RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11841
(238 letters)
>gnl|CDD|220647 pfam10242, L_HGMIC_fpl, Lipoma HMGIC fusion partner-like protein.
This is a group of proteins expressed from a series of
genes referred to as Lipoma HGMIC fusion partner-like.
The proteins carry four highly conserved transmembrane
domains in this entry. In certain instances, eg in
LHFPL5, mutations cause deafness in humans and
hypospadias, and LHFPL1 is transcribed in six liver
tumour cell lines.
Length = 181
Score = 155 bits (394), Expect = 7e-48
Identities = 66/181 (36%), Positives = 103/181 (56%), Gaps = 8/181 (4%)
Query: 25 VGVLWGIFTLCFALIVSVAFLTPEWIG----IANKGRLGLWSSC-EFDVNGFEECTGKFA 79
VGVLW + T+CFA++ VAF+ P W+G G GL+ C C G
Sbjct: 1 VGVLWALLTICFAILSVVAFVQPYWLGGSVDSPKAGSFGLYRRCIGLMDQMELTCGGYAL 60
Query: 80 EFMEISNAAFKISTVLCLVSVTLALVTIAVMLLFFFMQP---TSVYMVAAWLQIISALCM 136
+F+ I ++A++ + + L L+ + L F Q SV+ + WLQ+++ LC+
Sbjct: 61 DFLAIPSSAWQAAMFFVGLGTALLLLIACLSLFTFCRQSIISKSVFKICGWLQLVAGLCL 120
Query: 137 IASVVIYPLGWESAKAQEICGPTASRYNLGQCDIKWAYILAIIGCLDVIVLAILAFILAT 196
+ ++YPLGW+S + + +CGP + +Y+LG C I WAY LAIIG LD ++L LAF+L+
Sbjct: 121 MLGCMLYPLGWDSPEVRRLCGPESGKYSLGLCSIGWAYYLAIIGILDGLLLTFLAFVLSL 180
Query: 197 R 197
R
Sbjct: 181 R 181
>gnl|CDD|222446 pfam13903, Claudin_2, PMP-22/EMP/MP20/Claudin tight junction.
Members of this family are claudins, that form tight
junctions between cells.
Length = 170
Score = 36.6 bits (85), Expect = 0.004
Identities = 24/170 (14%), Positives = 62/170 (36%), Gaps = 11/170 (6%)
Query: 34 LCFALIVSVAFLTPEWI--GIANKGRLGLWSS---CEFDVNGFEECTGK-----FAEFME 83
L L++ VA T W+ LG + F G +
Sbjct: 2 LALGLLL-VALATDYWVEADPRRTNSLGSNGAVNTGLFSHLGLWRICFTSEVDVNNFVLT 60
Query: 84 ISNAAFKISTVLCLVSVTLALVTIAVMLLFFFMQPTSVYMVAAWLQIISALCMIASVVIY 143
+ + + + L+L+ + L + ++ ++ L +++ + + +VV+Y
Sbjct: 61 SLPDLTIVVLLFLTLGLVLSLLACVLGLCSALKKSGALLLLTGVLLLLAGILGLIAVVLY 120
Query: 144 PLGWESAKAQEICGPTASRYNLGQCDIKWAYILAIIGCLDVIVLAILAFI 193
+ + + + G + W++ LA++G + V++ +L +
Sbjct: 121 VQKVQLEIKNVLLTWMSQWQSNGLASLGWSFYLAVVGTVLVLLAGLLLLL 170
>gnl|CDD|235682 PRK06041, PRK06041, flagellar assembly protein J; Reviewed.
Length = 553
Score = 32.2 bits (74), Expect = 0.25
Identities = 27/122 (22%), Positives = 46/122 (37%), Gaps = 18/122 (14%)
Query: 97 LVSVTLALVTIAVMLLFFFMQPTSVYMVAAWLQIISALCMIASVVIY------PLGWESA 150
L+SVT V + + PT+ ++ L + + + VI PL W +
Sbjct: 197 LLSVTFVAVFAIISPILTGTDPTT--TLSLSLFLFLFIEVGGVYVIKKRVPKDPL-WHTL 253
Query: 151 KAQEICGPTASRYNLGQCDIKWAYILAIIGCLDVIVLAILAFILATRHIKLQPEPLYVAL 210
EI + K I + + V++L +L FI+ I P P+ +AL
Sbjct: 254 ---EIKTKEQKKIR------KLLIISVPLSAILVLLLLLLGFIIGPILIDKIPLPILIAL 304
Query: 211 VT 212
Sbjct: 305 PL 306
>gnl|CDD|234485 TIGR04154, archaeo_STT3, oligosaccharyl transferase, archaeosortase
A system-associated. Members of this protein family
occur, one to three members per genome, in the same
species of Euryarchaeota as contain the predicted
protein-sorting enzyme archaeosortase (TIGR04125) and
its cognate protein-sorting signal PGF-CTERM
(TIGR04126).
Length = 815
Score = 31.5 bits (72), Expect = 0.43
Identities = 20/100 (20%), Positives = 35/100 (35%), Gaps = 16/100 (16%)
Query: 95 LCLVSVTLALVTIAVMLLFFFMQPTSVYMVAAWLQIISALCMIASVVIYPLGWESAKAQE 154
L +V V ++L F F S + Q ++ L + V+ L
Sbjct: 238 LAIVGAVTFAVAAVLVLPFGFKLGFSA-TYYSLFQPLALLGVALGAVL--LAG------- 287
Query: 155 ICGPTASRYNLGQCDIKWAYILAIIGCLDVIVLAILAFIL 194
SR+ + D+ Y A + L + + +LA L
Sbjct: 288 -----LSRFWERK-DLPRYYYPAAVAGLAALGILVLALAL 321
>gnl|CDD|234402 TIGR03928, T7_EssCb_Firm, type VII secretion protein EssC,
C-terminal domain. This model describes the C-terminal
domain, or longer subunit, of the Firmicutes type VII
secretion protein EssC. This protein (homologous to EccC
in Actinobacteria) and the WXG100 target proteins are
the only homologous parts of type VII secretion between
Firmicutes and Actinobacteria [Protein fate, Protein and
peptide secretion and trafficking].
Length = 1296
Score = 30.7 bits (70), Expect = 0.77
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Query: 71 FEECTGKFAEFMEISNAAFKISTVLCLVSVTLALVTIAVMLLFFFMQPTSVYMVAAWLQI 130
+EE T K + + K L L + LV IAV +L QP ++++A+
Sbjct: 14 YEEPTDKV-KISKPPQEPDKPKRGL-LRIILPPLVMIAVTVLISIFQPRGIFIIAS--IA 69
Query: 131 ISALCMIASVVIY 143
+S + +I S Y
Sbjct: 70 MSLVTIIFSTTTY 82
Score = 29.2 bits (66), Expect = 2.4
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 209 ALVTIAVMLLFFFMQPTSVYMVAA 232
LV IAV +L QP ++++A+
Sbjct: 44 PLVMIAVTVLISIFQPRGIFIIAS 67
>gnl|CDD|219167 pfam06770, Arif-1, Actin-rearrangement-inducing factor (Arif-1).
This family consists of several Nucleopolyhedrovirus
actin-rearrangement-inducing factor (Arif-1) proteins.
In response to Autographa californica multicapsid
nuclear polyhedrosis virus (AcMNPV) infection, a
sequential rearrangement of the actin cytoskeleton
occurs this is induced by Arif-1. Arif-1 is tyrosine
phosphorylated and is located at the plasma membrane as
a component of the actin rearrangement-inducing complex.
Length = 201
Score = 29.2 bits (66), Expect = 1.2
Identities = 14/73 (19%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Query: 76 GKFAEFMEISN--AAFKISTVLCLVSVTLALVTIAVMLLFFFMQPTSVYMVAAW--LQII 131
++A ++ N + F S ++ + L LVT + ++ YM + ++
Sbjct: 28 ERYALLLDYENGTSVFNCSGLVLVYGPLLLLVTTGGLYKITSKMRSNFYMKTIIPLVTLL 87
Query: 132 SALCMIASVVIYP 144
+ LC + V P
Sbjct: 88 AMLCWMLFVSFQP 100
>gnl|CDD|226999 COG4652, COG4652, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 657
Score = 29.7 bits (67), Expect = 1.4
Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Query: 169 DIKWAYILAII----GCLDV-IVLAILAFILATRHIKLQPEPLYVALVTIAVMLLFFFM 222
DIK +L II G + I+ + +L R + L+ +++I + L+ +
Sbjct: 206 DIKGWSLLTIISRLLGFSILWILGLLFLSLLFFRRFGVLFSLLFFLMISILLSLISLLL 264
>gnl|CDD|225115 COG2205, KdpD, Osmosensitive K+ channel histidine kinase [Signal
transduction mechanisms].
Length = 890
Score = 29.9 bits (68), Expect = 1.4
Identities = 13/78 (16%), Positives = 25/78 (32%), Gaps = 10/78 (12%)
Query: 75 TGKFAEFMEISNAAFKISTVLCLVSVTLALVTIAVMLLFFFMQPTSVYMV-------AAW 127
A L + + AL T + L F ++ M+ A
Sbjct: 380 KRPNAVKWRPKIQGSWSRDYL-VAILICALATAIAIQLDKFFDLANIVMLFLLGVLVVAV 438
Query: 128 L--QIISALCMIASVVIY 143
L + + L + SV+++
Sbjct: 439 LTGRWPAVLAALLSVLVF 456
>gnl|CDD|219993 pfam08733, PalH, PalH/RIM21. PalH (also known as RIM21) is a
transmembrane protein required for proteolytic cleavage
of Rim101/PacC transcription factors which are activated
by C terminal proteolytic processing. Rim101/PacC family
proteins play a key role in pH-dependent responses and
PalH has been implicated as a pH sensor.
Length = 346
Score = 29.6 bits (67), Expect = 1.5
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 93 TVLCLVSVTLALVTIAVMLLF--FFMQPTSVYMVAAWLQIISALCMIASVVIYPLGW 147
+ LAL+TI ++LL FF+ S + V W ++ S L +A+ VI W
Sbjct: 257 CYSYKKIIPLALLTILLILLPVVFFILDISNWWVREWSELFSWLLYVAATVI-VWEW 312
>gnl|CDD|221000 pfam11145, DUF2921, Protein of unknown function (DUF2921). This
eukaryotic family of proteins has no known function.
Length = 871
Score = 29.0 bits (65), Expect = 2.5
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 169 DIKWAYILAIIGCLDVIVLAILAFILATRHIKLQPEPL-YVALVTIAVMLL 218
D W L I + + L+ + L H+K P+ L +V+LV + V L
Sbjct: 587 DSIWRMDLEGIMVVVSLTLSCVFAGLQLFHVKSHPDVLPFVSLVMLGVQAL 637
>gnl|CDD|182635 PRK10671, copA, copper exporting ATPase; Provisional.
Length = 834
Score = 28.2 bits (63), Expect = 4.5
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 83 EISNAAFKISTVLCLVSVTLALVTIAVMLLFFFMQPTSVY--MVAAWLQIISALC 135
EI A KIS V V V +ALV+ A+ FF P VY ++A + II+ C
Sbjct: 428 EIGQLADKISAVFVPVVVVIALVSAAIW-YFFGPAPQIVYTLVIATTVLIIACPC 481
>gnl|CDD|216137 pfam00822, PMP22_Claudin, PMP-22/EMP/MP20/Claudin family.
Length = 161
Score = 27.3 bits (61), Expect = 5.5
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 12/89 (13%)
Query: 59 GLWSSCEFDVNGFEECTGKFAEFMEISNAAFKISTVLCLVSVTLALVTIAVMLLFFFMQP 118
GLW +C + CTG+ + + N A + L ++S+ L I +++FFF
Sbjct: 41 GLWRNCTT-----QSCTGQISCKVLELNDALQAVQALMILSIIL---GIISLIVFFFQLF 92
Query: 119 T----SVYMVAAWLQIISALCMIASVVIY 143
T + +A + ++S LC++ IY
Sbjct: 93 TMRKGGRFKLAGIIFLVSGLCVLVGASIY 121
>gnl|CDD|234225 TIGR03480, HpnN, hopanoid biosynthesis associated RND transporter
like protein HpnN. The genomes containing members of
this family share the machinery for the biosynthesis of
hopanoid lipids. Furthermore, the genes of this family
are usually located proximal to other components of this
biological process. The proteins appear to be related to
the RND family of export proteins, particularly the
hydrophobe/amphiphile efflux-3 (HAE3) family represented
by TIGR00921.
Length = 862
Score = 27.7 bits (62), Expect = 6.2
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 102 LALVTIAVMLLFFFMQPTSVYMVAAWLQIISALCMIASVVIYPL 145
ALV I V+LL + V +V A L +++ L +A++V+ +
Sbjct: 720 YALVAITVLLLLTLRRVRDVLLVLAPL-LLAGLLTVAAMVLLGI 762
>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor
regulator (CFTR). The model describes the cystis
fibrosis transmembrane conductor regulator (CFTR) in
eukaryotes. The principal role of this protein is
chloride ion conductance. The protein is predicted to
consist of 12 transmembrane domains. Mutations or
lesions in the genetic loci have been linked to the
aetiology of asthma, bronchiectasis, chronic obstructive
pulmonary disease etc. Disease-causing mutations have
been studied by 36Cl efflux assays in vitro cell
cultures and electrophysiology, all of which point to
the impairment of chloride channel stability and not the
biosynthetic processing per se [Transport and binding
proteins, Anions].
Length = 1490
Score = 27.6 bits (61), Expect = 7.1
Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Query: 63 SCEFDVNGFEECTGKFAEFMEISNAAFKISTVLCLVSVTLALVTIAVMLLFFFMQPTSVY 122
S E + +EC FA+ E +T L ++ LV + + L F+ +
Sbjct: 828 SEEINEEDLKEC---FADERENVFETTTWNTYLRYITTNRNLVFVLIFCLVIFLAEVAAS 884
Query: 123 MVAAWL 128
++ WL
Sbjct: 885 LLGLWL 890
>gnl|CDD|220947 pfam11026, DUF2721, Protein of unknown function (DUF2721). This
family is conserved in bacteria. The function is not
known.
Length = 130
Score = 26.3 bits (59), Expect = 8.4
Identities = 11/48 (22%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 97 LVSVTLALVTIAVMLLFFF-MQPTSVYMVAAWLQIISALCMIASVVIY 143
L +++ L + ++LLF + + + A L + L +IAS++++
Sbjct: 68 LGTLSALLCVLVILLLFLSALVDLDLSLAVAILFGAAMLLLIASLLLF 115
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.330 0.139 0.436
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,967,125
Number of extensions: 1122907
Number of successful extensions: 2704
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2647
Number of HSP's successfully gapped: 238
Length of query: 238
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 144
Effective length of database: 6,768,326
Effective search space: 974638944
Effective search space used: 974638944
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 57 (25.7 bits)