Query psy11844
Match_columns 241
No_of_seqs 161 out of 1093
Neff 6.2
Searched_HMMs 46136
Date Fri Aug 16 20:22:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11844.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11844hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4026|consensus 100.0 2.6E-37 5.6E-42 262.9 5.0 167 17-191 1-175 (207)
2 PF10242 L_HGMIC_fpl: Lipoma H 99.9 2.7E-27 5.9E-32 201.3 4.5 154 25-185 1-165 (181)
3 TIGR01258 pgm_1 phosphoglycera 99.7 2.2E-17 4.7E-22 146.4 12.5 101 135-236 145-245 (245)
4 PRK14115 gpmA phosphoglyceromu 99.7 2.5E-17 5.4E-22 146.2 12.4 104 133-237 143-246 (247)
5 PTZ00123 phosphoglycerate muta 99.7 8.4E-17 1.8E-21 141.7 11.7 105 133-238 131-235 (236)
6 PRK14120 gpmA phosphoglyceromu 99.7 2.2E-16 4.8E-21 140.4 11.9 102 135-236 147-248 (249)
7 PRK13463 phosphatase PhoE; Pro 99.7 4.9E-16 1.1E-20 133.5 9.5 106 114-224 95-202 (203)
8 PRK14117 gpmA phosphoglyceromu 99.6 2.3E-15 5E-20 132.1 10.1 82 133-214 144-225 (230)
9 PRK14116 gpmA phosphoglyceromu 99.6 2.2E-15 4.7E-20 132.0 9.7 82 133-214 144-225 (228)
10 PRK15004 alpha-ribazole phosph 99.6 3.1E-15 6.7E-20 127.7 9.9 96 115-212 94-190 (199)
11 PRK01112 phosphoglyceromutase; 99.6 3.2E-15 6.9E-20 131.3 9.7 101 113-213 122-223 (228)
12 PRK14119 gpmA phosphoglyceromu 99.6 4.4E-15 9.5E-20 129.9 10.2 80 134-213 145-224 (228)
13 COG0588 GpmA Phosphoglycerate 99.6 3.6E-15 7.7E-20 129.1 7.7 86 133-219 144-229 (230)
14 PRK03482 phosphoglycerate muta 99.6 1.5E-14 3.2E-19 124.8 10.4 92 131-226 112-207 (215)
15 PRK14118 gpmA phosphoglyceromu 99.6 1.3E-14 2.7E-19 127.1 10.0 82 133-214 143-224 (227)
16 PRK13462 acid phosphatase; Pro 99.5 1.3E-14 2.9E-19 125.0 8.4 86 134-224 112-197 (203)
17 TIGR03848 MSMEG_4193 probable 99.5 2.5E-14 5.3E-19 122.5 9.4 98 123-223 100-201 (204)
18 PRK07238 bifunctional RNase H/ 99.5 2E-14 4.2E-19 134.0 9.2 106 115-224 266-371 (372)
19 PRK01295 phosphoglyceromutase; 99.5 1.6E-13 3.4E-18 118.5 9.8 97 114-211 100-198 (206)
20 COG0406 phoE Broad specificity 99.5 2.7E-13 5.8E-18 115.9 9.5 94 114-209 97-191 (208)
21 TIGR03162 ribazole_cobC alpha- 99.4 2.5E-13 5.4E-18 113.0 8.0 85 116-203 92-177 (177)
22 KOG0235|consensus 99.3 4.5E-12 9.7E-17 110.5 7.6 96 125-220 118-213 (214)
23 PTZ00322 6-phosphofructo-2-kin 99.2 4.5E-11 9.7E-16 119.5 8.7 92 113-208 529-627 (664)
24 PTZ00122 phosphoglycerate muta 99.2 4.5E-11 9.8E-16 109.1 7.9 92 134-228 203-295 (299)
25 PF00300 His_Phos_1: Histidine 98.5 6.1E-08 1.3E-12 77.7 3.6 61 117-178 97-158 (158)
26 KOG0234|consensus 98.5 1.9E-07 4E-12 88.8 7.2 111 108-224 324-435 (438)
27 smart00855 PGAM Phosphoglycera 98.5 1.9E-07 4.2E-12 76.0 4.9 50 129-178 106-155 (155)
28 cd07067 HP_PGM_like Histidine 98.4 6.8E-07 1.5E-11 72.2 7.0 67 138-208 78-144 (153)
29 cd07040 HP Histidine phosphata 98.1 1.3E-05 2.8E-10 63.9 7.3 63 146-208 82-144 (153)
30 PF00822 PMP22_Claudin: PMP-22 97.7 0.00011 2.3E-09 60.3 7.0 77 38-116 17-97 (166)
31 KOG4609|consensus 97.5 0.00016 3.5E-09 63.5 5.5 78 146-225 197-277 (284)
32 KOG3734|consensus 96.3 0.0083 1.8E-07 54.4 5.6 52 135-188 168-219 (272)
33 PF07062 Clc-like: Clc-like; 95.0 0.076 1.6E-06 46.6 6.7 84 28-111 6-126 (211)
34 PF13903 Claudin_2: PMP-22/EMP 94.2 0.13 2.8E-06 41.6 5.9 84 35-124 2-103 (172)
35 PRK06193 hypothetical protein; 92.3 0.34 7.4E-06 42.3 5.9 45 136-184 132-176 (206)
36 TIGR00249 sixA phosphohistidin 92.1 0.74 1.6E-05 37.7 7.4 44 162-209 99-142 (152)
37 PF06687 SUR7: SUR7/PalI famil 85.2 4.7 0.0001 34.1 7.8 82 31-112 7-137 (212)
38 PF06653 Claudin_3: Tight junc 83.0 6.7 0.00014 32.7 7.5 82 33-130 12-96 (163)
39 PRK15416 lipopolysaccharide co 81.6 3.9 8.4E-05 35.6 5.8 45 138-184 128-172 (201)
40 PF15108 TMEM37: Voltage-depen 79.2 6.3 0.00014 33.3 5.9 58 31-90 23-83 (184)
41 PF11808 DUF3329: Domain of un 75.8 12 0.00027 28.1 6.3 40 115-154 42-83 (90)
42 PRK10848 phosphohistidine phos 73.0 18 0.00038 29.8 7.2 42 162-207 99-140 (159)
43 KOG4671|consensus 72.2 21 0.00045 30.9 7.4 75 31-114 23-103 (201)
44 PHA00422 hypothetical protein 61.8 3.3 7.1E-05 29.8 0.5 17 8-24 12-28 (69)
45 KOG4754|consensus 60.5 15 0.00034 32.6 4.5 44 138-184 158-201 (248)
46 PF15345 TMEM51: Transmembrane 54.2 3.2 7E-05 36.9 -0.7 24 88-111 57-80 (233)
47 TIGR02978 phageshock_pspC phag 39.9 25 0.00053 28.2 2.3 80 73-154 16-95 (121)
48 PHA02849 putative transmembran 35.8 35 0.00076 25.4 2.4 38 87-125 10-47 (82)
49 smart00195 DSPc Dual specifici 33.9 1.5E+02 0.0032 22.9 6.0 52 138-193 57-114 (138)
50 PF14606 Lipase_GDSL_3: GDSL-l 28.4 46 0.001 28.4 2.3 33 139-173 71-103 (178)
51 PF15179 Myc_target_1: Myc tar 27.8 63 0.0014 28.0 3.0 38 91-128 22-59 (197)
52 PF14584 DUF4446: Protein of u 27.5 1.7E+02 0.0038 24.2 5.6 18 137-154 40-57 (151)
53 PRK10697 DNA-binding transcrip 26.0 1.2E+02 0.0026 24.3 4.1 72 73-154 21-92 (118)
54 PF14423 Imm5: Immunity protei 25.7 73 0.0016 27.4 3.1 34 12-46 90-123 (183)
55 COG3630 OadG Na+-transporting 25.5 96 0.0021 23.4 3.3 20 95-114 15-34 (84)
56 PF13422 DUF4110: Domain of un 25.0 82 0.0018 24.2 2.9 50 136-194 13-62 (96)
57 PF08391 Ly49: Ly49-like prote 24.0 26 0.00056 28.1 0.0 29 86-114 1-29 (119)
58 PF02439 Adeno_E3_CR2: Adenovi 23.2 1.3E+02 0.0028 19.3 3.1 14 107-120 20-33 (38)
59 PF01764 Lipase_3: Lipase (cla 23.0 1.8E+02 0.004 22.1 4.8 39 143-183 45-85 (140)
60 TIGR00847 ccoS cytochrome oxid 21.6 1.8E+02 0.0038 19.9 3.7 26 93-118 3-28 (51)
61 PF09370 TIM-br_sig_trns: TIM- 21.0 81 0.0018 28.8 2.6 37 137-177 190-226 (268)
62 PF09788 Tmemb_55A: Transmembr 21.0 98 0.0021 28.1 3.0 54 73-129 182-235 (256)
63 PF03597 CcoS: Cytochrome oxid 20.8 1.6E+02 0.0035 19.4 3.3 25 94-118 3-27 (45)
64 PF00782 DSPc: Dual specificit 20.2 1.6E+02 0.0035 22.4 3.9 52 137-192 51-108 (133)
No 1
>KOG4026|consensus
Probab=100.00 E-value=2.6e-37 Score=262.92 Aligned_cols=167 Identities=29% Similarity=0.541 Sum_probs=145.5
Q ss_pred hhhccccchhHHHHHHHHHHHHHHHhhhccceeeccC---CcceeecccccccccCC-ccccccccCcceeccchhhHHH
Q psy11844 17 NYVRNSKAVGVLWGIFTLCFALIVSVAFLTPEWIGIA---NKGRLGLWSSCEFDVNG-FEECTGKFAEFMEISNAAFKIS 92 (241)
Q Consensus 17 ~y~rn~r~igvlW~~~t~~~ai~~~v~f~~p~Wi~~~---~~~~fgl~~~C~~~~~~-~~~C~g~~~~f~~ips~a~~~~ 92 (241)
+|+|||||+||+|++||||+|++++|+|||||||||+ ++||||||+||.+++.. ..+|+|++++|++|||.+||++
T Consensus 1 ~y~rn~~~~gviW~l~t~c~a~l~~v~fi~P~Wig~~~~~~~g~fGl~~~C~~~~~~~~~~~~~~~~~~~~ips~~~~~a 80 (207)
T KOG4026|consen 1 MYYRNSRAVGVIWALCTICFAVLFMVAFIQPYWIGDSVNGKPGSFGLFTYCVGPVLPGSLECRGRLASFSSIPSNEFKLA 80 (207)
T ss_pred CeeehhhHHHHHHHHHHHHHHHHHHHHhccceeccCCcCCCCccccceeeccCCCCCCcccccCCccccccCCcHHHHHH
Confidence 6999999999999999999999999999999999996 57899999999988653 3478899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHhhhccCCCCCCCCHHHHHHhHHH-HHHhhccccccCC---CeEEE
Q psy11844 93 TVLCLVSVTLALVTIAVMLLFFFMQPTSVYMVAAWLQIISEEFPMFESLKLTIERTLP-YWNNVIVPQLKEG---KKILI 168 (241)
Q Consensus 93 ~~~~~~~~~l~~~~~~~~~l~~~i~~r~Pe~~~aW~dp~a~~~pgGESl~~~~~Rv~~-~~~~~i~~~~~~g---~~VLV 168 (241)
++||++|+.|++++++++.+..+|+++...+.++|++..++....-.++ ++| +|++..++++... +-.+
T Consensus 81 ~f~vlla~~Lill~i~~~~l~~~c~~~si~~~cg~~q~~a~l~milGc~------lyP~GW~s~~vr~~CG~~a~ky~l- 153 (207)
T KOG4026|consen 81 AFFVLLAFVLILLLIVFLALLGCCRSKSIFNMCGWMQGIAGLCMILGCA------LYPDGWDSPEVRRMCGAKAGKYYL- 153 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHH------hcCCccCCHHHHHHhccccCCccC-
Confidence 9999999999999999999999999999999999999776533333344 788 8988778776543 3455
Q ss_pred EecchhHHHHHHHhhCCChhhhh
Q psy11844 169 AAHGNSLRGIVKHLDNMSDEAIM 191 (241)
Q Consensus 169 VsHGgvIrall~~llg~~~e~~~ 191 (241)
+|+.+-++.++.+.|.-+..+.
T Consensus 154 -G~CsIgWaY~lAIig~~daliL 175 (207)
T KOG4026|consen 154 -GDCSIGWAYYLAIIGILDALIL 175 (207)
T ss_pred -ccccccHHHHHHHHHHHHHHHH
Confidence 9999999999999988777654
No 2
>PF10242 L_HGMIC_fpl: Lipoma HMGIC fusion partner-like protein; InterPro: IPR019372 This is a group of proteins expressed from a series of genes referred to as Lipoma HGMIC fusion partner-like. The proteins carry four highly conserved transmembrane domains. In certain instances, as in LHFPL5, mutations cause deafness in humans [] or hypospadias []. LHFPL1 is transcribed in six liver tumour cell lines [].
Probab=99.93 E-value=2.7e-27 Score=201.27 Aligned_cols=154 Identities=27% Similarity=0.488 Sum_probs=120.7
Q ss_pred hhHHHHHHHHHHHHHHHhhhccceeeccC----Ccceeecccccc-cccCCccccccccCcceeccchhhHHHHHHHHHH
Q psy11844 25 VGVLWGIFTLCFALIVSVAFLTPEWIGIA----NKGRLGLWSSCE-FDVNGFEECTGKFAEFMEISNAAFKISTVLCLVS 99 (241)
Q Consensus 25 igvlW~~~t~~~ai~~~v~f~~p~Wi~~~----~~~~fgl~~~C~-~~~~~~~~C~g~~~~f~~ips~a~~~~~~~~~~~ 99 (241)
|||||+++|+|+|++++++|+|||||+|+ .++|||||+||. ++....++|.++..+|.+|||.+||++++|+++|
T Consensus 1 vgvlW~llsl~~ail~~vsfi~P~Wl~~~~~~~~~~sfGlf~rC~~~~~~~~~~C~~~~~~f~~iPs~~Wkaa~~~~~~g 80 (181)
T PF10242_consen 1 VGVLWALLSLCAAILCVVSFISPYWLGGSESTPYSGSFGLFRRCSGQMDEWEQECGGYAESFGDIPSSAWKAAAFFVGIG 80 (181)
T ss_pred CccHHHHHHHHHHHHHHHHHcCchhccCCcCCCCCceEEeehhhCcCCCCCCCccCCcCCCccccCcHHHHHHHHHHHHH
Confidence 69999999999999999999999999974 589999999999 3333467996555699999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcc----cCCHHHHHHHhhhccCCCCCCCCHHHHHHhHHH-HHHhhccccccC-CCeEEEEecch
Q psy11844 100 VTLALVTIAVMLLFFFMQ----PTSVYMVAAWLQIISEEFPMFESLKLTIERTLP-YWNNVIVPQLKE-GKKILIAAHGN 173 (241)
Q Consensus 100 ~~l~~~~~~~~~l~~~i~----~r~Pe~~~aW~dp~a~~~pgGESl~~~~~Rv~~-~~~~~i~~~~~~-g~~VLVVsHGg 173 (241)
++| ++.+.++.++.+++ .+...+.+.|.|..++..--...+ ++| +|++..+++... +.+.=-.+.+.
T Consensus 81 ~~L-l~~~~~~~L~~~c~~~~~~~sv~~i~g~~Q~~A~l~~~~g~~------~yP~Gw~s~~v~~~CG~~s~~y~~g~C~ 153 (181)
T PF10242_consen 81 CVL-LLLIALLSLFSCCFRSICSRSVFKICGWLQFVAGLCLLLGCL------LYPAGWDSPEVRQLCGPDSDPYKLGDCS 153 (181)
T ss_pred HHH-HHHHHHHHHHHHHHhccCCceEeeechHHHHHHHHHHHHhhe------eecCccCCcHHHhhhcCCCCceeCCCCC
Confidence 999 66666667777777 889999999999776554444455 788 888877776542 11222336777
Q ss_pred hHHHHHHHhhCC
Q psy11844 174 SLRGIVKHLDNM 185 (241)
Q Consensus 174 vIrall~~llg~ 185 (241)
+-++.+..+.|.
T Consensus 154 ~gwa~~la~~~~ 165 (181)
T PF10242_consen 154 LGWAYYLAIIGV 165 (181)
T ss_pred CChHHHHHHHHH
Confidence 777777766554
No 3
>TIGR01258 pgm_1 phosphoglycerate mutase, BPG-dependent, family 1. Most members of this family are phosphoglycerate mutase (EC 5.4.2.1). This enzyme interconverts 2-phosphoglycerate and 3-phosphoglycerate. The enzyme is transiently phosphorylated on an active site histidine by 2,3-diphosphoglyerate, which is both substrate and product. Some members of this family have are phosphoglycerate mutase as a minor activity and act primarily as a bisphoglycerate mutase, interconverting 2,3-diphosphoglycerate and 1,3-diphosphoglycerate (EC 5.4.2.4). This model is designated as a subfamily for this reason. The second and third paralogs in S. cerevisiae are somewhat divergent and apparently inactive (see PUBMED:9544241) but are also part of this subfamily phylogenetically.
Probab=99.74 E-value=2.2e-17 Score=146.44 Aligned_cols=101 Identities=64% Similarity=1.052 Sum_probs=91.8
Q ss_pred CCCCCCHHHHHHhHHHHHHhhccccccCCCeEEEEecchhHHHHHHHhhCCChhhhhcccCCCcccEEEEEcCCCCeeee
Q psy11844 135 FPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMSDEAIMGLNLPTGIPFVYELDENLKPVVS 214 (241)
Q Consensus 135 ~pgGESl~~~~~Rv~~~~~~~i~~~~~~g~~VLVVsHGgvIrall~~llg~~~e~~~~~~i~n~s~s~ie~~~~~~~l~~ 214 (241)
+|+|||+.++.+|+.+++++++.++.+++++|||||||++||++++++++++.+.++.+.++||++++++++++.+.+.-
T Consensus 145 ~p~GES~~~~~~Rv~~~l~~l~~~~~~~~~~vlvVsHg~vir~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (245)
T TIGR01258 145 LPLTESLKDTIARVLPYWNDEIAPDLLSGKRVLIVAHGNSLRALVKHLEGISDEEILELNIPTGIPLVYELDENLKPIKH 224 (245)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhhhhcCCCEEEEEcChHHHHHHHHHHHCcCHHHHhheecCCCceEEEEECCCCCEeee
Confidence 78999999999999999999654333467899999999999999999999999999999999999999999999999888
Q ss_pred ecccCCHHHHHHHHHHHhcccc
Q psy11844 215 MKFLGDEETVKKAMEAVANQGK 236 (241)
Q Consensus 215 ~~~~~d~~~l~~~~~~~~~~~~ 236 (241)
+ |+|||+....+...++++|+
T Consensus 225 ~-~~~~~~~~~~~~~~~~~~~~ 245 (245)
T TIGR01258 225 Y-YLGDPEAAAAAAEAVANQGK 245 (245)
T ss_pred e-ecCCHHHHHHHHHHHHhcCC
Confidence 6 99999998888888899886
No 4
>PRK14115 gpmA phosphoglyceromutase; Provisional
Probab=99.73 E-value=2.5e-17 Score=146.25 Aligned_cols=104 Identities=66% Similarity=1.067 Sum_probs=94.7
Q ss_pred CCCCCCCCHHHHHHhHHHHHHhhccccccCCCeEEEEecchhHHHHHHHhhCCChhhhhcccCCCcccEEEEEcCCCCee
Q psy11844 133 EEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMSDEAIMGLNLPTGIPFVYELDENLKPV 212 (241)
Q Consensus 133 ~~~pgGESl~~~~~Rv~~~~~~~i~~~~~~g~~VLVVsHGgvIrall~~llg~~~e~~~~~~i~n~s~s~ie~~~~~~~l 212 (241)
..+|+|||+.++.+|+.++|++++.++.+++++|||||||++||++++++++++.+.+|.+.++|+++++++++++..++
T Consensus 143 ~~~p~GES~~~~~~Rv~~~l~~~i~~~~~~~~~vlvVtHggvir~l~~~ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 222 (247)
T PRK14115 143 EELPLTESLKDTIARVLPYWNETIAPQLKSGKRVLIAAHGNSLRALVKYLDNISDEEILELNIPTGVPLVYELDENLKPI 222 (247)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeChHHHHHHHHHHhCCCHHHhheeecCCCceEEEEECCCCcEe
Confidence 34799999999999999999986554335678999999999999999999999999999999999999999999999998
Q ss_pred eeecccCCHHHHHHHHHHHhccccc
Q psy11844 213 VSMKFLGDEETVKKAMEAVANQGKA 237 (241)
Q Consensus 213 ~~~~~~~d~~~l~~~~~~~~~~~~~ 237 (241)
..+ |+||.+.+..+.+.++++|++
T Consensus 223 ~~~-~~~~~~~~~~~~~~~~~~~~~ 246 (247)
T PRK14115 223 KHY-YLGDADEIAAAAAAVANQGKA 246 (247)
T ss_pred eeE-ecCChHHHHHHHHHHHhcccC
Confidence 884 999999999999999999986
No 5
>PTZ00123 phosphoglycerate mutase like-protein; Provisional
Probab=99.71 E-value=8.4e-17 Score=141.67 Aligned_cols=105 Identities=61% Similarity=0.980 Sum_probs=94.7
Q ss_pred CCCCCCCCHHHHHHhHHHHHHhhccccccCCCeEEEEecchhHHHHHHHhhCCChhhhhcccCCCcccEEEEEcCCCCee
Q psy11844 133 EEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMSDEAIMGLNLPTGIPFVYELDENLKPV 212 (241)
Q Consensus 133 ~~~pgGESl~~~~~Rv~~~~~~~i~~~~~~g~~VLVVsHGgvIrall~~llg~~~e~~~~~~i~n~s~s~ie~~~~~~~l 212 (241)
..+|+|||+.++.+|+.++|++++.+..+++++|||||||++||++++++++++.+.++++.++||++++++++++...+
T Consensus 131 ~~~p~gES~~~~~~Rv~~~l~~li~~~~~~~~~vliVsHG~vir~ll~~l~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~ 210 (236)
T PTZ00123 131 DALPNTECLKDTVERVLPYWEDHIAPDILAGKKVLVAAHGNSLRALVKYLDKMSEEDILELNIPTGVPLVYELDENLKPI 210 (236)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCHHHHHHHHHHHhCCCHHHHhhccCCCCceEEEEECCCCCEe
Confidence 35689999999999999999985543334678999999999999999999999999999999999999999999998888
Q ss_pred eeecccCCHHHHHHHHHHHhcccccc
Q psy11844 213 VSMKFLGDEETVKKAMEAVANQGKAN 238 (241)
Q Consensus 213 ~~~~~~~d~~~l~~~~~~~~~~~~~~ 238 (241)
.. .|+-|.+.|...+..++++|++.
T Consensus 211 ~~-~~~~~~~~~~~~~~~~~~~~~~~ 235 (236)
T PTZ00123 211 KK-YYLLDEEELKAKMEAVANQGKAK 235 (236)
T ss_pred ee-eecCCHHHHHHHHHHHHhccccC
Confidence 87 59999999999999999999874
No 6
>PRK14120 gpmA phosphoglyceromutase; Provisional
Probab=99.69 E-value=2.2e-16 Score=140.40 Aligned_cols=102 Identities=59% Similarity=0.890 Sum_probs=89.2
Q ss_pred CCCCCCHHHHHHhHHHHHHhhccccccCCCeEEEEecchhHHHHHHHhhCCChhhhhcccCCCcccEEEEEcCCCCeeee
Q psy11844 135 FPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMSDEAIMGLNLPTGIPFVYELDENLKPVVS 214 (241)
Q Consensus 135 ~pgGESl~~~~~Rv~~~~~~~i~~~~~~g~~VLVVsHGgvIrall~~llg~~~e~~~~~~i~n~s~s~ie~~~~~~~l~~ 214 (241)
+|+|||+.++.+|+.++|++++..+.+++++|||||||++||++++++++++.++.|++.++||++++++++++...+.-
T Consensus 147 ~p~GES~~~~~~Rv~~~l~~~~~~~~~~~~~iliVsHggvir~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 226 (249)
T PRK14120 147 GPRTECLKDVVARFLPYWEDDIVPDLKAGKTVLIAAHGNSLRALVKHLDGISDEDIAGLNIPTGIPLVYELDEDFKPLNP 226 (249)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHhhCCCEEEEEeCHHHHHHHHHHHhCCCHHHhheeccCCCceEEEEECCCCcEecc
Confidence 58999999999999999998544343567899999999999999999999999999999999999999999888777665
Q ss_pred ecccCCHHHHHHHHHHHhcccc
Q psy11844 215 MKFLGDEETVKKAMEAVANQGK 236 (241)
Q Consensus 215 ~~~~~d~~~l~~~~~~~~~~~~ 236 (241)
..-.-|++....+.+.++++|+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~ 248 (249)
T PRK14120 227 GGTYLDPEAAAAGAAAVANQGK 248 (249)
T ss_pred cceecCHHHHHHHHHHHHhccC
Confidence 4466788887788888999987
No 7
>PRK13463 phosphatase PhoE; Provisional
Probab=99.65 E-value=4.9e-16 Score=133.45 Aligned_cols=106 Identities=13% Similarity=0.120 Sum_probs=89.0
Q ss_pred HhcccCCHHHHHHHh-hhccCCCCCCCCHHHHHHhHHHHHHhhccccccCCCeEEEEecchhHHHHHHHhhCCChhhhhc
Q psy11844 114 FFMQPTSVYMVAAWL-QIISEEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMSDEAIMG 192 (241)
Q Consensus 114 ~~i~~r~Pe~~~aW~-dp~a~~~pgGESl~~~~~Rv~~~~~~~i~~~~~~g~~VLVVsHGgvIrall~~llg~~~e~~~~ 192 (241)
-.+++++|+.+..|. ++....+|+|||+.++.+|+.++++++.. + +++++|||||||++||+++++++|++++.+|+
T Consensus 95 ~e~~~~~p~~~~~~~~~~~~~~~~~gEs~~~~~~R~~~~l~~i~~-~-~~~~~vlvVsHg~~ir~~~~~~~~~~~~~~~~ 172 (203)
T PRK13463 95 DDIERQYPDDIQLFWNEPHLFQSTSGENFEAVHKRVIEGMQLLLE-K-HKGESILIVSHAAAAKLLVGHFAGIEIENVWD 172 (203)
T ss_pred HHHhhhCHHHHHHHHhChhccCCCCCeEHHHHHHHHHHHHHHHHH-h-CCCCEEEEEeChHHHHHHHHHHhCCCHHHHhh
Confidence 345788999998877 46678889999999999999999999443 3 56789999999999999999999999999998
Q ss_pred cc-CCCcccEEEEEcCCCCeeeeecccCCHHHH
Q psy11844 193 LN-LPTGIPFVYELDENLKPVVSMKFLGDEETV 224 (241)
Q Consensus 193 ~~-i~n~s~s~ie~~~~~~~l~~~~~~~d~~~l 224 (241)
+. ++|+++++++++++...+ ..+||.+||
T Consensus 173 ~~~~~~~~~s~~~~~~~~~~~---~~~n~~~~l 202 (203)
T PRK13463 173 DPFMHSASLSIIEFEDGKGEV---KQFADISHF 202 (203)
T ss_pred ccCccCceEEEEEEeCCcEEE---EEecccccc
Confidence 74 799999999997654443 367888876
No 8
>PRK14117 gpmA phosphoglyceromutase; Provisional
Probab=99.61 E-value=2.3e-15 Score=132.08 Aligned_cols=82 Identities=45% Similarity=0.872 Sum_probs=72.8
Q ss_pred CCCCCCCCHHHHHHhHHHHHHhhccccccCCCeEEEEecchhHHHHHHHhhCCChhhhhcccCCCcccEEEEEcCCCCee
Q psy11844 133 EEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMSDEAIMGLNLPTGIPFVYELDENLKPV 212 (241)
Q Consensus 133 ~~~pgGESl~~~~~Rv~~~~~~~i~~~~~~g~~VLVVsHGgvIrall~~llg~~~e~~~~~~i~n~s~s~ie~~~~~~~l 212 (241)
..+|+|||+.++.+|+.++|++++.++.+++++|||||||++||+++++++|++.+..+++.++||++++++++++...+
T Consensus 144 ~~~p~GEs~~~~~~Rv~~~l~~~~~~~~~~~~~vlvVsHg~~ir~ll~~~lg~~~~~~~~~~~~n~s~~~i~~~~~~~~~ 223 (230)
T PRK14117 144 SVIPDAENLKVTLERALPFWEDKIAPALKDGKNVFVGAHGNSIRALVKHIKGLSDDEIMDVEIPNFPPLVFEFDEKLNVV 223 (230)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhhccCCCEEEEEeChHHHHHHHHHHhCcCHHHHhhcCCCCceEEEEEECCCCcee
Confidence 46799999999999999999995533323568999999999999999999999999999999999999999998887777
Q ss_pred ee
Q psy11844 213 VS 214 (241)
Q Consensus 213 ~~ 214 (241)
..
T Consensus 224 ~~ 225 (230)
T PRK14117 224 KE 225 (230)
T ss_pred ec
Confidence 75
No 9
>PRK14116 gpmA phosphoglyceromutase; Provisional
Probab=99.61 E-value=2.2e-15 Score=131.99 Aligned_cols=82 Identities=49% Similarity=0.865 Sum_probs=73.3
Q ss_pred CCCCCCCCHHHHHHhHHHHHHhhccccccCCCeEEEEecchhHHHHHHHhhCCChhhhhcccCCCcccEEEEEcCCCCee
Q psy11844 133 EEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMSDEAIMGLNLPTGIPFVYELDENLKPV 212 (241)
Q Consensus 133 ~~~pgGESl~~~~~Rv~~~~~~~i~~~~~~g~~VLVVsHGgvIrall~~llg~~~e~~~~~~i~n~s~s~ie~~~~~~~l 212 (241)
..+|||||+.++.+|+.++|++++.++.+++++|||||||++||+++++++|+|+++++++.++||++++++++++...+
T Consensus 144 ~~~pgGEs~~~~~~Rv~~~l~~~i~~~~~~~~~vlvVsHg~vir~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (228)
T PRK14116 144 RIIPGGENLKVTLERVIPFWEDHIAPDLLDGKNVIIAAHGNSLRALTKYIENISDEDIMNLEMATGEPVVYDFDEKLNVV 223 (228)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCeEEEEcChHHHHHHHHHHhCCCHHHHHhccCCCCCeEEEEECCCCCcc
Confidence 46799999999999999999995543324678999999999999999999999999999999999999999999988877
Q ss_pred ee
Q psy11844 213 VS 214 (241)
Q Consensus 213 ~~ 214 (241)
.+
T Consensus 224 ~~ 225 (228)
T PRK14116 224 SK 225 (228)
T ss_pred cc
Confidence 64
No 10
>PRK15004 alpha-ribazole phosphatase; Provisional
Probab=99.61 E-value=3.1e-15 Score=127.73 Aligned_cols=96 Identities=15% Similarity=0.161 Sum_probs=82.9
Q ss_pred hcccCCHHHHHHHhh-hccCCCCCCCCHHHHHHhHHHHHHhhccccccCCCeEEEEecchhHHHHHHHhhCCChhhhhcc
Q psy11844 115 FMQPTSVYMVAAWLQ-IISEEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMSDEAIMGL 193 (241)
Q Consensus 115 ~i~~r~Pe~~~aW~d-p~a~~~pgGESl~~~~~Rv~~~~~~~i~~~~~~g~~VLVVsHGgvIrall~~llg~~~e~~~~~ 193 (241)
.+..++|+.+..|.. +....+|+|||+.++++|+.++++++ .++ +++++|||||||++|++++++++|.+.+.+|++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~gEs~~~~~~Rv~~~l~~l-~~~-~~~~~iliVsHg~~i~~l~~~~~~~~~~~~~~~ 171 (199)
T PRK15004 94 DLMQEDAENYAAWCNDWQHAIPTNGEGFQAFSQRVERFIARL-SAF-QHYQNLLIVSHQGVLSLLIARLLGMPAEAMWHF 171 (199)
T ss_pred HHHHHCHHHHHHHHhChhhcCCCCCcCHHHHHHHHHHHHHHH-HHh-CCCCeEEEEcChHHHHHHHHHHhCCCHHHHhcc
Confidence 345678988889885 56678899999999999999999995 434 567899999999999999999999999999999
Q ss_pred cCCCcccEEEEEcCCCCee
Q psy11844 194 NLPTGIPFVYELDENLKPV 212 (241)
Q Consensus 194 ~i~n~s~s~ie~~~~~~~l 212 (241)
.++||++++++++++...+
T Consensus 172 ~~~~~~~~~l~~~~~~~~~ 190 (199)
T PRK15004 172 RVEQGCWSAIDINQGFATL 190 (199)
T ss_pred ccCCceEEEEEecCCcEEE
Confidence 9999999999997654444
No 11
>PRK01112 phosphoglyceromutase; Provisional
Probab=99.60 E-value=3.2e-15 Score=131.25 Aligned_cols=101 Identities=36% Similarity=0.539 Sum_probs=83.6
Q ss_pred HHhcccCCHHHHHH-HhhhccCCCCCCCCHHHHHHhHHHHHHhhccccccCCCeEEEEecchhHHHHHHHhhCCChhhhh
Q psy11844 113 FFFMQPTSVYMVAA-WLQIISEEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMSDEAIM 191 (241)
Q Consensus 113 ~~~i~~r~Pe~~~a-W~dp~a~~~pgGESl~~~~~Rv~~~~~~~i~~~~~~g~~VLVVsHGgvIrall~~llg~~~e~~~ 191 (241)
+-.+.+++|+...+ |.++....+|+|||+.|+.+|+.++|++.+.+...++++|||||||++||++++++++++.+.++
T Consensus 122 ~~ei~~~~~~~~~~~w~~~~~~~~p~GES~~d~~~Rv~~~l~~~~~~~~~~~~~ilVVsHg~vir~l~~~ll~~~~~~~~ 201 (228)
T PRK01112 122 KAETAEKFGEEQVKLWRRSYKTAPPQGESLEDTGQRTLPYFQNRILPHLQQGKNVFVSAHGNSLRSLIMDLEKLSEEEVL 201 (228)
T ss_pred HHHHHHHCcHHHHHHHhCcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeCHHHHHHHHHHHhCCCHHHHh
Confidence 34456778776554 55566778999999999999999999985553323678999999999999999999999999999
Q ss_pred cccCCCcccEEEEEcCCCCeee
Q psy11844 192 GLNLPTGIPFVYELDENLKPVV 213 (241)
Q Consensus 192 ~~~i~n~s~s~ie~~~~~~~l~ 213 (241)
++.++|+++++++++.++..+-
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~ 223 (228)
T PRK01112 202 SLELPTGKPIVYEWTGQKFEKH 223 (228)
T ss_pred hcccCCcceEEEEECCCCcccc
Confidence 9999999999999987655443
No 12
>PRK14119 gpmA phosphoglyceromutase; Provisional
Probab=99.60 E-value=4.4e-15 Score=129.88 Aligned_cols=80 Identities=41% Similarity=0.786 Sum_probs=71.1
Q ss_pred CCCCCCCHHHHHHhHHHHHHhhccccccCCCeEEEEecchhHHHHHHHhhCCChhhhhcccCCCcccEEEEEcCCCCeee
Q psy11844 134 EFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMSDEAIMGLNLPTGIPFVYELDENLKPVV 213 (241)
Q Consensus 134 ~~pgGESl~~~~~Rv~~~~~~~i~~~~~~g~~VLVVsHGgvIrall~~llg~~~e~~~~~~i~n~s~s~ie~~~~~~~l~ 213 (241)
.+|+|||+.++.+|+.++|++++.+...++++|||||||++||+++++++|++.+++|++.++||++++++++++...+.
T Consensus 145 ~~p~GES~~~~~~Rv~~~l~~~~~~~~~~~~~vlvVsHg~vir~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (228)
T PRK14119 145 MMPYSESLKDTLVRVIPFWTDHISQYLLDGQTVLVSAHGNSIRALIKYLEDVSDEDIINYEIKTGAPLVYELTDDLEVID 224 (228)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHhhccCCCeEEEEeChHHHHHHHHHHhCCCHHHHhhcCCCCCceEEEEECCCCceec
Confidence 46899999999999999999955433236789999999999999999999999999999999999999999998866655
No 13
>COG0588 GpmA Phosphoglycerate mutase 1 [Carbohydrate transport and metabolism]
Probab=99.58 E-value=3.6e-15 Score=129.09 Aligned_cols=86 Identities=58% Similarity=1.023 Sum_probs=79.5
Q ss_pred CCCCCCCCHHHHHHhHHHHHHhhccccccCCCeEEEEecchhHHHHHHHhhCCChhhhhcccCCCcccEEEEEcCCCCee
Q psy11844 133 EEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMSDEAIMGLNLPTGIPFVYELDENLKPV 212 (241)
Q Consensus 133 ~~~pgGESl~~~~~Rv~~~~~~~i~~~~~~g~~VLVVsHGgvIrall~~llg~~~e~~~~~~i~n~s~s~ie~~~~~~~l 212 (241)
...|.+||+.++.+|+.|+|++.|.+++..|++||||+||+.+||++.++.|++.+++..+.++|+.|.+||++++...+
T Consensus 144 ~~~p~~EsLkdt~~Rv~Pyw~~~I~p~l~~Gk~VlI~AHGNSlRaLiK~L~~iSd~dI~~l~IPtg~Plvyeld~~l~~~ 223 (230)
T COG0588 144 GGLPLTESLKDTVERVLPYWEDDIAPNLKSGKNVLIVAHGNSLRALIKYLEGISDEDILDLNIPTGIPLVYELDKNLKVI 223 (230)
T ss_pred cCCCccchHHHHHHHhhHHHHHHhhHHHhCCCeEEEEecchhHHHHHHHHhCCCHHHhhhcccCCCCcEEEEECCCCcCc
Confidence 44567799999999999999999999988999999999999999999999999999999999999999999999999888
Q ss_pred eeecccC
Q psy11844 213 VSMKFLG 219 (241)
Q Consensus 213 ~~~~~~~ 219 (241)
..+ |++
T Consensus 224 ~~~-yL~ 229 (230)
T COG0588 224 SAY-YLG 229 (230)
T ss_pred ccc-ccC
Confidence 873 654
No 14
>PRK03482 phosphoglycerate mutase; Provisional
Probab=99.57 E-value=1.5e-14 Score=124.79 Aligned_cols=92 Identities=20% Similarity=0.191 Sum_probs=78.4
Q ss_pred ccCCCCCCCCHHHHHHhHHHHHHhhccccccCCCeEEEEecchhHHHHHHHhhCCChhhhhcccCCCcccEEEEEcCC--
Q psy11844 131 ISEEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMSDEAIMGLNLPTGIPFVYELDEN-- 208 (241)
Q Consensus 131 ~a~~~pgGESl~~~~~Rv~~~~~~~i~~~~~~g~~VLVVsHGgvIrall~~llg~~~e~~~~~~i~n~s~s~ie~~~~-- 208 (241)
....+|+|||+.++.+|+.+++++++. . +++++|||||||++|++++++++|.+.+..+++.++||++++++++++
T Consensus 112 ~~~~~p~gEs~~~~~~Rv~~~l~~~~~-~-~~~~~vliVsHg~~i~~l~~~l~~~~~~~~~~~~~~n~sis~~~~~~~~~ 189 (215)
T PRK03482 112 VDGRIPEGESMQELSDRMHAALESCLE-L-PQGSRPLLVSHGIALGCLVSTILGLPAWAERRLRLRNCSISRVDYQESPW 189 (215)
T ss_pred CccCCCCCccHHHHHHHHHHHHHHHHH-h-CCCCeEEEEeCcHHHHHHHHHHhCCChhhhhccCCCCcEEEEEEEeCCcc
Confidence 356789999999999999999999543 3 567899999999999999999999999999999999999999999753
Q ss_pred --CCeeeeecccCCHHHHHH
Q psy11844 209 --LKPVVSMKFLGDEETVKK 226 (241)
Q Consensus 209 --~~~l~~~~~~~d~~~l~~ 226 (241)
..... ...||.+||++
T Consensus 190 ~~~~~~~--~~~n~~~hl~~ 207 (215)
T PRK03482 190 LASGWVV--ETAGDVSHLDA 207 (215)
T ss_pred ccceEEE--EeeCChhhhCc
Confidence 23333 46899999974
No 15
>PRK14118 gpmA phosphoglyceromutase; Provisional
Probab=99.57 E-value=1.3e-14 Score=127.11 Aligned_cols=82 Identities=52% Similarity=0.950 Sum_probs=71.8
Q ss_pred CCCCCCCCHHHHHHhHHHHHHhhccccccCCCeEEEEecchhHHHHHHHhhCCChhhhhcccCCCcccEEEEEcCCCCee
Q psy11844 133 EEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMSDEAIMGLNLPTGIPFVYELDENLKPV 212 (241)
Q Consensus 133 ~~~pgGESl~~~~~Rv~~~~~~~i~~~~~~g~~VLVVsHGgvIrall~~llg~~~e~~~~~~i~n~s~s~ie~~~~~~~l 212 (241)
..+|+|||+.++.+|+.++|++++.+..+++++|||||||++||+++++++|++.+.+|++.++|+++++++++++...+
T Consensus 143 ~~~p~GEs~~~~~~Rv~~~l~~~~~~~~~~~~~vlvVsHggvir~ll~~~l~~~~~~~~~~~i~~~s~~~~~~~~~~~~~ 222 (227)
T PRK14118 143 DVVPDAENLKVTLERVLPFWEDQIAPALLSGKRVLVAAHGNSLRALAKHIEGISDADIMDLEIPTGQPLVYKLDDNLKVV 222 (227)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhhhhcCCCeEEEEeCHHHHHHHHHHHhCCCHHHHhcccCCCCceEEEEECCCCCcc
Confidence 45799999999999999999985542224678999999999999999999999999999999999999999998886665
Q ss_pred ee
Q psy11844 213 VS 214 (241)
Q Consensus 213 ~~ 214 (241)
..
T Consensus 223 ~~ 224 (227)
T PRK14118 223 EK 224 (227)
T ss_pred cc
Confidence 53
No 16
>PRK13462 acid phosphatase; Provisional
Probab=99.55 E-value=1.3e-14 Score=124.99 Aligned_cols=86 Identities=15% Similarity=0.173 Sum_probs=73.7
Q ss_pred CCCCCCCHHHHHHhHHHHHHhhccccccCCCeEEEEecchhHHHHHHHhhCCChhhhhcccCCCcccEEEEEcCCCCeee
Q psy11844 134 EFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMSDEAIMGLNLPTGIPFVYELDENLKPVV 213 (241)
Q Consensus 134 ~~pgGESl~~~~~Rv~~~~~~~i~~~~~~g~~VLVVsHGgvIrall~~llg~~~e~~~~~~i~n~s~s~ie~~~~~~~l~ 213 (241)
.+|+|||+.++++|+..+++++ ..+ +++++|||||||++||++++++++.+++.+|++.++|+++++++++++...+.
T Consensus 112 ~~p~gES~~~~~~Rv~~~l~~i-~~~-~~~~~vliVsHg~vir~ll~~~l~~~~~~~~~~~~~~~s~s~~~~~~~~~~~~ 189 (203)
T PRK13462 112 GCPGGESVAQVNERADRAVALA-LEH-MESRDVVFVSHGHFSRAVITRWVELPLAEGSRFAMPTASIAICGFEHGVRQLS 189 (203)
T ss_pred CCCCCccHHHHHHHHHHHHHHH-HHh-CCCCCEEEEeCCHHHHHHHHHHhCCCHHHhhhcccCCceEEEEEeeCCceEEE
Confidence 3489999999999999999994 434 56789999999999999999999999999999999999999999977655544
Q ss_pred eecccCCHHHH
Q psy11844 214 SMKFLGDEETV 224 (241)
Q Consensus 214 ~~~~~~d~~~l 224 (241)
.+|+.+|+
T Consensus 190 ---~~~~~~~~ 197 (203)
T PRK13462 190 ---ALGLTGHP 197 (203)
T ss_pred ---eeccCCCC
Confidence 56776653
No 17
>TIGR03848 MSMEG_4193 probable phosphomutase, MSMEG_4193 family. A three-gene system broadly conserved among the Actinobacteria includes MSMEG_4193 and homologs, a subgroup among the larger phosphoglycerate mutase family protein (pfam00300). Another member of the trio is a probable kinase, related to phosphatidylinositol kinases; that context supports the hypothesis that this protein acts as a phosphomutase.
Probab=99.54 E-value=2.5e-14 Score=122.50 Aligned_cols=98 Identities=12% Similarity=0.037 Sum_probs=78.4
Q ss_pred HHHHHhh-hccCCCCCCCCHHHHHHhHHHHHHhhccc---cccCCCeEEEEecchhHHHHHHHhhCCChhhhhcccCCCc
Q psy11844 123 MVAAWLQ-IISEEFPMFESLKLTIERTLPYWNNVIVP---QLKEGKKILIAAHGNSLRGIVKHLDNMSDEAIMGLNLPTG 198 (241)
Q Consensus 123 ~~~aW~d-p~a~~~pgGESl~~~~~Rv~~~~~~~i~~---~~~~g~~VLVVsHGgvIrall~~llg~~~e~~~~~~i~n~ 198 (241)
.+..|.. +....+|+|||+.++.+|+.++++++..+ +.+++++|||||||++||+++++++|.+++.+|++.++||
T Consensus 100 ~~~~~~~~~~~~~~p~gEs~~~~~~R~~~~l~~~~~~~~~~~~~~~~vliVsHg~~ir~ll~~~lg~~~~~~~~~~~~n~ 179 (204)
T TIGR03848 100 LWPVVQAHPSAAVFPGGESLAQVQARAVAAVREHDARLAAEHGPDAVWVACSHGDVIKSVLADALGMHLDLFQRIVVDPC 179 (204)
T ss_pred HHHHHhcCcccCCCCCCCCHHHHHHHHHHHHHHHHHHhhhccCCCCEEEEEeCChHHHHHHHHHhCCCHHHhheeeeCCC
Confidence 3455653 55677899999999999999999985432 1135678999999999999999999999999999999999
Q ss_pred ccEEEEEcCCCCeeeeecccCCHHH
Q psy11844 199 IPFVYELDENLKPVVSMKFLGDEET 223 (241)
Q Consensus 199 s~s~ie~~~~~~~l~~~~~~~d~~~ 223 (241)
++++++++++...+. .+|+..|
T Consensus 180 sit~l~~~~~~~~~~---~~n~~~~ 201 (204)
T TIGR03848 180 SVSVVRYTPLRPFVL---RVNDTGG 201 (204)
T ss_pred eEEEEEEeCCceEEE---Eeecccc
Confidence 999999977654433 4566543
No 18
>PRK07238 bifunctional RNase H/acid phosphatase; Provisional
Probab=99.54 E-value=2e-14 Score=133.97 Aligned_cols=106 Identities=16% Similarity=0.188 Sum_probs=89.3
Q ss_pred hcccCCHHHHHHHhhhccCCCCCCCCHHHHHHhHHHHHHhhccccccCCCeEEEEecchhHHHHHHHhhCCChhhhhccc
Q psy11844 115 FMQPTSVYMVAAWLQIISEEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMSDEAIMGLN 194 (241)
Q Consensus 115 ~i~~r~Pe~~~aW~dp~a~~~pgGESl~~~~~Rv~~~~~~~i~~~~~~g~~VLVVsHGgvIrall~~llg~~~e~~~~~~ 194 (241)
.+.+++|+.+..|.+.+...+|+|||+.++.+|+.++++++.. + +++++|||||||++||+++++++|.+.+.++++.
T Consensus 266 ei~~~~p~~~~~w~~~~~~~~p~gEs~~~~~~Rv~~~l~~l~~-~-~~~~~vlvVtHg~~ir~ll~~~l~~~~~~~~~~~ 343 (372)
T PRK07238 266 EAAERDPELHRAWLADTSVAPPGGESFDAVARRVRRARDRLIA-E-YPGATVLVVSHVTPIKTLLRLALDAGPGVLYRLH 343 (372)
T ss_pred HHHHHCHHHHHHHHhCCCCCCcCCCCHHHHHHHHHHHHHHHHH-H-CCCCeEEEEEChHHHHHHHHHHhCCCHHHhhhcc
Confidence 3446788888899864467789999999999999999999443 3 5678999999999999999999999999999999
Q ss_pred CCCcccEEEEEcCCCCeeeeecccCCHHHH
Q psy11844 195 LPTGIPFVYELDENLKPVVSMKFLGDEETV 224 (241)
Q Consensus 195 i~n~s~s~ie~~~~~~~l~~~~~~~d~~~l 224 (241)
++|++++++++++++.... ..+||.+||
T Consensus 344 ~~~~~~s~l~~~~~~~~~~--~~~n~~~hl 371 (372)
T PRK07238 344 LDLASLSIAEFYPDGPASV--RLVNDTSHL 371 (372)
T ss_pred cCCceEEEEEEECCCceEE--EEecCCCCC
Confidence 9999999999976554322 368888886
No 19
>PRK01295 phosphoglyceromutase; Provisional
Probab=99.48 E-value=1.6e-13 Score=118.49 Aligned_cols=97 Identities=37% Similarity=0.546 Sum_probs=78.3
Q ss_pred HhcccCCHHHHHH-HhhhccCCCCCCCCHHHHHHhHHHHH-HhhccccccCCCeEEEEecchhHHHHHHHhhCCChhhhh
Q psy11844 114 FFMQPTSVYMVAA-WLQIISEEFPMFESLKLTIERTLPYW-NNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMSDEAIM 191 (241)
Q Consensus 114 ~~i~~r~Pe~~~a-W~dp~a~~~pgGESl~~~~~Rv~~~~-~~~i~~~~~~g~~VLVVsHGgvIrall~~llg~~~e~~~ 191 (241)
-.+++++|+.... |.++....+|+|||+.|+.+|+.+++ +. +.++..++++|||||||++||+++++++++|.+.+|
T Consensus 100 ~e~~~~~~~~~~~~~~~~~~~~~p~GES~~~~~~Rv~~~~~~~-i~~~~~~~~~vliVtHg~~ir~l~~~~l~~~~~~~~ 178 (206)
T PRK01295 100 DDARAKWGEEQVHIWRRSYDVPPPGGESLKDTGARVLPYYLQE-ILPRVLRGERVLVAAHGNSLRALVMVLDGLTPEQIL 178 (206)
T ss_pred HHHHHHchHHHHHHhhcccCCCCcCCCCHHHHHHHHHHHHHHH-HHHhccCCCeEEEEcChHHHHHHHHHHhCCCHHHHh
Confidence 3456777765544 55555788999999999999999975 55 433324678999999999999999999999999999
Q ss_pred cccCCCcccEEEEEcCCCCe
Q psy11844 192 GLNLPTGIPFVYELDENLKP 211 (241)
Q Consensus 192 ~~~i~n~s~s~ie~~~~~~~ 211 (241)
.+.++|+++.++.+++....
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~ 198 (206)
T PRK01295 179 KLELATGVPIVYRLNADSTV 198 (206)
T ss_pred hcCCCCCCcEEEEecCCCCc
Confidence 99999999989888664443
No 20
>COG0406 phoE Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]
Probab=99.46 E-value=2.7e-13 Score=115.87 Aligned_cols=94 Identities=22% Similarity=0.273 Sum_probs=82.8
Q ss_pred HhcccCCHHHHHHHh-hhccCCCCCCCCHHHHHHhHHHHHHhhccccccCCCeEEEEecchhHHHHHHHhhCCChhhhhc
Q psy11844 114 FFMQPTSVYMVAAWL-QIISEEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMSDEAIMG 192 (241)
Q Consensus 114 ~~i~~r~Pe~~~aW~-dp~a~~~pgGESl~~~~~Rv~~~~~~~i~~~~~~g~~VLVVsHGgvIrall~~llg~~~e~~~~ 192 (241)
-++.+++|..+..|. ++..+.+|+|||+.++.+|+.++++++.. + +++++|||||||++||+++++++|++....++
T Consensus 97 ~e~~~~~p~~~~~~~~~~~~~~~~~gEs~~~~~~R~~~~~~~~~~-~-~~~~~vlvVsHg~~ir~l~~~~~~~~~~~~~~ 174 (208)
T COG0406 97 DELAEEPPEELAAWLADPYLAPPPGGESLADVSKRVVAALAELLR-S-PPGNNVLVVSHGGVIRALLAYLLGLDLEELWR 174 (208)
T ss_pred HHHHHhCHHHHHHHhcCccccCCCCCCCHHHHHHHHHHHHHHHHH-h-cCCCeEEEEEChHHHHHHHHHhcCCChhhHHh
Confidence 345788999999998 46778888999999999999999999443 4 45558999999999999999999999999999
Q ss_pred ccCCCcccEEEEEcCCC
Q psy11844 193 LNLPTGIPFVYELDENL 209 (241)
Q Consensus 193 ~~i~n~s~s~ie~~~~~ 209 (241)
+.++|+++++++++++.
T Consensus 175 ~~~~~~si~~l~~~~~~ 191 (208)
T COG0406 175 LRLDNASVTVLEFDDGR 191 (208)
T ss_pred cCCCCceEEEEEeeCCC
Confidence 99999999999998775
No 21
>TIGR03162 ribazole_cobC alpha-ribazole phosphatase. Members of this protein family include the known CobC protein of Salmonella and Eschichia coli species, and homologous proteins found in cobalamin biosynthesis regions in other bacteria. This protein is alpha-ribazole phosphatase (EC 3.1.3.73) and, like many phosphatases, can be closely related in sequence to other phosphatases with different functions. Close homologs excluded from this model include proteins with duplications, so this model is built in -g mode to suppress hits to those proteins.
Probab=99.44 E-value=2.5e-13 Score=113.00 Aligned_cols=85 Identities=20% Similarity=0.306 Sum_probs=72.4
Q ss_pred cccCCHHHHHHHhh-hccCCCCCCCCHHHHHHhHHHHHHhhccccccCCCeEEEEecchhHHHHHHHhhCCChhhhhccc
Q psy11844 116 MQPTSVYMVAAWLQ-IISEEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMSDEAIMGLN 194 (241)
Q Consensus 116 i~~r~Pe~~~aW~d-p~a~~~pgGESl~~~~~Rv~~~~~~~i~~~~~~g~~VLVVsHGgvIrall~~llg~~~e~~~~~~ 194 (241)
+.+++| .+..|.+ +....+|+|||+.++.+|+.++++++.. + +++++|||||||++|++++++++|.+++..|++.
T Consensus 92 ~~~~~~-~~~~~~~~~~~~~~~~gEs~~~~~~R~~~~~~~l~~-~-~~~~~vlvVsHg~~i~~l~~~~~~~~~~~~~~~~ 168 (177)
T TIGR03162 92 IPEAYP-ELDAWAADWQHARPPGGESFADFYQRVSEFLEELLK-A-HEGDNVLIVTHGGVIRALLAHLLGLPLEQWWSFD 168 (177)
T ss_pred HHHhCH-HHHHHHhCcccCCCcCCCCHHHHHHHHHHHHHHHHH-h-CCCCeEEEEECHHHHHHHHHHHhCCCHHHHhccc
Confidence 345666 5667774 5567889999999999999999999544 3 4678999999999999999999999999999999
Q ss_pred CCCcccEEE
Q psy11844 195 LPTGIPFVY 203 (241)
Q Consensus 195 i~n~s~s~i 203 (241)
++||+++++
T Consensus 169 ~~n~~i~~l 177 (177)
T TIGR03162 169 VEYGSITLI 177 (177)
T ss_pred cCCeeEEeC
Confidence 999998763
No 22
>KOG0235|consensus
Probab=99.31 E-value=4.5e-12 Score=110.53 Aligned_cols=96 Identities=55% Similarity=0.851 Sum_probs=81.7
Q ss_pred HHHhhhccCCCCCCCCHHHHHHhHHHHHHhhccccccCCCeEEEEecchhHHHHHHHhhCCChhhhhcccCCCcccEEEE
Q psy11844 125 AAWLQIISEEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMSDEAIMGLNLPTGIPFVYE 204 (241)
Q Consensus 125 ~aW~dp~a~~~pgGESl~~~~~Rv~~~~~~~i~~~~~~g~~VLVVsHGgvIrall~~llg~~~e~~~~~~i~n~s~s~ie 204 (241)
+++.+.....+|.|||+.++.+|+.|+|++.++++..+|++||||+||+++|+++.++.|++.+.+....++++.+.+++
T Consensus 118 ~r~~~~~~~~~p~~EsL~~~~~R~~~~~~e~i~~~~~~gk~Vli~aHGnsLR~i~~~l~g~s~~~i~~~~~~t~vp~v~~ 197 (214)
T KOG0235|consen 118 PRLSDLDEIPLPDGESLKDCLDRLLPFWNEEIAKESKEGKNVLIVAHGNSLRAIVKHLEGISDEAIKELNLPTGVPIVYE 197 (214)
T ss_pred hhhccCCcCCCCCCccHHHHHHHHHHHHHHhhhhhhcCCcEEEEEcCcHHHHHHHHHHhcCCHhhhhheecccCCceEEE
Confidence 33334345678899999999999999999989888778999999999999999999999999999999999999999999
Q ss_pred EcCCCCeeeeecccCC
Q psy11844 205 LDENLKPVVSMKFLGD 220 (241)
Q Consensus 205 ~~~~~~~l~~~~~~~d 220 (241)
++.+...+..+..++|
T Consensus 198 ld~~~~~~~~~~~lgd 213 (214)
T KOG0235|consen 198 LDKNKIPVKCRQFLGD 213 (214)
T ss_pred ccccccccccccccCC
Confidence 9876665444456665
No 23
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=99.19 E-value=4.5e-11 Score=119.54 Aligned_cols=92 Identities=11% Similarity=0.112 Sum_probs=78.6
Q ss_pred HHhcccCCHHHHHHHhh-hccCCCCCCCCHHHHH-HhHHHHHHhhccccccCCCeEEEEecchhHHHHHHHhhCC-----
Q psy11844 113 FFFMQPTSVYMVAAWLQ-IISEEFPMFESLKLTI-ERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNM----- 185 (241)
Q Consensus 113 ~~~i~~r~Pe~~~aW~d-p~a~~~pgGESl~~~~-~Rv~~~~~~~i~~~~~~g~~VLVVsHGgvIrall~~llg~----- 185 (241)
+-.+++++|+.+..|.+ +..+.+|+|||+.|+. .|+.++++++ .+ ..++|||||||++||++++++++.
T Consensus 529 ~~ei~~~~p~~~~~~~~d~~~~~~P~GES~~d~~~~R~~~~i~~l-~~---~~~~ilvVsHg~vir~ll~~~~~~~~~~~ 604 (664)
T PTZ00322 529 LSDVRRTMPNTLQSMKADPYYTAWPNGECIHQVFNARLEPHIHDI-QA---STTPVLVVSHLHLLQGLYSYFVTDGDNIV 604 (664)
T ss_pred HHHHHHhCcHHHHHHHhCCCcCCCCCCcCHHHHHHHHHHHHHHHH-Hc---cCCCEEEEeCcHHHHHHHHHHhcCCcccc
Confidence 34567889999999995 6678899999999976 7999999994 42 336899999999999999999995
Q ss_pred ChhhhhcccCCCcccEEEEEcCC
Q psy11844 186 SDEAIMGLNLPTGIPFVYELDEN 208 (241)
Q Consensus 186 ~~e~~~~~~i~n~s~s~ie~~~~ 208 (241)
++++.|.+.+++++++.+++.+.
T Consensus 605 ~~~~~~~~~i~~~~~~~i~~~~~ 627 (664)
T PTZ00322 605 APQNAYKIDIPFEHVIKIRMVGF 627 (664)
T ss_pred CcccCceeeccCCcEEEEEEecc
Confidence 78899999999999998888754
No 24
>PTZ00122 phosphoglycerate mutase; Provisional
Probab=99.19 E-value=4.5e-11 Score=109.14 Aligned_cols=92 Identities=16% Similarity=0.111 Sum_probs=72.6
Q ss_pred CCCCCCCHHHHHHhHHHHHHhhcccccc-CCCeEEEEecchhHHHHHHHhhCCChhhhhcccCCCcccEEEEEcCCCCee
Q psy11844 134 EFPMFESLKLTIERTLPYWNNVIVPQLK-EGKKILIAAHGNSLRGIVKHLDNMSDEAIMGLNLPTGIPFVYELDENLKPV 212 (241)
Q Consensus 134 ~~pgGESl~~~~~Rv~~~~~~~i~~~~~-~g~~VLVVsHGgvIrall~~llg~~~e~~~~~~i~n~s~s~ie~~~~~~~l 212 (241)
.+|++|+ .+..+|+..+++++..+... +++++||||||++||++++.++++|++.++++.++||+++++++++++...
T Consensus 203 ~~~gee~-~~~~~Rv~~al~~i~~r~~~~~~~~vLVVsHGgvIR~ll~~lLglp~~~~~~~~~~N~sit~l~~~~~g~~~ 281 (299)
T PTZ00122 203 KPTIEEI-LEDMKRIEAAFEKYFHRPVEDEDSVEIIVCHGNVIRYLVCRALQLPPEAWLRLSLYNCGITWIVISSEGHVS 281 (299)
T ss_pred CCCcchH-HHHHHHHHHHHHHHHHhcccCCCCeEEEEeCChHHHHHHHHHhCcCHHHHhhccCCCceEEEEEEeCCCcEE
Confidence 3455555 66799999999995432211 245689999999999999999999999999999999999999997655543
Q ss_pred eeecccCCHHHHHHHH
Q psy11844 213 VSMKFLGDEETVKKAM 228 (241)
Q Consensus 213 ~~~~~~~d~~~l~~~~ 228 (241)
. ..+||..||+.++
T Consensus 282 l--~~~n~~~HL~~~~ 295 (299)
T PTZ00122 282 L--SGFGSVGHLPPDM 295 (299)
T ss_pred E--EEEeCCCCCChhh
Confidence 3 3679999997654
No 25
>PF00300 His_Phos_1: Histidine phosphatase superfamily (branch 1); InterPro: IPR013078 The histidine phosphatase superfamily is so named because catalysis centres on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The relationship between the two branches is not evident by (PSI-)BLAST but is clear from more sensitive sequence searches and structural comparisons []. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members. Phosphoglycerate mutase (5.4.2.1 from EC) (PGAM) and bisphosphoglycerate mutase (5.4.2.4 from EC) (BPGM) are structurally related enzymes that catalyse reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate [, , ]. Both enzymes can catalyse three different reactions with different specificities, the isomerization of 2-phosphoglycerate (2-PGA) to 3-phosphoglycerate (3-PGA) with 2,3-diphosphoglycerate (2,3-DPG) as the primer of the reaction, the synthesis of 2,3-DPG from 1,3-DPG with 3-PGA as a primer and the degradation of 2,3-DPG to 3-PGA (phosphatase 3.1.3.13 from EC activity). In mammals, PGAM is a dimeric protein with two isoforms, the M (muscle) and B (brain) forms. In yeast, PGAM is a tetrameric protein. BPGM is a dimeric protein and is found mainly in erythrocytes where it plays a major role in regulating haemoglobin oxygen affinity as a consequence of controlling 2,3-DPG concentration. The catalytic mechanism of both PGAM and BPGM involves the formation of a phosphohistidine intermediate []. A number of other proteins including, the bifunctional enzyme 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase [] that catalyses both the synthesis and the degradation of fructose-2,6-bisphosphate and bacterial alpha-ribazole-5'-phosphate phosphatase, which is involved in cobalamin biosynthesis, contain this domain [].; PDB: 1C80_A 1C7Z_B 1TIP_B 1C81_A 1FBT_A 1RII_B 3OI7_B 3LL4_A 3LG2_B 3F3K_B ....
Probab=98.54 E-value=6.1e-08 Score=77.74 Aligned_cols=61 Identities=21% Similarity=0.279 Sum_probs=48.4
Q ss_pred ccCCHHHHHHHhh-hccCCCCCCCCHHHHHHhHHHHHHhhccccccCCCeEEEEecchhHHHH
Q psy11844 117 QPTSVYMVAAWLQ-IISEEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGI 178 (241)
Q Consensus 117 ~~r~Pe~~~aW~d-p~a~~~pgGESl~~~~~Rv~~~~~~~i~~~~~~g~~VLVVsHGgvIral 178 (241)
...+|.....|.+ +....+|+|||+.+++.|+..+++.+.. ...++++|+|||||++||++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~Es~~~~~~R~~~~~~~l~~-~~~~~~~vliVsHg~~i~~~ 158 (158)
T PF00300_consen 97 EEKFPDEFEAWWSDPYFYRPPGGESWEDFQQRVKQFLDELIA-YKRPGENVLIVSHGGFIRAL 158 (158)
T ss_dssp HHHHHHHHHHHHHHTSSCGSTTSHHHHHHHHHHHHHHHHHHH-HHHTTSEEEEEE-HHHHHHH
T ss_pred HhhhhcccchhhccccccccccCCCHHHHHHHHHHHHHHHHH-HhCCCCEEEEEecHHHHHhC
Confidence 3444566777775 6678889999999999999999999553 12578999999999999985
No 26
>KOG0234|consensus
Probab=98.53 E-value=1.9e-07 Score=88.82 Aligned_cols=111 Identities=18% Similarity=0.097 Sum_probs=91.2
Q ss_pred HHHHHHHhcccCCHHHHHHHh-hhccCCCCCCCCHHHHHHhHHHHHHhhccccccCCCeEEEEecchhHHHHHHHhhCCC
Q psy11844 108 AVMLLFFFMQPTSVYMVAAWL-QIISEEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMS 186 (241)
Q Consensus 108 ~~~~l~~~i~~r~Pe~~~aW~-dp~a~~~pgGESl~~~~~Rv~~~~~~~i~~~~~~g~~VLVVsHGgvIrall~~llg~~ 186 (241)
+.-.++..++.++|+++..-. +...++.|+|||+.|+..|..|.+.+ +.++ .+|||++|-.+||+++.++++.+
T Consensus 324 ~~g~t~eeI~~~~p~e~~~r~~dky~yry~~gESy~D~v~RlePvImE-lEr~----~~Vlvi~Hqavircll~Yf~~~~ 398 (438)
T KOG0234|consen 324 CEGLTYEEIETNYPEEFALRDKDKYRYRYPGGESYSDLVQRLEPVIME-LERQ----ENVLVITHQAVIRCLLAYFLNCS 398 (438)
T ss_pred cccccHHHHHHhCchhhhhccCCcceeecCCCCCHHHHHHhhhhHhHh-hhhc----ccEEEEecHHHHHHHHHHHhcCC
Confidence 445567888899999988877 46789999999999999999999988 5533 24999999999999999999999
Q ss_pred hhhhhcccCCCcccEEEEEcCCCCeeeeecccCCHHHH
Q psy11844 187 DEAIMGLNLPTGIPFVYELDENLKPVVSMKFLGDEETV 224 (241)
Q Consensus 187 ~e~~~~~~i~n~s~s~ie~~~~~~~l~~~~~~~d~~~l 224 (241)
.++...+.++-..+..+....-+..+.. ..++|+.|.
T Consensus 399 ~~e~p~l~~plhtv~~l~~~~y~~~~e~-~~~~~~a~t 435 (438)
T KOG0234|consen 399 PVELPYLTVPLHTVIKLTPDAYGTTVES-IRLNDTANT 435 (438)
T ss_pred HhhcccccccceeEEEEeeccccceeEE-eeccccccc
Confidence 9999999988888877777665555555 467776653
No 27
>smart00855 PGAM Phosphoglycerate mutase family. Phosphoglycerate mutase (PGAM) and bisphosphoglycerate mutase (BPGM) are structurally related enzymes that catalyse reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate PUBMED:2847721, PUBMED:2831102, PUBMED:10958932. Both enzymes can catalyse three different reactions with different specificities, the isomerization of 2-phosphoglycerate (2-PGA) to 3-phosphoglycerate (3-PGA) with 2,3-diphosphoglycerate (2,3-DPG) as the primer of the reaction, the synthesis of 2,3-DPG from 1,3-DPG with 3-PGA as a primer and the degradation of 2,3-DPG to 3-PGA (phosphatase activity). In mammals, PGAM is a dimeric protein with two isoforms, the M (muscle) and B (brain) forms. In yeast, PGAM is a tetrameric protein.
Probab=98.47 E-value=1.9e-07 Score=75.98 Aligned_cols=50 Identities=28% Similarity=0.423 Sum_probs=40.0
Q ss_pred hhccCCCCCCCCHHHHHHhHHHHHHhhccccccCCCeEEEEecchhHHHH
Q psy11844 129 QIISEEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGI 178 (241)
Q Consensus 129 dp~a~~~pgGESl~~~~~Rv~~~~~~~i~~~~~~g~~VLVVsHGgvIral 178 (241)
++....+|+|||+.++..|+.++++++..+...++++|||||||++||++
T Consensus 106 ~~~~~~~~~gEs~~~~~~Rv~~~~~~i~~~~~~~~~~vlvVtHg~~ir~~ 155 (155)
T smart00855 106 DWLGAAPPGGESLADVVERLVRALEELIATHDKSGQNVLIVSHGGVIRAL 155 (155)
T ss_pred ccCCCCCcCCCCHHHHHHHHHHHHHHHHHhcccCCCeEEEEECCcccccC
Confidence 34567789999999999999999999543211256899999999999864
No 28
>cd07067 HP_PGM_like Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction. Subgroup of the catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This subgroup contains cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example, F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent His-to-Asp phos
Probab=98.42 E-value=6.8e-07 Score=72.16 Aligned_cols=67 Identities=43% Similarity=0.650 Sum_probs=57.2
Q ss_pred CCCHHHHHHhHHHHHHhhccccccCCCeEEEEecchhHHHHHHHhhCCChhhhhcccCCCcccEEEEEcCC
Q psy11844 138 FESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMSDEAIMGLNLPTGIPFVYELDEN 208 (241)
Q Consensus 138 GESl~~~~~Rv~~~~~~~i~~~~~~g~~VLVVsHGgvIrall~~llg~~~e~~~~~~i~n~s~s~ie~~~~ 208 (241)
-+.+.| +|+.++++++.. + +++++|+|||||++|+++++++++.+.+.+|.+.++|++++.++++++
T Consensus 78 ~~~L~e--~R~~~~~~~l~~-~-~~~~~iliV~H~~~i~~~~~~l~~~~~~~~~~~~~~~~s~~~~~~~~~ 144 (153)
T cd07067 78 DPRLRE--ARVLPALEELIA-P-HDGKNVLIVSHGGVLRALLAYLLGLSDEDILRLNLPNGSISVLELDEN 144 (153)
T ss_pred CccchH--HHHHHHHHHHHH-h-CCCCeEEEEeChHHHHHHHHHHhCCCHHHHHhcCCCCceEEEEEEeCC
Confidence 344555 899999998443 3 367899999999999999999999999999999999999999998764
No 29
>cd07040 HP Histidine phosphatase domain found in a functionally diverse set of proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction. Catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This set of proteins includes cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, histidine acid phosphatases, phytases, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent Hi
Probab=98.08 E-value=1.3e-05 Score=63.94 Aligned_cols=63 Identities=40% Similarity=0.655 Sum_probs=54.0
Q ss_pred HhHHHHHHhhccccccCCCeEEEEecchhHHHHHHHhhCCChhhhhcccCCCcccEEEEEcCC
Q psy11844 146 ERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMSDEAIMGLNLPTGIPFVYELDEN 208 (241)
Q Consensus 146 ~Rv~~~~~~~i~~~~~~g~~VLVVsHGgvIrall~~llg~~~e~~~~~~i~n~s~s~ie~~~~ 208 (241)
+|+.+.+++++.+...+++++++||||++|+.+++++++.+....+++.+++++...++++.+
T Consensus 82 ~r~~~~~~~~~~~~~~~~~~iliv~H~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (153)
T cd07040 82 ARVLNALLELLARHLLDGKNVLIVSHGGTIRALLAALLGLSDEEILSLNLPNGSILVLELDEC 144 (153)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHhCcCHHHhccccCCCCceEEEEEcCC
Confidence 899999998544211257899999999999999999999999999999999999999998754
No 30
>PF00822 PMP22_Claudin: PMP-22/EMP/MP20/Claudin family; InterPro: IPR004031 Several vertebrate small integral membrane glycoproteins are evolutionary related [, , ], including eye lens specific membrane protein 20 (MP20 or MP19); epithelial membrane protein-1 (EMP-1), which is also known as tumor-associated membrane protein (TMP) or as squamous cell-specific protein Cl-20; epithelial membrane protein-2 (EMP-2), which is also known as XMP; epithelial membrane protein-3 (EMP-3), also known as YMP; and peripheral myelin protein 22 (PMP-22), which is expressed in many tissues but mainly by Schwann cells as a component of myelin of the peripheral nervous system (PNS). PMP-22 probably plays a role both in myelinization and in cell proliferation. Mutations affecting PMP-22 are associated with hereditary motor and sensory neuropathies such as Charcot-Marie-Tooth disease type 1A (CMT-1A) in human or the trembler phenotype in mice. The proteins of this family are about 160 to 173 amino acid residues in size, and contain four transmembrane segments. PMP-22, EMP-1, -2 and -3 are highly similar, while MP20 is more distantly related. This family also includes the claudins, which are components of tight junctions.; GO: 0016020 membrane
Probab=97.72 E-value=0.00011 Score=60.32 Aligned_cols=77 Identities=21% Similarity=0.449 Sum_probs=57.4
Q ss_pred HHHHhhhccceeeccCCc---ceeeccccccccc-CCccccccccCcceeccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11844 38 LIVSVAFLTPEWIGIANK---GRLGLWSSCEFDV-NGFEECTGKFAEFMEISNAAFKISTVLCLVSVTLALVTIAVMLLF 113 (241)
Q Consensus 38 i~~~v~f~~p~Wi~~~~~---~~fgl~~~C~~~~-~~~~~C~g~~~~f~~ips~a~~~~~~~~~~~~~l~~~~~~~~~l~ 113 (241)
+..+++...|+|.-.+.. .+.|||+.|..+. .+..+| ..++++...|. ..|++-.+..+|+++.++.++..+..
T Consensus 17 ~~liva~~~~~W~~~~~~~~~~~~GLW~~C~~~~~~~~~~c-~~~~~~~~~~~-~~~a~r~l~i~s~il~~l~~~l~~~g 94 (166)
T PF00822_consen 17 ALLIVATATPYWRVSNVSGQSRWSGLWRECIQQSCTGSTQC-DSYDSFLSLPG-YLQAARALMILSIILGFLGLILALFG 94 (166)
T ss_pred HHHHHHcCchHheEecCcCccceeCCccccCCcCcCceecc-cccCcccchhH-HHHHHHHHhHHHHHHHHHHHHHHHhc
Confidence 356677888899987665 4999999998765 455689 66788777664 58999999989888877666555544
Q ss_pred Hhc
Q psy11844 114 FFM 116 (241)
Q Consensus 114 ~~i 116 (241)
.++
T Consensus 95 ~~~ 97 (166)
T PF00822_consen 95 LCC 97 (166)
T ss_pred ccc
Confidence 433
No 31
>KOG4609|consensus
Probab=97.52 E-value=0.00016 Score=63.54 Aligned_cols=78 Identities=18% Similarity=0.152 Sum_probs=60.5
Q ss_pred HhHHHHHHhhcccc---ccCCCeEEEEecchhHHHHHHHhhCCChhhhhcccCCCcccEEEEEcCCCCeeeeecccCCHH
Q psy11844 146 ERTLPYWNNVIVPQ---LKEGKKILIAAHGNSLRGIVKHLDNMSDEAIMGLNLPTGIPFVYELDENLKPVVSMKFLGDEE 222 (241)
Q Consensus 146 ~Rv~~~~~~~i~~~---~~~g~~VLVVsHGgvIrall~~llg~~~e~~~~~~i~n~s~s~ie~~~~~~~l~~~~~~~d~~ 222 (241)
.|+..++.+..-+. -..+..-|||+|++|||-++|..+++|++.+.++.+.+|+++-+.+...+.... .++||..
T Consensus 197 aRIEaafRryfhRA~p~QeedSy~liV~HaNVIRY~icRALq~PpegWlR~nlnh~SiTWlti~PsG~vsv--r~lGdsG 274 (284)
T KOG4609|consen 197 ARIEAAFRRYFHRASPSQEEDSYELIVCHANVIRYFICRALQFPPEGWLRMNLNHCSITWLTISPSGHVSV--RSLGDSG 274 (284)
T ss_pred hHHHHHHHHHHhhcCcccccccEEEEEeecchhhhhhhhhhcCCcchhheecccCcceEEEEEccCCcEEE--EeccccC
Confidence 46666555433222 023446799999999999999999999999999999999999998887777655 4899977
Q ss_pred HHH
Q psy11844 223 TVK 225 (241)
Q Consensus 223 ~l~ 225 (241)
++.
T Consensus 275 fmP 277 (284)
T KOG4609|consen 275 FMP 277 (284)
T ss_pred CCC
Confidence 654
No 32
>KOG3734|consensus
Probab=96.25 E-value=0.0083 Score=54.40 Aligned_cols=52 Identities=21% Similarity=0.227 Sum_probs=44.3
Q ss_pred CCCCCCHHHHHHhHHHHHHhhccccccCCCeEEEEecchhHHHHHHHhhCCChh
Q psy11844 135 FPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMSDE 188 (241)
Q Consensus 135 ~pgGESl~~~~~Rv~~~~~~~i~~~~~~g~~VLVVsHGgvIrall~~llg~~~e 188 (241)
+-.+||.+++..|....+..++. + .+++++|||+||..+.+..+.+.|.+..
T Consensus 168 ~~~~es~e~~~~R~~~~~k~i~~-k-~~~~~lLIV~H~~sv~~~~~~l~~~~~~ 219 (272)
T KOG3734|consen 168 PRWGESLEDCNDRIQKVFKAIAD-K-YPNENLLIVAHGSSVDTCSAQLQGLPVR 219 (272)
T ss_pred ccccccHHHHHHHHHHHHHHHHH-h-cCCCceEEEeccchHHHHHHHhcCCCce
Confidence 45789999999999999999554 5 6788899999999999999999885544
No 33
>PF07062 Clc-like: Clc-like; InterPro: IPR010761 Clc proteins are a nine-member gene family of chloride channels that have diverse roles in the plasma membrane and in intracellular organelles, especially membrane excitability and the maintenance of osmotic balance [, ]. This family contains a number of Clc-like proteins that are approximately 250 residues long and their homologues. ; GO: 0016021 integral to membrane
Probab=95.02 E-value=0.076 Score=46.57 Aligned_cols=84 Identities=21% Similarity=0.313 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHhhhccceeec-c-C---CcceeecccccccccC----------CccccccccCcce--ec------
Q psy11844 28 LWGIFTLCFALIVSVAFLTPEWIG-I-A---NKGRLGLWSSCEFDVN----------GFEECTGKFAEFM--EI------ 84 (241)
Q Consensus 28 lW~~~t~~~ai~~~v~f~~p~Wi~-~-~---~~~~fgl~~~C~~~~~----------~~~~C~g~~~~f~--~i------ 84 (241)
.=.++++.--+++.++.++|.|-- + + .--.-|||..|.+++. +...|.-+++.=. .+
T Consensus 6 ~s~vl~lig~~L~~~al~SPsWQvv~~~e~~~~h~hGLW~dC~~~~~~~~~~~~~~~~~~~C~ykFd~~~~~~y~~~~~~ 85 (211)
T PF07062_consen 6 FSFVLILIGLILTFIALFSPSWQVVNIREFRAYHQHGLWLDCQRPESHLLARDDDDEGPLHCTYKFDYDDEQNYDEKVDN 85 (211)
T ss_pred HHHHHHHHHHHHHHHHHcCCceEEEEecccCcEEecceeeecCCccccccchhcccCCCceEEEEcCccHHHHHHHHHhh
Confidence 334677777788999999999943 3 2 3468999999985433 2346755554111 01
Q ss_pred -------------cchhhHHHHH-HHHHHHHHHHHHHHHHH
Q psy11844 85 -------------SNAAFKISTV-LCLVSVTLALVTIAVML 111 (241)
Q Consensus 85 -------------ps~a~~~~~~-~~~~~~~l~~~~~~~~~ 111 (241)
-...|+.|+. ++.+|+++.++++++.+
T Consensus 86 ~~~~~~~~~~~~h~F~gWh~AvLil~~~s~lf~~lsi~~~i 126 (211)
T PF07062_consen 86 CDGNSNVGESETHCFFGWHKAVLILISFSMLFALLSICFGI 126 (211)
T ss_pred cccCCcccccccceehhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1245888776 67778887777776633
No 34
>PF13903 Claudin_2: PMP-22/EMP/MP20/Claudin tight junction
Probab=94.18 E-value=0.13 Score=41.65 Aligned_cols=84 Identities=17% Similarity=0.316 Sum_probs=52.5
Q ss_pred HHHHHHHhhhccceeeccC--Cc----------------ceeecccccccccCCccccccccCcceeccchhhHHHHHHH
Q psy11844 35 CFALIVSVAFLTPEWIGIA--NK----------------GRLGLWSSCEFDVNGFEECTGKFAEFMEISNAAFKISTVLC 96 (241)
Q Consensus 35 ~~ai~~~v~f~~p~Wi~~~--~~----------------~~fgl~~~C~~~~~~~~~C~g~~~~f~~ips~a~~~~~~~~ 96 (241)
+..++.++++.+|+|+--+ +. .+.|||+.|...... .- .+. -...| ...+++++|.
T Consensus 2 la~~L~~ia~~T~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~Glw~~c~~~~~~--~~-~~~--~~~~~-~~~~~~~~~~ 75 (172)
T PF13903_consen 2 LALILLIIAFGTPYWVVSDPRRTGFNCTESNNSVNFGLFSHSGLWRICFQREYD--SS-NRN--ETTNP-HWMRATIAFL 75 (172)
T ss_pred hHHHHHHHHHcCchHhEEeeeccCccccccccccccccccccCcceEeecCCcC--cc-cch--hhhhH-HHHHHHHHHH
Confidence 4567788999999999541 11 256999999754321 00 011 11122 2457777788
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCHHHH
Q psy11844 97 LVSVTLALVTIAVMLLFFFMQPTSVYMV 124 (241)
Q Consensus 97 ~~~~~l~~~~~~~~~l~~~i~~r~Pe~~ 124 (241)
.+|+++.+...++.+..++.++......
T Consensus 76 ~l~~~~~~~a~~~~~~~~~~~~~~~~~~ 103 (172)
T PF13903_consen 76 ILGLLLLLFAFVFALIGFCKRSYTLYLF 103 (172)
T ss_pred HHHHHHHHHHHHHHHHHhhccccchhHH
Confidence 8899888888887777666666543333
No 35
>PRK06193 hypothetical protein; Provisional
Probab=92.32 E-value=0.34 Score=42.27 Aligned_cols=45 Identities=13% Similarity=0.116 Sum_probs=35.8
Q ss_pred CCCCCHHHHHHhHHHHHHhhccccccCCCeEEEEecchhHHHHHHHhhC
Q psy11844 136 PMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDN 184 (241)
Q Consensus 136 pgGESl~~~~~Rv~~~~~~~i~~~~~~g~~VLVVsHGgvIrall~~llg 184 (241)
|.+|+.+...+|+..++++ +. +++++||+|+|+..|+.+.-...+
T Consensus 132 ~~~~~~~~y~~~l~~~I~~-l~---~~~~~vLlVgHnp~i~~l~g~~~~ 176 (206)
T PRK06193 132 VPAERNALLKAGLRPLLTT-PP---DPGTNTVLVGHDDNLEAATGIYPE 176 (206)
T ss_pred CChhhHHHHHHHHHHHHhh-CC---CCCCeEEEEeCchHHHHHhCCCCc
Confidence 3568888888999999998 33 467899999999999888774443
No 36
>TIGR00249 sixA phosphohistidine phosphatase SixA.
Probab=92.11 E-value=0.74 Score=37.72 Aligned_cols=44 Identities=18% Similarity=0.118 Sum_probs=35.7
Q ss_pred CCCeEEEEecchhHHHHHHHhhCCChhhhhcccCCCcccEEEEEcCCC
Q psy11844 162 EGKKILIAAHGNSLRGIVKHLDNMSDEAIMGLNLPTGIPFVYELDENL 209 (241)
Q Consensus 162 ~g~~VLVVsHGgvIrall~~llg~~~e~~~~~~i~n~s~s~ie~~~~~ 209 (241)
..++|+||+|+..+..++.++.+.+.. ...+++++..+++++.+
T Consensus 99 ~~~~vliVgH~P~i~~l~~~l~~~~~~----~~~~~~~~~~l~~~~~~ 142 (152)
T TIGR00249 99 GVASVLLVSHLPLVGYLVAELCPGENP----IMFTTGAIASLLWDESK 142 (152)
T ss_pred CCCEEEEEeCCCCHHHHHHHHhCCCCC----CcCcceeEEEEEEecCC
Confidence 457999999999999999999986432 45789999899997443
No 37
>PF06687 SUR7: SUR7/PalI family; InterPro: IPR009571 This family consists of several fungal-specific SUR7 proteins. Its activity regulates expression of RVS161, a homologue of human endophilin, suggesting a function for both in endocytosis [, ]. The protein carries four transmembrane domains and is thus likely to act as an anchoring protein for the eisosome to the plasma membrane. Eisosomes are the immobile protein complexes, that include the proteins Pil1 and Lsp1, which co-localise with sites of protein and lipid endocytosis at the plasma membrane. SUR7 protein may play a role in sporulation []. Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This family also includes PalI which is part of a pH signal transduction cascade. Based on the similarity of PalI to the yeast Rim9 meiotic signal transduction component it has been suggested that PalI might be a membrane sensor for ambient pH [].
Probab=85.24 E-value=4.7 Score=34.14 Aligned_cols=82 Identities=15% Similarity=0.335 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHhhhccce----eecc--------CC---------cceeeccccccc-ccCCcccccccc----Ccce--
Q psy11844 31 IFTLCFALIVSVAFLTPE----WIGI--------AN---------KGRLGLWSSCEF-DVNGFEECTGKF----AEFM-- 82 (241)
Q Consensus 31 ~~t~~~ai~~~v~f~~p~----Wi~~--------~~---------~~~fgl~~~C~~-~~~~~~~C~g~~----~~f~-- 82 (241)
++++...++.+++.+.+. ++.+ ++ --+||+|.||.+ +.....+|+.+- .+..
T Consensus 7 ~~~~~a~il~il~~i~~~~~~~~~~~l~~~~~~~s~~~~~~g~~~~y~~gl~g~C~~~~~~~~~~Cs~~~~~y~f~~~~~ 86 (212)
T PF06687_consen 7 LLSLAAFILLILALISGPSNSSVLKSLYFLKLDTSGLGISLGLPDFYRFGLWGYCEGNNGTNITSCSSPSPGYPFDPREI 86 (212)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCcccceEEEEEECCCCCccCCCCCeEEEEEEEEeeeCCCCCCCccCCCCCCCCCCHHHH
Confidence 455555555555555554 5544 11 168999999998 444456897521 1221
Q ss_pred -----------eccch----------hhHHHHHHHHHHHHHHHHHHHHHHH
Q psy11844 83 -----------EISNA----------AFKISTVLCLVSVTLALVTIAVMLL 112 (241)
Q Consensus 83 -----------~ips~----------a~~~~~~~~~~~~~l~~~~~~~~~l 112 (241)
.+|+. ..+...++..+|+++..+.++..+.
T Consensus 87 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ia~~~t~l~~~~~~~ 137 (212)
T PF06687_consen 87 LDSELNSLSDLGLPSSLRSALDYYNNLLKAMFILYPIAIVFTFLALILSGL 137 (212)
T ss_pred hcccchhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22321 3556667777777777777766333
No 38
>PF06653 Claudin_3: Tight junction protein, Claudin-like; InterPro: IPR009545 This family consists of several Caenorhabditis elegans specific proteins of unknown function.
Probab=82.97 E-value=6.7 Score=32.66 Aligned_cols=82 Identities=17% Similarity=0.287 Sum_probs=45.7
Q ss_pred HHHHHHHHHhhhccceeeccCCcceeecccccccccCCccccccccCcce-eccchhhHHHHHHHHHHHHHHHHHHHHHH
Q psy11844 33 TLCFALIVSVAFLTPEWIGIANKGRLGLWSSCEFDVNGFEECTGKFAEFM-EISNAAFKISTVLCLVSVTLALVTIAVML 111 (241)
Q Consensus 33 t~~~ai~~~v~f~~p~Wi~~~~~~~fgl~~~C~~~~~~~~~C~g~~~~f~-~ips~a~~~~~~~~~~~~~l~~~~~~~~~ 111 (241)
-+...+++.|+.++|.|+-+... - .+.|.|= -.+. +-|.+ +.++.+++-+++.+.++.+...+
T Consensus 12 i~i~~iL~~vgvFTp~W~~~~~~----~----------~~~~~GI-vP~~~~~~~W-~~~as~lm~is~~~~~i~i~~~~ 75 (163)
T PF06653_consen 12 ILIGFILNAVGVFTPCWITDSNY----K----------ISISIGI-VPYSSSEPGW-FAAASWLMYISFACFIIMIIFYI 75 (163)
T ss_pred HHHHHHHHHHheECCceEEEeCC----c----------ccceeeE-EeCCCCCccH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456799999999999976432 1 1234332 1111 22222 55677777777666555443333
Q ss_pred H--HHhcccCCHHHHHHHhhh
Q psy11844 112 L--FFFMQPTSVYMVAAWLQI 130 (241)
Q Consensus 112 l--~~~i~~r~Pe~~~aW~dp 130 (241)
. +-..+..++...+.|..+
T Consensus 76 ~~~~~v~~~g~~~~~r~~~~~ 96 (163)
T PF06653_consen 76 IIVYKVRKHGYSCSIRKWFHI 96 (163)
T ss_pred HHheeEecccccHHHHHHHHH
Confidence 2 233346666677777654
No 39
>PRK15416 lipopolysaccharide core heptose(II)-phosphate phosphatase; Provisional
Probab=81.56 E-value=3.9 Score=35.63 Aligned_cols=45 Identities=18% Similarity=0.111 Sum_probs=33.3
Q ss_pred CCCHHHHHHhHHHHHHhhccccccCCCeEEEEecchhHHHHHHHhhC
Q psy11844 138 FESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDN 184 (241)
Q Consensus 138 GESl~~~~~Rv~~~~~~~i~~~~~~g~~VLVVsHGgvIrall~~llg 184 (241)
-|.+.+...+..+++.+++. + .++++||||+|...+--+.....+
T Consensus 128 ~~~Lye~~~~~~~~i~~~i~-~-~~~~tVLIVGHnp~i~~La~~~~~ 172 (201)
T PRK15416 128 DKRLSDCGNGIYSAIKDLQR-K-SPDKNIVIFTHNHCLTYIAKDKRG 172 (201)
T ss_pred cHHHhhcCchhHHHHHHHHH-h-CCCCEEEEEeCchhHHHHHHHhcC
Confidence 35567777777777777443 4 466899999999999988886553
No 40
>PF15108 TMEM37: Voltage-dependent calcium channel gamma-like subunit protein family
Probab=79.16 E-value=6.3 Score=33.30 Aligned_cols=58 Identities=21% Similarity=0.437 Sum_probs=38.1
Q ss_pred HHHHHHHH---HHHhhhccceeeccCCcceeecccccccccCCccccccccCcceeccchhhH
Q psy11844 31 IFTLCFAL---IVSVAFLTPEWIGIANKGRLGLWSSCEFDVNGFEECTGKFAEFMEISNAAFK 90 (241)
Q Consensus 31 ~~t~~~ai---~~~v~f~~p~Wi~~~~~~~fgl~~~C~~~~~~~~~C~g~~~~f~~ips~a~~ 90 (241)
+-.+|.|+ ++.++.-.-+|+..+ .--||||++|.-+..+...| .|--+-...|-.+.-
T Consensus 23 LIilC~alavVLSSisiCDG~WLla~-~~lFGLWhFCt~~n~s~~~C-~rdL~~a~v~gL~~g 83 (184)
T PF15108_consen 23 LIILCTALAVVLSSISICDGHWLLAE-DRLFGLWHFCTVSNQSSPHC-LRDLSQAHVPGLAVG 83 (184)
T ss_pred HHHHHHHHHHHHhhheeecceEEEec-CeeeeeeeeeecCCCCcchh-hHHHHHhcCchHHHH
Confidence 34455554 445556678999864 34799999997554455799 666666667755443
No 41
>PF11808 DUF3329: Domain of unknown function (DUF3329); InterPro: IPR021766 This family of proteins are functionally uncharacterised. This family is only found in bacteria. ; GO: 0004673 protein histidine kinase activity
Probab=75.77 E-value=12 Score=28.06 Aligned_cols=40 Identities=18% Similarity=0.241 Sum_probs=29.0
Q ss_pred hcccCCHHHHHHHhh-hccCCCCC-CCCHHHHHHhHHHHHHh
Q psy11844 115 FMQPTSVYMVAAWLQ-IISEEFPM-FESLKLTIERTLPYWNN 154 (241)
Q Consensus 115 ~i~~r~Pe~~~aW~d-p~a~~~pg-GESl~~~~~Rv~~~~~~ 154 (241)
.-+-..-....+|.+ +....||. ...-.|+.++++..-.+
T Consensus 42 ~wh~~~l~rL~~WL~~~~~~~pP~~~G~W~~if~~Lyr~qrr 83 (90)
T PF11808_consen 42 FWHLYQLYRLERWLRNPRKDEPPEGSGIWGEIFDRLYRLQRR 83 (90)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHHHH
Confidence 345666778889995 65666774 55889999999886554
No 42
>PRK10848 phosphohistidine phosphatase; Provisional
Probab=72.96 E-value=18 Score=29.82 Aligned_cols=42 Identities=19% Similarity=0.100 Sum_probs=33.3
Q ss_pred CCCeEEEEecchhHHHHHHHhhCCChhhhhcccCCCcccEEEEEcC
Q psy11844 162 EGKKILIAAHGNSLRGIVKHLDNMSDEAIMGLNLPTGIPFVYELDE 207 (241)
Q Consensus 162 ~g~~VLVVsHGgvIrall~~llg~~~e~~~~~~i~n~s~s~ie~~~ 207 (241)
+.++||||+|.-.+..+...+++..... ..++|++..+++++
T Consensus 99 ~~~~vllVgH~P~l~~l~~~L~~~~~~~----~~~t~~i~~l~~~~ 140 (159)
T PRK10848 99 GVASVLVISHLPLVGYLVAELCPGETPP----MFTTSAIACVTLDE 140 (159)
T ss_pred CCCeEEEEeCcCcHHHHHHHHhCCCCCC----CcCCceEEEEEecc
Confidence 4579999999999999999988643322 26799999999973
No 43
>KOG4671|consensus
Probab=72.22 E-value=21 Score=30.93 Aligned_cols=75 Identities=21% Similarity=0.429 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhhhccceeeccCCcceeecccccccccC------CccccccccCcceeccchhhHHHHHHHHHHHHHHH
Q psy11844 31 IFTLCFALIVSVAFLTPEWIGIANKGRLGLWSSCEFDVN------GFEECTGKFAEFMEISNAAFKISTVLCLVSVTLAL 104 (241)
Q Consensus 31 ~~t~~~ai~~~v~f~~p~Wi~~~~~~~fgl~~~C~~~~~------~~~~C~g~~~~f~~ips~a~~~~~~~~~~~~~l~~ 104 (241)
+|-+..-.+.+++.-.|.|+..+.. +-|||.+|..+.. -...|+.. ..+.-+++++-+...+ -++
T Consensus 23 icl~~aial~IvAl~s~~Wl~as~~-~q~Lw~~C~~~~~~~~~pfd~~~C~s~------~~~~~~~aaAAmL~~g--~~i 93 (201)
T KOG4671|consen 23 ICLLSAIALDIVALASRGWLQASDQ-RQGLWWSCRKPASTHAAPFDPGGCQST------LEVDGGRAAAAMLFIG--AAI 93 (201)
T ss_pred HHHHHHHHHHHHHhccchhhhcCCC-CcceeeeecCcCCcCCCCcCCccCcCh------hhcchHHHHHHHHHHH--HHH
Confidence 3444444456678889999976533 3359999986532 12267332 2223344444444444 345
Q ss_pred HHHHHHHHHH
Q psy11844 105 VTIAVMLLFF 114 (241)
Q Consensus 105 ~~~~~~~l~~ 114 (241)
++|+.++.++
T Consensus 94 ~~I~filgl~ 103 (201)
T KOG4671|consen 94 LVICFILGLF 103 (201)
T ss_pred HHHHHHHHHH
Confidence 5566555554
No 44
>PHA00422 hypothetical protein
Probab=61.81 E-value=3.3 Score=29.77 Aligned_cols=17 Identities=29% Similarity=0.604 Sum_probs=13.7
Q ss_pred hhhchhhhhhhhccccc
Q psy11844 8 VETSQIYATNYVRNSKA 24 (241)
Q Consensus 8 ~~~~~~y~~~y~rn~r~ 24 (241)
-+..+.||+||+||--+
T Consensus 12 k~~pk~fQSn~vR~naa 28 (69)
T PHA00422 12 KSCPKTFQSNYVRNNAS 28 (69)
T ss_pred HhCcHHHHHHHHhhHHH
Confidence 45678999999999644
No 45
>KOG4754|consensus
Probab=60.45 E-value=15 Score=32.62 Aligned_cols=44 Identities=18% Similarity=0.319 Sum_probs=35.8
Q ss_pred CCCHHHHHHhHHHHHHhhccccccCCCeEEEEecchhHHHHHHHhhC
Q psy11844 138 FESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDN 184 (241)
Q Consensus 138 GESl~~~~~Rv~~~~~~~i~~~~~~g~~VLVVsHGgvIrall~~llg 184 (241)
-|+.++...|-..+++. +.. .+.+-|.||+|+|-|+.++..+-.
T Consensus 158 ~ed~e~~a~r~re~~~~-l~~--r~ek~iavvths~fl~~llk~i~k 201 (248)
T KOG4754|consen 158 REDDEESAARSREFLEW-LAK--RPEKEIAVVTHSGFLRSLLKKIQK 201 (248)
T ss_pred hhhHHHHHHhHHHHHHH-HHh--CccceEEEEEehHHHHHHHHHhcc
Confidence 57888889999998887 443 356779999999999999888754
No 46
>PF15345 TMEM51: Transmembrane protein 51
Probab=54.16 E-value=3.2 Score=36.88 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=20.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q psy11844 88 AFKISTVLCLVSVTLALVTIAVML 111 (241)
Q Consensus 88 a~~~~~~~~~~~~~l~~~~~~~~~ 111 (241)
.|-+|.|+||.|+.|+||+||--+
T Consensus 57 t~SVAyVLVG~Gv~LLLLSICL~I 80 (233)
T PF15345_consen 57 TFSVAYVLVGSGVALLLLSICLSI 80 (233)
T ss_pred eEEEEEehhhHHHHHHHHHHHHHH
Confidence 577889999999999999987544
No 47
>TIGR02978 phageshock_pspC phage shock protein C. All members of this protein family are the phage shock protein PspC. These proteins contain a PspC domain, as do other members of the larger family of proteins described by Pfam model pfam04024. The phage shock regulon is restricted to the Proteobacteria and somewhat sparsely distributed there. It is expressed, under positive control of a sigma-54-dependent transcription factor, PspF, which binds and is modulated by PspA. Stresses that induce the psp regulon include phage secretin overexpression, ethanol, heat shock, and protein export defects.
Probab=39.86 E-value=25 Score=28.23 Aligned_cols=80 Identities=13% Similarity=0.212 Sum_probs=39.6
Q ss_pred ccccccCcceeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHhhhccCCCCCCCCHHHHHHhHHHHH
Q psy11844 73 ECTGKFAEFMEISNAAFKISTVLCLVSVTLALVTIAVMLLFFFMQPTSVYMVAAWLQIISEEFPMFESLKLTIERTLPYW 152 (241)
Q Consensus 73 ~C~g~~~~f~~ips~a~~~~~~~~~~~~~l~~~~~~~~~l~~~i~~r~Pe~~~aW~dp~a~~~pgGESl~~~~~Rv~~~~ 152 (241)
-| +.+++-..||....++..++..+-....++.+.=+++++.+..+.+..... .+........|+|-.+..+++..-+
T Consensus 16 Vc-aGlA~y~gi~~~~VRl~~vl~~~~~~~~~~ll~Y~i~w~~lp~~p~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~ 93 (121)
T TIGR02978 16 VC-AGLADYFGVEVWLVRILVVSALLFGGGFFVLVAYIALWLLLDKKPINLYED-DDVKSKPWQAGQSPRQALREVKREF 93 (121)
T ss_pred HH-HHHHHHHCcCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCccccccc-cccchhhhhcCCCHHHHHHHHHHHH
Confidence 78 778888899987777765542221111111122333344444433221111 0111111235677777777777766
Q ss_pred Hh
Q psy11844 153 NN 154 (241)
Q Consensus 153 ~~ 154 (241)
++
T Consensus 94 ~~ 95 (121)
T TIGR02978 94 RD 95 (121)
T ss_pred HH
Confidence 65
No 48
>PHA02849 putative transmembrane protein; Provisional
Probab=35.82 E-value=35 Score=25.43 Aligned_cols=38 Identities=13% Similarity=0.296 Sum_probs=26.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHH
Q psy11844 87 AAFKISTVLCLVSVTLALVTIAVMLLFFFMQPTSVYMVA 125 (241)
Q Consensus 87 ~a~~~~~~~~~~~~~l~~~~~~~~~l~~~i~~r~Pe~~~ 125 (241)
.+|.+-|++| +.+.++..+|.++++.-+.+..+....+
T Consensus 10 ~~f~~g~v~v-i~v~v~vI~i~~flLlyLvkws~v~d~~ 47 (82)
T PHA02849 10 IEFDAGAVTV-ILVFVLVISFLAFMLLYLIKWSYVINFL 47 (82)
T ss_pred cccccchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688899998 5566666777777777666665554443
No 49
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=33.89 E-value=1.5e+02 Score=22.94 Aligned_cols=52 Identities=13% Similarity=0.226 Sum_probs=36.0
Q ss_pred CCCHHHHHHhHHHHHHhhccccccCCCeEEEEecchhHHH------HHHHhhCCChhhhhcc
Q psy11844 138 FESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRG------IVKHLDNMSDEAIMGL 193 (241)
Q Consensus 138 GESl~~~~~Rv~~~~~~~i~~~~~~g~~VLVVsHGgvIra------ll~~llg~~~e~~~~~ 193 (241)
++.+.+..+++..+++..+ ..+++|||-+++|.-|+ .+....|++.++..+.
T Consensus 57 ~~~~~~~~~~~~~~i~~~~----~~~~~VlVHC~~G~~RS~~v~~~yl~~~~~~~~~~A~~~ 114 (138)
T smart00195 57 ETKISPYFPEAVEFIEDAE----KKGGKVLVHCQAGVSRSATLIIAYLMKYRNLSLNDAYDF 114 (138)
T ss_pred CCChHHHHHHHHHHHHHHh----cCCCeEEEECCCCCchHHHHHHHHHHHHhCCCHHHHHHH
Confidence 4566677788889988832 35678999999987443 2334467888776643
No 50
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=28.42 E-value=46 Score=28.41 Aligned_cols=33 Identities=15% Similarity=0.028 Sum_probs=22.8
Q ss_pred CCHHHHHHhHHHHHHhhccccccCCCeEEEEecch
Q psy11844 139 ESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGN 173 (241)
Q Consensus 139 ESl~~~~~Rv~~~~~~~i~~~~~~g~~VLVVsHGg 173 (241)
-+-+++.+|+.++++.+ ... ||+..|++|+|-.
T Consensus 71 ~~~~~~~~~~~~fv~~i-R~~-hP~tPIllv~~~~ 103 (178)
T PF14606_consen 71 MSPEEFRERLDGFVKTI-REA-HPDTPILLVSPIP 103 (178)
T ss_dssp CCTTTHHHHHHHHHHHH-HTT--SSS-EEEEE---
T ss_pred CCHHHHHHHHHHHHHHH-HHh-CCCCCEEEEecCC
Confidence 45668899999999984 434 8999999999644
No 51
>PF15179 Myc_target_1: Myc target protein 1
Probab=27.79 E-value=63 Score=27.98 Aligned_cols=38 Identities=13% Similarity=0.255 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHh
Q psy11844 91 ISTVLCLVSVTLALVTIAVMLLFFFMQPTSVYMVAAWL 128 (241)
Q Consensus 91 ~~~~~~~~~~~l~~~~~~~~~l~~~i~~r~Pe~~~aW~ 128 (241)
+.+|-|.++++|+|+.++-+++.|.-+.+....+-+|.
T Consensus 22 IlaF~vSm~iGLviG~li~~LltwlSRRRASa~Isr~s 59 (197)
T PF15179_consen 22 ILAFCVSMAIGLVIGALIWALLTWLSRRRASARISRWS 59 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccC
Confidence 56788888999999999999999988888888887776
No 52
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=27.52 E-value=1.7e+02 Score=24.17 Aligned_cols=18 Identities=6% Similarity=-0.044 Sum_probs=12.8
Q ss_pred CCCCHHHHHHhHHHHHHh
Q psy11844 137 MFESLKLTIERTLPYWNN 154 (241)
Q Consensus 137 gGESl~~~~~Rv~~~~~~ 154 (241)
+|+++++...+...-+++
T Consensus 40 ~~~~lE~~l~~~~~~~~~ 57 (151)
T PF14584_consen 40 DGKNLEDLLNELFDQIDE 57 (151)
T ss_pred CcccHHHHHHHHHHHHHH
Confidence 688888877766665554
No 53
>PRK10697 DNA-binding transcriptional activator PspC; Provisional
Probab=26.02 E-value=1.2e+02 Score=24.27 Aligned_cols=72 Identities=13% Similarity=0.152 Sum_probs=38.3
Q ss_pred ccccccCcceeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHhhhccCCCCCCCCHHHHHHhHHHHH
Q psy11844 73 ECTGKFAEFMEISNAAFKISTVLCLVSVTLALVTIAVMLLFFFMQPTSVYMVAAWLQIISEEFPMFESLKLTIERTLPYW 152 (241)
Q Consensus 73 ~C~g~~~~f~~ips~a~~~~~~~~~~~~~l~~~~~~~~~l~~~i~~r~Pe~~~aW~dp~a~~~pgGESl~~~~~Rv~~~~ 152 (241)
-| +.+++-..||...-++..++..+ +.+....++.-+..+++-...|... ... ..|+|-.+..+++..-+
T Consensus 21 VC-aGiA~y~gi~~~~VRl~~vl~~~-~~~~~~~~~~Yi~l~~~lp~~P~~~----~~~----~~~~s~~~~l~~~~~~~ 90 (118)
T PRK10697 21 VC-AGIAHYFDVPVKLVRIIVVLSIF-FGLFVFTLVAYIILSFALDPMPDNM----AFG----EQQPSSSELLDEVDREL 90 (118)
T ss_pred eH-HHHHHHHCCCHHHHHHHHHHHHH-HhhchHHHHHHHHHHHhccCCcccc----ccc----ccCCCHHHHHHHHHHHH
Confidence 79 88899999997777776443211 1111122333333333444444321 111 23677777777777766
Q ss_pred Hh
Q psy11844 153 NN 154 (241)
Q Consensus 153 ~~ 154 (241)
++
T Consensus 91 ~~ 92 (118)
T PRK10697 91 AA 92 (118)
T ss_pred HH
Confidence 65
No 54
>PF14423 Imm5: Immunity protein Imm5
Probab=25.72 E-value=73 Score=27.45 Aligned_cols=34 Identities=18% Similarity=0.180 Sum_probs=23.6
Q ss_pred hhhhhhhhccccchhHHHHHHHHHHHHHHHhhhcc
Q psy11844 12 QIYATNYVRNSKAVGVLWGIFTLCFALIVSVAFLT 46 (241)
Q Consensus 12 ~~y~~~y~rn~r~igvlW~~~t~~~ai~~~v~f~~ 46 (241)
..|.++|..+... -+.|++.++|+|+.+.+..+.
T Consensus 90 ~~yv~~~~~~~~~-~~~~~a~~vg~aa~~~a~t~~ 123 (183)
T PF14423_consen 90 SNYVENYEESDYD-MDGWAAMFVGYAAANDAATAL 123 (183)
T ss_pred HHHHHHhhccccc-hhhhHHHHHHHHHHHHHHHHH
Confidence 3444444433333 378999999999999998764
No 55
>COG3630 OadG Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, gamma subunit [Energy production and conversion]
Probab=25.51 E-value=96 Score=23.42 Aligned_cols=20 Identities=5% Similarity=0.052 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy11844 95 LCLVSVTLALVTIAVMLLFF 114 (241)
Q Consensus 95 ~~~~~~~l~~~~~~~~~l~~ 114 (241)
+.|+|+++++|+|+....++
T Consensus 15 vlGmg~VflfL~iLi~~~~~ 34 (84)
T COG3630 15 VLGMGFVFLFLSILIYAMRG 34 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 67888898888888888765
No 56
>PF13422 DUF4110: Domain of unknown function (DUF4110)
Probab=25.00 E-value=82 Score=24.24 Aligned_cols=50 Identities=22% Similarity=0.342 Sum_probs=31.4
Q ss_pred CCCCCHHHHHHhHHHHHHhhccccccCCCeEEEEecchhHHHHHHHhhCCChhhhhccc
Q psy11844 136 PMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMSDEAIMGLN 194 (241)
Q Consensus 136 pgGESl~~~~~Rv~~~~~~~i~~~~~~g~~VLVVsHGgvIrall~~llg~~~e~~~~~~ 194 (241)
--|||+.+|+.|...+|....... ..++ ...+-|-.....+--+.+|..+
T Consensus 13 ~p~EsLr~Ff~RT~~~W~~~a~~~-~~~~--------~~~KeLrk~aF~lAe~Ry~E~k 62 (96)
T PF13422_consen 13 KPFESLRDFFARTSEYWQEWAIES-NRDA--------HRGKELRKDAFDLAEERYWELK 62 (96)
T ss_pred CCCCcHHHHHHHhHHHHHHHHHHc-cccc--------cchHHHHHHHHHHHHHHHHHHH
Confidence 359999999999999999855432 2222 2334444444444446666543
No 57
>PF08391 Ly49: Ly49-like protein, N-terminal region; InterPro: IPR013600 The sequences making up this entry are annotated as, or are similar to, Ly49 receptors (e.g. P20937 from SWISSPROT). These are type II transmembrane receptors expressed by mouse natural killer (NK) cells. They are classified as being activating (e.g.Ly49D and H) or inhibitory (e.g. Ly49A and G), depending on their effect on NK cell function []. They are members of the C-type lectin receptor superfamily [], and in fact in many family members this region is found immediately N-terminal to a lectin C-type domain (IPR001304 from INTERPRO). ; PDB: 1QO3_D 3C8J_D 1P4L_D 3C8K_D 3G8K_B 1JA3_B 3CAD_A 3G8L_A.
Probab=23.99 E-value=26 Score=28.10 Aligned_cols=29 Identities=24% Similarity=0.306 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11844 86 NAAFKISTVLCLVSVTLALVTIAVMLLFF 114 (241)
Q Consensus 86 s~a~~~~~~~~~~~~~l~~~~~~~~~l~~ 114 (241)
|..|+.+++-.|+=|+|+++++..++.-+
T Consensus 1 svpW~liav~LGILCllLLvtv~vL~t~i 29 (119)
T PF08391_consen 1 SVPWRLIAVALGILCLLLLVTVAVLGTMI 29 (119)
T ss_dssp -----------------------------
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34599999999988887777766666544
No 58
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=23.25 E-value=1.3e+02 Score=19.35 Aligned_cols=14 Identities=14% Similarity=0.197 Sum_probs=7.3
Q ss_pred HHHHHHHHhcccCC
Q psy11844 107 IAVMLLFFFMQPTS 120 (241)
Q Consensus 107 ~~~~~l~~~i~~r~ 120 (241)
++||..|-|+..+.
T Consensus 20 ii~~~~YaCcykk~ 33 (38)
T PF02439_consen 20 IICMFYYACCYKKH 33 (38)
T ss_pred HHHHHHHHHHHccc
Confidence 44555565665443
No 59
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=23.00 E-value=1.8e+02 Score=22.11 Aligned_cols=39 Identities=18% Similarity=0.231 Sum_probs=25.0
Q ss_pred HHHHhHHHHHHhhccccccCCCeEEEEec--chhHHHHHHHhh
Q psy11844 143 LTIERTLPYWNNVIVPQLKEGKKILIAAH--GNSLRGIVKHLD 183 (241)
Q Consensus 143 ~~~~Rv~~~~~~~i~~~~~~g~~VLVVsH--GgvIrall~~ll 183 (241)
...+++.+.+++ +..+ .+..+|++++| ||.+-.++...+
T Consensus 45 ~~~~~~~~~l~~-~~~~-~~~~~i~itGHSLGGalA~l~a~~l 85 (140)
T PF01764_consen 45 SLYDQILDALKE-LVEK-YPDYSIVITGHSLGGALASLAAADL 85 (140)
T ss_dssp HHHHHHHHHHHH-HHHH-STTSEEEEEEETHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHhc-ccCccchhhccchHHHHHHHHHHhh
Confidence 344455566666 3333 45679999999 677776666654
No 60
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=21.61 E-value=1.8e+02 Score=19.87 Aligned_cols=26 Identities=12% Similarity=0.368 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc
Q psy11844 93 TVLCLVSVTLALVTIAVMLLFFFMQP 118 (241)
Q Consensus 93 ~~~~~~~~~l~~~~~~~~~l~~~i~~ 118 (241)
.+++.+.+.++++.++...++|-++.
T Consensus 3 il~~LIpiSl~l~~~~l~~f~Wavk~ 28 (51)
T TIGR00847 3 ILTILIPISLLLGGVGLVAFLWSLKS 28 (51)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 35566777777777777777787663
No 61
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=20.96 E-value=81 Score=28.77 Aligned_cols=37 Identities=19% Similarity=0.264 Sum_probs=24.3
Q ss_pred CCCCHHHHHHhHHHHHHhhccccccCCCeEEEEecchhHHH
Q psy11844 137 MFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRG 177 (241)
Q Consensus 137 gGESl~~~~~Rv~~~~~~~i~~~~~~g~~VLVVsHGgvIra 177 (241)
.+.|+++..+|+...++.. . + -+..|++.+|||.|..
T Consensus 190 ~~~sl~~a~~~~~~i~~aa-~-~--v~~dii~l~hGGPI~~ 226 (268)
T PF09370_consen 190 TALSLEEAAERIQEIFDAA-R-A--VNPDIIVLCHGGPIAT 226 (268)
T ss_dssp -S--HHHHHHHHHHHHHHH-H-C--C-TT-EEEEECTTB-S
T ss_pred ccCCHHHHHHHHHHHHHHH-H-H--hCCCeEEEEeCCCCCC
Confidence 4679999999998888863 2 2 2346889999999853
No 62
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=20.95 E-value=98 Score=28.05 Aligned_cols=54 Identities=15% Similarity=0.258 Sum_probs=41.0
Q ss_pred ccccccCcceeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHhh
Q psy11844 73 ECTGKFAEFMEISNAAFKISTVLCLVSVTLALVTIAVMLLFFFMQPTSVYMVAAWLQ 129 (241)
Q Consensus 73 ~C~g~~~~f~~ips~a~~~~~~~~~~~~~l~~~~~~~~~l~~~i~~r~Pe~~~aW~d 129 (241)
.| .+.++.. +..+.|-+.+|..+|++++++.|+.++.=+...+++...+..|.-
T Consensus 182 HC-rKvSSVG--~~faRkR~i~f~llgllfliiaigltvGT~~~A~~~~giY~~wv~ 235 (256)
T PF09788_consen 182 HC-RKVSSVG--PRFARKRAIIFFLLGLLFLIIAIGLTVGTWTYAKTYGGIYVSWVG 235 (256)
T ss_pred CC-ceecccc--chHhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcCcEeHHHHH
Confidence 57 4666665 357889999999999999888888877766666777777777763
No 63
>PF03597 CcoS: Cytochrome oxidase maturation protein cbb3-type; InterPro: IPR004714 Cytochrome cbb3 oxidases are found almost exclusively in Proteobacteria, and represent a distinctive class of proton-pumping respiratory haem-copper oxidases (HCO) that lack many of the key structural features that contribute to the reaction cycle of the intensely studied mitochondrial cytochrome c oxidase (CcO). Expression of cytochrome cbb3 oxidase allows human pathogens to colonise anoxic tissues and agronomically important diazotrophs to sustain nitrogen fixation []. Genes encoding a cytochrome cbb3 oxidase were initially designated fixNOQP (ccoNOQP), the ccoNOQP operon is always found close to a second gene cluster, known as fixGHIS (ccoGHIS) whose expression is necessary for the assembly of a functional cbb3 oxidase. On the basis of their derived amino acid sequences each of the four proteins encoded by the ccoGHIS operon are thought to be membrane-bound. It has been suggested that they may function in concert as a multi-subunit complex, possibly playing a role in the uptake and metabolism of copper required for the assembly of the binuclear centre of cytochrome cbb3 oxidase.
Probab=20.83 E-value=1.6e+02 Score=19.44 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccc
Q psy11844 94 VLCLVSVTLALVTIAVMLLFFFMQP 118 (241)
Q Consensus 94 ~~~~~~~~l~~~~~~~~~l~~~i~~ 118 (241)
+++.+++.++++.++...++|-++.
T Consensus 3 l~~lip~sl~l~~~~l~~f~Wavk~ 27 (45)
T PF03597_consen 3 LYILIPVSLILGLIALAAFLWAVKS 27 (45)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4566777777777777777776663
No 64
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=20.22 E-value=1.6e+02 Score=22.43 Aligned_cols=52 Identities=19% Similarity=0.309 Sum_probs=35.3
Q ss_pred CCCCHHHHHHhHHHHHHhhccccccCCCeEEEEecchhHH------HHHHHhhCCChhhhhc
Q psy11844 137 MFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLR------GIVKHLDNMSDEAIMG 192 (241)
Q Consensus 137 gGESl~~~~~Rv~~~~~~~i~~~~~~g~~VLVVsHGgvIr------all~~llg~~~e~~~~ 192 (241)
..+.+.+..+++..++++. . .++++|||-+++|.-| +.+....+++.++..+
T Consensus 51 ~~~~~~~~~~~~~~~i~~~-~---~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~ 108 (133)
T PF00782_consen 51 PEEPILEHLDQAVEFIENA-I---SEGGKVLVHCKAGLSRSGAVAAAYLMKKNGMSLEEAIE 108 (133)
T ss_dssp TTSHGGGGHHHHHHHHHHH-H---HTTSEEEEEESSSSSHHHHHHHHHHHHHHTSSHHHHHH
T ss_pred CCcchHHHHHHHHHhhhhh-h---cccceeEEEeCCCcccchHHHHHHHHHHcCCCHHHHHH
Confidence 3555666667788888873 2 4678999999988743 3344456788876653
Done!