RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11843
(325 letters)
>gnl|CDD|184516 PRK14115, gpmA, phosphoglyceromutase; Provisional.
Length = 247
Score = 175 bits (446), Expect = 2e-53
Identities = 78/143 (54%), Positives = 92/143 (64%), Gaps = 14/143 (9%)
Query: 173 VNEAEAAGVALAKAGFKFDVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLNERHYGG 232
V+EA+AAG L + G+ FDVA+TSVL RA TL +L + Q LPV KSWRLNERHYG
Sbjct: 32 VSEAKAAGKLLKEEGYTFDVAYTSVLKRAIRTLWIVLDELDQMWLPVEKSWRLNERHYGA 91
Query: 233 LTGLDKAATAAKYGEEQRVH--R---DT----IGLEDHAYYSNIVDDPRYASEPSKEEFP 283
L GL+KA TAAKYG+EQ V R D + +D Y + DPRYA P +EE P
Sbjct: 92 LQGLNKAETAAKYGDEQ-VKIWRRSYDVPPPALEKDDERYPGH---DPRYAKLP-EEELP 146
Query: 284 MFESLKLTIERTLPYWNNVIVPQ 306
+ ESLK TI R LPYWN I PQ
Sbjct: 147 LTESLKDTIARVLPYWNETIAPQ 169
Score = 55.3 bits (134), Expect = 6e-09
Identities = 17/30 (56%), Positives = 23/30 (76%)
Query: 4 YVIVMVRHGESEWNQKNLFCGWYDAQLSEK 33
+V++RHGES+WN++N F GW D LSEK
Sbjct: 1 TKLVLIRHGESQWNKENRFTGWTDVDLSEK 30
>gnl|CDD|213596 TIGR01258, pgm_1, phosphoglycerate mutase, BPG-dependent, family 1.
Most members of this family are phosphoglycerate mutase
(EC 5.4.2.1). This enzyme interconverts
2-phosphoglycerate and 3-phosphoglycerate. The enzyme is
transiently phosphorylated on an active site histidine
by 2,3-diphosphoglyerate, which is both substrate and
product. Some members of this family have are
phosphoglycerate mutase as a minor activity and act
primarily as a bisphoglycerate mutase, interconverting
2,3-diphosphoglycerate and 1,3-diphosphoglycerate (EC
5.4.2.4). This model is designated as a subfamily for
this reason. The second and third paralogs in S.
cerevisiae are somewhat divergent and apparently
inactive (see PUBMED:9544241) but are also part of this
subfamily phylogenetically.
Length = 245
Score = 159 bits (405), Expect = 2e-47
Identities = 72/142 (50%), Positives = 84/142 (59%), Gaps = 12/142 (8%)
Query: 173 VNEAEAAGVALAKAGFKFDVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLNERHYGG 232
EA+ AG L + G++FDVA+TS+L RA +TL L + Q +PV KSWRLNERHYG
Sbjct: 32 QQEAKRAGELLKEEGYEFDVAYTSLLKRAIHTLNIALDELDQLWIPVKKSWRLNERHYGA 91
Query: 233 LTGLDKAATAAKYGEEQ----RVHRDT----IGLEDHAYYSNIVDDPRYASEPSKEEFPM 284
L GL+KA TAAKYGEEQ R D I D N DPRYA K P+
Sbjct: 92 LQGLNKAETAAKYGEEQVNIWRRSFDVPPPPIDESDPRSPHN---DPRYAHLDPK-VLPL 147
Query: 285 FESLKLTIERTLPYWNNVIVPQ 306
ESLK TI R LPYWN+ I P
Sbjct: 148 TESLKDTIARVLPYWNDEIAPD 169
Score = 62.0 bits (151), Expect = 4e-11
Identities = 20/28 (71%), Positives = 23/28 (82%)
Query: 6 IVMVRHGESEWNQKNLFCGWYDAQLSEK 33
+V+VRHGESEWN NLF GW D +LSEK
Sbjct: 3 LVLVRHGESEWNALNLFTGWVDVKLSEK 30
>gnl|CDD|223661 COG0588, GpmA, Phosphoglycerate mutase 1 [Carbohydrate transport
and metabolism].
Length = 230
Score = 152 bits (385), Expect = 9e-45
Identities = 68/143 (47%), Positives = 84/143 (58%), Gaps = 14/143 (9%)
Query: 173 VNEAEAAGVALAKAGFKFDVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLNERHYGG 232
++EA+AAG L + G +FD+A+TSVL RA TL +L+ Q +PV KSWRLNERHYG
Sbjct: 33 ISEAKAAGKLLKEEGLEFDIAYTSVLKRAIKTLNIVLEESDQLWIPVIKSWRLNERHYGA 92
Query: 233 LTGLDKAATAAKYGEEQRVH---RD------TIGLEDHAYYSNIVDDPRYASEPSKEEFP 283
L GL+KA TAAKYGEEQ V R + +D D RYA P
Sbjct: 93 LQGLNKAETAAKYGEEQ-VLIWRRSYDIPPPKLEKDDERSPHR---DRRYAHLD-IGGLP 147
Query: 284 MFESLKLTIERTLPYWNNVIVPQ 306
+ ESLK T+ER LPYW + I P
Sbjct: 148 LTESLKDTVERVLPYWEDDIAPN 170
Score = 60.8 bits (148), Expect = 8e-11
Identities = 17/27 (62%), Positives = 23/27 (85%)
Query: 7 VMVRHGESEWNQKNLFCGWYDAQLSEK 33
V++RHG+SEWN++NLF GW D L+EK
Sbjct: 5 VLLRHGQSEWNKENLFTGWVDVDLTEK 31
>gnl|CDD|240280 PTZ00123, PTZ00123, phosphoglycerate mutase like-protein;
Provisional.
Length = 236
Score = 151 bits (384), Expect = 1e-44
Identities = 67/146 (45%), Positives = 85/146 (58%), Gaps = 10/146 (6%)
Query: 167 PSSLNSVNEAEAAGVALAKAGFKFDVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLN 226
P S V EA AG L + GF+FDV +TSVL RA T +L+ +GQ +PV KSWRLN
Sbjct: 14 PLSEKGVQEAREAGKLLKEKGFRFDVVYTSVLKRAIKTAWIVLEELGQLHVPVIKSWRLN 73
Query: 227 ERHYGGLTGLDKAATAAKYGEEQ-RVHRDTIG------LEDHAYYSNIVDDPRYASEPSK 279
ERHYG L GL+K+ TA K+GEEQ ++ R + + Y +DP Y P K
Sbjct: 74 ERHYGALQGLNKSETAEKHGEEQVKIWRRSYDIPPPPLEKSDERYPG--NDPVYKDIP-K 130
Query: 280 EEFPMFESLKLTIERTLPYWNNVIVP 305
+ P E LK T+ER LPYW + I P
Sbjct: 131 DALPNTECLKDTVERVLPYWEDHIAP 156
Score = 36.9 bits (86), Expect = 0.008
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 16 WNQKNLFCGWYDAQLSEKALC 36
WN++N F GW D LSEK +
Sbjct: 1 WNKENRFTGWTDVPLSEKGVQ 21
>gnl|CDD|184519 PRK14120, gpmA, phosphoglyceromutase; Provisional.
Length = 249
Score = 123 bits (310), Expect = 2e-33
Identities = 67/144 (46%), Positives = 79/144 (54%), Gaps = 12/144 (8%)
Query: 170 LNSVNEAEA--AGVALAKAGFKFDVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLNE 227
L EAEA G LA+AG DV +TS+L RA T L + +PV +SWRLNE
Sbjct: 31 LTEKGEAEAKRGGELLAEAGVLPDVVYTSLLRRAIRTANLALDAADRLWIPVRRSWRLNE 90
Query: 228 RHYGGLTGLDKAATAAKYGEEQ----RVHRDT--IGLEDHAYYSNIVDDPRYASEPSKEE 281
RHYG L G DKA T A+YGEEQ R DT +ED + YS +DPRYA
Sbjct: 91 RHYGALQGKDKAETKAEYGEEQFMLWRRSYDTPPPPIEDGSEYSQ-DNDPRYADLGVG-- 147
Query: 282 FPMFESLKLTIERTLPYWNNVIVP 305
P E LK + R LPYW + IVP
Sbjct: 148 -PRTECLKDVVARFLPYWEDDIVP 170
Score = 57.0 bits (138), Expect = 2e-09
Identities = 21/33 (63%), Positives = 25/33 (75%)
Query: 1 MAKYVIVMVRHGESEWNQKNLFCGWYDAQLSEK 33
M Y +V++RHGESEWN KNLF GW D L+EK
Sbjct: 2 MMTYTLVLLRHGESEWNAKNLFTGWVDVDLTEK 34
>gnl|CDD|172608 PRK14118, gpmA, phosphoglyceromutase; Provisional.
Length = 227
Score = 120 bits (301), Expect = 2e-32
Identities = 66/138 (47%), Positives = 87/138 (63%), Gaps = 6/138 (4%)
Query: 173 VNEAEAAGVALAKAGFKFDVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLNERHYGG 232
V EA+AAG L +AG++FD+A TSVLTRA T +L+ Q +P K+WRLNERHYG
Sbjct: 32 VEEAKAAGKKLKEAGYEFDIAFTSVLTRAIKTCNIVLEESNQLWIPQVKNWRLNERHYGA 91
Query: 233 LTGLDKAATAAKYGEEQ----RVHRDTI-GLEDHAYYSNIVDDPRYASEPSKEEFPMFES 287
L GLDK ATA +YG+EQ R DT+ D ++ +D RYA P + P E+
Sbjct: 92 LQGLDKKATAEQYGDEQVHIWRRSYDTLPPDLDPQDPNSAHNDRRYAHLP-ADVVPDAEN 150
Query: 288 LKLTIERTLPYWNNVIVP 305
LK+T+ER LP+W + I P
Sbjct: 151 LKVTLERVLPFWEDQIAP 168
Score = 48.4 bits (115), Expect = 1e-06
Identities = 17/30 (56%), Positives = 22/30 (73%)
Query: 6 IVMVRHGESEWNQKNLFCGWYDAQLSEKAL 35
+V +RHG SEWN KNLF GW D L+E+ +
Sbjct: 3 LVFIRHGFSEWNAKNLFTGWRDVNLTERGV 32
>gnl|CDD|172606 PRK14116, gpmA, phosphoglyceromutase; Provisional.
Length = 228
Score = 116 bits (291), Expect = 6e-31
Identities = 65/147 (44%), Positives = 85/147 (57%), Gaps = 8/147 (5%)
Query: 169 SLNSVNEAEAAGVALAKAGFKFDVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLNER 228
S V EA+ AG + +AG +FD A+TSVLTRA TL L+ Q +P K+WRLNER
Sbjct: 29 SEKGVEEAKKAGRLIKEAGLEFDQAYTSVLTRAIKTLHYALEESDQLWIPETKTWRLNER 88
Query: 229 HYGGLTGLDKAATAAKYGEEQ----RVHRDTI-GLEDHAYYSNIVDDPRYAS-EPSKEEF 282
HYG L GL+K TA KYG+EQ R D + L D + D RYA+ +P
Sbjct: 89 HYGALQGLNKKETAEKYGDEQVHIWRRSYDVLPPLLDADDEGSAAKDRRYANLDP--RII 146
Query: 283 PMFESLKLTIERTLPYWNNVIVPQYSD 309
P E+LK+T+ER +P+W + I P D
Sbjct: 147 PGGENLKVTLERVIPFWEDHIAPDLLD 173
Score = 49.5 bits (118), Expect = 5e-07
Identities = 20/35 (57%), Positives = 25/35 (71%), Gaps = 2/35 (5%)
Query: 1 MAKYVIVMVRHGESEWNQKNLFCGWYDAQLSEKAL 35
MAK +V++RHG+SEWN N F GW D LSEK +
Sbjct: 1 MAK--LVLIRHGQSEWNLSNQFTGWVDVDLSEKGV 33
>gnl|CDD|184517 PRK14117, gpmA, phosphoglyceromutase; Provisional.
Length = 230
Score = 111 bits (279), Expect = 3e-29
Identities = 64/149 (42%), Positives = 84/149 (56%), Gaps = 12/149 (8%)
Query: 169 SLNSVNEAEAAGVALAKAGFKFDVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLNER 228
S +A AG + +AG +FD+A TSVL RA T L+ Q +PV KSWRLNER
Sbjct: 29 SEKGTQQAIDAGKLIKEAGIEFDLAFTSVLKRAIKTTNLALEASDQLWVPVEKSWRLNER 88
Query: 229 HYGGLTGLDKAATAAKYGEEQ----RVHRDTIGLE---DHAYYSNIVDDPRYAS-EPSKE 280
HYGGLTG +KA A ++G+EQ R D + D Y ++ D RYAS + S
Sbjct: 89 HYGGLTGKNKAEAAEQFGDEQVHIWRRSYDVLPPAMAKDDEYSAH--TDRRYASLDDSV- 145
Query: 281 EFPMFESLKLTIERTLPYWNNVIVPQYSD 309
P E+LK+T+ER LP+W + I P D
Sbjct: 146 -IPDAENLKVTLERALPFWEDKIAPALKD 173
Score = 48.1 bits (114), Expect = 1e-06
Identities = 19/28 (67%), Positives = 21/28 (75%)
Query: 6 IVMVRHGESEWNQKNLFCGWYDAQLSEK 33
+V RHGESEWN+ NLF GW D LSEK
Sbjct: 4 LVFARHGESEWNKANLFTGWADVDLSEK 31
>gnl|CDD|184518 PRK14119, gpmA, phosphoglyceromutase; Provisional.
Length = 228
Score = 111 bits (279), Expect = 3e-29
Identities = 60/147 (40%), Positives = 79/147 (53%), Gaps = 8/147 (5%)
Query: 169 SLNSVNEAEAAGVALAKAGFKFDVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLNER 228
S +NEA AG + + DVA TS+LTRA +T IL Q+ +PV+KSWRLNER
Sbjct: 29 SEQGINEATRAGEKVRENNIAIDVAFTSLLTRALDTTHYILTESKQQWIPVYKSWRLNER 88
Query: 229 HYGGLTGLDKAATAAKYGEEQRVH--RDTIGL----EDHAYYSNIVDDPRYASEPSKEEF 282
HYGGL GL+K ++GEEQ VH R + + E + D RY + K
Sbjct: 89 HYGGLQGLNKDDARKEFGEEQ-VHIWRRSYDVKPPAETEEQREAYLADRRY-NHLDKRMM 146
Query: 283 PMFESLKLTIERTLPYWNNVIVPQYSD 309
P ESLK T+ R +P+W + I D
Sbjct: 147 PYSESLKDTLVRVIPFWTDHISQYLLD 173
Score = 48.3 bits (115), Expect = 1e-06
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 6 IVMVRHGESEWNQKNLFCGWYDAQLSEK 33
+++ RHG+SEWN KNLF GW D LSE+
Sbjct: 4 LILCRHGQSEWNAKNLFTGWEDVNLSEQ 31
>gnl|CDD|167205 PRK01295, PRK01295, phosphoglyceromutase; Provisional.
Length = 206
Score = 110 bits (278), Expect = 3e-29
Identities = 58/136 (42%), Positives = 73/136 (53%), Gaps = 25/136 (18%)
Query: 173 VNEAEAAGVALAKAGFKFDVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLNERHYGG 232
V EA+AAG L AG KFD+A TS L+RAQ+T + IL+ +GQ L + LNER YG
Sbjct: 34 VAEAKAAGRKLKAAGLKFDIAFTSALSRAQHTCQLILEELGQPGLETIRDQALNERDYGD 93
Query: 233 LTGLDKAATAAKYGEEQRVH--RDTIGLEDHAYYSNIVDDPRYASEPSKEEFPMFESLKL 290
L+GL+K AK+GEEQ VH R + Y P P ESLK
Sbjct: 94 LSGLNKDDARAKWGEEQ-VHIWRRS-----------------YDVPP-----PGGESLKD 130
Query: 291 TIERTLPYWNNVIVPQ 306
T R LPY+ I+P+
Sbjct: 131 TGARVLPYYLQEILPR 146
Score = 53.2 bits (128), Expect = 2e-08
Identities = 18/28 (64%), Positives = 23/28 (82%)
Query: 6 IVMVRHGESEWNQKNLFCGWYDAQLSEK 33
+V+VRHG+SEWN KNLF GW D L+E+
Sbjct: 5 LVLVRHGQSEWNLKNLFTGWRDPDLTEQ 32
>gnl|CDD|220647 pfam10242, L_HGMIC_fpl, Lipoma HMGIC fusion partner-like protein.
This is a group of proteins expressed from a series of
genes referred to as Lipoma HGMIC fusion partner-like.
The proteins carry four highly conserved transmembrane
domains in this entry. In certain instances, eg in
LHFPL5, mutations cause deafness in humans and
hypospadias, and LHFPL1 is transcribed in six liver
tumour cell lines.
Length = 181
Score = 100 bits (251), Expect = 1e-25
Identities = 37/76 (48%), Positives = 52/76 (68%), Gaps = 3/76 (3%)
Query: 23 CGWYDAQLSEKALCMIASVVIYPLGWESAKAQEICGPTASRYNLGQCDIKWAYILAIIGC 82
CGW QL LC++ ++YPLGW+S + + +CGP + +Y+LG C I WAY LAIIG
Sbjct: 109 CGW--LQLV-AGLCLMLGCMLYPLGWDSPEVRRLCGPESGKYSLGLCSIGWAYYLAIIGI 165
Query: 83 LDVIVLAILAFILATR 98
LD ++L LAF+L+ R
Sbjct: 166 LDGLLLTFLAFVLSLR 181
>gnl|CDD|214859 smart00855, PGAM, Phosphoglycerate mutase family. Phosphoglycerate
mutase (PGAM) and bisphosphoglycerate mutase (BPGM) are
structurally related enzymes that catalyse reactions
involving the transfer of phospho groups between the
three carbon atoms of phosphoglycerate... Both enzymes
can catalyse three different reactions with different
specificities, the isomerization of 2-phosphoglycerate
(2-PGA) to 3-phosphoglycerate (3-PGA) with
2,3-diphosphoglycerate (2,3-DPG) as the primer of the
reaction, the synthesis of 2,3-DPG from 1,3-DPG with
3-PGA as a primer and the degradation of 2,3-DPG to
3-PGA (phosphatase activity). In mammals, PGAM is a
dimeric protein with two isoforms, the M (muscle) and B
(brain) forms. In yeast, PGAM is a tetrameric protein.
Length = 158
Score = 72.5 bits (178), Expect = 2e-15
Identities = 39/142 (27%), Positives = 55/142 (38%), Gaps = 27/142 (19%)
Query: 175 EAEAAGVALAKAG-FKFDVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLNERHYGGL 233
+AEA G LA +FDV ++S L RA+ T +A+ +G L ER +G
Sbjct: 33 QAEALGRLLASLLLPRFDVVYSSPLKRARQTAEALAIALGL--------PGLRERDFGAW 84
Query: 234 TGLDKAATAAKYGEEQRVHRDTIGLEDHAYYSNIVDDPRYASEPSKEEFPMFESLKLTIE 293
GL AAKY EE + R +P+ P ESL +E
Sbjct: 85 EGLTWDEIAAKYPEEY------------------LAAWRDPYDPAPPAPPGGESLADLVE 126
Query: 294 RTLPYWNNVIVPQYSDETCYLA 315
R P + +I + L
Sbjct: 127 RVEPALDELIATADASGQNVLI 148
Score = 49.4 bits (118), Expect = 2e-07
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 6 IVMVRHGESEWNQKNLFCGWYDAQLSEK 33
+ ++RHGE+EWN++ G D L+E
Sbjct: 2 LYLIRHGETEWNREGRLYGDTDVPLTEL 29
>gnl|CDD|234902 PRK01112, PRK01112, phosphoglyceromutase; Provisional.
Length = 228
Score = 70.1 bits (172), Expect = 4e-14
Identities = 51/170 (30%), Positives = 68/170 (40%), Gaps = 57/170 (33%)
Query: 167 PSSLNSVNEAEAAGVALAKAGFKFDVAHTSVLTRAQNTLKAIL----------------- 209
P S + EA AAG + D TS L R+ T A+L
Sbjct: 27 PLSQQGIAEAIAAGEKIKD--LPIDCIFTSTLVRSLMT--ALLAMTNHSSGKIPYIVHEE 82
Query: 210 -----------KGIGQEDLPVHKSWRLNERHYGGLTGLDKAATAAKYGEEQRVH--RDTI 256
++ +P+ +S LNER YG L G +KA TA K+GEEQ V R +
Sbjct: 83 DDKKWMSRIYSDEEPEQMIPLFQSSALNERMYGELQGKNKAETAEKFGEEQ-VKLWRRS- 140
Query: 257 GLEDHAYYSNIVDDPRYASEPSKEEFPMFESLKLTIERTLPYWNNVIVPQ 306
Y + P P ESL+ T +RTLPY+ N I+P
Sbjct: 141 ----------------YKTAP-----PQGESLEDTGQRTLPYFQNRILPH 169
Score = 52.0 bits (125), Expect = 6e-08
Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 4/48 (8%)
Query: 1 MAKYVIVMVRHGESEWNQKNLFCGWYDAQLSEK--ALCMIASVVIYPL 46
MA ++++RHG+S WN KNLF GW D LS++ A + A I L
Sbjct: 1 MAL--LILLRHGQSVWNAKNLFTGWVDIPLSQQGIAEAIAAGEKIKDL 46
>gnl|CDD|215845 pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch
1). The histidine phosphatase superfamily is so named
because catalysis centres on a conserved His residue
that is transiently phosphorylated during the catalytic
cycle. Other conserved residues contribute to a
'phosphate pocket' and interact with the phospho group
of substrate before, during and after its transfer to
the His residue. Structure and sequence analyses show
that different families contribute different additional
residues to the 'phosphate pocket' and, more
surprisingly, differ in the position, in sequence and in
three dimensions, of a catalytically essential acidic
residue. The superfamily may be divided into two main
branches. The larger branch 1 contains a wide variety of
catalytic functions, the best known being fructose
2,6-bisphosphatase (found in a bifunctional protein with
2-phosphofructokinase) and cofactor-dependent
phosphoglycerate mutase. The latter is an unusual
example of a mutase activity in the superfamily: the
vast majority of members appear to be phosphatases. The
bacterial regulatory protein phosphatase SixA is also in
branch 1 and has a minimal, and possible ancestral-like
structure, lacking the large domain insertions that
contribute to binding of small molecules in branch 1
members.
Length = 154
Score = 65.6 bits (160), Expect = 4e-13
Identities = 32/145 (22%), Positives = 52/145 (35%), Gaps = 25/145 (17%)
Query: 167 PSSLNSVNEAEAAGVALAKAGFKFDVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLN 226
S L + +A + G FD ++S L RA T + + + +G LP+ RL
Sbjct: 22 DSPLTELGREQARALGKRLKGIPFDRIYSSPLLRAIQTAEILAEALG---LPIIVDPRLR 78
Query: 227 ERHYGGLTGLDKAATAAKYGEEQRVHRDTIGLEDHAYYSNIVDDPRYASEPSKEEFPMFE 286
ER +G GL A++ EE R + +P+ P E
Sbjct: 79 ERDFGDWEGLTFDEIKAEFPEELR---------------------AWLEDPADFRPPGGE 117
Query: 287 SLKLTIERTLPYWNNVIVPQYSDET 311
SL ER ++ ++
Sbjct: 118 SLADVYERVEAALEE-LLAKHPGGN 141
Score = 42.1 bits (99), Expect = 7e-05
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 6 IVMVRHGESEWNQKNLFCGWYDAQLSEK 33
+ +VRHGE+EWN + G D+ L+E
Sbjct: 2 LYLVRHGETEWNVER-LQGDTDSPLTEL 28
>gnl|CDD|132718 cd07067, HP_PGM_like, Histidine phosphatase domain found in
phosphoglycerate mutases and related proteins, mostly
phosphatases; contains a His residue which is
phosphorylated during the reaction. Subgroup of the
catalytic domain of a functionally diverse set of
proteins, most of which are phosphatases. The conserved
catalytic core of this domain contains a His residue
which is phosphorylated in the reaction. This subgroup
contains cofactor-dependent and cofactor-independent
phosphoglycerate mutases (dPGM, and BPGM respectively),
fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, and
related proteins. Functions include roles in metabolism,
signaling, or regulation, for example, F26BPase affects
glycolysis and gluconeogenesis through controlling the
concentration of F26BP; BPGM controls the concentration
of 2,3-BPG (the main allosteric effector of hemoglobin
in human blood cells); human Sts-1 is a T-cell
regulator; Escherichia coli Six A participates in the
ArcB-dependent His-to-Asp phosphorelay signaling system.
Deficiency and mutation in many of the human members
result in disease, for example erythrocyte BPGM
deficiency is a disease associated with a decrease in
the concentration of 2,3-BPG.
Length = 153
Score = 62.3 bits (152), Expect = 6e-12
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 173 VNEAEAAGVALAKAGFKFDVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLNE 227
+A A G L + G KFD ++S L RA T + IL+ + LPV RL E
Sbjct: 31 REQARALGKRLKELGIKFDRIYSSPLKRAIQTAEIILEEL--PGLPVEVDPRLRE 83
Score = 51.2 bits (123), Expect = 4e-08
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 6 IVMVRHGESEWNQKNLFCGWYDAQLSEK 33
+ +VRHGESEWN + F GW D L+EK
Sbjct: 2 LYLVRHGESEWNAEGRFQGWTDVPLTEK 29
>gnl|CDD|132716 cd07040, HP, Histidine phosphatase domain found in a functionally
diverse set of proteins, mostly phosphatases; contains a
His residue which is phosphorylated during the reaction.
Catalytic domain of a functionally diverse set of
proteins, most of which are phosphatases. The conserved
catalytic core of this domain contains a His residue
which is phosphorylated in the reaction. This set of
proteins includes cofactor-dependent and
cofactor-independent phosphoglycerate mutases (dPGM, and
BPGM respectively), fructose-2,6-bisphosphatase
(F26BP)ase, Sts-1, SixA, histidine acid phosphatases,
phytases, and related proteins. Functions include roles
in metabolism, signaling, or regulation, for example
F26BPase affects glycolysis and gluconeogenesis through
controlling the concentration of F26BP; BPGM controls
the concentration of 2,3-BPG (the main allosteric
effector of hemoglobin in human blood cells); human
Sts-1 is a T-cell regulator; Escherichia coli Six A
participates in the ArcB-dependent His-to-Asp
phosphorelay signaling system; phytases scavenge
phosphate from extracellular sources. Deficiency and
mutation in many of the human members result in disease,
for example erythrocyte BPGM deficiency is a disease
associated with a decrease in the concentration of
2,3-BPG. Clinical applications include the use of
prostatic acid phosphatase (PAP) as a serum marker for
prostate cancer. Agricultural applications include the
addition of phytases to animal feed.
Length = 153
Score = 54.0 bits (130), Expect = 5e-09
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 173 VNEAEAAGVALAKAGFKFDVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWR 224
+A G AL + KFD ++S L RA T + IL+G+ + LPV R
Sbjct: 31 RQQARELGKALRERYIKFDRIYSSPLKRAIQTAEIILEGLFE-GLPVEVDPR 81
Score = 51.6 bits (124), Expect = 4e-08
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 5 VIVMVRHGESEWNQKNLFCGWYDAQLSEK 33
V+ +VRHGE E N + F GW D L+EK
Sbjct: 1 VLYLVRHGEREPNAEGRFTGWGDGPLTEK 29
>gnl|CDD|184966 PRK15004, PRK15004, alpha-ribazole phosphatase; Provisional.
Length = 199
Score = 50.8 bits (122), Expect = 1e-07
Identities = 32/113 (28%), Positives = 46/113 (40%), Gaps = 20/113 (17%)
Query: 173 VNEAEAAGVALAKAGFKFDVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLNERHYGG 232
+ +A+ L FD+ S L RAQ+T + +L LPVH LNE +G
Sbjct: 32 IEQAQNLHTLLR--DVPFDLVLCSELERAQHTARLVLSD---RQLPVHIIPELNEMFFGD 86
Query: 233 LTGLDKAATAAKYGEEQRVHRDTIGLEDHAYYSNIVDDPRYASEPSKEEFPMF 285
E R HRD + ED Y+ +D ++A + E F F
Sbjct: 87 W--------------EMRHHRD-LMQEDAENYAAWCNDWQHAIPTNGEGFQAF 124
Score = 31.9 bits (73), Expect = 0.31
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 8 MVRHGESEWNQKNLFCGWYDAQLSEKAL 35
+VRHGE++ N L+ G L+ + +
Sbjct: 5 LVRHGETQANVDGLYSGHAPTPLTARGI 32
>gnl|CDD|223483 COG0406, phoE, Broad specificity phosphatase PhoE and related
phosphatases [General function prediction only].
Length = 208
Score = 49.0 bits (117), Expect = 5e-07
Identities = 33/133 (24%), Positives = 49/133 (36%), Gaps = 22/133 (16%)
Query: 176 AEAAGVALAKAGFKFDVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLNERHYGGLTG 235
AEA LA FD ++S L RAQ T + + + +G LP+ RL E +G G
Sbjct: 37 AEALAERLAARDIGFDAIYSSPLKRAQQTAEPLAEELG---LPLEVDDRLREIDFGDWEG 93
Query: 236 LDKAATAAKYGEEQRVHRDTIGLEDHAYYSNIVDDPRYASEPSKEEFPMF----ESLKLT 291
L D + E + + DP A P E +
Sbjct: 94 L---------------TIDELAEEPPEELAAWLADPYLAPPPGGESLADVSKRVVAALAE 138
Query: 292 IERTLPYWNNVIV 304
+ R+ P N ++V
Sbjct: 139 LLRSPPGNNVLVV 151
Score = 42.5 bits (100), Expect = 9e-05
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 6 IVMVRHGESEWNQKNLFCGWYDAQLSEK 33
+ +VRHGE+EWN + GW D+ L+E+
Sbjct: 5 LYLVRHGETEWNVEGRLQGWTDSPLTEE 32
>gnl|CDD|234131 TIGR03162, ribazole_cobC, alpha-ribazole phosphatase. Members of
this protein family include the known CobC protein of
Salmonella and Eschichia coli species, and homologous
proteins found in cobalamin biosynthesis regions in
other bacteria. This protein is alpha-ribazole
phosphatase (EC 3.1.3.73) and, like many phosphatases,
can be closely related in sequence to other phosphatases
with different functions. Close homologs excluded from
this model include proteins with duplications, so this
model is built in -g mode to suppress hits to those
proteins [Biosynthesis of cofactors, prosthetic groups,
and carriers, Heme, porphyrin, and cobalamin].
Length = 177
Score = 41.1 bits (97), Expect = 2e-04
Identities = 28/137 (20%), Positives = 46/137 (33%), Gaps = 25/137 (18%)
Query: 170 LNSVNEAEAAGVALAKAGFKFDVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLNERH 229
L E +AA + A FD ++S L+R + + + + LP+ K RL E
Sbjct: 24 LAESGEEQAAALREKLADVPFDAVYSSPLSRCRELAEILA---ERRGLPIIKDDRLREMD 80
Query: 230 YGGLTGLDKAATAAKYGEEQRVHRDTIGLEDHAYYSNIVDDPRYASEPSKEEFPMFESLK 289
+G G D I E + D ++A P E F F
Sbjct: 81 FGDWEGR---------------SWDEIP-EAYPELDAWAADWQHARPPGGESFADFY--- 121
Query: 290 LTIERTLPYWNNVIVPQ 306
+R + ++
Sbjct: 122 ---QRVSEFLEELLKAH 135
Score = 28.0 bits (63), Expect = 4.8
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 6 IVMVRHGESEWNQKNLFCGWYDAQLSEK 33
+ ++RHGE++ N + G D L+E
Sbjct: 1 LYLIRHGETDVNAGLCY-GQTDVPLAES 27
>gnl|CDD|222017 pfam13273, DUF4064, Protein of unknown function (DUF4064).
Length = 96
Score = 32.6 bits (75), Expect = 0.060
Identities = 15/69 (21%), Positives = 24/69 (34%), Gaps = 4/69 (5%)
Query: 34 ALCMIASVVIYPLGWESAKAQEICGPTASRYNLGQCDIKWAYILAIIGCLDVIVLAILAF 93
L +++I +G K E + + I AII +L I+
Sbjct: 17 ILFGFFALLIGIMGTAEFKKNEQNSMVETILDALSTLGTGLGIGAIILS----ILGIIGS 72
Query: 94 ILATRHIKL 102
IL + KL
Sbjct: 73 ILVKKKPKL 81
>gnl|CDD|224973 COG2062, SixA, Phosphohistidine phosphatase SixA [Signal
transduction mechanisms].
Length = 163
Score = 33.4 bits (77), Expect = 0.079
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 175 EAEAAGVALAKAGFKFDVAHTSVLTRAQNTLKAILKGIGQE 215
EAE LA G + D+ S RA+ T + + + +G++
Sbjct: 33 EAELVAAWLAGQGVEPDLVLVSPAVRARQTAEIVAEHLGEK 73
>gnl|CDD|163560 TIGR03848, MSMEG_4193, probable phosphomutase, MSMEG_4193 family.
A three-gene system broadly conserved among the
Actinobacteria includes MSMEG_4193 and homologs, a
subgroup among the larger phosphoglycerate mutase family
protein (pfam00300). Another member of the trio is a
probable kinase, related to phosphatidylinositol
kinases; that context supports the hypothesis that this
protein acts as a phosphomutase.
Length = 204
Score = 33.1 bits (76), Expect = 0.13
Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 3/67 (4%)
Query: 169 SLNSVNEAEAAGVALAKAGFKFDVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLNER 228
L+ +AA +A A +S L R + T + I + G LP RL E
Sbjct: 26 DLDERGREQAAALAERLADLPIAAIVSSPLERCRETAEPIAEARG---LPPRVDERLGEC 82
Query: 229 HYGGLTG 235
YG TG
Sbjct: 83 DYGDWTG 89
>gnl|CDD|131724 TIGR02677, TIGR02677, TIGR02677 family protein. Members of this
protein belong to a conserved gene four-gene
neighborhood found sporadically in a phylogenetically
broad range of bacteria: Nocardia farcinica,
Symbiobacterium thermophilum, and Streptomyces
avermitilis (Actinobacteria), Geobacillus kaustophilus
(Firmicutes), Azoarcus sp. EbN1 and Ralstonia
solanacearum (Betaproteobacteria) [Hypothetical
proteins, Conserved].
Length = 494
Score = 32.1 bits (73), Expect = 0.35
Identities = 25/108 (23%), Positives = 40/108 (37%), Gaps = 13/108 (12%)
Query: 138 QGVHEQ-DRFSEFSNRTANSKSSRYARPE--------YPSSLNSVNEAEAAGVALAKAGF 188
+ + D+ ++ N TA ++SR E Y S AEAA L +A
Sbjct: 51 TELQQALDQLVKWGNLTAIPETSRVRTIEEFRRKRFLYQLSRIGE-AAEAALRTLEQALG 109
Query: 189 KFDVAHTSVLTRAQNTLKAILKGIGQ---EDLPVHKSWRLNERHYGGL 233
T+ L L+ +L I Q + VH++ R + L
Sbjct: 110 SRGALQTAALDDIVQRLRELLALIDQPRPDAREVHRTLRELYGSFESL 157
>gnl|CDD|111779 pfam02929, Bgal_small_N, Beta galactosidase small chain. This
domain comprises the small chain of dimeric
beta-galactosidases EC:3.2.1.23. This domain is also
found in single chain beta-galactosidase.
Length = 274
Score = 31.1 bits (71), Expect = 0.60
Identities = 26/104 (25%), Positives = 34/104 (32%), Gaps = 21/104 (20%)
Query: 135 LMPQ--GVHEQDRFSEFSNRTANSKSSRYARPEYPSSLNSVNEAEAAGVALAKAGFKFDV 192
L PQ G H R+ S+ S + +S S E E A
Sbjct: 177 LFPQENGNHTDTRWLAISDGGGGLLVSGDPPFAFSASPYSQEELEEA------------- 223
Query: 193 AHTSVLTRAQNT---LKAILKGIGQED---LPVHKSWRLNERHY 230
H L T L G+G +D VH +RL+ R Y
Sbjct: 224 THAHELPEEDRTTLNLDGAQMGVGGDDSWGPSVHPEYRLSARDY 267
>gnl|CDD|179583 PRK03482, PRK03482, phosphoglycerate mutase; Provisional.
Length = 215
Score = 30.9 bits (70), Expect = 0.74
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 8 MVRHGESEWNQKNLFCGWYDAQLSEK 33
+VRHGE++WN + G D+ L+ K
Sbjct: 6 LVRHGETQWNAERRIQGQSDSPLTAK 31
>gnl|CDD|233073 TIGR00653, GlnA, glutamine synthetase, type I. Alternate name:
glutamate--ammonia ligase. This model represents the
dodecameric form, which can be subdivided into 1-alpha
and 1-beta forms. The phylogeny of the 1-alpha and
1-beta forms appears polyphyletic. E. coli,
Synechocystis PCC6803, Aquifex aeolicus, and the
crenarcheon Sulfolobus acidocaldarius have form 1-beta,
while Bacillus subtilis, Thermotoga maritima, and
various euryarchaea has form 1-alpha. The 1-beta
dodecamer from the crenarcheon Sulfolobus acidocaldarius
differs from that in E. coli in that it is not regulated
by adenylylation [Amino acid biosynthesis, Glutamate
family].
Length = 459
Score = 29.6 bits (67), Expect = 2.3
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 8/53 (15%)
Query: 14 SEW-NQKNLFCGWYDAQLSEKALCMIASVVIYPLGWESAKA-QEICGPTASRY 64
S W + +NLF G A LSE AL I ++ + AKA PT + Y
Sbjct: 265 SLWKDGENLFAGEEYAGLSETALYYIGGIL------KHAKALAAFTNPTVNSY 311
>gnl|CDD|129351 TIGR00249, sixA, phosphohistidine phosphatase SixA. [Regulatory
functions, Protein interactions].
Length = 152
Score = 28.3 bits (63), Expect = 3.3
Identities = 9/52 (17%), Positives = 18/52 (34%)
Query: 164 PEYPSSLNSVNEAEAAGVALAKAGFKFDVAHTSVLTRAQNTLKAILKGIGQE 215
P + N +E+ L G + + S RA+ T + + +
Sbjct: 19 SVRPLTTNGCDESRLVAQWLKGQGVEIERILVSPFVRAEQTAEIVGDCLNLP 70
>gnl|CDD|192545 pfam10348, DUF2427, Domain of unknown function (DUF2427). This is
the N-terminal region of a family of proteins conserved
in fungi. Several members are annotated as being Ftp1
but this could not be confirmed. The function is not
known.
Length = 105
Score = 26.9 bits (60), Expect = 6.2
Identities = 19/83 (22%), Positives = 28/83 (33%), Gaps = 23/83 (27%)
Query: 34 ALCMIASVVIYPLGWESAKAQEICGPTASRYNLGQCDIKWAYILAIIGCLDVIVLAILAF 93
L IA + P+ LG +W + I+ LA+L
Sbjct: 23 ILMTIAWFFVLPIA----------------LVLGNARSRWHLPVQIVFL----ALAVLGL 62
Query: 94 ILATRHIKLQPEPLYGEINNAYG 116
+L H P+ LY NNA+
Sbjct: 63 LLGHIHNGRTPD-LYP--NNAHH 82
>gnl|CDD|172065 PRK13463, PRK13463, phosphatase PhoE; Provisional.
Length = 203
Score = 27.7 bits (61), Expect = 6.6
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 3 KYVIVMVRHGESEWNQKNLFCGWYDAQLSEKAL 35
K + + RHGE+EWN G ++ L+E +
Sbjct: 2 KTTVYVTRHGETEWNVAKRMQGRKNSALTENGI 34
>gnl|CDD|129711 TIGR00624, tag, DNA-3-methyladenine glycosylase I. All proteins in
this family are alkylation DNA glycosylases that
function in base excision repair This family is based on
the phylogenomic analysis of JA Eisen (1999, Ph.D.
Thesis, Stanford University) [DNA metabolism, DNA
replication, recombination, and repair].
Length = 179
Score = 27.5 bits (61), Expect = 7.9
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 6/52 (11%)
Query: 142 EQDRFSEFSNRTANSK---SSRYARPEYPSSLNSVNEAEAAGVALAKAGFKF 190
EQ+ EF N + R E PSS E++A L K GF+F
Sbjct: 105 EQNDLVEFLWSFVNHQPQPRQRPTDSEIPSS---TPESKAMSKELKKRGFRF 153
>gnl|CDD|226626 COG4146, COG4146, Predicted symporter [General function prediction
only].
Length = 571
Score = 27.9 bits (62), Expect = 8.3
Identities = 8/27 (29%), Positives = 20/27 (74%)
Query: 68 QCDIKWAYILAIIGCLDVIVLAILAFI 94
+ D+ + Y+LA + C++V+V+ ++ F+
Sbjct: 455 KFDVNFLYVLACLFCINVVVMLVIGFL 481
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.132 0.401
Gapped
Lambda K H
0.267 0.0657 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,213,203
Number of extensions: 1514731
Number of successful extensions: 1288
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1265
Number of HSP's successfully gapped: 54
Length of query: 325
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 228
Effective length of database: 6,635,264
Effective search space: 1512840192
Effective search space used: 1512840192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.7 bits)