RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy11841
         (238 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 34.6 bits (79), Expect = 0.030
 Identities = 31/236 (13%), Positives = 75/236 (31%), Gaps = 54/236 (22%)

Query: 2   GSKVEYV-ETSQIYATNYVRNSKAVGVLWGIFTLCFALIVSVAFLTPEWIGIANKGRLGL 60
           G+  +Y  E   +Y T Y      VG L          +  +   T +   +  +G    
Sbjct: 164 GNTDDYFEELRDLYQT-Y---HVLVGDL---IKFSAETLSELIRTTLDAEKVFTQG---- 212

Query: 61  WSSCEFDVNGFEECTGKF--AEFMEISNAAFKISTVLCLVS--VTLALVTIAVMLLFFFM 116
                 ++  + E        +++     +  +  V+ L    VT  L+      L  ++
Sbjct: 213 -----LNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYL 267

Query: 117 QPTSVYMVAAWLQIISALCMIASVVIYPLGWES----------------AKAQEICGPTA 160
           +  + +       +++A+  IA        WES                 +  E    T+
Sbjct: 268 KGATGHSQG----LVTAVA-IAET----DSWESFFVSVRKAITVLFFIGVRCYEAYPNTS 318

Query: 161 SRYNLGQCDIKW-----AYILAIIGCLDVIVLAILAFILATRHIKLQPEPLYVALV 211
              ++ +  ++      + +L+I          +  ++  T       + + ++LV
Sbjct: 319 LPPSILEDSLENNEGVPSPMLSISNLTQE---QVQDYVNKTNSHLPAGKQVEISLV 371



 Score = 30.0 bits (67), Expect = 0.92
 Identities = 17/77 (22%), Positives = 27/77 (35%), Gaps = 33/77 (42%)

Query: 188  AILAF-ILATRHIK---LQPEP-------L--YVALVTIA-VM-------LLFF---FMQ 223
            A+      A   +K   L P         L  Y AL ++A VM       ++F+    MQ
Sbjct: 1735 ALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQ 1794

Query: 224  ---------PTSVYMVA 231
                      ++  M+A
Sbjct: 1795 VAVPRDELGRSNYGMIA 1811



 Score = 29.2 bits (65), Expect = 1.6
 Identities = 33/179 (18%), Positives = 51/179 (28%), Gaps = 56/179 (31%)

Query: 1    MGSKVEYVETSQIYATNYVRNSKAVGVLW------GIFTLCFALIVSVAFLTPEWIGIAN 54
            MG    Y            + SKA   +W         T  F+ I+ +    P  + I  
Sbjct: 1631 MG-MDLY------------KTSKAAQDVWNRADNHFKDTYGFS-ILDIVINNPVNLTIHF 1676

Query: 55   KGRLG-------LWSSCEFDVNGFEECTGKFAEFME-ISNAAFKIST-VLCLVSVT---L 102
             G  G            E  V+G  +    F E  E  ++  F+    +L     T   L
Sbjct: 1677 GGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPAL 1736

Query: 103  ALVTIAVMLLF---FFMQPTSV--------YMVAAWLQIISALCMIASVVIYPLGWESA 150
             L+  A          +   +         Y         +AL  +A V    +  ES 
Sbjct: 1737 TLMEKAAFEDLKSKGLIPADATFAGHSLGEY---------AALASLADV----MSIESL 1782


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.330    0.139    0.436 

Gapped
Lambda     K      H
   0.267   0.0616    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,555,033
Number of extensions: 201732
Number of successful extensions: 352
Number of sequences better than 10.0: 1
Number of HSP's gapped: 352
Number of HSP's successfully gapped: 15
Length of query: 238
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 147
Effective length of database: 4,160,982
Effective search space: 611664354
Effective search space used: 611664354
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 56 (25.6 bits)