RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11844
(241 letters)
>d2hhja1 c.60.1.1 (A:3-250) Phosphoglycerate mutase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 248
Score = 132 bits (333), Expect = 1e-38
Identities = 51/107 (47%), Positives = 74/107 (69%)
Query: 127 WLQIISEEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMS 186
+ ++ P ESLK +ER LPYWN I P++ GK ILI+AHGNS R ++KHL+ +S
Sbjct: 142 VCDVPLDQLPRSESLKDVLERLLPYWNERIAPEVLRGKTILISAHGNSSRALLKHLEGIS 201
Query: 187 DEAIMGLNLPTGIPFVYELDENLKPVVSMKFLGDEETVKKAMEAVAN 233
DE I+ + LPTG+P + ELDENL+ V +FLGD+E ++ A++ V +
Sbjct: 202 DEDIINITLPTGVPILLELDENLRAVGPHQFLGDQEAIQAAIKKVED 248
>d1e58a_ c.60.1.1 (A:) Phosphoglycerate mutase {Escherichia coli
[TaxId: 562]}
Length = 247
Score = 123 bits (308), Expect = 6e-35
Identities = 58/110 (52%), Positives = 83/110 (75%), Gaps = 1/110 (0%)
Query: 127 WLQIISEEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMS 186
+ ++ +E P+ ESL LTI+R +PYWN I+P++K G++++IAAHGNSLR +VK+LDNMS
Sbjct: 139 YAKLSEKELPLTESLALTIDRVIPYWNETILPRMKSGERVIIAAHGNSLRALVKYLDNMS 198
Query: 187 DEAIMGLNLPTGIPFVYELDENLKPVVSMKFLGDEETVKKAMEAVANQGK 236
+E I+ LN+PTG+P VYE DEN KP + +LG+ + + AVANQGK
Sbjct: 199 EEEILELNIPTGVPLVYEFDENFKP-LKRYYLGNADEIAAKAAAVANQGK 247
>d1xq9a_ c.60.1.1 (A:) Phosphoglycerate mutase {Plasmodium
falciparum [TaxId: 5833]}
Length = 241
Score = 110 bits (275), Expect = 3e-30
Identities = 52/104 (50%), Positives = 73/104 (70%), Gaps = 1/104 (0%)
Query: 126 AWLQIISEEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNM 185
+ + + P E LK T+ER LP+W + I P + KK+++AAHGNSLRG+VKHLDN+
Sbjct: 139 VYKNVPKDALPFTECLKDTVERVLPFWFDHIAPDILANKKVMVAAHGNSLRGLVKHLDNL 198
Query: 186 SDEAIMGLNLPTGIPFVYELDENLKPVVSMKFLGDEETVKKAME 229
S+ ++ LN+PTG+P VYELDENLKP + +L D E +KK M+
Sbjct: 199 SEADVLELNIPTGVPLVYELDENLKP-IKHYYLLDSEELKKKMD 241
>d1qhfa_ c.60.1.1 (A:) Phosphoglycerate mutase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 240
Score = 107 bits (267), Expect = 4e-29
Identities = 53/105 (50%), Positives = 65/105 (61%), Gaps = 1/105 (0%)
Query: 127 WLQIISEEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMS 186
+ + P ESL L I+R LPYW +VI L GK ++IAAHGNSLRG+VKHL+ +S
Sbjct: 137 YKYVDPNVLPETESLALVIDRLLPYWQDVIAKDLLSGKTVMIAAHGNSLRGLVKHLEGIS 196
Query: 187 DEAIMGLNLPTGIPFVYELDENLKPVVSMKFLGDEETVKKAMEAV 231
D I LN+PTGIP V+ELDENLKP + D E AV
Sbjct: 197 DADIAKLNIPTGIPLVFELDENLKP-SKPSYYLDPEAAAAGAAAV 240
>d1riia_ c.60.1.1 (A:) Phosphoglycerate mutase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 243
Score = 103 bits (258), Expect = 1e-27
Identities = 49/99 (49%), Positives = 63/99 (63%)
Query: 134 EFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMSDEAIMGL 193
P+ E L + R LPY+ +VIV L+ GK +LI AHGNSLR +VKHLD MSD+ I+GL
Sbjct: 145 GGPLTECLADVVARFLPYFTDVIVGDLRVGKTVLIVAHGNSLRALVKHLDQMSDDEIVGL 204
Query: 194 NLPTGIPFVYELDENLKPVVSMKFLGDEETVKKAMEAVA 232
N+PTGIP Y+LD ++P+V D E AVA
Sbjct: 205 NIPTGIPLRYDLDSAMRPLVRGGTYLDPEAAAAGAAAVA 243
>d1fzta_ c.60.1.1 (A:) Phosphoglycerate mutase {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 211
Score = 84.3 bits (207), Expect = 2e-20
Identities = 43/99 (43%), Positives = 60/99 (60%), Gaps = 2/99 (2%)
Query: 122 YMVAAWLQIISEEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKH 181
V W + P ESLK T ER LPY+ + IVP + +G+K+LIAAHGNSLR ++
Sbjct: 114 EQVQIWRRSYDIAPPNGESLKDTAERVLPYYKSTIVPHILKGEKVLIAAHGNSLRALIMD 173
Query: 182 LDNMSDEAIMGLNLPTGIPFVYELDENLKPVVSMKFLGD 220
L+ ++ + I+ L TG+P VY LD++ K V K L D
Sbjct: 174 LEGLTGDQIVKRELATGVPIVYHLDKDGKYVS--KELID 210
>d1bifa2 c.60.1.4 (A:250-468)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
phosphatase domain {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 219
Score = 51.8 bits (123), Expect = 9e-09
Identities = 12/92 (13%), Positives = 29/92 (31%), Gaps = 5/92 (5%)
Query: 113 FFFMQPTSVYMVAAWLQIISEEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHG 172
+ +P ES + ++R P +L+ + +L+ H
Sbjct: 88 EEIQDHYPLEFALRDQDKYRYRYPKGESYEDLVQRLEPVIM-----ELERQENVLVICHQ 142
Query: 173 NSLRGIVKHLDNMSDEAIMGLNLPTGIPFVYE 204
+R ++ + + + E + L P
Sbjct: 143 AVMRCLLAYFLDKAAEELPYLKCPLHTVLKLT 174
>d1v37a_ c.60.1.1 (A:) Alpha-ribazole-5'-phosphate phosphatase
{Thermus thermophilus [TaxId: 274]}
Length = 171
Score = 48.5 bits (114), Expect = 8e-08
Identities = 16/88 (18%), Positives = 31/88 (35%), Gaps = 10/88 (11%)
Query: 122 YMVAAWLQIISEEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKH 181
A L+ P ESL ER + + P + + HG +R +++
Sbjct: 91 RYKEALLRFQGFHPPGGESLSAFQERVFRFLEGLKAPAV-------LFTHGGVVRAVLRA 143
Query: 182 LDN---MSDEAIMGLNLPTGIPFVYELD 206
L + + + ++ P + LD
Sbjct: 144 LGEDGLVPPGSAVAVDWPRRVLVRLALD 171
>d1h2ea_ c.60.1.1 (A:) Broad specificity phosphatase PhoE (YhfR)
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 207
Score = 33.5 bits (75), Expect = 0.014
Identities = 13/73 (17%), Positives = 27/73 (36%), Gaps = 4/73 (5%)
Query: 158 PQLKEGKKILIAAHGNSLRGIVKHLDNMSDEAIMGLNLPTGIPF-VYELDENLKPVVSMK 216
EG+ +LI HG L+ ++ + + + G + E+D +
Sbjct: 137 VDRHEGETVLIVTHGVVLKTLMAAFKDTPLDHLWSPPYMYGTSVTIIEVDGG---TFHVA 193
Query: 217 FLGDEETVKKAME 229
GD +++ E
Sbjct: 194 VEGDVSHIEEVKE 206
>d2d32a1 d.128.1.4 (A:1-518) Gamma-glutamylcysteine synthetase GshA
{Escherichia coli [TaxId: 562]}
Length = 518
Score = 33.4 bits (76), Expect = 0.024
Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 152 WNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMSDEAIMG--LNLPTGIPFVYELDENL 209
W + + EG+ I +A +G S G K L + G + +G+ + + L
Sbjct: 100 WPLSMPSYIAEGQDIELAQYGTSNTGRFKTLYREGLKNRYGALMQTISGVHYNFSLPMAF 159
>d1peya_ c.23.1.1 (A:) Sporulation response regulator Spo0F
{Bacillus subtilis [TaxId: 1423]}
Length = 119
Score = 28.0 bits (62), Expect = 0.45
Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 6/77 (7%)
Query: 161 KEGKKILIAAHGNSLRGIVKHLDNMSDEAIMGLNLP--TGIPFVYELDENLK--PVVSMK 216
KEG + AA+G IV D ++ + +P GI + + + V+ M
Sbjct: 23 KEGYQTFQAANGLQALDIVT--KERPDLVLLDMKIPGMDGIEILKRMKVIDENIRVIIMT 80
Query: 217 FLGDEETVKKAMEAVAN 233
G+ + ++++ E A
Sbjct: 81 AYGELDMIQESKELGAL 97
>d1xb4a2 a.4.5.54 (A:126-199) Vacuolar protein sorting-associated
protein VPS25 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 74
Score = 24.2 bits (53), Expect = 5.5
Identities = 8/37 (21%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 202 VYELDENLKPVVSMKFLG-DEETVKKAMEAVANQGKA 237
+YEL E V+ +F E + ++ + ++ +A
Sbjct: 26 LYELSEG-DETVNWEFHRMPESLLYYCLKPLCDRNRA 61
>d1dz3a_ c.23.1.1 (A:) Sporulation response regulator Spo0A
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 123
Score = 24.8 bits (54), Expect = 6.0
Identities = 13/78 (16%), Positives = 30/78 (38%), Gaps = 5/78 (6%)
Query: 161 KEGKKILIAAHGNSLRGIVKHLDNMSDEAIMGLNLP--TGIPFVYELDENLK---PVVSM 215
+ +I N + + D ++ + +P G+ + + + V+ +
Sbjct: 23 SQPDMEVIGTAYNGQDCLQMLEEKRPDILLLDIIMPHLDGLAVLERIRAGFEHQPNVIML 82
Query: 216 KFLGDEETVKKAMEAVAN 233
G E+ KKA+E A+
Sbjct: 83 TAFGQEDVTKKAVELGAS 100
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.136 0.405
Gapped
Lambda K H
0.267 0.0432 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 872,534
Number of extensions: 39784
Number of successful extensions: 137
Number of sequences better than 10.0: 1
Number of HSP's gapped: 133
Number of HSP's successfully gapped: 17
Length of query: 241
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 158
Effective length of database: 1,268,006
Effective search space: 200344948
Effective search space used: 200344948
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)