Query psy11841
Match_columns 238
No_of_seqs 121 out of 250
Neff 5.8
Searched_HMMs 13730
Date Fri Aug 16 20:19:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11841.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/11841hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1q90n_ f.23.27.1 (N:) PetN su 11.0 86 0.0062 16.9 2.3 20 204-223 2-21 (31)
2 d1ng7a_ a.178.1.1 (A:) Soluble 9.5 43 0.0031 21.2 0.8 15 148-162 30-44 (60)
3 d3dtub2 f.17.2.1 (B:30-129) Ba 6.0 3.5E+02 0.025 17.5 4.5 28 174-201 31-58 (100)
4 d1v54a_ f.24.1.1 (A:) Mitochon 4.7 2.9E+02 0.021 23.9 4.1 56 169-226 14-74 (514)
5 d1pw4a_ f.38.1.1 (A:) Glycerol 4.7 6.4E+02 0.046 18.7 7.2 8 44-51 270-277 (447)
6 d1wjra_ b.34.9.3 (A:) Scm-like 4.5 98 0.0071 21.9 0.5 38 138-177 62-99 (127)
7 d1khba1 c.91.1.1 (A:260-622) C 4.4 70 0.0051 27.1 -0.5 21 1-22 241-261 (363)
8 d2gjva1 d.323.1.2 (A:1-134) Pu 4.4 1.6E+02 0.012 21.2 1.7 16 150-169 85-100 (134)
9 d2uuyb1 g.8.1.3 (B:24-74) Tryp 4.2 1.1E+02 0.0079 18.0 0.4 25 143-168 3-28 (51)
10 d1uaza_ f.13.1.1 (A:) Archaerh 4.1 6.8E+02 0.049 18.6 5.6 35 165-201 9-43 (236)
No 1
>d1q90n_ f.23.27.1 (N:) PetN subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=10.97 E-value=86 Score=16.92 Aligned_cols=20 Identities=30% Similarity=0.368 Sum_probs=16.0
Q ss_pred CcchhhHHHHHHHHHHHHhc
Q psy11841 204 EPLYVALVTIAVMLLFFFMQ 223 (238)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~ 223 (238)
||+-.++--+|+|.+|-|--
T Consensus 2 ep~iv~~awaa~~atfsfsl 21 (31)
T d1q90n_ 2 EPAIVQIGWAATCVMFSFSL 21 (31)
T ss_dssp CCHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEhHHHHHHHhheeeE
Confidence 66777888899999998753
No 2
>d1ng7a_ a.178.1.1 (A:) Soluble domain of poliovirus core protein 3a {Poliovirus type 1, strain Mahoney [TaxId: 12080]}
Probab=9.54 E-value=43 Score=21.23 Aligned_cols=15 Identities=13% Similarity=0.324 Sum_probs=11.3
Q ss_pred CchhhhhhhCCCCCC
Q psy11841 148 ESAKAQEICGPTASR 162 (238)
Q Consensus 148 ~s~~V~~~CG~~a~~ 162 (238)
||+|||+.|....+.
T Consensus 30 DSeEVReYCk~kgWi 44 (60)
T d1ng7a_ 30 DSQEVRDYCEKKGWI 44 (60)
T ss_dssp CCHHHHHHHHHHTCC
T ss_pred CcHHHHHHHHHCCee
Confidence 689999999764433
No 3
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=5.97 E-value=3.5e+02 Score=17.49 Aligned_cols=28 Identities=25% Similarity=0.451 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy11841 174 YILAIIGCLDVIVLAILAFILATRHIKL 201 (238)
Q Consensus 174 y~lAiig~~~~~~~a~L~~~~a~~~~k~ 201 (238)
+.+.+...+..++.+.+.+..-+.+.|+
T Consensus 31 ~v~~i~~~I~~~V~~~l~~~~~~~r~~~ 58 (100)
T d3dtub2 31 FILVIIAAITIFVTLLILYAVWRFHEKR 58 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHBTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhccC
Confidence 4566667777778888877755444333
No 4
>d1v54a_ f.24.1.1 (A:) Mitochondrial cytochrome c oxidase, subunit I {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.75 E-value=2.9e+02 Score=23.88 Aligned_cols=56 Identities=27% Similarity=0.489 Sum_probs=29.6
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHh----hhcccCCCcchhhHHHH-HHHHHHHHhcchh
Q psy11841 169 DIKWAYILAIIGCLDVIVLAILAFILAT----RHIKLQPEPLYVALVTI-AVMLLFFFMQPTS 226 (238)
Q Consensus 169 ~lGWay~lAiig~~~~~~~a~L~~~~a~----~~~k~~~~~~~~~~~~~-~~~~~~~~~~~~~ 226 (238)
++|--|.. .|.+..++.+.++...+. ......+++.|+.++|+ +++..||+..|.-
T Consensus 14 ~iG~lYl~--~~~~~~~~G~~lslliR~eL~~p~~~~~~~~~Yn~~~T~Hg~iMiF~~~~P~~ 74 (514)
T d1v54a_ 14 DIGTLYLL--FGAWAGMVGTALSLLIRAELGQPGTLLGDDQIYNVVVTAHAFVMIFFMVMPIM 74 (514)
T ss_dssp HHHHHHHH--HHHHHHHHHHHHHHHHHHHHSSSSCSSCSHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHcCCCccCCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666642 333444455555554322 23334455667778876 4555555555644
No 5
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=4.70 E-value=6.4e+02 Score=18.72 Aligned_cols=8 Identities=13% Similarity=0.401 Sum_probs=3.6
Q ss_pred hcCCcccc
Q psy11841 44 FLTPEWIG 51 (238)
Q Consensus 44 f~tP~Wl~ 51 (238)
...|..+.
T Consensus 270 ~~~~~~~~ 277 (447)
T d1pw4a_ 270 DWSPTYLK 277 (447)
T ss_dssp HHHHHHBT
T ss_pred hhhhhhcc
Confidence 33455553
No 6
>d1wjra_ b.34.9.3 (A:) Scm-like with four MBT domains protein 2, SFMBT2 (KIAA1617) {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.50 E-value=98 Score=21.87 Aligned_cols=38 Identities=18% Similarity=0.345 Sum_probs=23.2
Q ss_pred hheEEeeCCCCchhhhhhhCCCCCCCcCCCCCcchHHHHH
Q psy11841 138 ASVVIYPLGWESAKAQEICGPTASRYNLGQCDIKWAYILA 177 (238)
Q Consensus 138 lglvlfP~Gw~s~~V~~~CG~~a~~y~lG~C~lGWay~lA 177 (238)
-.--|||+||-...=..+.-| ..|+.......|.=+|-
T Consensus 62 ~S~~I~PvGwc~~~g~~L~pP--~g~~~~~~~f~W~~yL~ 99 (127)
T d1wjra_ 62 LDYRLRPVGWCQENKYRMDPP--SEIYPLKMASEWKCTLE 99 (127)
T ss_dssp TCSSCBCTTTHHHHCCCBCCC--TTTTTTSCHHHHHHHHH
T ss_pred CCCCeeeCchHhhCCccccCC--CCcccccCccCHHHHHH
Confidence 445689999976554444433 23544445799986664
No 7
>d1khba1 c.91.1.1 (A:260-622) Cytosolic phosphoenolpyruvate carboxykinase (GTP-hydrolyzing) {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.43 E-value=70 Score=27.13 Aligned_cols=21 Identities=19% Similarity=0.431 Sum_probs=14.7
Q ss_pred CCCCCccccccchhhhhhcccc
Q psy11841 1 MGSKVEYVETSQIYATNYVRNS 22 (238)
Q Consensus 1 ~~~~~~~~~~~~~y~~~y~r~s 22 (238)
||.| +.....++||+||.|+.
T Consensus 241 ~g~~-~~~k~PkIF~VNWFrKd 261 (363)
T d1khba1 241 MAQH-PAAKLPKIFHVNWFRKD 261 (363)
T ss_dssp GGGS-TTCBCCEEEEECSCCBC
T ss_pred hhcc-cccCCCcEEEEEeeeec
Confidence 4544 34456899999998873
No 8
>d2gjva1 d.323.1.2 (A:1-134) Putative cytoplasmic protein STM4215 {Salmonella typhimurium [TaxId: 90371]}
Probab=4.37 E-value=1.6e+02 Score=21.21 Aligned_cols=16 Identities=25% Similarity=0.511 Sum_probs=12.5
Q ss_pred hhhhhhhCCCCCCCcCCCCC
Q psy11841 150 AKAQEICGPTASRYNLGQCD 169 (238)
Q Consensus 150 ~~V~~~CG~~a~~y~lG~C~ 169 (238)
+.||..++| |+|++|.
T Consensus 85 D~vR~aL~G----f~ppdC~ 100 (134)
T d2gjva1 85 DRLRRSLGG----IELPDCD 100 (134)
T ss_dssp HHHHHHHTT----CCCTTCS
T ss_pred HHHHHHHcC----ccCCCCC
Confidence 667888876 8888884
No 9
>d2uuyb1 g.8.1.3 (B:24-74) Tryptase inhibitor {Brown ear tick (Rhipicephalus appendiculatus) [TaxId: 34631]}
Probab=4.17 E-value=1.1e+02 Score=18.02 Aligned_cols=25 Identities=28% Similarity=0.931 Sum_probs=14.8
Q ss_pred eeCCCCchhhhhhhCCCCC-CCcCCCC
Q psy11841 143 YPLGWESAKAQEICGPTAS-RYNLGQC 168 (238)
Q Consensus 143 fP~Gw~s~~V~~~CG~~a~-~y~lG~C 168 (238)
-|+||+.| |+.+|..+-. .|-.|||
T Consensus 3 vpigwsep-vkglckarftryycmgnc 28 (51)
T d2uuyb1 3 VPIGWSEP-VKGLCKARFTRYYCMGNC 28 (51)
T ss_dssp CCTTCCCC-CCCSBCCCEEEEEEETTE
T ss_pred ccccccch-hhHHHHhhhheeeeecch
Confidence 49999866 5667754322 2334554
No 10
>d1uaza_ f.13.1.1 (A:) Archaerhodopsin-1 {Archaeon Halobacterium sp. [TaxId: 2243]}
Probab=4.08 E-value=6.8e+02 Score=18.63 Aligned_cols=35 Identities=14% Similarity=0.115 Sum_probs=17.1
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy11841 165 LGQCDIKWAYILAIIGCLDVIVLAILAFILATRHIKL 201 (238)
Q Consensus 165 lG~C~lGWay~lAiig~~~~~~~a~L~~~~a~~~~k~ 201 (238)
+||.+-+|-+. .+++.....+++..+..+.|..++
T Consensus 9 ~~~~~~~~~wl--~~~~~~m~~~tv~f~~~~~~~~~~ 43 (236)
T d1uaza_ 9 LGDGRPETLWL--GIGTLLMLIGTFYFIVKGWGVTDK 43 (236)
T ss_dssp TSSSCTTHHHH--HHHHHHHHHHHHHHHHHHTTCCCS
T ss_pred ecCCCCeeehH--HHHHHHHHHHHHHHHHHHccCCCC
Confidence 56666666552 234444444444444455554333
Done!