RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11844
(241 letters)
>gnl|CDD|184516 PRK14115, gpmA, phosphoglyceromutase; Provisional.
Length = 247
Score = 197 bits (504), Expect = 2e-63
Identities = 69/106 (65%), Positives = 82/106 (77%), Gaps = 1/106 (0%)
Query: 133 EEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMSDEAIMG 192
EE P+ ESLK TI R LPYWN I PQLK GK++LIAAHGNSLR +VK+LDN+SDE I+
Sbjct: 143 EELPLTESLKDTIARVLPYWNETIAPQLKSGKRVLIAAHGNSLRALVKYLDNISDEEILE 202
Query: 193 LNLPTGIPFVYELDENLKPVVSMKFLGDEETVKKAMEAVANQGKAN 238
LN+PTG+P VYELDENLKP + +LGD + + A AVANQGKA
Sbjct: 203 LNIPTGVPLVYELDENLKP-IKHYYLGDADEIAAAAAAVANQGKAK 247
>gnl|CDD|213596 TIGR01258, pgm_1, phosphoglycerate mutase, BPG-dependent, family 1.
Most members of this family are phosphoglycerate mutase
(EC 5.4.2.1). This enzyme interconverts
2-phosphoglycerate and 3-phosphoglycerate. The enzyme is
transiently phosphorylated on an active site histidine
by 2,3-diphosphoglyerate, which is both substrate and
product. Some members of this family have are
phosphoglycerate mutase as a minor activity and act
primarily as a bisphoglycerate mutase, interconverting
2,3-diphosphoglycerate and 1,3-diphosphoglycerate (EC
5.4.2.4). This model is designated as a subfamily for
this reason. The second and third paralogs in S.
cerevisiae are somewhat divergent and apparently
inactive (see PUBMED:9544241) but are also part of this
subfamily phylogenetically.
Length = 245
Score = 183 bits (467), Expect = 6e-58
Identities = 65/107 (60%), Positives = 78/107 (72%), Gaps = 1/107 (0%)
Query: 130 IISEEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMSDEA 189
+ + P+ ESLK TI R LPYWN+ I P L GK++LI AHGNSLR +VKHL+ +SDE
Sbjct: 140 LDPKVLPLTESLKDTIARVLPYWNDEIAPDLLSGKRVLIVAHGNSLRALVKHLEGISDEE 199
Query: 190 IMGLNLPTGIPFVYELDENLKPVVSMKFLGDEETVKKAMEAVANQGK 236
I+ LN+PTGIP VYELDENLKP+ +LGD E A EAVANQGK
Sbjct: 200 ILELNIPTGIPLVYELDENLKPIKHY-YLGDPEAAAAAAEAVANQGK 245
>gnl|CDD|240280 PTZ00123, PTZ00123, phosphoglycerate mutase like-protein;
Provisional.
Length = 236
Score = 177 bits (450), Expect = 2e-55
Identities = 65/109 (59%), Positives = 80/109 (73%), Gaps = 1/109 (0%)
Query: 130 IISEEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMSDEA 189
I + P E LK T+ER LPYW + I P + GKK+L+AAHGNSLR +VK+LD MS+E
Sbjct: 128 IPKDALPNTECLKDTVERVLPYWEDHIAPDILAGKKVLVAAHGNSLRALVKYLDKMSEED 187
Query: 190 IMGLNLPTGIPFVYELDENLKPVVSMKFLGDEETVKKAMEAVANQGKAN 238
I+ LN+PTG+P VYELDENLKP + +L DEE +K MEAVANQGKA
Sbjct: 188 ILELNIPTGVPLVYELDENLKP-IKKYYLLDEEELKAKMEAVANQGKAK 235
>gnl|CDD|184519 PRK14120, gpmA, phosphoglyceromutase; Provisional.
Length = 249
Score = 152 bits (387), Expect = 7e-46
Identities = 60/101 (59%), Positives = 68/101 (67%)
Query: 136 PMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMSDEAIMGLNL 195
P E LK + R LPYW + IVP LK GK +LIAAHGNSLR +VKHLD +SDE I GLN+
Sbjct: 148 PRTECLKDVVARFLPYWEDDIVPDLKAGKTVLIAAHGNSLRALVKHLDGISDEDIAGLNI 207
Query: 196 PTGIPFVYELDENLKPVVSMKFLGDEETVKKAMEAVANQGK 236
PTGIP VYELDE+ KP+ D E AVANQGK
Sbjct: 208 PTGIPLVYELDEDFKPLNPGGTYLDPEAAAAGAAAVANQGK 248
>gnl|CDD|223661 COG0588, GpmA, Phosphoglycerate mutase 1 [Carbohydrate transport
and metabolism].
Length = 230
Score = 145 bits (369), Expect = 2e-43
Identities = 51/89 (57%), Positives = 65/89 (73%), Gaps = 1/89 (1%)
Query: 132 SEEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMSDEAIM 191
P+ ESLK T+ER LPYW + I P LK GK +LI AHGNSLR ++K+L+ +SDE I+
Sbjct: 143 IGGLPLTESLKDTVERVLPYWEDDIAPNLKSGKNVLIVAHGNSLRALIKYLEGISDEDIL 202
Query: 192 GLNLPTGIPFVYELDENLKPVVSMKFLGD 220
LN+PTGIP VYELD+NLK +S +LG
Sbjct: 203 DLNIPTGIPLVYELDKNLKV-ISAYYLGP 230
>gnl|CDD|172608 PRK14118, gpmA, phosphoglyceromutase; Provisional.
Length = 227
Score = 107 bits (268), Expect = 1e-28
Identities = 47/101 (46%), Positives = 68/101 (67%), Gaps = 1/101 (0%)
Query: 118 PTSVYMVAAWLQIISEEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRG 177
P S + + + ++ P E+LK+T+ER LP+W + I P L GK++L+AAHGNSLR
Sbjct: 128 PNSAHNDRRYAHLPADVVPDAENLKVTLERVLPFWEDQIAPALLSGKRVLVAAHGNSLRA 187
Query: 178 IVKHLDNMSDEAIMGLNLPTGIPFVYELDENLKPVVSMKFL 218
+ KH++ +SD IM L +PTG P VY+LD+NLK VV +L
Sbjct: 188 LAKHIEGISDADIMDLEIPTGQPLVYKLDDNLK-VVEKFYL 227
>gnl|CDD|184518 PRK14119, gpmA, phosphoglyceromutase; Provisional.
Length = 228
Score = 103 bits (257), Expect = 7e-27
Identities = 33/74 (44%), Positives = 53/74 (71%)
Query: 136 PMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMSDEAIMGLNL 195
P ESLK T+ R +P+W + I L +G+ +L++AHGNS+R ++K+L+++SDE I+ +
Sbjct: 147 PYSESLKDTLVRVIPFWTDHISQYLLDGQTVLVSAHGNSIRALIKYLEDVSDEDIINYEI 206
Query: 196 PTGIPFVYELDENL 209
TG P VYEL ++L
Sbjct: 207 KTGAPLVYELTDDL 220
>gnl|CDD|234902 PRK01112, PRK01112, phosphoglyceromutase; Provisional.
Length = 228
Score = 99.0 bits (247), Expect = 2e-25
Identities = 35/72 (48%), Positives = 51/72 (70%)
Query: 136 PMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMSDEAIMGLNL 195
P ESL+ T +RTLPY+ N I+P L++GK + ++AHGNSLR ++ L+ +S+E ++ L L
Sbjct: 146 PQGESLEDTGQRTLPYFQNRILPHLQQGKNVFVSAHGNSLRSLIMDLEKLSEEEVLSLEL 205
Query: 196 PTGIPFVYELDE 207
PTG P VYE
Sbjct: 206 PTGKPIVYEWTG 217
>gnl|CDD|172606 PRK14116, gpmA, phosphoglyceromutase; Provisional.
Length = 228
Score = 98.1 bits (244), Expect = 6e-25
Identities = 41/82 (50%), Positives = 57/82 (69%)
Query: 136 PMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMSDEAIMGLNL 195
P E+LK+T+ER +P+W + I P L +GK ++IAAHGNSLR + K+++N+SDE IM L +
Sbjct: 147 PGGENLKVTLERVIPFWEDHIAPDLLDGKNVIIAAHGNSLRALTKYIENISDEDIMNLEM 206
Query: 196 PTGIPFVYELDENLKPVVSMKF 217
TG P VY+ DE L V K
Sbjct: 207 ATGEPVVYDFDEKLNVVSKEKL 228
>gnl|CDD|184517 PRK14117, gpmA, phosphoglyceromutase; Provisional.
Length = 230
Score = 97.4 bits (242), Expect = 1e-24
Identities = 40/84 (47%), Positives = 57/84 (67%), Gaps = 1/84 (1%)
Query: 136 PMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMSDEAIMGLNL 195
P E+LK+T+ER LP+W + I P LK+GK + + AHGNS+R +VKH+ +SD+ IM + +
Sbjct: 147 PDAENLKVTLERALPFWEDKIAPALKDGKNVFVGAHGNSIRALVKHIKGLSDDEIMDVEI 206
Query: 196 PTGIPFVYELDENLKPVVSMKFLG 219
P P V+E DE L VV +LG
Sbjct: 207 PNFPPLVFEFDEKLN-VVKEYYLG 229
>gnl|CDD|220647 pfam10242, L_HGMIC_fpl, Lipoma HMGIC fusion partner-like protein.
This is a group of proteins expressed from a series of
genes referred to as Lipoma HGMIC fusion partner-like.
The proteins carry four highly conserved transmembrane
domains in this entry. In certain instances, eg in
LHFPL5, mutations cause deafness in humans and
hypospadias, and LHFPL1 is transcribed in six liver
tumour cell lines.
Length = 181
Score = 91.2 bits (227), Expect = 6e-23
Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 8/116 (6%)
Query: 25 VGVLWGIFTLCFALIVSVAFLTPEWIG----IANKGRLGLWSSC-EFDVNGFEECTGKFA 79
VGVLW + T+CFA++ VAF+ P W+G G GL+ C C G
Sbjct: 1 VGVLWALLTICFAILSVVAFVQPYWLGGSVDSPKAGSFGLYRRCIGLMDQMELTCGGYAL 60
Query: 80 EFMEISNAAFKISTVLCLVSVTLALVTIAVMLLFFFMQP---TSVYMVAAWLQIIS 132
+F+ I ++A++ + + L L+ + L F Q SV+ + WLQ+++
Sbjct: 61 DFLAIPSSAWQAAMFFVGLGTALLLLIACLSLFTFCRQSIISKSVFKICGWLQLVA 116
>gnl|CDD|167205 PRK01295, PRK01295, phosphoglyceromutase; Provisional.
Length = 206
Score = 87.8 bits (218), Expect = 3e-21
Identities = 35/71 (49%), Positives = 49/71 (69%)
Query: 136 PMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMSDEAIMGLNL 195
P ESLK T R LPY+ I+P++ G+++L+AAHGNSLR +V LD ++ E I+ L L
Sbjct: 123 PGGESLKDTGARVLPYYLQEILPRVLRGERVLVAAHGNSLRALVMVLDGLTPEQILKLEL 182
Query: 196 PTGIPFVYELD 206
TG+P VY L+
Sbjct: 183 ATGVPIVYRLN 193
>gnl|CDD|132716 cd07040, HP, Histidine phosphatase domain found in a functionally
diverse set of proteins, mostly phosphatases; contains a
His residue which is phosphorylated during the reaction.
Catalytic domain of a functionally diverse set of
proteins, most of which are phosphatases. The conserved
catalytic core of this domain contains a His residue
which is phosphorylated in the reaction. This set of
proteins includes cofactor-dependent and
cofactor-independent phosphoglycerate mutases (dPGM, and
BPGM respectively), fructose-2,6-bisphosphatase
(F26BP)ase, Sts-1, SixA, histidine acid phosphatases,
phytases, and related proteins. Functions include roles
in metabolism, signaling, or regulation, for example
F26BPase affects glycolysis and gluconeogenesis through
controlling the concentration of F26BP; BPGM controls
the concentration of 2,3-BPG (the main allosteric
effector of hemoglobin in human blood cells); human
Sts-1 is a T-cell regulator; Escherichia coli Six A
participates in the ArcB-dependent His-to-Asp
phosphorelay signaling system; phytases scavenge
phosphate from extracellular sources. Deficiency and
mutation in many of the human members result in disease,
for example erythrocyte BPGM deficiency is a disease
associated with a decrease in the concentration of
2,3-BPG. Clinical applications include the use of
prostatic acid phosphatase (PAP) as a serum marker for
prostate cancer. Agricultural applications include the
addition of phytases to animal feed.
Length = 153
Score = 76.7 bits (189), Expect = 1e-17
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 128 LQIISEEFPMFESLKLTIE-RTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMS 186
+II E +++ R L ++ L +GK +LI +HG ++R ++ L +S
Sbjct: 63 AEIILEGLFEGLPVEVDPRARVLNALLELLARHLLDGKNVLIVSHGGTIRALLAALLGLS 122
Query: 187 DEAIMGLNLPTGIPFVYELDENLKPVV 213
DE I+ LNLP G V ELDE V
Sbjct: 123 DEEILSLNLPNGSILVLELDECGGKYV 149
>gnl|CDD|132718 cd07067, HP_PGM_like, Histidine phosphatase domain found in
phosphoglycerate mutases and related proteins, mostly
phosphatases; contains a His residue which is
phosphorylated during the reaction. Subgroup of the
catalytic domain of a functionally diverse set of
proteins, most of which are phosphatases. The conserved
catalytic core of this domain contains a His residue
which is phosphorylated in the reaction. This subgroup
contains cofactor-dependent and cofactor-independent
phosphoglycerate mutases (dPGM, and BPGM respectively),
fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, and
related proteins. Functions include roles in metabolism,
signaling, or regulation, for example, F26BPase affects
glycolysis and gluconeogenesis through controlling the
concentration of F26BP; BPGM controls the concentration
of 2,3-BPG (the main allosteric effector of hemoglobin
in human blood cells); human Sts-1 is a T-cell
regulator; Escherichia coli Six A participates in the
ArcB-dependent His-to-Asp phosphorelay signaling system.
Deficiency and mutation in many of the human members
result in disease, for example erythrocyte BPGM
deficiency is a disease associated with a decrease in
the concentration of 2,3-BPG.
Length = 153
Score = 74.7 bits (184), Expect = 7e-17
Identities = 36/92 (39%), Positives = 49/92 (53%), Gaps = 11/92 (11%)
Query: 128 LQIISEEFPMFESLKLTI------ERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKH 181
+II EE P L + + R LP +I P +GK +LI +HG LR ++ +
Sbjct: 63 AEIILEELP---GLPVEVDPRLREARVLPALEELIAPH--DGKNVLIVSHGGVLRALLAY 117
Query: 182 LDNMSDEAIMGLNLPTGIPFVYELDENLKPVV 213
L +SDE I+ LNLP G V ELDEN V+
Sbjct: 118 LLGLSDEDILRLNLPNGSISVLELDENGGGVL 149
>gnl|CDD|214859 smart00855, PGAM, Phosphoglycerate mutase family. Phosphoglycerate
mutase (PGAM) and bisphosphoglycerate mutase (BPGM) are
structurally related enzymes that catalyse reactions
involving the transfer of phospho groups between the
three carbon atoms of phosphoglycerate... Both enzymes
can catalyse three different reactions with different
specificities, the isomerization of 2-phosphoglycerate
(2-PGA) to 3-phosphoglycerate (3-PGA) with
2,3-diphosphoglycerate (2,3-DPG) as the primer of the
reaction, the synthesis of 2,3-DPG from 1,3-DPG with
3-PGA as a primer and the degradation of 2,3-DPG to
3-PGA (phosphatase activity). In mammals, PGAM is a
dimeric protein with two isoforms, the M (muscle) and B
(brain) forms. In yeast, PGAM is a tetrameric protein.
Length = 158
Score = 44.8 bits (106), Expect = 5e-06
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 133 EEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLR 176
P ESL +ER P + +I G+ +LI +HG +R
Sbjct: 113 PAPPGGESLADLVERVEPALDELIATADASGQNVLIVSHGGVIR 156
>gnl|CDD|215845 pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch
1). The histidine phosphatase superfamily is so named
because catalysis centres on a conserved His residue
that is transiently phosphorylated during the catalytic
cycle. Other conserved residues contribute to a
'phosphate pocket' and interact with the phospho group
of substrate before, during and after its transfer to
the His residue. Structure and sequence analyses show
that different families contribute different additional
residues to the 'phosphate pocket' and, more
surprisingly, differ in the position, in sequence and in
three dimensions, of a catalytically essential acidic
residue. The superfamily may be divided into two main
branches. The larger branch 1 contains a wide variety of
catalytic functions, the best known being fructose
2,6-bisphosphatase (found in a bifunctional protein with
2-phosphofructokinase) and cofactor-dependent
phosphoglycerate mutase. The latter is an unusual
example of a mutase activity in the superfamily: the
vast majority of members appear to be phosphatases. The
bacterial regulatory protein phosphatase SixA is also in
branch 1 and has a minimal, and possible ancestral-like
structure, lacking the large domain insertions that
contribute to binding of small molecules in branch 1
members.
Length = 154
Score = 36.3 bits (84), Expect = 0.004
Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Query: 124 VAAWLQI-ISEEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGI 178
+ AWL+ P ESL ER ++ G +LI +HG +R +
Sbjct: 101 LRAWLEDPADFRPPGGESLADVYERVEAALEELL--AKHPGGNVLIVSHGGVIRAL 154
>gnl|CDD|223483 COG0406, phoE, Broad specificity phosphatase PhoE and related
phosphatases [General function prediction only].
Length = 208
Score = 35.2 bits (81), Expect = 0.019
Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Query: 135 FPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMSDEAIMGLN 194
P ESL +R + ++ + G +L+ +HG +R ++ +L + E + L
Sbjct: 119 PPGGESLADVSKRVVAALAELL--RSPPGNNVLVVSHGGVIRALLAYLLGLDLEELWRLR 176
Query: 195 LPTGIPFVYELDEN 208
L V E D+
Sbjct: 177 LDNASVTVLEFDDG 190
>gnl|CDD|234131 TIGR03162, ribazole_cobC, alpha-ribazole phosphatase. Members of
this protein family include the known CobC protein of
Salmonella and Eschichia coli species, and homologous
proteins found in cobalamin biosynthesis regions in
other bacteria. This protein is alpha-ribazole
phosphatase (EC 3.1.3.73) and, like many phosphatases,
can be closely related in sequence to other phosphatases
with different functions. Close homologs excluded from
this model include proteins with duplications, so this
model is built in -g mode to suppress hits to those
proteins [Biosynthesis of cofactors, prosthetic groups,
and carriers, Heme, porphyrin, and cobalamin].
Length = 177
Score = 33.7 bits (78), Expect = 0.038
Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 8/66 (12%)
Query: 133 EEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMSDEAIMG 192
E F F +R + ++ EG +LI HG +R ++ HL + E
Sbjct: 115 ESFADFY------QRVSEFLEELLKAH--EGDNVLIVTHGGVIRALLAHLLGLPLEQWWS 166
Query: 193 LNLPTG 198
+ G
Sbjct: 167 FAVEYG 172
>gnl|CDD|222446 pfam13903, Claudin_2, PMP-22/EMP/MP20/Claudin tight junction.
Members of this family are claudins, that form tight
junctions between cells.
Length = 170
Score = 30.4 bits (69), Expect = 0.54
Identities = 18/109 (16%), Positives = 38/109 (34%), Gaps = 11/109 (10%)
Query: 34 LCFALIVSVAFLTPEWI--GIANKGRLGLWSS---CEFDVNGFEE-CTGKFAEFMEISNA 87
L L++ VA T W+ LG + F G C +
Sbjct: 2 LALGLLL-VALATDYWVEADPRRTNSLGSNGAVNTGLFSHLGLWRICFTSEVDVNNFVLT 60
Query: 88 AFKISTVLCLVSVTLALVTIAVMLLFFFM----QPTSVYMVAAWLQIIS 132
+ T++ L+ +TL LV + + + ++ ++ L +++
Sbjct: 61 SLPDLTIVVLLFLTLGLVLSLLACVLGLCSALKKSGALLLLTGVLLLLA 109
>gnl|CDD|132173 TIGR03129, one_C_dehyd_B, formylmethanofuran dehydrogenase subunit
B. Members of this largely archaeal protein family are
subunit B of the formylmethanofuran dehydrogenase.
Nomenclature in some bacteria may reflect inclusion of
the formyltransferase described by TIGR03119 as part of
the complex, and therefore call this protein
formyltransferase/hydrolase complex Fhc subunit C. Note
that this model does not distinguish tungsten (FwdB)
from molybdenum-containing (FmdB) forms of this enzyme.
Length = 421
Score = 30.0 bits (68), Expect = 1.1
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 9/46 (19%)
Query: 195 LPTGIPFV------YELDE---NLKPVVSMKFLGDEETVKKAMEAV 231
+P I + Y +D L+ V+ DEE +KK +E V
Sbjct: 376 IPVAIDGIEAGGTAYRMDNVPIRLRKVIESPEPSDEEILKKILERV 421
>gnl|CDD|217684 pfam03710, GlnE, Glutamate-ammonia ligase adenylyltransferase.
Conserved repeated domain found in GlnE proteins. These
proteins adenylate and deadenylate glutamine synthases:
ATP + {L-Glutamate:ammonia ligase (ADP-forming)} =
Diphosphate + Adenylyl-{L-Glutamate:Ammonia ligase
(ADP-forming)}. The family is related to the pfam01909
domain.
Length = 251
Score = 29.6 bits (67), Expect = 1.1
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 6/52 (11%)
Query: 166 ILIAAHGNSLRGIVKHLDN------MSDEAIMGLNLPTGIPFVYELDENLKP 211
+ + G K +D ++ I L+ PTG F+YE+D L+P
Sbjct: 151 VFLYDPDGETEGGRKSIDAAQFFTRLAQRLISILSAPTGDGFLYEVDMRLRP 202
>gnl|CDD|223960 COG1029, FwdB, Formylmethanofuran dehydrogenase subunit B [Energy
production and conversion].
Length = 429
Score = 30.1 bits (68), Expect = 1.2
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 209 LKPVVSMKFLGDEETVKKAMEAV 231
+KPVV K L DEE +KK +E V
Sbjct: 403 MKPVVESKTLSDEEILKKLLEKV 425
>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584). This
protein is found in bacteria and eukaryotes. Proteins in
this family are typically between 943 to 1234 amino acids
in length. This family contains a P-loop motif suggesting
it is a nucleotide binding protein. It may be involved in
replication.
Length = 1198
Score = 30.0 bits (68), Expect = 1.3
Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 6/63 (9%)
Query: 127 WLQIISEEFPMFESLKLTIERTL-PY---WNNVIVPQLKEGKKILIAAHGNSLRGIVKHL 182
W ++ S + K R L PY +++VPQ ++ + + +G L L
Sbjct: 941 WQKLRSND--STLGDKGIDYRELFPYLEELLDLLVPQKRQALREQVTINGGMLNEFYDVL 998
Query: 183 DNM 185
++
Sbjct: 999 EDF 1001
>gnl|CDD|234402 TIGR03928, T7_EssCb_Firm, type VII secretion protein EssC,
C-terminal domain. This model describes the C-terminal
domain, or longer subunit, of the Firmicutes type VII
secretion protein EssC. This protein (homologous to EccC
in Actinobacteria) and the WXG100 target proteins are
the only homologous parts of type VII secretion between
Firmicutes and Actinobacteria [Protein fate, Protein and
peptide secretion and trafficking].
Length = 1296
Score = 28.8 bits (65), Expect = 3.5
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 71 FEECTGKFAEFMEISNAAFKISTVLCLVSVTLALVTIAVMLLFFFMQPTSVYMVAA 126
+EE T K + + K L L + LV IAV +L QP ++++A+
Sbjct: 14 YEEPTDKV-KISKPPQEPDKPKRGL-LRIILPPLVMIAVTVLISIFQPRGIFIIAS 67
>gnl|CDD|100085 cd06164, S2P-M50_SpoIVFB_CBS, SpoIVFB Site-2 protease (S2P), a zinc
metalloprotease (MEROPS family M50B), regulates
intramembrane proteolysis (RIP), and is involved in the
pro-sigmaK pathway of bacterial spore formation. In this
subgroup, SpoIVFB (sporulation protein, stage IV cell
wall formation, F locus, promoter-distal B) contains two
tandem repeats of the cystathionine beta-synthase (CBS
pair) domain. SpoIVFB is one of 4 proteins involved in
endospore formation; the others are SpoIVFA (sporulation
protein, stage IV cell wall formation, F locus,
promoter-proximal A), BofA (bypass-of-forespore A), and
SpoIVB (sporulation protein, stage IV cell wall
formation, B locus). SpoIVFB is negatively regulated by
SpoIVFA and BofA and activated by SpoIVB. It is thought
that SpoIVFB, SpoIVFA, and BofA are located in the
mother-cell membrane that surrounds the forespore and
that SpoIVB is secreted from the forespore into the
space between the two where it activates SpoIVFB. It has
been proposed that the CBS domain may play a regulatory
role, although its exact function is unknown.
Length = 227
Score = 27.5 bits (62), Expect = 5.4
Identities = 11/45 (24%), Positives = 21/45 (46%)
Query: 87 AAFKISTVLCLVSVTLALVTIAVMLLFFFMQPTSVYMVAAWLQII 131
F I+ LVS+ LAL+ + + L + ++ +L +I
Sbjct: 97 QEFVIAIAGPLVSLVLALLFLLLSLALPGSGAGPLGVLLGYLALI 141
>gnl|CDD|224769 COG1856, COG1856, Uncharacterized homolog of biotin synthetase
[Function unknown].
Length = 275
Score = 27.5 bits (61), Expect = 6.0
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 13/83 (15%)
Query: 155 VIVPQLKEGKKILIAAHGNSLRGIV------KHLDNMSDEAIMGLNLPTGIPFVYE---- 204
+ K+G + + + G RG V L + + + +N G FV E
Sbjct: 47 RCMELEKKGYEGCLLSGGMDSRGKVPLWKFKDELKALKERTGLLINAHVG--FVDESDLE 104
Query: 205 -LDENLKPVVSMKFLGDEETVKK 226
L E L VVS+ F+GD + +K+
Sbjct: 105 KLKEELVDVVSLDFVGDNDVIKR 127
>gnl|CDD|212063 cd11494, SLC5sbd_NIS-like_u2, uncharacterized subgroup of the
Na(+)/iodide (NIS) cotransporter subfamily; putative
solute-binding domain. Proteins belonging to the same
subfamily as this uncharacterized subgroup include i)
NIS, which transports I-, and other anions including
ClO4-, SCN-, and Br-, ii) SMVT, which transports biotin,
pantothenic acid and lipoate, and iii) the
Na(+)/monocarboxylate cotransporters, SMCT1 and 2. SMCT1
is a high-affinity transporter while SMCT2 is a
low-affinity transporter. This subgroup belongs to the
solute carrier 5 (SLC5) transporter family.
Length = 481
Score = 27.6 bits (62), Expect = 6.1
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 18 YVRNSKAVGVLWGIFTLCFALIVS 41
Y++ S+ + V WG+ + FAL +
Sbjct: 378 YLKVSRLLTVFWGLLAIVFALFFA 401
>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor
regulator (CFTR). The model describes the cystis
fibrosis transmembrane conductor regulator (CFTR) in
eukaryotes. The principal role of this protein is
chloride ion conductance. The protein is predicted to
consist of 12 transmembrane domains. Mutations or
lesions in the genetic loci have been linked to the
aetiology of asthma, bronchiectasis, chronic obstructive
pulmonary disease etc. Disease-causing mutations have
been studied by 36Cl efflux assays in vitro cell
cultures and electrophysiology, all of which point to
the impairment of chloride channel stability and not the
biosynthetic processing per se [Transport and binding
proteins, Anions].
Length = 1490
Score = 28.0 bits (62), Expect = 6.3
Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Query: 63 SCEFDVNGFEECTGKFAEFMEISNAAFKISTVLCLVSVTLALVTIAVMLLFFFMQPTSVY 122
S E + +EC FA+ E +T L ++ LV + + L F+ +
Sbjct: 828 SEEINEEDLKEC---FADERENVFETTTWNTYLRYITTNRNLVFVLIFCLVIFLAEVAAS 884
Query: 123 MVAAWL 128
++ WL
Sbjct: 885 LLGLWL 890
>gnl|CDD|222783 PHA00350, PHA00350, putative assembly protein.
Length = 399
Score = 27.5 bits (61), Expect = 7.8
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 155 VIVPQLKEGKKILIAAHGNSLRGIVKHLDNMSDEA 189
I+P LK+G+K++ G +L K A
Sbjct: 22 HIIPALKDGRKVITNIPGLNLDVFEKVFGEFPSTA 56
>gnl|CDD|180945 PRK07363, PRK07363, NAD(P)H-quinone oxidoreductase subunit M;
Validated.
Length = 501
Score = 27.4 bits (61), Expect = 9.1
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 75 TGKFAEFM--EISNAAFKISTVLCLVSVTLALVTIAVML 111
G AEF+ + S + F I T+LC+V+ L V ++L
Sbjct: 389 VGFVAEFIVFQGSFSTFPIPTLLCIVASGLTAVYFVILL 427
>gnl|CDD|198410 cd10428, LFG_like, Proteins similar to and including lifeguard
(LFG), a putative regulator of apoptosis. Lifeguard
(LFG) inhibits Fas-mediated apoptosis and interacts with
the death receptor FasR/CD95/Apo1. LFG has been shown to
interact with Bax and is supposed to be integral to
cellular membranes such as the ER. A close homolog,
PP1201 or RECS1, appears located in the Golgi
compartment and also interacts with the Fas receptor
CD95/Apo1. PP1201 is expressed in response to shear
stress.
Length = 217
Score = 26.7 bits (60), Expect = 9.8
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 87 AAFKISTVLCLVSVTLALVTIAVMLLFFFMQPTSVYMVAAW 127
AF I V ++++ L LVT+AV+ LF F P ++
Sbjct: 9 RAF-IRKVYSILTIQL-LVTVAVIALFTFHDPVKKFVRKNP 47
>gnl|CDD|182635 PRK10671, copA, copper exporting ATPase; Provisional.
Length = 834
Score = 27.0 bits (60), Expect = 9.8
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 83 EISNAAFKISTVLCLVSVTLALVTIAVMLLFFFMQPTSVY--MVAAWLQIIS 132
EI A KIS V V V +ALV+ A+ FF P VY ++A + II+
Sbjct: 428 EIGQLADKISAVFVPVVVVIALVSAAIW-YFFGPAPQIVYTLVIATTVLIIA 478
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.136 0.405
Gapped
Lambda K H
0.267 0.0657 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,169,712
Number of extensions: 1159491
Number of successful extensions: 1627
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1619
Number of HSP's successfully gapped: 67
Length of query: 241
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 147
Effective length of database: 6,768,326
Effective search space: 994943922
Effective search space used: 994943922
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.3 bits)