1
Probab=14.52 E-value=26 Score=26.78 Aligned_cols=42 Identities=19% Similarity=0.447 Sum_probs=26.0
Q ss_pred HHHhcCCcccccCCCceeecccccccccccccccccccccccc
Q psy11841 41 SVAFLTPEWIGIANKGRLGLWSSCEFDVNGFEECTGKFAEFME 83 (238)
Q Consensus 41 ~vaf~tP~Wl~~~~~~~fGL~~~C~~~~~~~~~C~g~~~~f~~ 83 (238)
+-.-+||..+.+. ..+++.|=.|..+.+++|+|......|++
T Consensus 55 iGt~mTPNYvdn~-s~sVspWC~C~~SGN~~eeCe~fl~~Ft~ 96 (108)
T 1q8d_A 55 IGTVMTPNYVDSS-SLSVAPWCDCSNSGNDLEDCLKFLNFFKD 96 (108)
T ss_dssp TTSTTCCC---------CCCSCBCTTCGGGHHHHHHHHHHHHS
T ss_pred cccccCcccccCC-CceeeCCcccCCCCCCHHHHHHHHHHHcc
Confidence 5567899999765 38899999999987666799755555554
No 6
>1wrg_A LH-1, light-harvesting protein B-880, beta chain; membrane protein, pigment binding, photosynthesis; NMR {Rhodospirillum rubrum}
Probab=14.45 E-value=1.2e+02 Score=20.24 Aligned_cols=39 Identities=8% Similarity=0.115 Sum_probs=30.2
Q ss_pred ccccchhhhhhcccchhHHHHHHHHHHHHHHHHHHHhcCCcccccC
Q psy11841 8 VETSQIYATNYVRNSKAVGVLWGIFTLCFALIVSVAFLTPEWIGIA 53 (238)
Q Consensus 8 ~~~~~~y~~~y~r~s~~vgvlW~~lsl~aail~~vaf~tP~Wl~~~ 53 (238)
.|.+|-+|..|+...+. +..++.+.-+++..---|+..+
T Consensus 13 ~~EAqEfH~~f~~~~~~-------F~~iAvvAH~L~~~wrPWl~g~ 51 (55)
T 1wrg_A 13 EGEAKEFHKIFTSSILV-------FFGVAAFAHLLVWIWRPWVPGP 51 (55)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHSSCSSSSCCS
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhcccCCCc
Confidence 46788899999885433 6777888888999988899554
No 7
>1lgh_A LH II, B800/850, light harvesting complex II; bacteriochlorophyll, dexter energy transfer, foerster exciton transfer mechanism; HET: BCL LYC DET HTO; 2.40A {Phaeospirillum molischianum} SCOP: f.3.1.1
Probab=10.50 E-value=2e+02 Score=19.22 Aligned_cols=34 Identities=21% Similarity=0.455 Sum_probs=29.3
Q ss_pred hcccchhHHHHHHHHHHHHHHHHHHHhcCCc--ccc
Q psy11841 18 YVRNSKAVGVLWGIFTLCFALIVSVAFLTPE--WIG 51 (238)
Q Consensus 18 y~r~s~~vgvlW~~lsl~aail~~vaf~tP~--Wl~ 51 (238)
.+.++|.+=.++..+.+.+.++-.+.+.+|. |+.
T Consensus 12 vvdP~~~L~~l~~~v~vlAllIH~~lLs~~~fnWl~ 47 (56)
T 1lgh_A 12 VINPSTWLPVIWIVATVVAIAVHAAVLAAPGFNWIA 47 (56)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCHHH
T ss_pred EECCceeHHHHHHHHHHHHHHHHHHHHcCCCcchhc
Confidence 3777888888999999999999999999988 774
No 8
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=9.30 E-value=3.8e+02 Score=17.68 Aligned_cols=17 Identities=18% Similarity=0.614 Sum_probs=10.5
Q ss_pred hHHHHHHHHHHHHHHHH
Q psy11841 172 WAYILAIIGCLDVIVLA 188 (238)
Q Consensus 172 Way~lAiig~~~~~~~a 188 (238)
|-+.++++|.++.+.+-
T Consensus 13 wiIi~svl~GLllL~li 29 (54)
T 2knc_A 13 WWVLVGVLGGLLLLTIL 29 (54)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66777777665554433
No 9
>3sjd_D Golgi to ER traffic protein 2; ATPase, receptor complex, TA-protein biogenesis, GET pathway hydrolase-transport protein complex; HET: ADP; 4.60A {Saccharomyces cerevisiae}
Probab=8.67 E-value=61 Score=20.91 Aligned_cols=17 Identities=24% Similarity=0.409 Sum_probs=9.3
Q ss_pred CCCCCccccccchhhhh
Q psy11841 1 MGSKVEYVETSQIYATN 17 (238)
Q Consensus 1 ~~~~~~~~~~~~~y~~~ 17 (238)
|||.++..|..++-...
T Consensus 10 ~~~~lsa~EkaRLrRER 26 (46)
T 3sjd_D 10 MGSELTEAEKRRLLRER 26 (46)
T ss_dssp -----CHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHH
Confidence 89999999988876554
No 10
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=6.20 E-value=2.9e+02 Score=19.37 Aligned_cols=38 Identities=24% Similarity=0.253 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH--HHhhhcccCCCcchhh
Q psy11841 172 WAYILAIIGCLDVIVLAILAFI--LATRHIKLQPEPLYVA 209 (238)
Q Consensus 172 Way~lAiig~~~~~~~a~L~~~--~a~~~~k~~~~~~~~~ 209 (238)
|+-+++++|.++.+.+.+|... +-+-||+..-+.++.|
T Consensus 11 ~~Iv~gvi~gilliGllllliwk~~~~i~DrrE~~kFEkE 50 (79)
T 2knc_B 11 LVVLLSVMGAILLIGLAALLIWKLLITIHDRKEFAKFEEE 50 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!