RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11843
(325 letters)
>d1e58a_ c.60.1.1 (A:) Phosphoglycerate mutase {Escherichia coli
[TaxId: 562]}
Length = 247
Score = 78.8 bits (193), Expect = 1e-17
Identities = 66/140 (47%), Positives = 85/140 (60%), Gaps = 8/140 (5%)
Query: 173 VNEAEAAGVALAKAGFKFDVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLNERHYGG 232
V+EA+AAG L + G+ FD A+TSVL RA +TL +L + Q LPV KSW+LNERHYG
Sbjct: 34 VSEAKAAGKLLKEEGYSFDFAYTSVLKRAIHTLWNVLDELDQAWLPVEKSWKLNERHYGA 93
Query: 233 LTGLDKAATAAKYGEEQRVHRDTIGLEDHAYYSNIVDDPRYAS------EPSKEEFPMFE 286
L GL+KA TA KYG+EQ DD RY + S++E P+ E
Sbjct: 94 LQGLNKAETAEKYGDEQVKQWRRG--FAVTPPELTKDDERYPGHDPRYAKLSEKELPLTE 151
Query: 287 SLKLTIERTLPYWNNVIVPQ 306
SL LTI+R +PYWN I+P+
Sbjct: 152 SLALTIDRVIPYWNETILPR 171
Score = 52.6 bits (125), Expect = 1e-08
Identities = 19/28 (67%), Positives = 24/28 (85%)
Query: 6 IVMVRHGESEWNQKNLFCGWYDAQLSEK 33
+V+VRHGES+WN++N F GWYD LSEK
Sbjct: 5 LVLVRHGESQWNKENRFTGWYDVDLSEK 32
>d2hhja1 c.60.1.1 (A:3-250) Phosphoglycerate mutase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 248
Score = 61.2 bits (147), Expect = 1e-11
Identities = 62/161 (38%), Positives = 83/161 (51%), Gaps = 8/161 (4%)
Query: 173 VNEAEAAGVALAKAGFKFDVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLNERHYGG 232
+ EA G L F+FD+ TSVL R+ +T IL+ +GQE +PV SWRLNERHYG
Sbjct: 33 MEEARNCGKQLKALNFEFDLVFTSVLNRSIHTAWLILEELGQEWVPVESSWRLNERHYGA 92
Query: 233 LTGLDKAATAAKYGEEQRV-------HRDTIGLEDHAYYSNIVDDPRY-ASEPSKEEFPM 284
L GL++ A +GEEQ E H YY I +D RY + ++ P
Sbjct: 93 LIGLNREQMALNHGEEQVRLWRRSYNVTPPPIEESHPYYQEIYNDRRYKVCDVPLDQLPR 152
Query: 285 FESLKLTIERTLPYWNNVIVPQYSDETCYLATVTWNKNKKV 325
ESLK +ER LPYWN I P+ L + N ++ +
Sbjct: 153 SESLKDVLERLLPYWNERIAPEVLRGKTILISAHGNSSRAL 193
Score = 55.8 bits (133), Expect = 1e-09
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 3 KYVIVMVRHGESEWNQKNLFCGWYDAQLSEK 33
KY ++M+RHGE WN++N FC W D +L+ +
Sbjct: 1 KYKLIMLRHGEGAWNKENRFCSWVDQKLNSE 31
>d1xq9a_ c.60.1.1 (A:) Phosphoglycerate mutase {Plasmodium
falciparum [TaxId: 5833]}
Length = 241
Score = 58.1 bits (139), Expect = 2e-10
Identities = 19/33 (57%), Positives = 24/33 (72%)
Query: 1 MAKYVIVMVRHGESEWNQKNLFCGWYDAQLSEK 33
M Y +V++RHGES WN++N F GW D LSEK
Sbjct: 1 MTTYTLVLLRHGESTWNKENKFTGWTDVPLSEK 33
Score = 55.7 bits (133), Expect = 1e-09
Identities = 61/154 (39%), Positives = 75/154 (48%), Gaps = 8/154 (5%)
Query: 173 VNEAEAAGVALAKAGFKFDVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLNERHYGG 232
EA AAG L + FKFDV +TSVL RA T +LK +PV K+WRLNERHYG
Sbjct: 35 EEEAIAAGKYLKEKNFKFDVVYTSVLKRAICTAWNVLKTADLLHVPVVKTWRLNERHYGS 94
Query: 233 LTGLDKAATAAKYGEEQRVHRDTIGLEDHAYYSNIVDDPRYAS------EPSKEEFPMFE 286
L GL+K+ TA KYGEEQ D +D R+ K+ P E
Sbjct: 95 LQGLNKSETAKKYGEEQVKIWRRS--YDIPPPKLDKEDNRWPGHNVVYKNVPKDALPFTE 152
Query: 287 SLKLTIERTLPYWNNVIVPQYSDETCYLATVTWN 320
LK T+ER LP+W + I P + N
Sbjct: 153 CLKDTVERVLPFWFDHIAPDILANKKVMVAAHGN 186
>d1riia_ c.60.1.1 (A:) Phosphoglycerate mutase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 243
Score = 52.7 bits (125), Expect = 1e-08
Identities = 16/28 (57%), Positives = 22/28 (78%)
Query: 6 IVMVRHGESEWNQKNLFCGWYDAQLSEK 33
+V++RHGES+WN NLF GW D L++K
Sbjct: 6 LVLLRHGESDWNALNLFTGWVDVGLTDK 33
Score = 49.2 bits (116), Expect = 2e-07
Identities = 50/145 (34%), Positives = 65/145 (44%), Gaps = 2/145 (1%)
Query: 173 VNEAEAAGVALAKAGFKFDVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLNERHYGG 232
EA +G +A+ DV +TS+L RA T L + +PV +SWRLNERHYG
Sbjct: 35 QAEAVRSGELIAEHDLLPDVLYTSLLRRAITTAHLALDSADRLWIPVRRSWRLNERHYGA 94
Query: 233 LTGLDKAATAAKYGEEQRVH--RDTIGLEDHAYYSNIVDDPRYASEPSKEEFPMFESLKL 290
L GLDKA T A+YGEEQ + R + P+ E L
Sbjct: 95 LQGLDKAETKARYGEEQFMAWRRSYDTPPPPIERGSQFSQDADPRYADIGGGPLTECLAD 154
Query: 291 TIERTLPYWNNVIVPQYSDETCYLA 315
+ R LPY+ +VIV L
Sbjct: 155 VVARFLPYFTDVIVGDLRVGKTVLI 179
>d1qhfa_ c.60.1.1 (A:) Phosphoglycerate mutase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 240
Score = 51.9 bits (123), Expect = 2e-08
Identities = 52/155 (33%), Positives = 65/155 (41%), Gaps = 4/155 (2%)
Query: 173 VNEAEAAGVALAKAGFKFDVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLNERHYGG 232
EA AG L + DV +TS L+RA T L+ + +PV++SWRLNERHYG
Sbjct: 32 QQEAARAGELLKEKKVYPDVLYTSKLSRAIQTANIALEKADRLWIPVNRSWRLNERHYGD 91
Query: 233 LTGLDKAATAAKYGE----EQRVHRDTIGLEDHAYYSNIVDDPRYASEPSKEEFPMFESL 288
L G DKA T K+GE R D A P ESL
Sbjct: 92 LQGKDKAETLKKFGEEKFNTYRRSFDVPPPPIDASSPFSQKGDERYKYVDPNVLPETESL 151
Query: 289 KLTIERTLPYWNNVIVPQYSDETCYLATVTWNKNK 323
L I+R LPYW +VI + N +
Sbjct: 152 ALVIDRLLPYWQDVIAKDLLSGKTVMIAAHGNSLR 186
Score = 51.5 bits (122), Expect = 3e-08
Identities = 19/28 (67%), Positives = 24/28 (85%)
Query: 6 IVMVRHGESEWNQKNLFCGWYDAQLSEK 33
+V+VRHG+SEWN+KNLF GW D +LS K
Sbjct: 3 LVLVRHGQSEWNEKNLFTGWVDVKLSAK 30
>d1fzta_ c.60.1.1 (A:) Phosphoglycerate mutase {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 211
Score = 49.6 bits (117), Expect = 1e-07
Identities = 18/29 (62%), Positives = 22/29 (75%)
Query: 5 VIVMVRHGESEWNQKNLFCGWYDAQLSEK 33
++V+ RHGESEWN+ NLF GW D LSE
Sbjct: 9 LLVLTRHGESEWNKLNLFTGWKDPALSET 37
Score = 43.1 bits (100), Expect = 1e-05
Identities = 54/154 (35%), Positives = 69/154 (44%), Gaps = 21/154 (13%)
Query: 167 PSSLNSVNEAEAAGVALAKAGFKFDVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLN 226
S + EA+ G L G+KFD+A TS L RAQ T + IL+ +G+ +L KS +LN
Sbjct: 33 ALSETGIKEAKLGGERLKSRGYKFDIAFTSALQRAQKTCQIILEEVGEPNLETIKSEKLN 92
Query: 227 ERHYGGLTGLDKAATAAKYGEEQRVHRDTIGLEDHAYYSNIVDDPRYASEPSKEEFPMFE 286
ER+YG L GL+K K+G EQ A P E
Sbjct: 93 ERYYGDLQGLNKDDARKKWGAEQVQIWR--------------RSYDIA-------PPNGE 131
Query: 287 SLKLTIERTLPYWNNVIVPQYSDETCYLATVTWN 320
SLK T ER LPY+ + IVP L N
Sbjct: 132 SLKDTAERVLPYYKSTIVPHILKGEKVLIAAHGN 165
>d1h2ea_ c.60.1.1 (A:) Broad specificity phosphatase PhoE (YhfR)
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 207
Score = 47.0 bits (110), Expect = 6e-07
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 6 IVMVRHGESEWNQKNLFCGWYDAQLSEK 33
+ + RHGE++WN + GW D+ L+EK
Sbjct: 4 LYLTRHGETKWNVERRMQGWQDSPLTEK 31
>d1v37a_ c.60.1.1 (A:) Alpha-ribazole-5'-phosphate phosphatase
{Thermus thermophilus [TaxId: 274]}
Length = 171
Score = 45.8 bits (107), Expect = 1e-06
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 6 IVMVRHGESEWNQKNLFCGWYDAQLSEK 33
+ +VRHGE+ WN++ GW D L+ +
Sbjct: 3 LWLVRHGETLWNREGRLLGWTDLPLTAE 30
>d1bifa2 c.60.1.4 (A:250-468)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
phosphatase domain {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 219
Score = 37.9 bits (87), Expect = 8e-04
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 6 IVMVRHGESEWNQKNLFCGWYDAQLSEK 33
I + RHGESE N K G D LS +
Sbjct: 2 IYLCRHGESELNLKGRIGG--DPGLSPR 27
>d1nkua_ a.96.1.4 (A:) 3-Methyladenine DNA glycosylase I (Tag)
{Escherichia coli [TaxId: 562]}
Length = 187
Score = 26.4 bits (58), Expect = 3.9
Identities = 13/53 (24%), Positives = 19/53 (35%)
Query: 138 QGVHEQDRFSEFSNRTANSKSSRYARPEYPSSLNSVNEAEAAGVALAKAGFKF 190
Q + F++F N + S ++A AL K GFKF
Sbjct: 104 QMEQNGEPFADFVWSFVNHQPQMTQATTLSEIPTSTPASDALSKALKKRGFKF 156
>d2a1ba1 d.58.56.1 (A:2-102) Carboxysome shell protein CcmK2
{Synechocystis sp. PCC 6803 [TaxId: 1148]}
Length = 101
Score = 25.1 bits (55), Expect = 5.9
Identities = 10/44 (22%), Positives = 18/44 (40%)
Query: 172 SVNEAEAAGVALAKAGFKFDVAHTSVLTRAQNTLKAILKGIGQE 215
V + +AG+ A +V T ++ R L+ +L E
Sbjct: 51 GVQASVSAGIEAANRVNGGEVLSTHIIARPHENLEYVLPIRYTE 94
>d2a10a1 d.58.56.1 (A:4-107) Carboxysome shell protein CcmK4
{Synechocystis sp. PCC 6803 [TaxId: 1148]}
Length = 104
Score = 24.7 bits (54), Expect = 7.9
Identities = 10/45 (22%), Positives = 16/45 (35%)
Query: 172 SVNEAEAAGVALAKAGFKFDVAHTSVLTRAQNTLKAILKGIGQED 216
V A AAG+ DV ++ R + A+L +
Sbjct: 51 EVKTAMAAGIDAINRTEGADVKTWVIIPRPHENVVAVLPIDFSPE 95
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.132 0.401
Gapped
Lambda K H
0.267 0.0432 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,181,928
Number of extensions: 51868
Number of successful extensions: 103
Number of sequences better than 10.0: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 19
Length of query: 325
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 239
Effective length of database: 1,226,816
Effective search space: 293209024
Effective search space used: 293209024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.9 bits)