Query psy11842
Match_columns 163
No_of_seqs 134 out of 725
Neff 4.5
Searched_HMMs 13730
Date Fri Aug 16 20:20:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11842.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/11842hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1m56c_ f.25.1.1 (C:) Bacteria 11.6 2.7E+02 0.02 20.3 11.0 82 71-159 13-103 (265)
2 d2gena1 a.4.1.9 (A:6-75) Proba 9.5 86 0.0063 18.0 2.2 22 3-24 49-70 (70)
3 d1gpma3 d.52.2.1 (A:405-525) G 8.3 1.3E+02 0.0096 20.4 3.1 24 9-32 19-42 (121)
4 d1jt6a1 a.4.1.9 (A:2-72) Multi 7.1 1.4E+02 0.01 17.1 2.5 22 3-24 50-71 (71)
5 d1lbqa_ c.92.1.1 (A:) Ferroche 6.7 1.3E+02 0.0095 23.5 2.7 23 7-29 308-330 (356)
6 d1ez3a_ a.47.2.1 (A:) Syntaxin 6.5 1.6E+02 0.012 18.8 2.8 21 4-25 3-23 (124)
7 d1v54c_ f.25.1.1 (C:) Mitochon 5.5 5.2E+02 0.038 18.7 11.1 81 71-158 11-101 (259)
8 d1nb5i_ d.17.1.2 (I:) Cystatin 5.0 1.9E+02 0.014 19.0 2.3 16 10-25 16-31 (98)
9 d1e7ua1 a.118.1.6 (A:525-725) 4.6 1.3E+02 0.0092 22.0 1.2 18 4-21 130-147 (201)
10 d1szia_ a.24.23.1 (A:) Mannose 4.5 1.9E+02 0.014 21.7 2.3 18 5-22 149-166 (226)
No 1
>d1m56c_ f.25.1.1 (C:) Bacterial aa3 type cytochrome c oxidase subunit III {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=11.62 E-value=2.7e+02 Score=20.33 Aligned_cols=82 Identities=13% Similarity=0.225 Sum_probs=45.0
Q ss_pred cCchhHHHHHHHHHHHHHHhhHHhhccCCCccchHHHHHHHHHHHHHHHHH-HHHHHHhhhcCCCChhhHHHHHHHHH--
Q psy11842 71 QYQWPVITILVLYLAFVLKIGPAYMQNRKPMSLKYIMLAYNLFQTLFNAYI-VSYIFSPGSFSYLKPMSLKYIMLAYN-- 147 (163)
Q Consensus 71 ~sp~~~i~I~i~YL~~V~~~Gpk~MknRkPf~Lk~lL~lyNl~qvv~S~ym-~~e~l~~~~~~~~~P~s~~~~~~~w~-- 147 (163)
.||||.+....+-...+ ..-.++..-.| .+.+-.++..+++.+. .....+.+..+.++++..+..+..-|
T Consensus 13 ~SpWPi~~s~~l~~~~~--g~~~~~~~~~~-----~~~~~g~~~~l~~l~~W~~dv~~e~~~G~~t~~v~~~~k~Gm~~F 85 (265)
T d1m56c_ 13 PSIWPFMASVGAFVMLF--GAVLWMHGSGP-----WMGLIGLVVVLYTMFGWWSDVVTESLEGDHTPVVRLGLRWGFILF 85 (265)
T ss_dssp CCSHHHHHHHHHHHHHH--HHHHHHTTSCT-----HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHH--HHHHHHHcccH-----HHHHHHHHHHHHHHHHHHHHHhHHHHcCCCchhhhhhhHHhhHHH
Confidence 47777766555554443 23344543222 2233344444455443 23456777788888886666555433
Q ss_pred ------HHHHhhhHHhhh
Q psy11842 148 ------LFQTLFNAYIVS 159 (163)
Q Consensus 148 ------~f~~~~~~~~~~ 159 (163)
+|.+.|-+|..+
T Consensus 86 i~SEvm~F~~~f~~yf~~ 103 (265)
T d1m56c_ 86 IMSEVMFFSAWFWSFFKH 103 (265)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 356777777653
No 2
>d2gena1 a.4.1.9 (A:6-75) Probable transcriptional regulator PA1836 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=9.54 E-value=86 Score=18.00 Aligned_cols=22 Identities=9% Similarity=0.067 Sum_probs=12.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHh
Q psy11842 3 YEVLPRFLQEKVDIVRSEMVEA 24 (163)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~a 24 (163)
.+++.++.++..+.+++.+..|
T Consensus 49 ~~~~~~~~~~~~~~l~~~~~~A 70 (70)
T d2gena1 49 GELYLAGIGQYAALLEAGFARA 70 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHccC
Confidence 4555666666666666555443
No 3
>d1gpma3 d.52.2.1 (A:405-525) GMP synthetase C-terminal dimerisation domain {Escherichia coli [TaxId: 562]}
Probab=8.26 E-value=1.3e+02 Score=20.42 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHhhccCCCcc
Q psy11842 9 FLQEKVDIVRSEMVEAREYPKLGK 32 (163)
Q Consensus 9 ~~~~~~~~~~~~~~~a~~~~~~~~ 32 (163)
-|||+=++|++|+.++.-+.++-+
T Consensus 19 ilReAD~Iv~~~L~~~gly~~iwQ 42 (121)
T d1gpma3 19 LLRRADAIFIEELRKADLYDKVSQ 42 (121)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGSSE
T ss_pred HHHHCCHHHHHHHHHcCCcccccc
Confidence 478889999999999987767666
No 4
>d1jt6a1 a.4.1.9 (A:2-72) Multidrug binding protein QacR {Staphylococcus aureus [TaxId: 1280]}
Probab=7.13 E-value=1.4e+02 Score=17.12 Aligned_cols=22 Identities=18% Similarity=0.114 Sum_probs=13.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHh
Q psy11842 3 YEVLPRFLQEKVDIVRSEMVEA 24 (163)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~a 24 (163)
.+++.++.++..+..+.|..+|
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~A 71 (71)
T d1jt6a1 50 LEILNIEESKWQEQWKKEQIKA 71 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHHHHhhcCC
Confidence 4566666666666666555443
No 5
>d1lbqa_ c.92.1.1 (A:) Ferrochelatase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.69 E-value=1.3e+02 Score=23.47 Aligned_cols=23 Identities=22% Similarity=0.495 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHHHHHHhhccCC
Q psy11842 7 PRFLQEKVDIVRSEMVEAREYPK 29 (163)
Q Consensus 7 ~~~~~~~~~~~~~~~~~a~~~~~ 29 (163)
|+|++-++|.|+++|.....+|+
T Consensus 308 p~fi~~La~lV~~~l~~~~~~s~ 330 (356)
T d1lbqa_ 308 QTFIEGMADLVKSHLQSNQLYSN 330 (356)
T ss_dssp HHHHHHHHHHHHHHHHHCCSSCT
T ss_pred HHHHHHHHHHHHHHhccCcccCc
Confidence 78999999999999999777665
No 6
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=6.50 E-value=1.6e+02 Score=18.83 Aligned_cols=21 Identities=14% Similarity=0.358 Sum_probs=15.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHhh
Q psy11842 4 EVLPRFLQEKVDIVRSEMVEAR 25 (163)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~a~ 25 (163)
+.+|.|+++ |+.+|.+|..=.
T Consensus 3 ~~m~~Ff~e-V~~Ir~~I~~i~ 23 (124)
T d1ez3a_ 3 RFMDEFFEQ-VEEIRGFIDKIA 23 (124)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHH
T ss_pred chHHHHHHH-HHHHHHHHHHHH
Confidence 357888877 788888876544
No 7
>d1v54c_ f.25.1.1 (C:) Mitochondrial cytochrome c oxidase, subunit III {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.47 E-value=5.2e+02 Score=18.67 Aligned_cols=81 Identities=15% Similarity=0.155 Sum_probs=45.6
Q ss_pred cCchhHHHHHHHHHHHHHHhhHHhhccCCCccchHHHHHHHHHHHHHHHHHHH-HHHHhh-hcCCCChhhHHHHHHHHH-
Q psy11842 71 QYQWPVITILVLYLAFVLKIGPAYMQNRKPMSLKYIMLAYNLFQTLFNAYIVS-YIFSPG-SFSYLKPMSLKYIMLAYN- 147 (163)
Q Consensus 71 ~sp~~~i~I~i~YL~~V~~~Gpk~MknRkPf~Lk~lL~lyNl~qvv~S~ym~~-e~l~~~-~~~~~~P~s~~~~~~~w~- 147 (163)
.||||.+....+-...+ ..-.+|..-.+ .+.+-.+...+++.+.-. +..+.+ +.+..+++..+..+...|
T Consensus 11 ~SpWP~~~s~~~~~~~~--g~~~~~~~~~~-----~~~~~gl~~~~~~~~~W~rdvi~E~~~~G~ht~~v~~~~~~G~~l 83 (259)
T d1v54c_ 11 PSPWPLTGALSALLMTS--GLTMWFHFNSM-----TLLMIGLTTNMLTMYQWWRDVIRESTFQGHHTPAVQKGLRYGMIL 83 (259)
T ss_dssp CCSHHHHHHHHHHHHHH--HHHHHHHHSCC-----HHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHH--HHHHHHHhccH-----HHHHHHHHHHHHHHHHHHHHHhhccccCCCccHHHhhhhHHHHHH
Confidence 37777766555544332 23344543211 223335555555555433 355555 467788888888877665
Q ss_pred -------HHHHhhhHHhh
Q psy11842 148 -------LFQTLFNAYIV 158 (163)
Q Consensus 148 -------~f~~~~~~~~~ 158 (163)
+|.+.|-||..
T Consensus 84 Fi~SEv~~F~~~F~ay~~ 101 (259)
T d1v54c_ 84 FIISEVLFFTGFFWAFYH 101 (259)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 46677777754
No 8
>d1nb5i_ d.17.1.2 (I:) Cystatin A (stefin A) {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.04 E-value=1.9e+02 Score=19.04 Aligned_cols=16 Identities=38% Similarity=0.524 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHhh
Q psy11842 10 LQEKVDIVRSEMVEAR 25 (163)
Q Consensus 10 ~~~~~~~~~~~~~~a~ 25 (163)
+|+.+|.||+++.+-.
T Consensus 16 iq~I~d~Vk~~le~k~ 31 (98)
T d1nb5i_ 16 IQEIVDKVKPQLEEKT 31 (98)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc
Confidence 6999999999976543
No 9
>d1e7ua1 a.118.1.6 (A:525-725) Phoshoinositide 3-kinase (PI3K) helical domain {Pig (Sus scrofa) [TaxId: 9823]}
Probab=4.60 E-value=1.3e+02 Score=21.96 Aligned_cols=18 Identities=22% Similarity=0.279 Sum_probs=15.1
Q ss_pred hhhhHHHHHHHHHHHHHH
Q psy11842 4 EVLPRFLQEKVDIVRSEM 21 (163)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~ 21 (163)
|-|-.||+|+||.+|.|-
T Consensus 130 ~el~~yLpQLVQaLkye~ 147 (201)
T d1e7ua1 130 DDVLHYLLQLVQAVKFEP 147 (201)
T ss_dssp HHHHHHHHHHHHHGGGCS
T ss_pred HHHHHHHHHHHHHHhhcc
Confidence 557789999999999875
No 10
>d1szia_ a.24.23.1 (A:) Mannose-6-phosphate receptor binding protein 1 (Tip47), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.50 E-value=1.9e+02 Score=21.69 Aligned_cols=18 Identities=28% Similarity=0.438 Sum_probs=15.0
Q ss_pred hhhHHHHHHHHHHHHHHH
Q psy11842 5 VLPRFLQEKVDIVRSEMV 22 (163)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~ 22 (163)
-||+-+|++++.+|.-..
T Consensus 149 GLP~~iQdq~~~~r~~~~ 166 (226)
T d1szia_ 149 GLPSHVREQAQQARSQVN 166 (226)
T ss_dssp TSCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHH
Confidence 489999999999997653
Done!