RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11842
(163 letters)
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG;
2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Length = 680
Score = 30.4 bits (69), Expect = 0.29
Identities = 10/51 (19%), Positives = 18/51 (35%), Gaps = 10/51 (19%)
Query: 102 SLKYIMLAYNLFQTLFNAYIVSYIFSPGSFSYLKPMSLKYIMLAYNLFQTL 152
+L+ ++L+ N Q L SLK + L+ N +
Sbjct: 146 NLQELLLSNNKIQAL----------KSEELDIFANSSLKKLELSSNQIKEF 186
Score = 28.8 bits (65), Expect = 0.86
Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 12/51 (23%)
Query: 102 SLKYIMLAYNLFQTLFNAYIVSYIFSPGSFSYLKPMSLKYIMLAYNLFQTL 152
++ I L+YN + L SF+ + SL+ +ML + +
Sbjct: 431 NIFEIYLSYNKYLQLT----------RNSFALVP--SLQRLMLRRVALKNV 469
Score = 27.3 bits (61), Expect = 2.5
Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 10/51 (19%)
Query: 102 SLKYIMLAYNLFQTLFNAYIVSYIFSPGSFSYLKPMSLKYIMLAYNLFQTL 152
S++ + L+ + T S +F LK +L + L+YN +
Sbjct: 223 SIRNLSLSNSQLSTT----------SNTTFLGLKWTNLTMLDLSYNNLNVV 263
Score = 27.3 bits (61), Expect = 2.9
Identities = 9/51 (17%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 102 SLKYIMLAYNLFQTLFNAYIVSYIFSPGSFSYLKPMSLKYIMLAYNLFQTL 152
+++Y+ L + + + + I SF +LK L+++ + N +
Sbjct: 297 NVRYLNLKRSFTKQSISLASLPKI-DDFSFQWLK--CLEHLNMEDNDIPGI 344
Score = 26.9 bits (60), Expect = 3.9
Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 12/51 (23%)
Query: 102 SLKYIMLAYNLFQTLFNAYIVSYIFSPGSFSYLKPMSLKYIMLAYNLFQTL 152
LK + L +N L S +F++ +L + L N Q +
Sbjct: 74 MLKVLNLQHNELSQL----------SDKTFAFCT--NLTELHLMSNSIQKI 112
Score = 26.5 bits (59), Expect = 5.3
Identities = 9/51 (17%), Positives = 17/51 (33%), Gaps = 8/51 (15%)
Query: 102 SLKYIMLAYNLFQTLFNAYIVSYIFSPGSFSYLKPMSLKYIMLAYNLFQTL 152
+LKY+ L+ + + +F L L + L N +
Sbjct: 354 NLKYLSLSNSFTSLR--------TLTNETFVSLAHSPLHILNLTKNKISKI 396
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.6 bits (66), Expect = 0.55
Identities = 16/70 (22%), Positives = 22/70 (31%), Gaps = 22/70 (31%)
Query: 76 VIT--ILVLYLAFVL-----KIGPAYMQNRKPMSLKYIMLAYNLFQTLFNAYIVSYIFSP 128
V++ LY L K Q+R P S + + F F + SP
Sbjct: 378 VVSGPPQSLY-GLNLTLRKAKAPSGLDQSRIPFSERKLK-----FSNRFLP-----VASP 426
Query: 129 GSF--SYLKP 136
F L P
Sbjct: 427 --FHSHLLVP 434
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid
recognition, receptor immunity, lipid binding,
glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO
MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Length = 606
Score = 28.8 bits (65), Expect = 0.87
Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 10/51 (19%)
Query: 102 SLKYIMLAYNLFQTLFNAYIVSYIFSPGSFSYLKPMSLKYIMLAYNLFQTL 152
SL Y+ L+ N S+S L SL+++ L++N +
Sbjct: 351 SLSYLDLSRNALSFS----------GCCSYSDLGTNSLRHLDLSFNGAIIM 391
Score = 25.8 bits (57), Expect = 8.7
Identities = 8/54 (14%), Positives = 19/54 (35%), Gaps = 12/54 (22%)
Query: 102 SLKYIMLAYNLFQTLFNAYIVSYIFSPGSFSYLKPMSLKYIMLAYNLFQTLFNA 155
L+ + +++N L ++ L SL + ++N +T
Sbjct: 498 RLQLLNMSHNNLLFL----------DSSHYNQLY--SLSTLDCSFNRIETSKGI 539
Score = 25.8 bits (57), Expect = 9.1
Identities = 8/64 (12%), Positives = 24/64 (37%), Gaps = 13/64 (20%)
Query: 89 KIGPAYMQNRKPMSLKYIMLAYNLFQTLFNAYIVSYIFSPGSFSYLKPMSLKYIMLAYNL 148
G + SL+++ L++N + +F L+ L+++ ++
Sbjct: 364 FSGCCSYSDLGTNSLRHLDLSFNGAIIM-----------SANFMGLE--ELQHLDFQHST 410
Query: 149 FQTL 152
+ +
Sbjct: 411 LKRV 414
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto;
TLR2, PAM3CSK4, lipopeptide, innate immunity,
cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A
{Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A*
2z7x_A*
Length = 549
Score = 27.8 bits (62), Expect = 1.6
Identities = 9/52 (17%), Positives = 18/52 (34%), Gaps = 12/52 (23%)
Query: 101 MSLKYIMLAYNLFQTLFNAYIVSYIFSPGSFSYLKPMSLKYIMLAYNLFQTL 152
+K I + + + +LK SL+++ L+ NL
Sbjct: 310 EKVKRITVENSKVFLV----------PCSFSQHLK--SLEFLDLSENLMVEE 349
Score = 27.8 bits (62), Expect = 1.8
Identities = 10/51 (19%), Positives = 23/51 (45%), Gaps = 9/51 (17%)
Query: 102 SLKYIMLAYNLFQTLFNAYIVSYIFSPGSFSYLKPMSLKYIMLAYNLFQTL 152
SL+++ L+ NL Y+ + SL+ ++L+ N +++
Sbjct: 335 SLEFLDLSENLMVEE-------YLKNSACKGAWP--SLQTLVLSQNHLRSM 376
Score = 27.4 bits (61), Expect = 2.3
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 12/51 (23%)
Query: 102 SLKYIMLAYNLFQTLFNAYIVSYIFSPGSFSYLKPMSLKYIMLAYNLFQTL 152
SL+++ L+ N +L S F L SLKY+ L N +QTL
Sbjct: 75 SLEHLDLSDNHLSSL----------SSSWFGPLS--SLKYLNLMGNPYQTL 113
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat,
asymmetric homodimer, glycoprotein, immune system; HET:
NAG FUC; 26.00A {Homo sapiens}
Length = 844
Score = 27.1 bits (60), Expect = 3.4
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 12/53 (22%)
Query: 102 SLKYIMLAYNLFQTLFNAYIVSYIFSPGSFSYLKPMSLKYIMLAYNLFQTLFN 154
LK + LAYN + + +F L +L+ + L+YNL L++
Sbjct: 291 DLKVLNLAYNKINKI----------ADEAFYGLD--NLQVLNLSYNLLGELYS 331
Score = 26.3 bits (58), Expect = 5.6
Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 12/51 (23%)
Query: 102 SLKYIMLAYNLFQTLFNAYIVSYIFSPGSFSYLKPMSLKYIMLAYNLFQTL 152
+L+ + L+YNL L+ +F L + YI L N +
Sbjct: 315 NLQVLNLSYNLLGELY----------SSNFYGLP--KVAYIDLQKNHIAII 353
Score = 25.9 bits (57), Expect = 8.8
Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 11/51 (21%)
Query: 102 SLKYIMLAYNLFQTLFNAYIVSYIFSPGSFSYLKPMSLKYIMLAYNLFQTL 152
+L + L+ N ++ ++ SF L SLK I + N +
Sbjct: 124 ALTRLDLSKNQIRS---------LYLHPSFGKLN--SLKSIDFSSNQIFLV 163
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat,
glycoprotein, immune response, inflamma response, innate
immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO
MYR NAG GCS; 3.10A {Homo sapiens}
Length = 605
Score = 26.9 bits (60), Expect = 3.9
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 12/56 (21%)
Query: 102 SLKYIMLAYNLFQTLFNAYIVSYIFSPGSFSYLKPMSLKYIMLAYNLFQTLFNAYI 157
L ++L N Q+L + G+FS L SL+ ++ +L N I
Sbjct: 77 HLSTLILTGNPIQSL----------ALGAFSGLS--SLQKLVAVETNLASLENFPI 120
Score = 26.5 bits (59), Expect = 4.8
Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 12/51 (23%)
Query: 102 SLKYIMLAYNLFQTLFNAYIVSYIFSPGSFSYLKPMSLKYIMLAYNLFQTL 152
SL+ ++ +L +LK +LK + +A+NL Q+
Sbjct: 101 SLQKLVAVETNLASL----------ENFPIGHLK--TLKELNVAHNLIQSF 139
Score = 25.8 bits (57), Expect = 8.6
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 11/51 (21%)
Query: 102 SLKYIMLAYNLFQTLFNAYIVSYIFSPGSFSYLKPMSLKYIMLAYNLFQTL 152
+LK + +A+NL Q+ P FS L +L+++ L+ N Q++
Sbjct: 125 TLKELNVAHNLIQS---------FKLPEYFSNLT--NLEHLDLSSNKIQSI 164
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS,
immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Length = 570
Score = 26.6 bits (59), Expect = 5.0
Identities = 11/69 (15%), Positives = 26/69 (37%), Gaps = 13/69 (18%)
Query: 89 KIGPAYMQNRKPMSLKYIMLAYNLFQTLFNAYIVSYIFSPGSFSYLKPMSLKYIMLAYNL 148
G + SLKY+ L++N T+ +F L+ L+++ ++
Sbjct: 361 FKGCCSQSDFGTTSLKYLDLSFNGVITM-----------SSNFLGLE--QLEHLDFQHSN 407
Query: 149 FQTLFNAYI 157
+ + +
Sbjct: 408 LKQMSEFSV 416
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2
related L recognition, receptor, innate immunity,
glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus
musculus} PDB: 3b2d_A* 3rg1_A*
Length = 606
Score = 25.7 bits (57), Expect = 8.9
Identities = 7/56 (12%), Positives = 18/56 (32%), Gaps = 12/56 (21%)
Query: 102 SLKYIMLAYNLFQTLFNAYIVSYIFSPGSFSYLKPMSLKYIMLAYNLFQTLFNAYI 157
L ++L N + + + S K +LK++ ++ +
Sbjct: 82 RLDTLVLTANPLIFM----------AETALSGPK--ALKHLFFIQTGISSIDFIPL 125
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.330 0.142 0.421
Gapped
Lambda K H
0.267 0.0710 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,387,086
Number of extensions: 129471
Number of successful extensions: 300
Number of sequences better than 10.0: 1
Number of HSP's gapped: 271
Number of HSP's successfully gapped: 49
Length of query: 163
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 77
Effective length of database: 4,300,587
Effective search space: 331145199
Effective search space used: 331145199
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (24.2 bits)