Query psy11842
Match_columns 163
No_of_seqs 134 out of 725
Neff 4.5
Searched_HMMs 46136
Date Fri Aug 16 20:20:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11842.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11842hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00251 fatty acid elongase; 99.7 1.5E-17 3.2E-22 142.5 9.4 96 60-157 13-127 (272)
2 KOG3071|consensus 99.7 3.1E-17 6.6E-22 141.3 9.0 97 59-157 17-125 (274)
3 PF01151 ELO: GNS1/SUR4 family 99.6 2.1E-15 4.5E-20 126.3 9.8 89 68-157 1-106 (250)
4 KOG3072|consensus 98.9 1.1E-09 2.4E-14 95.0 5.3 61 62-124 29-89 (282)
5 PF06423 GWT1: GWT1; InterPro 90.1 3.8 8.2E-05 31.8 9.1 82 75-157 8-89 (136)
6 PF08776 VASP_tetra: VASP tetr 48.9 26 0.00055 22.7 3.0 21 6-26 5-25 (40)
7 COG5548 Small integral membran 46.6 16 0.00034 28.0 2.0 21 81-102 62-82 (105)
8 PF04341 DUF485: Protein of un 31.6 2E+02 0.0043 20.7 7.7 63 77-142 26-89 (91)
9 PF06210 DUF1003: Protein of u 23.0 3.4E+02 0.0073 20.5 6.9 57 70-129 1-57 (108)
10 PF01151 ELO: GNS1/SUR4 family 22.2 1.6E+02 0.0035 24.6 4.5 44 115-158 11-54 (250)
11 PF11070 DUF2871: Protein of u 21.5 1.3E+02 0.0028 23.9 3.5 60 76-137 45-104 (132)
No 1
>PTZ00251 fatty acid elongase; Provisional
Probab=99.73 E-value=1.5e-17 Score=142.47 Aligned_cols=96 Identities=18% Similarity=0.210 Sum_probs=80.9
Q ss_pred CCccccccccccCchhHHHHHHHHHHHHHHhhHHhhcc----CCCcc-chHHHHHHHHHHHHHHHHHHHHHHH----hhh
Q psy11842 60 EDETVDNWFLMQYQWPVITILVLYLAFVLKIGPAYMQN----RKPMS-LKYIMLAYNLFQTLFNAYIVSYIFS----PGS 130 (163)
Q Consensus 60 ~D~rt~~WpLm~sp~~~i~I~i~YL~~V~~~Gpk~Mkn----RkPf~-Lk~lL~lyNl~qvv~S~ym~~e~l~----~~~ 130 (163)
..+|+++| +++||++++.++++|+++|+ .||++||+ |||++ ||+++.+||++|+++|++++++... ..+
T Consensus 13 ~~~~~~~w-l~~~~~~~~~i~~~Yl~~V~-~Gp~~M~~~~~~Rkp~~~Lr~~l~~yNl~l~v~s~~~~~~~~~~~~~~~~ 90 (272)
T PTZ00251 13 DGHAVQKW-LASNVDICVYIAAAYLTFVF-KGPQLVDAIFHGNPPVPLIKKCWALWNIGLSVFSMYGVYRVVPPLLNNLR 90 (272)
T ss_pred CcHHHHHH-HHhCCHHHHHHHHHHHHHHH-HHHHHHhhccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35889999 89999999999999999999 99999975 99999 9999999999999999999998863 333
Q ss_pred c-CC--------CCh-hhHHHHHHHHHHHHHhhhHHh
Q psy11842 131 F-SY--------LKP-MSLKYIMLAYNLFQTLFNAYI 157 (163)
Q Consensus 131 ~-~~--------~~P-~s~~~~~~~w~~f~~~~~~~~ 157 (163)
. +. .+| .+.+++..+|+||+||+-..+
T Consensus 91 ~~g~~~~~C~~~~~~~~~~~~~~~~~~f~lsK~~El~ 127 (272)
T PTZ00251 91 KYGLHDTLCTFREDEFYTGKVGVAMGLFSISKVPEFG 127 (272)
T ss_pred hcCcceeeecCCCCcchhHHHHHHHHHHHHHHHHHHH
Confidence 2 21 123 247889999999999986543
No 2
>KOG3071|consensus
Probab=99.71 E-value=3.1e-17 Score=141.28 Aligned_cols=97 Identities=32% Similarity=0.449 Sum_probs=86.1
Q ss_pred cCCccccccccccCchhHHHHHHHHHHHHHHhhHHhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-----
Q psy11842 59 LEDETVDNWFLMQYQWPVITILVLYLAFVLKIGPAYMQNRKPMSLKYIMLAYNLFQTLFNAYIVSYIFSPGSFSY----- 133 (163)
Q Consensus 59 ~~D~rt~~WpLm~sp~~~i~I~i~YL~~V~~~Gpk~MknRkPf~Lk~lL~lyNl~qvv~S~ym~~e~l~~~~~~~----- 133 (163)
..|++++ ||++++|+++..++.+|+ +|.+.||++|+||||++||+++.+||+.|+++|+.++.+.....|...
T Consensus 17 ~~~~~v~-~~~l~s~~~~~~il~~yl-~v~~~G~~~m~nrkp~~l~~~~~vyN~~~vl~s~~i~~~~~~~~~~~~~y~l~ 94 (274)
T KOG3071|consen 17 SPDDRVR-SPLLSSPWPLLSILLAYL-FVLKLGPKLMRNRKPLKLRGLSQVYNLGQVLLSAAIFLEGELWRWLKTAYNLR 94 (274)
T ss_pred CCCcccc-chhccCcHHHHHHHHHHH-HHHHhcHhhhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccceE
Confidence 5567666 899999999999999999 666799999999999999999999999999999998888888777642
Q ss_pred -------CChhhHHHHHHHHHHHHHhhhHHh
Q psy11842 134 -------LKPMSLKYIMLAYNLFQTLFNAYI 157 (163)
Q Consensus 134 -------~~P~s~~~~~~~w~~f~~~~~~~~ 157 (163)
.+|...|+...||+||+|||-..+
T Consensus 95 c~~~~~~~~~~~~r~~~~~~~yylsKflel~ 125 (274)
T KOG3071|consen 95 CQPCFPSDHEPKLRERFWSYLYYLSKFLELL 125 (274)
T ss_pred EEecCCCCCCcceeehHHHHHHHHHHHHHHH
Confidence 358899999999999999997654
No 3
>PF01151 ELO: GNS1/SUR4 family; InterPro: IPR002076 This group of eukaryotic integral membrane proteins are evolutionary related, but exact function has not yet clearly been established. The proteins have from 290 to 435 amino acid residues. Structurally, they seem to be formed of three sections: a N-terminal region with two transmembrane domains, a central hydrophilic loop and a C-terminal region that contains from one to three transmembrane domains. Members of this family are involved in long chain fatty acid elongation systems that produce the 26-carbon precursors for ceramide and sphingolipid synthesis []. Predicted to be integral membrane proteins, in eukaryotes they are probably located on the endoplasmic reticulum. Yeast ELO3 (P40319 from SWISSPROT) affects plasma membrane H+-ATPase activity, and may act on a glucose-signalling pathway that controls the expression of several genes that are transcriptionally regulated by glucose such as PMA1 []. ; GO: 0016021 integral to membrane
Probab=99.62 E-value=2.1e-15 Score=126.27 Aligned_cols=89 Identities=35% Similarity=0.651 Sum_probs=74.0
Q ss_pred ccccCchhHHHHHHHHHHHHHHhhHHhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHh--hh------cCCCC----
Q psy11842 68 FLMQYQWPVITILVLYLAFVLKIGPAYMQNRKPMSLKYIMLAYNLFQTLFNAYIVSYIFSP--GS------FSYLK---- 135 (163)
Q Consensus 68 pLm~sp~~~i~I~i~YL~~V~~~Gpk~MknRkPf~Lk~lL~lyNl~qvv~S~ym~~e~l~~--~~------~~~~~---- 135 (163)
.|++||++++.++++|+++|+ .||++||+|||++||+++.+||++|+++|++++++++.. .+ .+..|
T Consensus 1 Wl~~~~~~~~~~~~~Yl~~V~-~g~~~m~~Rkp~~Lk~~~~~~N~~l~~~S~~~~~~~~~~~~~~~~~~g~~~~~C~~~~ 79 (250)
T PF01151_consen 1 WLMSNPWFPILIVVLYLLFVF-LGPRFMKNRKPFNLKTLIIVYNLFLVVFSAYMFYGILPALFSSLFKGGLYSSFCQPVD 79 (250)
T ss_pred CcccCCHHHHHHHHHHHHHHH-HHHHHHhhCCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccC
Confidence 157899999999999999997 999999999999999999999999999999999999843 21 11122
Q ss_pred -----hhhHHHHHHHHHHHHHhhhHHh
Q psy11842 136 -----PMSLKYIMLAYNLFQTLFNAYI 157 (163)
Q Consensus 136 -----P~s~~~~~~~w~~f~~~~~~~~ 157 (163)
+...+.+-.+|+||.||+-..+
T Consensus 80 ~~~~~~~~~~~~~~~~~fylSK~~Ell 106 (250)
T PF01151_consen 80 FDPDSYSSGRVGFWYWLFYLSKYYELL 106 (250)
T ss_pred CCCcccccchHHHHHHHHHHHHHHHHH
Confidence 3355777788889999987654
No 4
>KOG3072|consensus
Probab=98.93 E-value=1.1e-09 Score=95.02 Aligned_cols=61 Identities=25% Similarity=0.347 Sum_probs=51.6
Q ss_pred ccccccccccCchhHHHHHHHHHHHHHHhhHHhhccCCCccchHHHHHHHHHHHHHHHHHHHH
Q psy11842 62 ETVDNWFLMQYQWPVITILVLYLAFVLKIGPAYMQNRKPMSLKYIMLAYNLFQTLFNAYIVSY 124 (163)
Q Consensus 62 ~rt~~WpLm~sp~~~i~I~i~YL~~V~~~Gpk~MknRkPf~Lk~lL~lyNl~qvv~S~ym~~e 124 (163)
.++..| +.+++...+.++++|++.|+ .|+++|+|||||+|+++|.+||.+++++|+.-+..
T Consensus 29 ~~~~~~-~~~~~~~si~is~~Y~v~if-~~q~fM~~RkpF~L~~pL~lWn~~La~FSi~g~lr 89 (282)
T KOG3072|consen 29 ESVVKF-FQEHWPLSIHISIAYLVLIF-GGQNFMKNRKPFQLTKPLNLWNFCLAAFSILGALR 89 (282)
T ss_pred HHHHHH-HHhccchhHHHHHHHHHHHH-HHHHHHhcCCCCCCcChHHHHHHHHHHHHHHHHHH
Confidence 445555 34555567999999999999 99999999999999999999999999999984443
No 5
>PF06423 GWT1: GWT1; InterPro: IPR009447 Glycosylphosphatidylinositol (GPI) is a conserved post-translational modification to anchor cell surface proteins to plasma membrane in eukaryotes. GWT1 is involved in GPI anchor biosynthesis; it is required for inositol acylation in yeast [].; GO: 0016746 transferase activity, transferring acyl groups, 0006506 GPI anchor biosynthetic process, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane
Probab=90.12 E-value=3.8 Score=31.79 Aligned_cols=82 Identities=20% Similarity=0.229 Sum_probs=50.1
Q ss_pred hHHHHHHHHHHHHHHhhHHhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHhhh
Q psy11842 75 PVITILVLYLAFVLKIGPAYMQNRKPMSLKYIMLAYNLFQTLFNAYIVSYIFSPGSFSYLKPMSLKYIMLAYNLFQTLFN 154 (163)
Q Consensus 75 ~~i~I~i~YL~~V~~~Gpk~MknRkPf~Lk~lL~lyNl~qvv~S~ym~~e~l~~~~~~~~~P~s~~~~~~~w~~f~~~~~ 154 (163)
..+.-+++|++-+- .|..+.++++...-+..-........++....+...+.........|.|+|++++.|...-.-+|
T Consensus 8 S~~GY~aIyl~g~~-~G~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~vSRRlaNl~Yvlwv~a~n 86 (136)
T PF06423_consen 8 SLPGYLAIYLIGVS-LGRYILPPSSSSNSSSRRQWIKLLIKLLILSFIFWALYYLLNSYIEPVSRRLANLPYVLWVLAFN 86 (136)
T ss_pred hHHHHHHHHHHHHH-HhhhhhCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHhcchHHHHHHHHHH
Confidence 34556688888887 89999999887721111111112222222222222333333377889999999999998887777
Q ss_pred HHh
Q psy11842 155 AYI 157 (163)
Q Consensus 155 ~~~ 157 (163)
...
T Consensus 87 ~~~ 89 (136)
T PF06423_consen 87 TFF 89 (136)
T ss_pred HHH
Confidence 654
No 6
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=48.92 E-value=26 Score=22.67 Aligned_cols=21 Identities=38% Similarity=0.553 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHHHHHHHhhc
Q psy11842 6 LPRFLQEKVDIVRSEMVEARE 26 (163)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~a~~ 26 (163)
++++=|+..++||.|+.-+++
T Consensus 5 le~~KqEIL~EvrkEl~K~K~ 25 (40)
T PF08776_consen 5 LERLKQEILEEVRKELQKVKE 25 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 688999999999999998875
No 7
>COG5548 Small integral membrane protein [Function unknown]
Probab=46.56 E-value=16 Score=27.96 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=15.8
Q ss_pred HHHHHHHHHhhHHhhccCCCcc
Q psy11842 81 VLYLAFVLKIGPAYMQNRKPMS 102 (163)
Q Consensus 81 i~YL~~V~~~Gpk~MknRkPf~ 102 (163)
+.=++.++ .+++.|+.|||.-
T Consensus 62 ~s~~Ll~~-~~~R~~~sRKpvP 82 (105)
T COG5548 62 VSAALLVF-FALRLVRSRKPVP 82 (105)
T ss_pred HHHHHHHh-cchhccccCCCcc
Confidence 33445565 8999999999964
No 8
>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins.
Probab=31.55 E-value=2e+02 Score=20.67 Aligned_cols=63 Identities=10% Similarity=0.081 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHhhHHhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-CChhhHHHH
Q psy11842 77 ITILVLYLAFVLKIGPAYMQNRKPMSLKYIMLAYNLFQTLFNAYIVSYIFSPGSFSY-LKPMSLKYI 142 (163)
Q Consensus 77 i~I~i~YL~~V~~~Gpk~MknRkPf~Lk~lL~lyNl~qvv~S~ym~~e~l~~~~~~~-~~P~s~~~~ 142 (163)
+....+|.+.+- .-|.+|..+-.-.--.+=.++-++|.+++..++. ++..+.+. +||.+.++.
T Consensus 26 l~~y~~~~ll~a-~~p~~m~~~v~~G~~t~g~~~g~~~~~~~~~l~~--~Yv~~An~~~D~l~~~i~ 89 (91)
T PF04341_consen 26 LVLYFGFVLLSA-FAPELMATPVFPGSLTLGIVLGLGQIVFAWVLTW--LYVRRANREFDPLARAIR 89 (91)
T ss_pred HHHHHHHHHHHH-HCHHHHcCcccCCCcCHHHHHHHHHHHHHHHHHH--HHHHHHccccCHHHHHHH
Confidence 344445555554 6789998643324333445566677766654444 34445555 899988764
No 9
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=23.02 E-value=3.4e+02 Score=20.51 Aligned_cols=57 Identities=18% Similarity=0.116 Sum_probs=34.9
Q ss_pred ccCchhHHHHHHHHHHHHHHhhHHhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy11842 70 MQYQWPVITILVLYLAFVLKIGPAYMQNRKPMSLKYIMLAYNLFQTLFNAYIVSYIFSPG 129 (163)
Q Consensus 70 m~sp~~~i~I~i~YL~~V~~~Gpk~MknRkPf~Lk~lL~lyNl~qvv~S~ym~~e~l~~~ 129 (163)
++|+...+..++.....+. ...+.-.+++|+--. .++-|+++++.+++.+.-++.+-
T Consensus 1 ~GS~~Fi~~~~~~~~~Wi~--~N~~~~~~~~fDpyP-FilLnl~lS~~Aa~~ap~IlmsQ 57 (108)
T PF06210_consen 1 GGSWTFIIIFTVFLAVWIL--LNILAPPRPAFDPYP-FILLNLVLSLEAAYQAPLILMSQ 57 (108)
T ss_pred CCcHHHHHHHHHHHHHHHH--HHhhccccCCCCCcc-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566666555555554443 444444445666543 77789999998888776655443
No 10
>PF01151 ELO: GNS1/SUR4 family; InterPro: IPR002076 This group of eukaryotic integral membrane proteins are evolutionary related, but exact function has not yet clearly been established. The proteins have from 290 to 435 amino acid residues. Structurally, they seem to be formed of three sections: a N-terminal region with two transmembrane domains, a central hydrophilic loop and a C-terminal region that contains from one to three transmembrane domains. Members of this family are involved in long chain fatty acid elongation systems that produce the 26-carbon precursors for ceramide and sphingolipid synthesis []. Predicted to be integral membrane proteins, in eukaryotes they are probably located on the endoplasmic reticulum. Yeast ELO3 (P40319 from SWISSPROT) affects plasma membrane H+-ATPase activity, and may act on a glucose-signalling pathway that controls the expression of several genes that are transcriptionally regulated by glucose such as PMA1 []. ; GO: 0016021 integral to membrane
Probab=22.21 E-value=1.6e+02 Score=24.60 Aligned_cols=44 Identities=30% Similarity=0.624 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHhhhHHhh
Q psy11842 115 TLFNAYIVSYIFSPGSFSYLKPMSLKYIMLAYNLFQTLFNAYIV 158 (163)
Q Consensus 115 vv~S~ym~~e~l~~~~~~~~~P~s~~~~~~~w~~f~~~~~~~~~ 158 (163)
.+..+|++.-.....+..+..|...|-...+|..+++.|+++..
T Consensus 11 ~~~~~Yl~~V~~g~~~m~~Rkp~~Lk~~~~~~N~~l~~~S~~~~ 54 (250)
T PF01151_consen 11 LIVVLYLLFVFLGPRFMKNRKPFNLKTLIIVYNLFLVVFSAYMF 54 (250)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCcccChHHHHHHHHHHHHHHHHH
Confidence 34445555544555566677899999999999999999999864
No 11
>PF11070 DUF2871: Protein of unknown function (DUF2871); InterPro: IPR021299 This family of proteins has no known function.
Probab=21.49 E-value=1.3e+02 Score=23.86 Aligned_cols=60 Identities=15% Similarity=0.113 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHhhHHhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChh
Q psy11842 76 VITILVLYLAFVLKIGPAYMQNRKPMSLKYIMLAYNLFQTLFNAYIVSYIFSPGSFSYLKPM 137 (163)
Q Consensus 76 ~i~I~i~YL~~V~~~Gpk~MknRkPf~Lk~lL~lyNl~qvv~S~ym~~e~l~~~~~~~~~P~ 137 (163)
.+.-.+.++++.. --|-.+--+--+.+....+||+.+++-.+.|+...+.+..+...++.
T Consensus 45 lvLG~~~fLi~~l--l~k~f~l~~~k~f~~f~~~YniGl~~t~~mm~vrGi~qV~g~~~~~~ 104 (132)
T PF11070_consen 45 LVLGMIFFLILLL--LEKNFDLSKNKKFKKFFIVYNIGLVLTVGMMLVRGILQVLGSELSNA 104 (132)
T ss_pred HHHHHHHHHHHHH--HHHHhhhhhccccCeEEEEEehhHHHHHHHHHHHHHHHHcCCCCchH
Confidence 3344444444332 33433323334578899999999999999999988888887776433
Done!