RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11842
         (163 letters)



>d1pxfa_ b.40.4.4 (A:) Structure-specific tRNA-binding protein
          TRBP111 {Escherichia coli [TaxId: 562]}
          Length = 111

 Score = 23.7 bits (51), Expect = 7.0
 Identities = 4/27 (14%), Positives = 14/27 (51%)

Query: 12 EKVDIVRSEMVEAREYPKLGKVQFILV 38
           ++++   ++VE + +    K+  + V
Sbjct: 10 ARLEMRVGKIVEVKRHENADKLYIVQV 36


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.330    0.142    0.421 

Gapped
Lambda     K      H
   0.267   0.0590    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 576,742
Number of extensions: 24322
Number of successful extensions: 65
Number of sequences better than 10.0: 1
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 4
Length of query: 163
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 84
Effective length of database: 1,322,926
Effective search space: 111125784
Effective search space used: 111125784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 49 (23.0 bits)