Query psy11842
Match_columns 163
No_of_seqs 134 out of 725
Neff 4.5
Searched_HMMs 29240
Date Fri Aug 16 20:20:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11842.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11842hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1use_A VAsp, vasodilator-stimu 46.7 18 0.00061 23.0 3.0 22 5-26 8-29 (45)
2 1k8k_E P21, ARP2/3 complex 21 22.8 57 0.0019 26.1 2.9 23 4-26 127-149 (178)
3 1urq_A M-tomosyn isoform; tran 13.3 1.3E+02 0.0043 19.7 2.5 18 9-26 8-25 (63)
4 3hi2_B Motility quorum-sensing 8.8 96 0.0033 22.5 0.7 14 94-107 3-17 (101)
5 2kdt_A Neuroendocrine converta 8.8 76 0.0026 20.0 0.1 13 7-19 31-43 (45)
6 4b0f_A C4B-binding protein alp 7.3 2.4E+02 0.0083 19.0 2.1 27 90-116 19-46 (65)
7 2l2l_B Methyl-CPG-binding doma 6.9 2.9E+02 0.0098 16.6 2.1 16 11-26 16-31 (36)
8 2knu_A E1_peptide, genome poly 6.3 1.6E+02 0.0056 16.7 0.7 20 66-85 6-25 (29)
9 3k6t_A Female germline-specifi 5.3 4.4E+02 0.015 17.3 2.5 19 6-24 30-48 (60)
10 2lqh_B Forkhead box O3, FOXO3A 7.3 1.4E+02 0.0049 18.9 0.0 10 15-24 43-52 (52)
No 1
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=46.72 E-value=18 Score=23.01 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=19.7
Q ss_pred hhhHHHHHHHHHHHHHHHHhhc
Q psy11842 5 VLPRFLQEKVDIVRSEMVEARE 26 (163)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~a~~ 26 (163)
=|+++=|+..++||.|+.-+++
T Consensus 8 dle~~KqEIL~E~RkElqK~K~ 29 (45)
T 1use_A 8 DLQRVKQELLEEVKKELQKVKE 29 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999998885
No 2
>1k8k_E P21, ARP2/3 complex 21 kDa subunit, P21-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: a.148.1.1 PDB: 1tyq_E* 1u2v_E* 2p9i_E* 2p9k_E* 2p9l_E 2p9n_E* 2p9p_E* 2p9s_E* 2p9u_E* 3dxk_E* 3dxm_E* 3rse_E
Probab=22.82 E-value=57 Score=26.05 Aligned_cols=23 Identities=22% Similarity=0.195 Sum_probs=19.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhc
Q psy11842 4 EVLPRFLQEKVDIVRSEMVEARE 26 (163)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~a~~ 26 (163)
|++.+||+|.-||.+.||.+-.=
T Consensus 127 d~lR~Yl~QlRqEl~~RL~ervf 149 (178)
T 1k8k_E 127 EVMRAYLQQLRQETGLRLCEKVF 149 (178)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 78899999999999999987554
No 3
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=13.33 E-value=1.3e+02 Score=19.72 Aligned_cols=18 Identities=22% Similarity=0.113 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHhhc
Q psy11842 9 FLQEKVDIVRSEMVEARE 26 (163)
Q Consensus 9 ~~~~~~~~~~~~~~~a~~ 26 (163)
=+|..|++|.+.|..+.+
T Consensus 8 ~v~~qv~ev~~iM~~ni~ 25 (63)
T 1urq_A 8 GVKGAASGVVGELARARL 25 (63)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 468889999999999885
No 4
>3hi2_B Motility quorum-sensing regulator MQSR; toxin-antitoxin system, Zn-binding protein, MQSA, YGIU B3022, B3021, stress response; 2.00A {Escherichia coli k-12}
Probab=8.84 E-value=96 Score=22.47 Aligned_cols=14 Identities=29% Similarity=0.484 Sum_probs=10.0
Q ss_pred hhccCCC-ccchHHH
Q psy11842 94 YMQNRKP-MSLKYIM 107 (163)
Q Consensus 94 ~MknRkP-f~Lk~lL 107 (163)
-|++|+| ++|..+-
T Consensus 3 ~MEKrtPhy~L~~ik 17 (101)
T 3hi2_B 3 HMEKRTPHTRLSQVK 17 (101)
T ss_dssp -CEESSCSSCHHHHH
T ss_pred cCccCCCCCcHHHHH
Confidence 3899999 7876654
No 5
>2kdt_A Neuroendocrine convertase 1; secretory granules, prohorme convertase, calcium, cleavage on PAIR of basic residues, cytoplasmic vesicle; NMR {Mus musculus} PDB: 2ke3_A
Probab=8.81 E-value=76 Score=19.98 Aligned_cols=13 Identities=38% Similarity=0.595 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHHH
Q psy11842 7 PRFLQEKVDIVRS 19 (163)
Q Consensus 7 ~~~~~~~~~~~~~ 19 (163)
||-||.++||++.
T Consensus 31 DrLlQAL~~il~~ 43 (45)
T 2kdt_A 31 DRLLQALMDILNE 43 (45)
T ss_dssp TTHHHHHHHHTTT
T ss_pred HHHHHHHHHHHcc
Confidence 6789999999864
No 6
>4b0f_A C4B-binding protein alpha chain; complement system, immune system; 2.80A {Homo sapiens}
Probab=7.33 E-value=2.4e+02 Score=18.96 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=22.2
Q ss_pred hhHHhhcc-CCCccchHHHHHHHHHHHH
Q psy11842 90 IGPAYMQN-RKPMSLKYIMLAYNLFQTL 116 (163)
Q Consensus 90 ~Gpk~Mkn-RkPf~Lk~lL~lyNl~qvv 116 (163)
.|.++|+- -.|.+.|..+-+|-+.+=+
T Consensus 19 ~G~klmqCLp~p~dVk~ALEvYKlsLEI 46 (65)
T 4b0f_A 19 TGKRLMQCLPNPEDVKMALEVYKLSLEI 46 (65)
T ss_dssp HHHHHTTSSSSHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhcCCCHHHHhHHhheeechhhH
Confidence 69999996 5789999999999866543
No 7
>2l2l_B Methyl-CPG-binding domain protein 2; DNA methylation, coiled-coil, NURD, MBD2, P66alpha, transfer; NMR {Homo sapiens}
Probab=6.93 E-value=2.9e+02 Score=16.58 Aligned_cols=16 Identities=38% Similarity=0.470 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHhhc
Q psy11842 11 QEKVDIVRSEMVEARE 26 (163)
Q Consensus 11 ~~~~~~~~~~~~~a~~ 26 (163)
.++|..+|.+|.+|-.
T Consensus 16 E~rV~~aR~rL~eaL~ 31 (36)
T 2l2l_B 16 EERVQQVRKKLEEALM 31 (36)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4689999999999974
No 8
>2knu_A E1_peptide, genome polyprotein; HCV, pretransmembrane, glycoprotein, envelope protein, transmembrane, membrane protein; NMR {Hepatitis c virus}
Probab=6.31 E-value=1.6e+02 Score=16.74 Aligned_cols=20 Identities=25% Similarity=0.391 Sum_probs=14.0
Q ss_pred ccccccCchhHHHHHHHHHH
Q psy11842 66 NWFLMQYQWPVITILVLYLA 85 (163)
Q Consensus 66 ~WpLm~sp~~~i~I~i~YL~ 85 (163)
.|-+|.|+.+.+..+++|+.
T Consensus 6 awdmMmnwspt~~~~~a~~l 25 (29)
T 2knu_A 6 AWDMMMNWSPTAALVVAQLL 25 (29)
T ss_dssp GGGTTCCSCCTTHHHHHHHC
T ss_pred HHHHHhccCchHHHHHHHHH
Confidence 47777877777777776653
No 9
>3k6t_A Female germline-specific tumor suppressor GLD-1; QUA1 homodimerization domain, helix-turn-helix motif, hydrophobic homodimer interface; 2.04A {Caenorhabditis elegans} PDB: 3kbl_A
Probab=5.34 E-value=4.4e+02 Score=17.34 Aligned_cols=19 Identities=21% Similarity=0.525 Sum_probs=12.5
Q ss_pred hhHHHHHHHHHHHHHHHHh
Q psy11842 6 LPRFLQEKVDIVRSEMVEA 24 (163)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~a 24 (163)
+.|-|.+-.+.||++|=-.
T Consensus 30 lerLLdeEI~RVR~~Lf~~ 48 (60)
T 3k6t_A 30 VERLLDDEIGRVRVALFQT 48 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcc
Confidence 5566667777777776543
No 10
>2lqh_B Forkhead box O3, FOXO3A; promiscuous binding, intrinsic disorder, transcription; NMR {Homo sapiens} PDB: 2lqi_B
Probab=7.29 E-value=1.4e+02 Score=18.88 Aligned_cols=10 Identities=50% Similarity=0.919 Sum_probs=7.2
Q ss_pred HHHHHHHHHh
Q psy11842 15 DIVRSEMVEA 24 (163)
Q Consensus 15 ~~~~~~~~~a 24 (163)
.++|||++.|
T Consensus 43 siirselmda 52 (52)
T 2lqh_B 43 SIIRSELMDA 52 (52)
Confidence 4678888765
Done!