BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11845
(215 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YFK|A Chain A, Crystal Structure Of Human B Type Phosphoglycerate Mutase
pdb|1YFK|B Chain B, Crystal Structure Of Human B Type Phosphoglycerate Mutase
pdb|1YJX|A Chain A, Crystal Structure Of Human B Type Phosphoglycerate Mutase
pdb|1YJX|B Chain B, Crystal Structure Of Human B Type Phosphoglycerate Mutase
pdb|1YJX|C Chain C, Crystal Structure Of Human B Type Phosphoglycerate Mutase
pdb|1YJX|D Chain D, Crystal Structure Of Human B Type Phosphoglycerate Mutase
pdb|1YJX|E Chain E, Crystal Structure Of Human B Type Phosphoglycerate Mutase
pdb|1YJX|F Chain F, Crystal Structure Of Human B Type Phosphoglycerate Mutase
pdb|1YJX|G Chain G, Crystal Structure Of Human B Type Phosphoglycerate Mutase
pdb|1YJX|H Chain H, Crystal Structure Of Human B Type Phosphoglycerate Mutase
pdb|1YJX|I Chain I, Crystal Structure Of Human B Type Phosphoglycerate Mutase
pdb|1YJX|J Chain J, Crystal Structure Of Human B Type Phosphoglycerate Mutase
pdb|1YJX|K Chain K, Crystal Structure Of Human B Type Phosphoglycerate Mutase
pdb|1YJX|L Chain L, Crystal Structure Of Human B Type Phosphoglycerate Mutase
Length = 262
Score = 194 bits (492), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 105/189 (55%), Positives = 127/189 (67%), Gaps = 22/189 (11%)
Query: 25 DVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLNERHYGGLTGLDKAATAAKYGEEQV 84
D+ TSV RA TL +L I Q LPV ++WRLNERHYGGLTGL+KA TAAK+GE QV
Sbjct: 53 DICFTSVQKRAIRTLWTVLDAIDQMWLPVVRTWRLNERHYGGLTGLNKAETAAKHGEAQV 112
Query: 85 LIWRRSFDIPPPAMEKDHTSGDCRNYEKLVMAKQNKKDHAYYSNIVDDPRYASEPSKEEF 144
IWRRS+D V + DH +YSNI D RYA + ++++
Sbjct: 113 KIWRRSYD---------------------VPPPPMEPDHPFYSNISKDRRYA-DLTEDQL 150
Query: 145 PMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMSDEAIMGLNL 204
P ESLK TI R LP+WN IVPQ+KEGK++LIAAHGNSLRGIVKHL+ +S+EAIM LNL
Sbjct: 151 PSCESLKDTIARALPFWNEEIVPQIKEGKRVLIAAHGNSLRGIVKHLEGLSEEAIMELNL 210
Query: 205 PTGIPFVTQ 213
PTGIP V +
Sbjct: 211 PTGIPIVYE 219
>pdb|1E58|A Chain A, E.Coli Cofactor-Dependent Phosphoglycerate Mutase
Length = 249
Score = 186 bits (473), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 96/189 (50%), Positives = 126/189 (66%), Gaps = 24/189 (12%)
Query: 25 DVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLNERHYGGLTGLDKAATAAKYGEEQV 84
D A+TSVL RA +TL +L + Q LPV KSW+LNERHYG L GL+KA TA KYG+EQV
Sbjct: 52 DFAYTSVLKRAIHTLWNVLDELDQAWLPVEKSWKLNERHYGALQGLNKAETAEKYGDEQV 111
Query: 85 LIWRRSFDIPPPAMEKDHTSGDCRNYEKLVMAKQNKKDHAYYSNIVDDPRYASEPSKEEF 144
WRR F + PP + KD D Y + DPRYA + S++E
Sbjct: 112 KQWRRGFAVTPPELTKD--------------------DERYPGH---DPRYA-KLSEKEL 147
Query: 145 PMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMSDEAIMGLNL 204
P+ ESL LTI+R +PYWN I+P++K G++++IAAHGNSLR +VK+LDNMS+E I+ LN+
Sbjct: 148 PLTESLALTIDRVIPYWNETILPRMKSGERVIIAAHGNSLRALVKYLDNMSEEEILELNI 207
Query: 205 PTGIPFVTQ 213
PTG+P V +
Sbjct: 208 PTGVPLVYE 216
>pdb|1E59|A Chain A, E.Coli Cofactor-Dependent Phosphoglycerate Mutase
Complexed With Vanadate
Length = 249
Score = 186 bits (472), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 96/189 (50%), Positives = 126/189 (66%), Gaps = 24/189 (12%)
Query: 25 DVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLNERHYGGLTGLDKAATAAKYGEEQV 84
D A+TSVL RA +TL +L + Q LPV KSW+LNERHYG L GL+KA TA KYG+EQV
Sbjct: 52 DFAYTSVLKRAIHTLWNVLDELDQAWLPVEKSWKLNERHYGALQGLNKAETAEKYGDEQV 111
Query: 85 LIWRRSFDIPPPAMEKDHTSGDCRNYEKLVMAKQNKKDHAYYSNIVDDPRYASEPSKEEF 144
WRR F + PP + KD D Y + DPRYA + S++E
Sbjct: 112 KQWRRGFAVTPPELTKD--------------------DERYPGH---DPRYA-KLSEKEL 147
Query: 145 PMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMSDEAIMGLNL 204
P+ ESL LTI+R +PYWN I+P++K G++++IAAHGNSLR +VK+LDNMS+E I+ LN+
Sbjct: 148 PLTESLALTIDRVIPYWNETILPRMKSGERVIIAAHGNSLRALVKYLDNMSEEEILELNI 207
Query: 205 PTGIPFVTQ 213
PTG+P V +
Sbjct: 208 PTGVPLVYE 216
>pdb|3FDZ|B Chain B, Crystal Structure Of Phosphoglyceromutase From
Burkholderia Pseudomallei 1710b With Bound
2,3-Diphosphoglyceric Acid And 3- Phosphoglyceric Acid
Length = 257
Score = 183 bits (465), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 97/190 (51%), Positives = 124/190 (65%), Gaps = 24/190 (12%)
Query: 25 DVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLNERHYGGLTGLDKAATAAKYGEEQV 84
D+A+TSVL RA TL + + +PV SWRLNERHYG L+GL+KA TAAKYG+EQV
Sbjct: 59 DIAYTSVLKRAIRTLWHVQDQMDLMYVPVVHSWRLNERHYGALSGLNKAETAAKYGDEQV 118
Query: 85 LIWRRSFDIPPPAMEKDHTSGDCRNYEKLVMAKQNKKDHAYYSNIVDDPRYASEPSKEEF 144
L+WRRS+D PPPA+E GD R A Y+ DPRYA P +E+
Sbjct: 119 LVWRRSYDTPPPALE----PGDER---------------APYA----DPRYAKVP-REQL 154
Query: 145 PMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMSDEAIMGLNL 204
P+ E LK T+ R LP WN I P +K GK++LIAAHGNSLR ++K+LD +SD I+GLN+
Sbjct: 155 PLTECLKDTVARVLPLWNESIAPAVKAGKQVLIAAHGNSLRALIKYLDGISDADIVGLNI 214
Query: 205 PTGIPFVTQC 214
P G+P V +
Sbjct: 215 PNGVPLVYEL 224
>pdb|3LNT|A Chain A, Crystal Structure Of Phosphoglyceromutase From
Burkholderia Pseudomallei 1710b With Bound Malonic Acid
pdb|3LNT|B Chain B, Crystal Structure Of Phosphoglyceromutase From
Burkholderia Pseudomallei 1710b With Bound Malonic Acid
Length = 250
Score = 183 bits (465), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 97/190 (51%), Positives = 124/190 (65%), Gaps = 24/190 (12%)
Query: 25 DVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLNERHYGGLTGLDKAATAAKYGEEQV 84
D+A+TSVL RA TL + + +PV SWRLNERHYG L+GL+KA TAAKYG+EQV
Sbjct: 52 DIAYTSVLKRAIRTLWHVQDQMDLMYVPVVHSWRLNERHYGALSGLNKAETAAKYGDEQV 111
Query: 85 LIWRRSFDIPPPAMEKDHTSGDCRNYEKLVMAKQNKKDHAYYSNIVDDPRYASEPSKEEF 144
L+WRRS+D PPPA+E GD R A Y+ DPRYA P +E+
Sbjct: 112 LVWRRSYDTPPPALE----PGDER---------------APYA----DPRYAKVP-REQL 147
Query: 145 PMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMSDEAIMGLNL 204
P+ E LK T+ R LP WN I P +K GK++LIAAHGNSLR ++K+LD +SD I+GLN+
Sbjct: 148 PLTECLKDTVARVLPLWNESIAPAVKAGKQVLIAAHGNSLRALIKYLDGISDADIVGLNI 207
Query: 205 PTGIPFVTQC 214
P G+P V +
Sbjct: 208 PNGVPLVYEL 217
>pdb|3EZN|A Chain A, Crystal Structure Of Phosphoglyceromutase From
Burkholderia Pseudomallei 1710b
pdb|3EZN|B Chain B, Crystal Structure Of Phosphoglyceromutase From
Burkholderia Pseudomallei 1710b
pdb|3FDZ|A Chain A, Crystal Structure Of Phosphoglyceromutase From
Burkholderia Pseudomallei 1710b With Bound
2,3-Diphosphoglyceric Acid And 3- Phosphoglyceric Acid
pdb|3GP3|A Chain A, Crystal Structure Of Phosphoglyceromutase From
Burkholderia Pseudomallei With 2-Phosphoserine
pdb|3GP3|B Chain B, Crystal Structure Of Phosphoglyceromutase From
Burkholderia Pseudomallei With 2-Phosphoserine
pdb|3GP3|C Chain C, Crystal Structure Of Phosphoglyceromutase From
Burkholderia Pseudomallei With 2-Phosphoserine
pdb|3GP3|D Chain D, Crystal Structure Of Phosphoglyceromutase From
Burkholderia Pseudomallei With 2-Phosphoserine
pdb|3GP5|A Chain A, Crystal Structure Of Phosphoglyceromutase From
Burkholderia Pseudomallei With 3-Phosphoglyceric Acid
And Vanadate
pdb|3GP5|B Chain B, Crystal Structure Of Phosphoglyceromutase From
Burkholderia Pseudomallei With 3-Phosphoglyceric Acid
And Vanadate
pdb|3GW8|A Chain A, Crystal Structure Of Phosphoglyceromutase From
Burkholderia Pseudomallei With Vanadate And Glycerol
pdb|3GW8|B Chain B, Crystal Structure Of Phosphoglyceromutase From
Burkholderia Pseudomallei With Vanadate And Glycerol
Length = 257
Score = 183 bits (465), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 97/190 (51%), Positives = 124/190 (65%), Gaps = 24/190 (12%)
Query: 25 DVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLNERHYGGLTGLDKAATAAKYGEEQV 84
D+A+TSVL RA TL + + +PV SWRLNERHYG L+GL+KA TAAKYG+EQV
Sbjct: 59 DIAYTSVLKRAIRTLWHVQDQMDLMYVPVVHSWRLNERHYGALSGLNKAETAAKYGDEQV 118
Query: 85 LIWRRSFDIPPPAMEKDHTSGDCRNYEKLVMAKQNKKDHAYYSNIVDDPRYASEPSKEEF 144
L+WRRS+D PPPA+E GD R A Y+ DPRYA P +E+
Sbjct: 119 LVWRRSYDTPPPALE----PGDER---------------APYA----DPRYAKVP-REQL 154
Query: 145 PMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMSDEAIMGLNL 204
P+ E LK T+ R LP WN I P +K GK++LIAAHGNSLR ++K+LD +SD I+GLN+
Sbjct: 155 PLTECLKDTVARVLPLWNESIAPAVKAGKQVLIAAHGNSLRALIKYLDGISDADIVGLNI 214
Query: 205 PTGIPFVTQC 214
P G+P V +
Sbjct: 215 PNGVPLVYEL 224
>pdb|4EMB|A Chain A, Crystal Structure Of A Phosphoglycerate Mutase Gpma From
Borrelia Burgdorferi B31
pdb|4EMB|B Chain B, Crystal Structure Of A Phosphoglycerate Mutase Gpma From
Borrelia Burgdorferi B31
pdb|4EMB|C Chain C, Crystal Structure Of A Phosphoglycerate Mutase Gpma From
Borrelia Burgdorferi B31
pdb|4EMB|D Chain D, Crystal Structure Of A Phosphoglycerate Mutase Gpma From
Borrelia Burgdorferi B31
Length = 274
Score = 181 bits (458), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 89/190 (46%), Positives = 126/190 (66%), Gaps = 24/190 (12%)
Query: 25 DVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLNERHYGGLTGLDKAATAAKYGEEQV 84
D+A +S+L+RA +TL IL+ +GQ + V K+WRLNERHYG L GL+K+ TAAKYGE++V
Sbjct: 77 DIAFSSLLSRANDTLNIILRELGQSYISVKKTWRLNERHYGALQGLNKSETAAKYGEDKV 136
Query: 85 LIWRRSFDIPPPAMEKDHTSGDCRNYEKLVMAKQNKKDHAYYSNIVDDPRYASEPSKEEF 144
LIWRRS+D+PP ++++ D R + + DPRY P K E
Sbjct: 137 LIWRRSYDVPPXSLDE----SDDR-------------------HPIKDPRYKHIP-KREL 172
Query: 145 PMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMSDEAIMGLNL 204
P E LK T+ R +PYW + I ++ EGKK+++AAHGNSLR +VK+ DN+S+E ++ LN+
Sbjct: 173 PSTECLKDTVARVIPYWTDEIAKEVLEGKKVIVAAHGNSLRALVKYFDNLSEEDVLKLNI 232
Query: 205 PTGIPFVTQC 214
PTGIP V +
Sbjct: 233 PTGIPLVYEL 242
>pdb|1XQ9|A Chain A, Structure Of Phosphoglycerate Mutase From Plasmodium
Falciparum At 2.6 Resolution
pdb|1XQ9|B Chain B, Structure Of Phosphoglycerate Mutase From Plasmodium
Falciparum At 2.6 Resolution
Length = 258
Score = 170 bits (431), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 88/189 (46%), Positives = 115/189 (60%), Gaps = 24/189 (12%)
Query: 25 DVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLNERHYGGLTGLDKAATAAKYGEEQV 84
DV +TSVL RA T +LK +PV K+WRLNERHYG L GL+K+ TA KYGEEQV
Sbjct: 61 DVVYTSVLKRAICTAWNVLKTADLLHVPVVKTWRLNERHYGSLQGLNKSETAKKYGEEQV 120
Query: 85 LIWRRSFDIPPPAMEKDHTSGDCRNYEKLVMAKQNKKDHAYYSNIVDDPRYASEPSKEEF 144
IWRRS+DIPPP ++K+ N Y N+ K+
Sbjct: 121 KIWRRSYDIPPPKLDKEDNRWPGHN--------------VVYKNV----------PKDAL 156
Query: 145 PMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMSDEAIMGLNL 204
P E LK T+ER LP+W + I P + KK+++AAHGNSLRG+VKHLDN+S+ ++ LN+
Sbjct: 157 PFTECLKDTVERVLPFWFDHIAPDILANKKVMVAAHGNSLRGLVKHLDNLSEADVLELNI 216
Query: 205 PTGIPFVTQ 213
PTG+P V +
Sbjct: 217 PTGVPLVYE 225
>pdb|3KKK|A Chain A, Y92c Catalytic Residue Mutant Of Phosphoglycerate Mutase
From Plasmodium Falciparum
pdb|3KKK|B Chain B, Y92c Catalytic Residue Mutant Of Phosphoglycerate Mutase
From Plasmodium Falciparum
pdb|3KKK|C Chain C, Y92c Catalytic Residue Mutant Of Phosphoglycerate Mutase
From Plasmodium Falciparum
pdb|3KKK|D Chain D, Y92c Catalytic Residue Mutant Of Phosphoglycerate Mutase
From Plasmodium Falciparum
Length = 258
Score = 167 bits (422), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 87/189 (46%), Positives = 114/189 (60%), Gaps = 24/189 (12%)
Query: 25 DVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLNERHYGGLTGLDKAATAAKYGEEQV 84
DV +TSVL RA T +LK +PV K+WRLNERH G L GL+K+ TA KYGEEQV
Sbjct: 61 DVVYTSVLKRAICTAWNVLKTADLLHVPVVKTWRLNERHCGSLQGLNKSETAKKYGEEQV 120
Query: 85 LIWRRSFDIPPPAMEKDHTSGDCRNYEKLVMAKQNKKDHAYYSNIVDDPRYASEPSKEEF 144
IWRRS+DIPPP ++K+ N Y N+ K+
Sbjct: 121 KIWRRSYDIPPPKLDKEDNRWPGHN--------------VVYKNV----------PKDAL 156
Query: 145 PMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMSDEAIMGLNL 204
P E LK T+ER LP+W + I P + KK+++AAHGNSLRG+VKHLDN+S+ ++ LN+
Sbjct: 157 PFTECLKDTVERVLPFWFDHIAPDILANKKVMVAAHGNSLRGLVKHLDNLSEADVLELNI 216
Query: 205 PTGIPFVTQ 213
PTG+P V +
Sbjct: 217 PTGVPLVYE 225
>pdb|2HHJ|A Chain A, Human Bisphosphoglycerate Mutase Complexed With 2,3-
Bisphosphoglycerate (15 Days)
pdb|2HHJ|B Chain B, Human Bisphosphoglycerate Mutase Complexed With 2,3-
Bisphosphoglycerate (15 Days)
Length = 267
Score = 166 bits (421), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 84/190 (44%), Positives = 116/190 (61%), Gaps = 22/190 (11%)
Query: 25 DVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLNERHYGGLTGLDKAATAAKYGEEQV 84
D+ TSVL R+ +T IL+ +GQE +PV SWRLNERHYG L GL++ A +GEEQV
Sbjct: 53 DLVFTSVLNRSIHTAWLILEELGQEWVPVESSWRLNERHYGALIGLNREQMALNHGEEQV 112
Query: 85 LIWRRSFDIPPPAMEKDHTSGDCRNYEKLVMAKQNKKDHAYYSNIVDDPRY-ASEPSKEE 143
+WRRS+++ PP +E + H YY I +D RY + ++
Sbjct: 113 RLWRRSYNVTPPPIE---------------------ESHPYYQEIYNDRRYKVCDVPLDQ 151
Query: 144 FPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMSDEAIMGLN 203
P ESLK +ER LPYWN I P++ GK ILI+AHGNS R ++KHL+ +SDE I+ +
Sbjct: 152 LPRSESLKDVLERLLPYWNERIAPEVLRGKTILISAHGNSSRALLKHLEGISDEDIINIT 211
Query: 204 LPTGIPFVTQ 213
LPTG+P + +
Sbjct: 212 LPTGVPILLE 221
>pdb|1T8P|A Chain A, Crystal Structure Of Human Erythrocyte 2,3-
Bisphosphoglycerate Mutase
pdb|1T8P|B Chain B, Crystal Structure Of Human Erythrocyte 2,3-
Bisphosphoglycerate Mutase
pdb|2A9J|A Chain A, Human Bisphosphoglycerate Mutase Complexed With 3-
Phosphoglycerate (17 Days)
pdb|2A9J|B Chain B, Human Bisphosphoglycerate Mutase Complexed With 3-
Phosphoglycerate (17 Days)
pdb|2F90|A Chain A, Crystal Structure Of Bisphosphoglycerate Mutase In Complex
With 3-Phosphoglycerate And Alf4-
pdb|2F90|B Chain B, Crystal Structure Of Bisphosphoglycerate Mutase In Complex
With 3-Phosphoglycerate And Alf4-
pdb|2H4X|A Chain A, Human Bisphosphoglycerate Mutase Complex With 3-
Phosphoglycerate With Crystal Growth 90 Days
pdb|2H4X|B Chain B, Human Bisphosphoglycerate Mutase Complex With 3-
Phosphoglycerate With Crystal Growth 90 Days
pdb|2H4Z|A Chain A, Human Bisphosphoglycerate Mutase Complexed With 2,3-
Bisphosphoglycerate
pdb|2H4Z|B Chain B, Human Bisphosphoglycerate Mutase Complexed With 2,3-
Bisphosphoglycerate
pdb|2H52|A Chain A, Crystal Structure Of Human Bisphosphoglycerate Mutase
Complex With 3-Phosphoglycerate (18 Days)
pdb|2H52|B Chain B, Crystal Structure Of Human Bisphosphoglycerate Mutase
Complex With 3-Phosphoglycerate (18 Days)
pdb|3NFY|A Chain A, The Structure Of Human Bisphosphoglycerate Mutase To 1.94a
pdb|3NFY|B Chain B, The Structure Of Human Bisphosphoglycerate Mutase To 1.94a
Length = 267
Score = 166 bits (421), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 84/190 (44%), Positives = 116/190 (61%), Gaps = 22/190 (11%)
Query: 25 DVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLNERHYGGLTGLDKAATAAKYGEEQV 84
D+ TSVL R+ +T IL+ +GQE +PV SWRLNERHYG L GL++ A +GEEQV
Sbjct: 53 DLVFTSVLNRSIHTAWLILEELGQEWVPVESSWRLNERHYGALIGLNREQMALNHGEEQV 112
Query: 85 LIWRRSFDIPPPAMEKDHTSGDCRNYEKLVMAKQNKKDHAYYSNIVDDPRY-ASEPSKEE 143
+WRRS+++ PP +E + H YY I +D RY + ++
Sbjct: 113 RLWRRSYNVTPPPIE---------------------ESHPYYQEIYNDRRYKVCDVPLDQ 151
Query: 144 FPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMSDEAIMGLN 203
P ESLK +ER LPYWN I P++ GK ILI+AHGNS R ++KHL+ +SDE I+ +
Sbjct: 152 LPRSESLKDVLERLLPYWNERIAPEVLRGKTILISAHGNSSRALLKHLEGISDEDIINIT 211
Query: 204 LPTGIPFVTQ 213
LPTG+P + +
Sbjct: 212 LPTGVPILLE 221
>pdb|1RII|A Chain A, Crystal Structure Of Phosphoglycerate Mutase From M.
Tuberculosis
pdb|1RII|B Chain B, Crystal Structure Of Phosphoglycerate Mutase From M.
Tuberculosis
pdb|1RII|C Chain C, Crystal Structure Of Phosphoglycerate Mutase From M.
Tuberculosis
pdb|1RII|D Chain D, Crystal Structure Of Phosphoglycerate Mutase From M.
Tuberculosis
Length = 265
Score = 164 bits (415), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 89/186 (47%), Positives = 110/186 (59%), Gaps = 26/186 (13%)
Query: 25 DVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLNERHYGGLTGLDKAATAAKYGEEQV 84
DV +TS+L RA T L + +PV +SWRLNERHYG L GLDKA T A+YGEEQ
Sbjct: 54 DVLYTSLLRRAITTAHLALDSADRLWIPVRRSWRLNERHYGALQGLDKAETKARYGEEQF 113
Query: 85 LIWRRSFDIPPPAMEKDHTSGDCRNYEKLVMAKQNKKDHAYYSNIVDDPRYASEPSKEEF 144
+ WRRS+D PPP +E+ Q +D DPRYA
Sbjct: 114 MAWRRSYDTPPPPIER---------------GSQFSQDA--------DPRYADIGGG--- 147
Query: 145 PMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMSDEAIMGLNL 204
P+ E L + R LPY+ +VIV L+ GK +LI AHGNSLR +VKHLD MSD+ I+GLN+
Sbjct: 148 PLTECLADVVARFLPYFTDVIVGDLRVGKTVLIVAHGNSLRALVKHLDQMSDDEIVGLNI 207
Query: 205 PTGIPF 210
PTGIP
Sbjct: 208 PTGIPL 213
>pdb|4EO9|A Chain A, Crystal Structure Of A Phosphoglycerate Mutase Gpm1 From
Mycobacterium Leprae
Length = 268
Score = 161 bits (407), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 86/186 (46%), Positives = 109/186 (58%), Gaps = 26/186 (13%)
Query: 25 DVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLNERHYGGLTGLDKAATAAKYGEEQV 84
DV +TS+L RA T L +PV +SWRLNERHYG L GLDKA T A+YGEE+
Sbjct: 77 DVLYTSLLRRAITTAHLALDTADWLWIPVRRSWRLNERHYGALQGLDKAVTKARYGEERF 136
Query: 85 LIWRRSFDIPPPAMEKDHTSGDCRNYEKLVMAKQNKKDHAYYSNIVDDPRYASEPSKEEF 144
+ WRRS+D PPP +EK + +D DPRY
Sbjct: 137 MAWRRSYDTPPPPIEK---------------GSEFSQDA--------DPRYTDIGGG--- 170
Query: 145 PMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMSDEAIMGLNL 204
P+ E L + R LPY+ +VIVP L+ G+ +LI AHGNSLR +VKHLD MSD+ ++GLN+
Sbjct: 171 PLTECLADVVTRFLPYFTDVIVPDLRTGRTVLIVAHGNSLRALVKHLDEMSDDEVVGLNV 230
Query: 205 PTGIPF 210
PTGIP
Sbjct: 231 PTGIPL 236
>pdb|3D8H|A Chain A, Crystal Structure Of Phosphoglycerate Mutase From
Cryptosporidium Parvum, Cgd7_4270
pdb|3D8H|B Chain B, Crystal Structure Of Phosphoglycerate Mutase From
Cryptosporidium Parvum, Cgd7_4270
Length = 267
Score = 150 bits (380), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 81/197 (41%), Positives = 109/197 (55%), Gaps = 40/197 (20%)
Query: 25 DVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLNERHYGGLTGLDKAATAAKYGEEQV 84
DV +TSVL RA T +LK +G + P+ WRLNERHYG L GL+K+ TA+K+GE+QV
Sbjct: 70 DVVYTSVLKRAIMTTWTVLKELGNINCPIINHWRLNERHYGALQGLNKSETASKFGEDQV 129
Query: 85 LIWRRSFDIPPPAMEKDHTSGDCRNYEKLVMAKQNKKDHAYYSNIVDDPRYASE------ 138
IWRRSFD+PPP +EK DPR+
Sbjct: 130 KIWRRSFDVPPPVLEK------------------------------SDPRWPGNELIYKG 159
Query: 139 --PSKEEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMSD 196
PS P E LK T+ER PY+ +VI P + GK +L++AHGNSLR ++ L+ M+
Sbjct: 160 ICPSC--LPTTECLKDTVERVKPYFEDVIAPSIMSGKSVLVSAHGNSLRALLYLLEGMTP 217
Query: 197 EAIMGLNLPTGIPFVTQ 213
E I+ +N+PT P V +
Sbjct: 218 EQILEVNIPTACPLVLE 234
>pdb|1QHF|A Chain A, Yeast Phosphoglycerate Mutase-3pg Complex Structure To 1.7
A
pdb|1QHF|B Chain B, Yeast Phosphoglycerate Mutase-3pg Complex Structure To 1.7
A
Length = 240
Score = 150 bits (379), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 83/190 (43%), Positives = 110/190 (57%), Gaps = 24/190 (12%)
Query: 25 DVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLNERHYGGLTGLDKAATAAKYGEEQV 84
DV +TS L+RA T L+ + +PV++SWRLNERHYG L G DKA T K+GEE+
Sbjct: 50 DVLYTSKLSRAIQTANIALEKADRLWIPVNRSWRLNERHYGDLQGKDKAETLKKFGEEKF 109
Query: 85 LIWRRSFDIPPPAMEKDHTSGDCRNYEKLVMAKQNKKDHAYYSNIVDDPRYASEPSKEEF 144
+RRSFD+PPP ++ +++ + + Y DP
Sbjct: 110 NTYRRSFDVPPPPIDASSP-----------FSQKGDERYKYV-----DPNV--------L 145
Query: 145 PMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMSDEAIMGLNL 204
P ESL L I+R LPYW +VI L GK ++IAAHGNSLRG+VKHL+ +SD I LN+
Sbjct: 146 PETESLALVIDRLLPYWQDVIAKDLLSGKTVMIAAHGNSLRGLVKHLEGISDADIAKLNI 205
Query: 205 PTGIPFVTQC 214
PTGIP V +
Sbjct: 206 PTGIPLVFEL 215
>pdb|4PGM|A Chain A, Saccharomyces Cerevisiae Phosphoglycerate Mutase
pdb|4PGM|B Chain B, Saccharomyces Cerevisiae Phosphoglycerate Mutase
pdb|4PGM|C Chain C, Saccharomyces Cerevisiae Phosphoglycerate Mutase
pdb|4PGM|D Chain D, Saccharomyces Cerevisiae Phosphoglycerate Mutase
pdb|1BQ3|D Chain D, Saccharomyces Cerevisiae Phosphoglycerate Mutase In
Complex With Inositol Hexakisphosphate
pdb|1BQ3|C Chain C, Saccharomyces Cerevisiae Phosphoglycerate Mutase In
Complex With Inositol Hexakisphosphate
pdb|1BQ3|A Chain A, Saccharomyces Cerevisiae Phosphoglycerate Mutase In
Complex With Inositol Hexakisphosphate
pdb|1BQ3|B Chain B, Saccharomyces Cerevisiae Phosphoglycerate Mutase In
Complex With Inositol Hexakisphosphate
pdb|1BQ4|D Chain D, Saccharomyces Cerevisiae Phosphoglycerate Mutase In
Complex With Benzene Hexacarboxylate
pdb|1BQ4|C Chain C, Saccharomyces Cerevisiae Phosphoglycerate Mutase In
Complex With Benzene Hexacarboxylate
pdb|1BQ4|A Chain A, Saccharomyces Cerevisiae Phosphoglycerate Mutase In
Complex With Benzene Hexacarboxylate
pdb|1BQ4|B Chain B, Saccharomyces Cerevisiae Phosphoglycerate Mutase In
Complex With Benzene Hexacarboxylate
pdb|5PGM|D Chain D, Saccharomyces Cerevisiae Phosphoglycerate Mutase
pdb|5PGM|C Chain C, Saccharomyces Cerevisiae Phosphoglycerate Mutase
pdb|5PGM|A Chain A, Saccharomyces Cerevisiae Phosphoglycerate Mutase
pdb|5PGM|B Chain B, Saccharomyces Cerevisiae Phosphoglycerate Mutase
pdb|5PGM|F Chain F, Saccharomyces Cerevisiae Phosphoglycerate Mutase
pdb|5PGM|G Chain G, Saccharomyces Cerevisiae Phosphoglycerate Mutase
pdb|5PGM|H Chain H, Saccharomyces Cerevisiae Phosphoglycerate Mutase
pdb|5PGM|E Chain E, Saccharomyces Cerevisiae Phosphoglycerate Mutase
Length = 246
Score = 150 bits (379), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 83/190 (43%), Positives = 110/190 (57%), Gaps = 24/190 (12%)
Query: 25 DVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLNERHYGGLTGLDKAATAAKYGEEQV 84
DV +TS L+RA T L+ + +PV++SWRLNERHYG L G DKA T K+GEE+
Sbjct: 50 DVLYTSKLSRAIQTANIALEKADRLWIPVNRSWRLNERHYGDLQGKDKAETLKKFGEEKF 109
Query: 85 LIWRRSFDIPPPAMEKDHTSGDCRNYEKLVMAKQNKKDHAYYSNIVDDPRYASEPSKEEF 144
+RRSFD+PPP ++ +++ + + Y DP
Sbjct: 110 NTYRRSFDVPPPPIDASSP-----------FSQKGDERYKYV-----DPNV--------L 145
Query: 145 PMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMSDEAIMGLNL 204
P ESL L I+R LPYW +VI L GK ++IAAHGNSLRG+VKHL+ +SD I LN+
Sbjct: 146 PETESLALVIDRLLPYWQDVIAKDLLSGKTVMIAAHGNSLRGLVKHLEGISDADIAKLNI 205
Query: 205 PTGIPFVTQC 214
PTGIP V +
Sbjct: 206 PTGIPLVFEL 215
>pdb|3PGM|A Chain A, The Structure Of Yeast Phosphoglycerate Mutase At 0.28 Nm
Resolution
pdb|3PGM|B Chain B, The Structure Of Yeast Phosphoglycerate Mutase At 0.28 Nm
Resolution
Length = 244
Score = 132 bits (331), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 78/189 (41%), Positives = 105/189 (55%), Gaps = 26/189 (13%)
Query: 26 VAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLNERHYGGLTGLDKAATAAKYGEEQVL 85
V +TS L+RA T L+ + +PV++SWRLNERHYG L G DKA T K+GEE+
Sbjct: 51 VDYTSKLSRAIQTANIALEKADRLWIPVNRSWRLNERHYGDLQGKDKAQTLKKFGEEKFN 110
Query: 86 IWRRSFDIPPPAMEKDHTSGDCRNYEKLVMAKQNKKDHAYYSNIVDDPRYASEPSKEEFP 145
+RRSFD+PPP ++ +++ + + Y DP P
Sbjct: 111 TYRRSFDVPPPPIDASSP-----------FSQKGDERYKYV-----DPNV--------LP 146
Query: 146 MFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMSDEAIMGLNLP 205
ESL L I+R LPYW +VI + GK +IAAHGNSLRG+VKHL+ +SD I LN+P
Sbjct: 147 ETESLALVIDRLLPYWQDVIAKLV--GKTSMIAAHGNSLRGLVKHLEGISDADIAKLNIP 204
Query: 206 TGIPFVTQC 214
G V +
Sbjct: 205 PGTILVFEL 213
>pdb|1FZT|A Chain A, Solution Structure And Dynamics Of An Open B-Sheet,
Glycolytic Enzyme-Monomeric 23.7 Kda Phosphoglycerate
Mutase From Schizosaccharomyces Pombe
Length = 211
Score = 121 bits (304), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 71/187 (37%), Positives = 96/187 (51%), Gaps = 49/187 (26%)
Query: 25 DVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLNERHYGGLTGLDKAATAAKYGEEQV 84
D+A TS L RAQ T + IL+ +G+ +L KS +LNER+YG L GL+K K+G EQV
Sbjct: 57 DIAFTSALQRAQKTCQIILEEVGEPNLETIKSEKLNERYYGDLQGLNKDDARKKWGAEQV 116
Query: 85 LIWRRSFDIPPPAMEKDHTSGDCRNYEKLVMAKQNKKDHAYYSNIVDDPRYASEPSKEEF 144
IWRRS+DI PP
Sbjct: 117 QIWRRSYDIAPPN----------------------------------------------- 129
Query: 145 PMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMSDEAIMGLNL 204
ESLK T ER LPY+ + IVP + +G+K+LIAAHGNSLR ++ L+ ++ + I+ L
Sbjct: 130 --GESLKDTAERVLPYYKSTIVPHILKGEKVLIAAHGNSLRALIMDLEGLTGDQIVKREL 187
Query: 205 PTGIPFV 211
TG+P V
Sbjct: 188 ATGVPIV 194
>pdb|2IKQ|A Chain A, Crystal Structure Of Mouse Sts-1 Pgm Domain In Complex
With Phosphate
pdb|2IKQ|B Chain B, Crystal Structure Of Mouse Sts-1 Pgm Domain In Complex
With Phosphate
pdb|2IKQ|M Chain M, Crystal Structure Of Mouse Sts-1 Pgm Domain In Complex
With Phosphate
Length = 270
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 1/90 (1%)
Query: 127 SNIVDDPRYASEPSKEEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRG 186
+N+ D Y + + ES I R+ +I +G ILI AH +SL
Sbjct: 144 ANLSVDTTYRPHIPVSKLAISESYDTYINRSFQVTKEIISECKSKGNNILIVAHASSLEA 203
Query: 187 IVKHLDNMSDEAIMG-LNLPTGIPFVTQCS 215
L +S + + + IP++ CS
Sbjct: 204 CTCQLQGLSPQNSKDFVQMVRKIPYLGFCS 233
>pdb|2H0Q|A Chain A, Crystal Structure Of The Pgm Domain Of The Suppressor Of
T-Cell Receptor (Sts-1)
pdb|2H0Q|B Chain B, Crystal Structure Of The Pgm Domain Of The Suppressor Of
T-Cell Receptor (Sts-1)
pdb|2H0Q|C Chain C, Crystal Structure Of The Pgm Domain Of The Suppressor Of
T-Cell Receptor (Sts-1)
Length = 261
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 1/90 (1%)
Query: 127 SNIVDDPRYASEPSKEEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRG 186
+N+ D Y + + ES I R+ +I +G ILI AH +SL
Sbjct: 140 ANLSVDTTYRPHIPVSKLAISESYDTYINRSFQVTKEIISECKSKGNNILIVAHASSLEA 199
Query: 187 IVKHLDNMSDEAIMG-LNLPTGIPFVTQCS 215
L +S + + + IP++ CS
Sbjct: 200 CTCQLQGLSPQNSKDFVQMVRKIPYLGFCS 229
>pdb|3MBK|A Chain A, The 1.35 A Structure Of The Phosphatase Domain Of The
Suppressor Of T Cell Receptor Signalling Protein In
Complex With Sulphate
pdb|3MBK|B Chain B, The 1.35 A Structure Of The Phosphatase Domain Of The
Suppressor Of T Cell Receptor Signalling Protein In
Complex With Sulphate
Length = 264
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 1/90 (1%)
Query: 127 SNIVDDPRYASEPSKEEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRG 186
+N+ D Y + + ES I R+ +I +G ILI AH +SL
Sbjct: 140 ANLSVDTTYRPHIPVSKLAISESYDTYINRSFQVTKEIISECKSKGNNILIVAHASSLEA 199
Query: 187 IVKHLDNMSDEAIMG-LNLPTGIPFVTQCS 215
L +S + + + IP++ CS
Sbjct: 200 CTCQLQGLSPQNSKDFVQMVRKIPYLGFCS 229
>pdb|3TFF|A Chain A, Crystal Structure Of An H-Nox Protein From Nostoc Sp. Pcc
7120, L67w Mutant
pdb|3TFF|B Chain B, Crystal Structure Of An H-Nox Protein From Nostoc Sp. Pcc
7120, L67w Mutant
Length = 189
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 160 YWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMSDEAIMGLNLPTGIPFVTQC 214
YW + +EG L+A+ G+SL +++LDN+ A +GL+ P P +C
Sbjct: 73 YW---VTYTSEEGYGELLASAGDSLPEFMENLDNL--HARVGLSFPQLRPPAFEC 122
>pdb|3TFD|A Chain A, Crystal Structure Of An H-Nox Protein From Nostoc Sp. Pcc
7120, L66w Mutant
pdb|3TFD|B Chain B, Crystal Structure Of An H-Nox Protein From Nostoc Sp. Pcc
7120, L66w Mutant
pdb|3TFE|A Chain A, Crystal Structure Of An H-Nox Protein From Nostoc Sp. Pcc
7120, L66w Mutant Under 6 Atm Of Xenon
pdb|3TFE|B Chain B, Crystal Structure Of An H-Nox Protein From Nostoc Sp. Pcc
7120, L66w Mutant Under 6 Atm Of Xenon
Length = 189
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 160 YWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMSDEAIMGLNLPTGIPFVTQC 214
YW + +EG L+A+ G+SL +++LDN+ A +GL+ P P +C
Sbjct: 73 YW---VTYTSEEGYGELLASAGDSLPEFMENLDNL--HARVGLSFPQLRPPAFEC 122
>pdb|3TFG|A Chain A, Crystal Structure Of An H-Nox Protein From Nostoc Sp. Pcc
7120, L66wL67W DOUBLE MUTANT
pdb|3TFG|B Chain B, Crystal Structure Of An H-Nox Protein From Nostoc Sp. Pcc
7120, L66wL67W DOUBLE MUTANT
Length = 189
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 160 YWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMSDEAIMGLNLPTGIPFVTQC 214
YW + +EG L+A+ G+SL +++LDN+ A +GL+ P P +C
Sbjct: 73 YW---VTYTSEEGYGELLASAGDSLPEFMENLDNL--HARVGLSFPQLRPPAFEC 122
>pdb|2O09|A Chain A, Crystal Structure Of The H-Nox Domain From Nostoc Sp. Pcc
7120
pdb|2O09|B Chain B, Crystal Structure Of The H-Nox Domain From Nostoc Sp. Pcc
7120
pdb|2O0C|A Chain A, Crystal Structure Of The H-Nox Domain From Nostoc Sp. Pcc
7120 Complexed To No
pdb|2O0C|B Chain B, Crystal Structure Of The H-Nox Domain From Nostoc Sp. Pcc
7120 Complexed To No
pdb|2O0G|A Chain A, Crystal Structure Of The H-Nox Domain From Nostoc Sp. Pcc
7120 Complexed To Co
pdb|2O0G|B Chain B, Crystal Structure Of The H-Nox Domain From Nostoc Sp. Pcc
7120 Complexed To Co
pdb|3L6J|A Chain A, Structure Of Cinaciguat (Bay 58-2667) Bound To Nostoc
H-Nox Domain
pdb|3L6J|B Chain B, Structure Of Cinaciguat (Bay 58-2667) Bound To Nostoc
H-Nox Domain
pdb|3TF8|A Chain A, Crystal Structure Of An H-Nox Protein From Nostoc Sp. Pcc
7120
pdb|3TF8|B Chain B, Crystal Structure Of An H-Nox Protein From Nostoc Sp. Pcc
7120
pdb|3TF9|A Chain A, Crystal Structure Of An H-Nox Protein From Nostoc Sp. Pcc
7120 Under 1 Atm Of Xenon
pdb|3TF9|B Chain B, Crystal Structure Of An H-Nox Protein From Nostoc Sp. Pcc
7120 Under 1 Atm Of Xenon
pdb|3TFA|A Chain A, Crystal Structure Of An H-Nox Protein From Nostoc Sp. Pcc
7120 Under 6 Atm Of Xenon
pdb|3TFA|B Chain B, Crystal Structure Of An H-Nox Protein From Nostoc Sp. Pcc
7120 Under 6 Atm Of Xenon
Length = 189
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 160 YWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMSDEAIMGLNLPTGIPFVTQC 214
YW + +EG L+A+ G+SL +++LDN+ A +GL+ P P +C
Sbjct: 73 YW---VTYTSEEGYGELLASAGDSLPEFMENLDNL--HARVGLSFPQLRPPAFEC 122
>pdb|1SMA|A Chain A, Crystal Structure Of A Maltogenic Amylase
pdb|1SMA|B Chain B, Crystal Structure Of A Maltogenic Amylase
Length = 588
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 181 GNSLRGIVKHLDNMSDEAIMGLNL 204
G L+GI+ HLD ++D I G+ L
Sbjct: 172 GGDLQGIIDHLDYLADLGITGIYL 195
>pdb|1GVI|A Chain A, Thermus Maltogenic Amylase In Complex With Beta-Cd
pdb|1GVI|B Chain B, Thermus Maltogenic Amylase In Complex With Beta-Cd
Length = 588
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 181 GNSLRGIVKHLDNMSDEAIMGLNL 204
G L+GI+ HLD ++D I G+ L
Sbjct: 172 GGDLQGIIDHLDYLADLGITGIYL 195
>pdb|2NTB|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide V
pdb|2NTB|B Chain B, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide V
pdb|2NTP|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide Vi
pdb|2NTP|B Chain B, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide Vi
pdb|2NTQ|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide Vii
pdb|2NTQ|B Chain B, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide Vii
Length = 342
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 25/64 (39%)
Query: 66 GLTGLDKAATAAKYGEEQVLIWRRSFDIPPPAMEKDHTSGDCRNYEKLVMAKQNKKDHAY 125
G G +AK Q L R FD P + D S ++ + + + D AY
Sbjct: 84 GTAGSSTITISAKDFSAQSLTIRNDFDFPANQAKSDSDSSKIKDTQAVALYVTKSGDRAY 143
Query: 126 YSNI 129
+ ++
Sbjct: 144 FKDV 147
>pdb|2NSP|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide I
pdb|2NSP|B Chain B, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide I
pdb|2NST|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Ii
pdb|2NST|B Chain B, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Ii
pdb|2NT6|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Iii
pdb|2NT6|B Chain B, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Iii
pdb|2NT9|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Iv
pdb|2NT9|B Chain B, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Iv
Length = 342
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 25/64 (39%)
Query: 66 GLTGLDKAATAAKYGEEQVLIWRRSFDIPPPAMEKDHTSGDCRNYEKLVMAKQNKKDHAY 125
G G +AK Q L R FD P + D S ++ + + + D AY
Sbjct: 84 GTAGSSTITISAKDFSAQSLTIRNDFDFPANQAKSDSDSSKIKDTQAVALYVTKSGDRAY 143
Query: 126 YSNI 129
+ ++
Sbjct: 144 FKDV 147
>pdb|1QJV|A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi
pdb|1QJV|B Chain B, Pectin Methylesterase Pema From Erwinia Chrysanthemi
Length = 342
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 25/64 (39%)
Query: 66 GLTGLDKAATAAKYGEEQVLIWRRSFDIPPPAMEKDHTSGDCRNYEKLVMAKQNKKDHAY 125
G G +AK Q L R FD P + D S ++ + + + D AY
Sbjct: 84 GTAGSSTITISAKDFSAQSLTIRNDFDFPANQAKSDSDSSKIKDTQAVALYVTKSGDRAY 143
Query: 126 YSNI 129
+ ++
Sbjct: 144 FKDV 147
>pdb|3AUK|A Chain A, Crystal Structure Of A Lipase From Geobacillus Sp. Sbs-4s
Length = 389
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 165 IVPQLKEGKKILIAAH---GNSLRGIVKHLDNMSDE 197
++P+LK G +I I AH G + R +V L+N S E
Sbjct: 98 LLPELKRGGRIHIIAHSQGGQTARMLVSLLENGSQE 133
>pdb|3UMJ|A Chain A, Crystal Structure Of D311e Lipase
pdb|3UMJ|B Chain B, Crystal Structure Of D311e Lipase
Length = 387
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 165 IVPQLKEGKKILIAAH---GNSLRGIVKHLDNMSDE 197
++P+LK G +I I AH G + R +V L+N S E
Sbjct: 96 LLPELKRGGRIHIIAHSQGGQTARMLVSLLENGSQE 131
>pdb|2DSN|A Chain A, Crystal Structure Of T1 Lipase
pdb|2DSN|B Chain B, Crystal Structure Of T1 Lipase
Length = 387
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 165 IVPQLKEGKKILIAAH---GNSLRGIVKHLDNMSDE 197
++P+LK G +I I AH G + R +V L+N S E
Sbjct: 96 LLPELKRGGRIHIIAHSQGGQTARMLVSLLENGSQE 131
>pdb|2Z5G|A Chain A, Crystal Structure Of T1 Lipase F16l Mutant
pdb|2Z5G|B Chain B, Crystal Structure Of T1 Lipase F16l Mutant
Length = 387
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 165 IVPQLKEGKKILIAAH---GNSLRGIVKHLDNMSDE 197
++P+LK G +I I AH G + R +V L+N S E
Sbjct: 96 LLPELKRGGRIHIIAHSQGGQTARMLVSLLENGSQE 131
>pdb|1JI3|A Chain A, Crystal Structure Of The First Thermostable Bacterial
Lipase From Bacillus Stearothermophilus
pdb|1JI3|B Chain B, Crystal Structure Of The First Thermostable Bacterial
Lipase From Bacillus Stearothermophilus
Length = 388
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 165 IVPQLKEGKKILIAAH---GNSLRGIVKHLDNMSDE 197
++P+LK G +I I AH G + R +V L+N S E
Sbjct: 97 LLPELKRGGRIHIIAHSQGGQTARMLVSLLENGSQE 132
>pdb|2CW8|A Chain A, Crystal Structure Of Intein Homing Endonuclease Ii
Length = 537
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 97 AMEKDHTSGDCRNY--EKLVMAKQNKKDHAYYSNIV 130
A++ H SG R Y E+L K +KK +AYYS+++
Sbjct: 416 AVKLGHDSGVYRVYINEELPFVKLDKKKNAYYSHVI 451
>pdb|2CW7|A Chain A, Crystal Structure Of Intein Homing Endonuclease Ii
Length = 537
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 97 AMEKDHTSGDCRNY--EKLVMAKQNKKDHAYYSNIV 130
A++ H SG R Y E+L K +KK +AYYS+++
Sbjct: 416 AVKLGHDSGVYRVYINEELPFVKLDKKKNAYYSHVI 451
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,067,553
Number of Sequences: 62578
Number of extensions: 238194
Number of successful extensions: 564
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 511
Number of HSP's gapped (non-prelim): 48
length of query: 215
length of database: 14,973,337
effective HSP length: 95
effective length of query: 120
effective length of database: 9,028,427
effective search space: 1083411240
effective search space used: 1083411240
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)