RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11844
(241 letters)
>2hhj_A Bisphosphoglycerate mutase; isomerase; HET: NEP DG2 3PG; 1.50A
{Homo sapiens} SCOP: c.60.1.1 PDB: 1t8p_A* 2f90_A*
2a9j_A* 2h4z_A* 2h52_A* 2h4x_A* 3nfy_A
Length = 267
Score = 216 bits (553), Expect = 1e-70
Identities = 54/112 (48%), Positives = 77/112 (68%)
Query: 126 AWLQIISEEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNM 185
+ ++ P ESLK +ER LPYWN I P++ GK ILI+AHGNS R ++KHL+ +
Sbjct: 143 KVCDVPLDQLPRSESLKDVLERLLPYWNERIAPEVLRGKTILISAHGNSSRALLKHLEGI 202
Query: 186 SDEAIMGLNLPTGIPFVYELDENLKPVVSMKFLGDEETVKKAMEAVANQGKA 237
SDE I+ + LPTG+P + ELDENL+ V +FLGD+E ++ A++ V +QGK
Sbjct: 203 SDEDIINITLPTGVPILLELDENLRAVGPHQFLGDQEAIQAAIKKVEDQGKV 254
>1yfk_A Phosphoglycerate mutase 1; alpha/beta, isomerase, hydrolase; HET:
CIT; 2.70A {Homo sapiens} PDB: 1yjx_A*
Length = 262
Score = 214 bits (548), Expect = 5e-70
Identities = 78/108 (72%), Positives = 92/108 (85%)
Query: 130 IISEEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMSDEA 189
+ ++ P ESLK TI R LP+WN IVPQ+KEGK++LIAAHGNSLRGIVKHL+ +S+EA
Sbjct: 145 LTEDQLPSCESLKDTIARALPFWNEEIVPQIKEGKRVLIAAHGNSLRGIVKHLEGLSEEA 204
Query: 190 IMGLNLPTGIPFVYELDENLKPVVSMKFLGDEETVKKAMEAVANQGKA 237
IM LNLPTGIP VYELD+NLKP+ M+FLGDEETV+KAMEAVA QGKA
Sbjct: 205 IMELNLPTGIPIVYELDKNLKPIKPMQFLGDEETVRKAMEAVAAQGKA 252
>1rii_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; phosphoglyerate
mutase, SH3 domain binding, structural genom TBSGC;
1.70A {Mycobacterium tuberculosis} SCOP: c.60.1.1
Length = 265
Score = 212 bits (541), Expect = 6e-69
Identities = 51/104 (49%), Positives = 66/104 (63%)
Query: 134 EFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMSDEAIMGL 193
P+ E L + R LPY+ +VIV L+ GK +LI AHGNSLR +VKHLD MSD+ I+GL
Sbjct: 146 GGPLTECLADVVARFLPYFTDVIVGDLRVGKTVLIVAHGNSLRALVKHLDQMSDDEIVGL 205
Query: 194 NLPTGIPFVYELDENLKPVVSMKFLGDEETVKKAMEAVANQGKA 237
N+PTGIP Y+LD ++P+V D E AVA QG+
Sbjct: 206 NIPTGIPLRYDLDSAMRPLVRGGTYLDPEAAAAGAAAVAGQGRG 249
>1e58_A Phosphoglycerate mutase; phosphohistidine, glycolysis and
gluconeogenesis, isomerase; HET: NEP; 1.25A {Escherichia
coli} SCOP: c.60.1.1 PDB: 1e59_A*
Length = 249
Score = 208 bits (532), Expect = 7e-68
Identities = 59/108 (54%), Positives = 82/108 (75%), Gaps = 1/108 (0%)
Query: 130 IISEEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMSDEA 189
+ +E P+ ESL LTI+R +PYWN I+P++K G++++IAAHGNSLR +VK+LDNMS+E
Sbjct: 142 LSEKELPLTESLALTIDRVIPYWNETILPRMKSGERVIIAAHGNSLRALVKYLDNMSEEE 201
Query: 190 IMGLNLPTGIPFVYELDENLKPVVSMKFLGDEETVKKAMEAVANQGKA 237
I+ LN+PTG+P VYE DEN KP + +LG+ + + AVANQGKA
Sbjct: 202 ILELNIPTGVPLVYEFDENFKP-LKRYYLGNADEIAAKAAAVANQGKA 248
>3d8h_A Glycolytic phosphoglycerate mutase; structural genomics, malaria,
glycolysis, I structural genomics consortium, SGC; 2.01A
{Cryptosporidium parvum}
Length = 267
Score = 208 bits (533), Expect = 1e-67
Identities = 51/108 (47%), Positives = 68/108 (62%), Gaps = 1/108 (0%)
Query: 130 IISEEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMSDEA 189
I P E LK T+ER PY+ +VI P + GK +L++AHGNSLR ++ L+ M+ E
Sbjct: 160 ICPSCLPTTECLKDTVERVKPYFEDVIAPSIMSGKSVLVSAHGNSLRALLYLLEGMTPEQ 219
Query: 190 IMGLNLPTGIPFVYELDENLKPVVSMKFLGDEETVKKAMEAVANQGKA 237
I+ +N+PT P V ELD+ LK +L EE +K MEAVANQGKA
Sbjct: 220 ILEVNIPTACPLVLELDDYLKV-TKKYYLISEEELKAKMEAVANQGKA 266
>3gp3_A 2,3-bisphosphoglycerate-dependent phosphoglycerat;
phosphoglyceromutase, decode, SBRI, niaid, UWPPG,
glycolysis isomerase; HET: PG4 SEP; 1.50A {Burkholderia
pseudomallei} PDB: 3fdz_A* 3ezn_A* 3gp5_A* 3gw8_A*
3lnt_A
Length = 257
Score = 208 bits (531), Expect = 1e-67
Identities = 58/110 (52%), Positives = 78/110 (70%), Gaps = 1/110 (0%)
Query: 130 IISEEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMSDEA 189
+ E+ P+ E LK T+ R LP WN I P +K GK++LIAAHGNSLR ++K+LD +SD
Sbjct: 149 VPREQLPLTECLKDTVARVLPLWNESIAPAVKAGKQVLIAAHGNSLRALIKYLDGISDAD 208
Query: 190 IMGLNLPTGIPFVYELDENLKPVVSMKFLGDEETVKKAMEAVANQGKANT 239
I+GLN+P G+P VYELDE+L P + +LGD+E + KA AVA QGK+
Sbjct: 209 IVGLNIPNGVPLVYELDESLTP-IRHYYLGDQEAIAKAQAAVAQQGKSAA 257
>4emb_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; structural
genomics, niaid, national institute of allergy AN
infectious diseases; 2.30A {Borrelia burgdorferi}
Length = 274
Score = 208 bits (531), Expect = 2e-67
Identities = 58/108 (53%), Positives = 80/108 (74%), Gaps = 1/108 (0%)
Query: 130 IISEEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMSDEA 189
I E P E LK T+ R +PYW + I ++ EGKK+++AAHGNSLR +VK+ DN+S+E
Sbjct: 167 IPKRELPSTECLKDTVARVIPYWTDEIAKEVLEGKKVIVAAHGNSLRALVKYFDNLSEED 226
Query: 190 IMGLNLPTGIPFVYELDENLKPVVSMKFLGDEETVKKAMEAVANQGKA 237
++ LN+PTGIP VYELD++L P + +LGDE +KKAME+VA+QGK
Sbjct: 227 VLKLNIPTGIPLVYELDKDLNP-IKHYYLGDESKIKKAMESVASQGKL 273
>3kkk_A Phosphoglycerate mutase; PGAM, glycolysis, malaria, structural
genomics, medical STRU genomics of pathogenic protozoa,
MSGPP; 2.08A {Plasmodium falciparum 3D7} PDB: 1xq9_A
Length = 258
Score = 206 bits (527), Expect = 5e-67
Identities = 59/108 (54%), Positives = 79/108 (73%), Gaps = 1/108 (0%)
Query: 130 IISEEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMSDEA 189
+ + P E LK T+ER LP+W + I P + KK+++AAHGNSLRG+VKHLDN+S+
Sbjct: 151 VPKDALPFTECLKDTVERVLPFWFDHIAPDILANKKVMVAAHGNSLRGLVKHLDNLSEAD 210
Query: 190 IMGLNLPTGIPFVYELDENLKPVVSMKFLGDEETVKKAMEAVANQGKA 237
++ LN+PTG+P VYELDENLKP + +L D E +KK M+ VANQGKA
Sbjct: 211 VLELNIPTGVPLVYELDENLKP-IKHYYLLDSEELKKKMDEVANQGKA 257
>4eo9_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; structural
genomics, niaid, national institute of allergy AN
infectious diseases; 2.45A {Mycobacterium leprae}
Length = 268
Score = 196 bits (500), Expect = 1e-62
Identities = 51/103 (49%), Positives = 68/103 (66%), Gaps = 4/103 (3%)
Query: 134 EFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMSDEAIMGL 193
P+ E L + R LPY+ +VIVP L+ G+ +LI AHGNSLR +VKHLD MSD+ ++GL
Sbjct: 169 GGPLTECLADVVTRFLPYFTDVIVPDLRTGRTVLIVAHGNSLRALVKHLDEMSDDEVVGL 228
Query: 194 NLPTGIPFVYELDENLKPVVSMKFLGDEETVKKAMEAVANQGK 236
N+PTGIP Y+LD +L+PVV D E A AV +Q +
Sbjct: 229 NVPTGIPLRYDLDADLRPVVPGGTYLDPE----AAAAVISQAR 267
>1qhf_A Protein (phosphoglycerate mutase); transferase (phosphoryl); HET:
3PG; 1.70A {Saccharomyces cerevisiae} SCOP: c.60.1.1
PDB: 5pgm_D 1bq3_D* 1bq4_D 4pgm_A 3pgm_A*
Length = 240
Score = 192 bits (490), Expect = 1e-61
Identities = 53/102 (51%), Positives = 64/102 (62%), Gaps = 1/102 (0%)
Query: 130 IISEEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMSDEA 189
+ P ESL L I+R LPYW +VI L GK ++IAAHGNSLRG+VKHL+ +SD
Sbjct: 140 VDPNVLPETESLALVIDRLLPYWQDVIAKDLLSGKTVMIAAHGNSLRGLVKHLEGISDAD 199
Query: 190 IMGLNLPTGIPFVYELDENLKPVVSMKFLGDEETVKKAMEAV 231
I LN+PTGIP V+ELDENLKP + D E AV
Sbjct: 200 IAKLNIPTGIPLVFELDENLKPSKPS-YYLDPEAAAAGAAAV 240
>1fzt_A Phosphoglycerate mutase; open B-sheet-helices, isomerase; NMR
{Schizosaccharomyces pombe} SCOP: c.60.1.1
Length = 211
Score = 166 bits (422), Expect = 1e-51
Identities = 39/85 (45%), Positives = 58/85 (68%), Gaps = 1/85 (1%)
Query: 136 PMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMSDEAIMGLNL 195
P ESLK T ER LPY+ + IVP + +G+K+LIAAHGNSLR ++ L+ ++ + I+ L
Sbjct: 128 PNGESLKDTAERVLPYYKSTIVPHILKGEKVLIAAHGNSLRALIMDLEGLTGDQIVKREL 187
Query: 196 PTGIPFVYELDENLKPVVSMKFLGD 220
TG+P VY LD++ K VS + + +
Sbjct: 188 ATGVPIVYHLDKDGKY-VSKELIDN 211
>3dcy_A Regulator protein; OMIM 610775, C12ORF5, tigar, TP53-induced
glycolysis and apoptosis regulator, CAsp target,
structural genomics medical relevance; HET: MSE; 1.75A
{Homo sapiens}
Length = 275
Score = 137 bits (348), Expect = 4e-40
Identities = 16/117 (13%), Positives = 37/117 (31%), Gaps = 18/117 (15%)
Query: 131 ISEEFPMFESLKLTIERTLPYWNNVIVPQLKE------GKKILIAAHGNSLRGIVKHL-- 182
+ L+ ++ P N + +L+ +HG +R + +
Sbjct: 157 QFSQGSPSNCLETSLAEIFPLGKNHSSKVNSDSGIPGLAASVLVVSHGAYMRSLFDYFLT 216
Query: 183 -------DNMSDEAIMGLNLPTGIPFV---YELDENLKPVVSMKFLGDEETVKKAME 229
+S +M + TG+ +E +KP V + ++ + E
Sbjct: 217 DLKCSLPATLSRSELMSVTPNTGMSLFIINFEEGREVKPTVQCICMNLQDHLNGLTE 273
>3r7a_A Phosphoglycerate mutase, putative; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG;
HET: MSE EPE; 1.84A {Bacillus anthracis}
Length = 237
Score = 93.5 bits (233), Expect = 2e-23
Identities = 20/100 (20%), Positives = 40/100 (40%), Gaps = 8/100 (8%)
Query: 133 EEFPMFESLKLTIERTLPYWNNVIVPQLKE-GKKILIAAHGNSLRGIVKHLDNMSDEAIM 191
+ E +L R + + K+ G +L+ HG + +++ LD+ +
Sbjct: 143 DPTKQAEDWELFSTRIKAEIDKISEEAAKDGGGNVLVVVHGLLITTLIEMLDSSKT--KL 200
Query: 192 GLNLPTGIPFVYELDENLKPVVSMKFLGDEETVKKAMEAV 231
G+ + VY ++ V + +GD V K E+V
Sbjct: 201 GVENASVTKIVY---QDGIYTV--ESVGDMSYVAKGKESV 235
>3mbk_A Ubiquitin-associated and SH3 domain-containing PR; PGM, STS-1,
signaling protein, low PH, alternative splicing,
cytoplasm, nucleus, phosphoprotein; 1.35A {Mus musculus}
PDB: 2ikq_A 2h0q_A
Length = 264
Score = 87.0 bits (215), Expect = 1e-20
Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 1/70 (1%)
Query: 133 EEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMSDEAIMG 192
+ + ES I R+ +I +G ILI AH +SL L +S +
Sbjct: 155 SKLAISESYDTYINRSFQVTKEIISECKSKGNNILIVAHASSLEACTCQLQGLSPQNSKD 214
Query: 193 L-NLPTGIPF 201
+ IP+
Sbjct: 215 FVQMVRKIPY 224
>3f3k_A Uncharacterized protein YKR043C; structural genomics,, PSI-2, prote
structure initiative; 1.75A {Saccharomyces cerevisiae}
PDB: 3lg2_A 3oi7_A* 3ll4_A*
Length = 265
Score = 85.5 bits (212), Expect = 3e-20
Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 5/73 (6%)
Query: 139 ESLK---LTIERTLPYWNNVIVPQLKEGK--KILIAAHGNSLRGIVKHLDNMSDEAIMGL 193
E+ + L + R + N+ EG+ I++ AHG++LR + +
Sbjct: 139 ETTQQIGLRLSRAIARIQNLHRKHQSEGRASDIMVFAHGHALRYFAAIWFGLGVQKKCET 198
Query: 194 NLPTGIPFVYELD 206
Y+ D
Sbjct: 199 IEEIQNVKSYDDD 211
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3
(6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...;
bifunctional enzyme, EDTA complex; HET: F6P EDT ADP;
2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B*
3qpu_A* 3qpv_A* 3qpw_A*
Length = 520
Score = 56.6 bits (136), Expect = 1e-09
Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 5/74 (6%)
Query: 135 FPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMSDEAIMGLN 194
+P ES + ++R P +L+ + +L+ H LR ++ + + S E + L
Sbjct: 357 YPTGESYQDLVQRLEPVI-----MELERQENVLVICHQAVLRCLLAYFLDKSAEEMPYLK 411
Query: 195 LPTGIPFVYELDEN 208
P
Sbjct: 412 CPLHTVLKLTPVAY 425
>2a6p_A Possible phosphoglycerate mutase GPM2; predicted phosphoglycerate
mutase, structural genomics, PSI, structure initiative;
2.20A {Mycobacterium tuberculosis}
Length = 208
Score = 54.9 bits (133), Expect = 2e-09
Identities = 12/95 (12%), Positives = 31/95 (32%), Gaps = 12/95 (12%)
Query: 131 ISEEFPMF----------ESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVK 180
I E P + ES+ +R + + + +L +HG+ R ++
Sbjct: 104 IRESEPDWLVWTHGCPAGESVAQVNDRADSAVALAL--EHMSSRDVLFVSHGHFSRAVIT 161
Query: 181 HLDNMSDEAIMGLNLPTGIPFVYELDENLKPVVSM 215
+ +PT + + ++ + +
Sbjct: 162 RWVQLPLAEGSRFAMPTASIGICGFEHGVRQLAVL 196
>1v37_A Phosphoglycerate mutase; riken structu genomics/proteomics
initiative, RSGI, structural genomics,; 1.40A {Thermus
thermophilus} SCOP: c.60.1.1 PDB: 1v7q_A 2hia_A 2pa0_A
2p2y_A 2p77_A 2p6m_A 2p9y_A 2p30_A 2ekz_A 2p9f_A 2p79_A
2p78_A 2p2z_A 2p75_A 2owe_A 2enu_A 2ekb_A 2p6o_A 2owd_A
2enw_A ...
Length = 177
Score = 51.8 bits (125), Expect = 1e-08
Identities = 13/71 (18%), Positives = 27/71 (38%), Gaps = 10/71 (14%)
Query: 139 ESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDN---MSDEAIMGLNL 195
ESL ER + + P ++ HG +R +++ L + + + ++
Sbjct: 108 ESLSAFQERVFRFLEGLKAP-------AVLFTHGGVVRAVLRALGEDGLVPPGSAVAVDW 160
Query: 196 PTGIPFVYELD 206
P + LD
Sbjct: 161 PRRVLVRLALD 171
>3c7t_A Ecdysteroid-phosphate phosphatase; ecdysone, 2H-phosphatase, PGM,
hydrolase; 1.76A {Bombyx mori}
Length = 263
Score = 51.6 bits (123), Expect = 4e-08
Identities = 10/57 (17%), Positives = 21/57 (36%)
Query: 133 EEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMSDEA 189
E E++ +R + K+G ++ H +L +V L + D+
Sbjct: 154 EMDASAETMDEFFKRGEVAMQAAVNDTEKDGGNVIFIGHAITLDQMVGALHRLRDDM 210
>3d4i_A STS-2 protein; PGM, 2H-phosphatase, PTP, SH3 domain, hydrolase;
1.95A {Mus musculus} PDB: 3d6a_A 3db1_A
Length = 273
Score = 51.3 bits (122), Expect = 5e-08
Identities = 16/90 (17%), Positives = 31/90 (34%), Gaps = 6/90 (6%)
Query: 127 WLQIISEEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMS 186
+ ES +ER +I ++ LI +H ++L + L +
Sbjct: 158 RPALPRCSLMPAESYDQYVERCAVSMGQIINTCPQDMGITLIVSHSSALDSCTRPLLGLP 217
Query: 187 DEAI-----MGLNLPT-GIPFVYELDENLK 210
+ +P+ G+ F E E+ K
Sbjct: 218 PRECGDFAQLVRKIPSLGMCFCEENREDGK 247
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase
(phospho), phosphatase, hydrolase (phosp glycolysis,
bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus}
SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A*
1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Length = 469
Score = 51.2 bits (122), Expect = 8e-08
Identities = 14/75 (18%), Positives = 31/75 (41%), Gaps = 7/75 (9%)
Query: 134 EFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMSDEAIMGL 193
+P ES + ++R P +L+ + +L+ H +R ++ + + + E + L
Sbjct: 359 RYPKGESYEDLVQRLEPVIM-----ELERQENVLVICHQAVMRCLLAYFLDKAAEELPYL 413
Query: 194 NLPTGIPFVYELDEN 208
P V +L
Sbjct: 414 KCPLHT--VLKLTPV 426
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.4 bits (112), Expect = 2e-06
Identities = 37/178 (20%), Positives = 57/178 (32%), Gaps = 55/178 (30%)
Query: 79 AEFMEISNAAFKISTVLCLVSVTLA----------LVTIAVMLLFF----FMQPTSVYMV 124
E A S L + +V +A V A+ +LFF + +
Sbjct: 261 GELRSYLKGATGHSQGL-VTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSL 319
Query: 125 AAWLQIISEEF------PMF-------ESLKLTIERTLPYWNNVIVPQLKEGKKILIAAH 171
+ S E PM E ++ + +T N +P GK++ I+
Sbjct: 320 PPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKT-----NSHLP---AGKQVEISLV 371
Query: 172 ---------GN--SLRGIVKHLDNMSDEAIMGLNLPTGIPFVYELDENLKPVVSMKFL 218
G SL G+ L A GL+ + IPF K S +FL
Sbjct: 372 NGAKNLVVSGPPQSLYGLNLTLRKAK--APSGLD-QSRIPF-----SERKLKFSNRFL 421
Score = 30.8 bits (69), Expect = 0.43
Identities = 26/137 (18%), Positives = 52/137 (37%), Gaps = 40/137 (29%)
Query: 103 ALVTIA-VM-------LLFF---FMQ---------PTSVYMVAAWLQIISEEFPMFESLK 142
AL ++A VM ++F+ MQ ++ M+A ++ F E+L+
Sbjct: 1769 ALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQ-EALQ 1827
Query: 143 LTIERTLP----------YWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMSDEAIMG 192
+ER Y NV E ++ + A +L + L+ + + I
Sbjct: 1828 YVVERVGKRTGWLVEIVNY--NV------ENQQYVAAGDLRALDTVTNVLNFIKLQKIDI 1879
Query: 193 LNLPTGIPFVYELDENL 209
+ L + E++ +L
Sbjct: 1880 IELQKSLSL-EEVEGHL 1895
>1h2e_A Phosphatase, YHFR; hydrolase, broad specificity phosphatase, DPGM
homolog; 1.69A {Bacillus stearothermophilus} SCOP:
c.60.1.1 PDB: 1h2f_A* 1ebb_A
Length = 207
Score = 43.3 bits (103), Expect = 1e-05
Identities = 10/52 (19%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 139 ESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMSDEAI 190
E +R L +++ EG+ +LI HG L+ ++ + + +
Sbjct: 120 ERFCDVQQRALEAVQSIV--DRHEGETVLIVTHGVVLKTLMAAFKDTPLDHL 169
>3e9c_A ZGC:56074; histidine phosphatase, hydrolase; 2.00A {Danio rerio}
PDB: 3e9d_A 3e9e_A
Length = 265
Score = 41.7 bits (98), Expect = 9e-05
Identities = 21/135 (15%), Positives = 41/135 (30%), Gaps = 19/135 (14%)
Query: 123 MVAAWLQIISEEFPMFESLKLTIERTLPYWNNVIVPQLKE------GKKILIAAHGNSLR 176
+ MFE + + ++ L + L+ +HG +R
Sbjct: 132 FKMFLKSLFQ---RMFEEHGSALSSVPSEADQPVIAGLADDGAQNVPVHALMVSHGAFIR 188
Query: 177 GIVKHL---------DNMSDEAIMGLNLPTGI-PFVYELDENLKPVVSMKFLGDEETVKK 226
V+HL + + TGI F++ + + + + G K
Sbjct: 189 ISVRHLVEDLQCCLPAGLKMNQVFSPCPNTGISRFIFTIHREESVLRATRIQGVFINRKD 248
Query: 227 AMEAVANQGKANTRH 241
+E V N + H
Sbjct: 249 HLEEVKNSDLEHHHH 263
Score = 34.4 bits (79), Expect = 0.020
Identities = 10/72 (13%), Positives = 20/72 (27%), Gaps = 8/72 (11%)
Query: 125 AAWLQIISEEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDN 184
AA P E+L+ R + ++ + HG++L + D
Sbjct: 109 AAGQSCRDYTPPGGETLEQVKTRFKMFLKSLFQR--------MFEEHGSALSSVPSEADQ 160
Query: 185 MSDEAIMGLNLP 196
+
Sbjct: 161 PVIAGLADDGAQ 172
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.5 bits (86), Expect = 0.003
Identities = 27/185 (14%), Positives = 56/185 (30%), Gaps = 49/185 (26%)
Query: 88 AFKISTVLC--LV-----SVTLALVTIA------VMLLFFFMQPTSVYMVAAWLQIISEE 134
AF +S C L+ VT L ++ +L ++
Sbjct: 261 AFNLS---CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317
Query: 135 FPMFESLKLTIERTLPYWNNVIVPQLKEG-------KKILIAAHGNSLRGIVKHLDNMSD 187
P E L T P ++I +++G K + + + L+
Sbjct: 318 LPR-EVLT-----TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE--PA 369
Query: 188 E--------AIM--GLNLPTGIPFVYE-LDENLKPVVSMKFLGDEETVKKAMEAVANQGK 236
E ++ ++PT + + ++ M + + K ++ V Q K
Sbjct: 370 EYRKMFDRLSVFPPSAHIPTI---LLSLIWFDVIKSDVMVVV--NKLHKYSL--VEKQPK 422
Query: 237 ANTRH 241
+T
Sbjct: 423 ESTIS 427
>3eoz_A Putative phosphoglycerate mutase; PGAM, malaria, structural
genomics, isomerase, structural GE consortium, SGC;
2.40A {Plasmodium falciparum}
Length = 214
Score = 30.9 bits (70), Expect = 0.25
Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 4/64 (6%)
Query: 158 PQLKEGKKILIAAHGNSLRGIVKHLDNMSDEAIMGLNL-PTGIPFVYELDENLKPVVSMK 216
P E + L+ HGN +R + + A + + GI LD+ V+ +
Sbjct: 142 PSGDEDEYQLVICHGNVIRYFLCRALQIPLFAWLRFSSYNCGI-TWLVLDDEGSVVL--R 198
Query: 217 FLGD 220
G
Sbjct: 199 EFGS 202
>2qni_A AGR_C_517P, uncharacterized protein ATU0299; MCSG, in SITU
proteolysis, structural genomics, PSI protein structure
initiative; 1.80A {Agrobacterium tumefaciens str}
Length = 219
Score = 30.2 bits (68), Expect = 0.40
Identities = 8/64 (12%), Positives = 18/64 (28%), Gaps = 1/64 (1%)
Query: 123 MVAAWLQIISEEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHL 182
+ E F +E R + ++ + + I HG + H+
Sbjct: 116 AADWFFAHPEESFQGWERAIDAQARIVEAVKA-VLDRHDARQPIAFVGHGGVGTLLKCHI 174
Query: 183 DNMS 186
+
Sbjct: 175 EGRG 178
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide
transferase; purine ribonucleotide biosynthesis; HET:
ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Length = 433
Score = 30.7 bits (70), Expect = 0.45
Identities = 8/44 (18%), Positives = 13/44 (29%)
Query: 189 AIMGLNLPTGIPFVYELDENLKPVVSMKFLGDEETVKKAMEAVA 232
A++GL +P Y L L P + +
Sbjct: 320 AVLGLPIPGEWVDGYRLFPMLIPAATHVIKAKVSGYSPRFRGLV 363
>3hjg_A Putative alpha-ribazole-5'-phosphate phosphatase COBC; PSI-2,
NYSGXRC, structural genomics, protein structure
initiative; 2.80A {Vibrio parahaemolyticus}
Length = 213
Score = 29.9 bits (68), Expect = 0.54
Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
Query: 125 AAWLQIISEEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHL 182
A W P ESL +R W+ +I +LI HG +R I+ H+
Sbjct: 106 AFWQSPAHHSLPNAESLSTFSQRVSRAWSQIIN---DINDNLLIVTHGGVIRIILAHV 160
>1va6_A Glutamate--cysteine ligase; glutathione homeostasis, beta barrel,
peptide synthesis, transition state analogue; HET: P2S
ADP P6G; 2.10A {Escherichia coli} SCOP: d.128.1.4 PDB:
1v4g_A* 2d32_A* 2d33_A*
Length = 518
Score = 27.5 bits (60), Expect = 5.0
Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 152 WNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMSDEAIMG--LNLPTGIPFVYELDENL 209
W + + EG+ I +A +G S G K L + G + +G+ + + L
Sbjct: 100 WPLSMPSYIAEGQDIELAQYGTSNTGRFKTLYREGLKNRYGALMQTISGVHYNFSLPMAF 159
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.136 0.405
Gapped
Lambda K H
0.267 0.0787 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,650,756
Number of extensions: 217214
Number of successful extensions: 504
Number of sequences better than 10.0: 1
Number of HSP's gapped: 491
Number of HSP's successfully gapped: 41
Length of query: 241
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 150
Effective length of database: 4,160,982
Effective search space: 624147300
Effective search space used: 624147300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.2 bits)