RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11845
(215 letters)
>gnl|CDD|184516 PRK14115, gpmA, phosphoglyceromutase; Provisional.
Length = 247
Score = 301 bits (773), Expect = e-104
Identities = 119/205 (58%), Positives = 141/205 (68%), Gaps = 24/205 (11%)
Query: 7 VNEAEAAGVALAKAGFKFDVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLNERHYGG 66
V+EA+AAG L + G+ FDVA+TSVL RA TL +L + Q LPV KSWRLNERHYG
Sbjct: 32 VSEAKAAGKLLKEEGYTFDVAYTSVLKRAIRTLWIVLDELDQMWLPVEKSWRLNERHYGA 91
Query: 67 LTGLDKAATAAKYGEEQVLIWRRSFDIPPPAMEKDHTSGDCRNYEKLVMAKQNKKDHAYY 126
L GL+KA TAAKYG+EQV IWRRS+D+PPPA+EKD D R
Sbjct: 92 LQGLNKAETAAKYGDEQVKIWRRSYDVPPPALEKD----DER------------------ 129
Query: 127 SNIVDDPRYASEPSKEEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRG 186
DPRYA P +EE P+ ESLK TI R LPYWN I PQLK GK++LIAAHGNSLR
Sbjct: 130 -YPGHDPRYAKLP-EEELPLTESLKDTIARVLPYWNETIAPQLKSGKRVLIAAHGNSLRA 187
Query: 187 IVKHLDNMSDEAIMGLNLPTGIPFV 211
+VK+LDN+SDE I+ LN+PTG+P V
Sbjct: 188 LVKYLDNISDEEILELNIPTGVPLV 212
>gnl|CDD|213596 TIGR01258, pgm_1, phosphoglycerate mutase, BPG-dependent, family 1.
Most members of this family are phosphoglycerate mutase
(EC 5.4.2.1). This enzyme interconverts
2-phosphoglycerate and 3-phosphoglycerate. The enzyme is
transiently phosphorylated on an active site histidine
by 2,3-diphosphoglyerate, which is both substrate and
product. Some members of this family have are
phosphoglycerate mutase as a minor activity and act
primarily as a bisphoglycerate mutase, interconverting
2,3-diphosphoglycerate and 1,3-diphosphoglycerate (EC
5.4.2.4). This model is designated as a subfamily for
this reason. The second and third paralogs in S.
cerevisiae are somewhat divergent and apparently
inactive (see PUBMED:9544241) but are also part of this
subfamily phylogenetically.
Length = 245
Score = 270 bits (692), Expect = 2e-92
Identities = 106/205 (51%), Positives = 130/205 (63%), Gaps = 24/205 (11%)
Query: 7 VNEAEAAGVALAKAGFKFDVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLNERHYGG 66
EA+ AG L + G++FDVA+TS+L RA +TL L + Q +PV KSWRLNERHYG
Sbjct: 32 QQEAKRAGELLKEEGYEFDVAYTSLLKRAIHTLNIALDELDQLWIPVKKSWRLNERHYGA 91
Query: 67 LTGLDKAATAAKYGEEQVLIWRRSFDIPPPAMEKDHTSGDCRNYEKLVMAKQNKKDHAYY 126
L GL+KA TAAKYGEEQV IWRRSFD+PPP +++ +
Sbjct: 92 LQGLNKAETAAKYGEEQVNIWRRSFDVPPPPIDESD---------------PRSPHN--- 133
Query: 127 SNIVDDPRYASEPSKEEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRG 186
DPRYA K P+ ESLK TI R LPYWN+ I P L GK++LI AHGNSLR
Sbjct: 134 -----DPRYAHLDPK-VLPLTESLKDTIARVLPYWNDEIAPDLLSGKRVLIVAHGNSLRA 187
Query: 187 IVKHLDNMSDEAIMGLNLPTGIPFV 211
+VKHL+ +SDE I+ LN+PTGIP V
Sbjct: 188 LVKHLEGISDEEILELNIPTGIPLV 212
>gnl|CDD|223661 COG0588, GpmA, Phosphoglycerate mutase 1 [Carbohydrate transport
and metabolism].
Length = 230
Score = 264 bits (678), Expect = 2e-90
Identities = 109/205 (53%), Positives = 135/205 (65%), Gaps = 24/205 (11%)
Query: 7 VNEAEAAGVALAKAGFKFDVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLNERHYGG 66
++EA+AAG L + G +FD+A+TSVL RA TL +L+ Q +PV KSWRLNERHYG
Sbjct: 33 ISEAKAAGKLLKEEGLEFDIAYTSVLKRAIKTLNIVLEESDQLWIPVIKSWRLNERHYGA 92
Query: 67 LTGLDKAATAAKYGEEQVLIWRRSFDIPPPAMEKDHTSGDCRNYEKLVMAKQNKKDHAYY 126
L GL+KA TAAKYGEEQVLIWRRS+DIPPP +EKD D R+ +
Sbjct: 93 LQGLNKAETAAKYGEEQVLIWRRSYDIPPPKLEKD----DERSPHR-------------- 134
Query: 127 SNIVDDPRYASEPSKEEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRG 186
D RYA P+ ESLK T+ER LPYW + I P LK GK +LI AHGNSLR
Sbjct: 135 -----DRRYAHLD-IGGLPLTESLKDTVERVLPYWEDDIAPNLKSGKNVLIVAHGNSLRA 188
Query: 187 IVKHLDNMSDEAIMGLNLPTGIPFV 211
++K+L+ +SDE I+ LN+PTGIP V
Sbjct: 189 LIKYLEGISDEDILDLNIPTGIPLV 213
>gnl|CDD|240280 PTZ00123, PTZ00123, phosphoglycerate mutase like-protein;
Provisional.
Length = 236
Score = 263 bits (673), Expect = 1e-89
Identities = 106/207 (51%), Positives = 131/207 (63%), Gaps = 24/207 (11%)
Query: 7 VNEAEAAGVALAKAGFKFDVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLNERHYGG 66
V EA AG L + GF+FDV +TSVL RA T +L+ +GQ +PV KSWRLNERHYG
Sbjct: 20 VQEAREAGKLLKEKGFRFDVVYTSVLKRAIKTAWIVLEELGQLHVPVIKSWRLNERHYGA 79
Query: 67 LTGLDKAATAAKYGEEQVLIWRRSFDIPPPAMEKDHTSGDCRNYEKLVMAKQNKKDHAYY 126
L GL+K+ TA K+GEEQV IWRRS+DIPPP +EK D Y
Sbjct: 80 LQGLNKSETAEKHGEEQVKIWRRSYDIPPPPLEKS--------------------DERYP 119
Query: 127 SNIVDDPRYASEPSKEEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRG 186
N DP Y P K+ P E LK T+ER LPYW + I P + GKK+L+AAHGNSLR
Sbjct: 120 GN---DPVYKDIP-KDALPNTECLKDTVERVLPYWEDHIAPDILAGKKVLVAAHGNSLRA 175
Query: 187 IVKHLDNMSDEAIMGLNLPTGIPFVTQ 213
+VK+LD MS+E I+ LN+PTG+P V +
Sbjct: 176 LVKYLDKMSEEDILELNIPTGVPLVYE 202
>gnl|CDD|184519 PRK14120, gpmA, phosphoglyceromutase; Provisional.
Length = 249
Score = 222 bits (569), Expect = 1e-73
Identities = 100/203 (49%), Positives = 120/203 (59%), Gaps = 26/203 (12%)
Query: 9 EAEAAGVALAKAGFKFDVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLNERHYGGLT 68
EA+ G LA+AG DV +TS+L RA T L + +PV +SWRLNERHYG L
Sbjct: 38 EAKRGGELLAEAGVLPDVVYTSLLRRAIRTANLALDAADRLWIPVRRSWRLNERHYGALQ 97
Query: 69 GLDKAATAAKYGEEQVLIWRRSFDIPPPAMEKDHTSGDCRNYEKLVMAKQNKKDHAYYSN 128
G DKA T A+YGEEQ ++WRRS+D PPP +E + YS
Sbjct: 98 GKDKAETKAEYGEEQFMLWRRSYDTPPPPIEDG----------------------SEYSQ 135
Query: 129 IVDDPRYASEPSKEEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIV 188
+DPRYA P E LK + R LPYW + IVP LK GK +LIAAHGNSLR +V
Sbjct: 136 -DNDPRYADLGVG---PRTECLKDVVARFLPYWEDDIVPDLKAGKTVLIAAHGNSLRALV 191
Query: 189 KHLDNMSDEAIMGLNLPTGIPFV 211
KHLD +SDE I GLN+PTGIP V
Sbjct: 192 KHLDGISDEDIAGLNIPTGIPLV 214
>gnl|CDD|172608 PRK14118, gpmA, phosphoglyceromutase; Provisional.
Length = 227
Score = 195 bits (497), Expect = 3e-63
Identities = 97/206 (47%), Positives = 127/206 (61%), Gaps = 26/206 (12%)
Query: 7 VNEAEAAGVALAKAGFKFDVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLNERHYGG 66
V EA+AAG L +AG++FD+A TSVLTRA T +L+ Q +P K+WRLNERHYG
Sbjct: 32 VEEAKAAGKKLKEAGYEFDIAFTSVLTRAIKTCNIVLEESNQLWIPQVKNWRLNERHYGA 91
Query: 67 LTGLDKAATAAKYGEEQVLIWRRSFDIPPPAME-KDHTSGDCRNYEKLVMAKQNKKDHAY 125
L GLDK ATA +YG+EQV IWRRS+D PP ++ +D S
Sbjct: 92 LQGLDKKATAEQYGDEQVHIWRRSYDTLPPDLDPQDPNSAH------------------- 132
Query: 126 YSNIVDDPRYASEPSKEEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLR 185
+D RYA P + P E+LK+T+ER LP+W + I P L GK++L+AAHGNSLR
Sbjct: 133 -----NDRRYAHLP-ADVVPDAENLKVTLERVLPFWEDQIAPALLSGKRVLVAAHGNSLR 186
Query: 186 GIVKHLDNMSDEAIMGLNLPTGIPFV 211
+ KH++ +SD IM L +PTG P V
Sbjct: 187 ALAKHIEGISDADIMDLEIPTGQPLV 212
>gnl|CDD|172606 PRK14116, gpmA, phosphoglyceromutase; Provisional.
Length = 228
Score = 186 bits (474), Expect = 1e-59
Identities = 93/206 (45%), Positives = 125/206 (60%), Gaps = 26/206 (12%)
Query: 7 VNEAEAAGVALAKAGFKFDVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLNERHYGG 66
V EA+ AG + +AG +FD A+TSVLTRA TL L+ Q +P K+WRLNERHYG
Sbjct: 33 VEEAKKAGRLIKEAGLEFDQAYTSVLTRAIKTLHYALEESDQLWIPETKTWRLNERHYGA 92
Query: 67 LTGLDKAATAAKYGEEQVLIWRRSFDIPPPAMEKDHTSGDCRNYEKLVMAKQNKKDHAYY 126
L GL+K TA KYG+EQV IWRRS+D+ PP ++ D
Sbjct: 93 LQGLNKKETAEKYGDEQVHIWRRSYDVLPPLLDADDE----------------------- 129
Query: 127 SNIVDDPRYAS-EPSKEEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLR 185
+ D RYA+ +P P E+LK+T+ER +P+W + I P L +GK ++IAAHGNSLR
Sbjct: 130 GSAAKDRRYANLDP--RIIPGGENLKVTLERVIPFWEDHIAPDLLDGKNVIIAAHGNSLR 187
Query: 186 GIVKHLDNMSDEAIMGLNLPTGIPFV 211
+ K+++N+SDE IM L + TG P V
Sbjct: 188 ALTKYIENISDEDIMNLEMATGEPVV 213
>gnl|CDD|184518 PRK14119, gpmA, phosphoglyceromutase; Provisional.
Length = 228
Score = 183 bits (467), Expect = 1e-58
Identities = 83/207 (40%), Positives = 116/207 (56%), Gaps = 28/207 (13%)
Query: 7 VNEAEAAGVALAKAGFKFDVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLNERHYGG 66
+NEA AG + + DVA TS+LTRA +T IL Q+ +PV+KSWRLNERHYGG
Sbjct: 33 INEATRAGEKVRENNIAIDVAFTSLLTRALDTTHYILTESKQQWIPVYKSWRLNERHYGG 92
Query: 67 LTGLDKAATAAKYGEEQVLIWRRSFDIPPPAMEKDHTSGDC--RNYEKLVMAKQNKKDHA 124
L GL+K ++GEEQV IWRRS+D+ PPA ++ R Y L
Sbjct: 93 LQGLNKDDARKEFGEEQVHIWRRSYDVKPPAETEEQREAYLADRRYNHL----------- 141
Query: 125 YYSNIVDDPRYASEPSKEEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSL 184
K P ESLK T+ R +P+W + I L +G+ +L++AHGNS+
Sbjct: 142 ---------------DKRMMPYSESLKDTLVRVIPFWTDHISQYLLDGQTVLVSAHGNSI 186
Query: 185 RGIVKHLDNMSDEAIMGLNLPTGIPFV 211
R ++K+L+++SDE I+ + TG P V
Sbjct: 187 RALIKYLEDVSDEDIINYEIKTGAPLV 213
>gnl|CDD|167205 PRK01295, PRK01295, phosphoglyceromutase; Provisional.
Length = 206
Score = 182 bits (464), Expect = 2e-58
Identities = 83/205 (40%), Positives = 109/205 (53%), Gaps = 49/205 (23%)
Query: 7 VNEAEAAGVALAKAGFKFDVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLNERHYGG 66
V EA+AAG L AG KFD+A TS L+RAQ+T + IL+ +GQ L + LNER YG
Sbjct: 34 VAEAKAAGRKLKAAGLKFDIAFTSALSRAQHTCQLILEELGQPGLETIRDQALNERDYGD 93
Query: 67 LTGLDKAATAAKYGEEQVLIWRRSFDIPPPAMEKDHTSGDCRNYEKLVMAKQNKKDHAYY 126
L+GL+K AK+GEEQV IWRRS+D+PPP E
Sbjct: 94 LSGLNKDDARAKWGEEQVHIWRRSYDVPPPGGE--------------------------- 126
Query: 127 SNIVDDPRYASEPSKEEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRG 186
SLK T R LPY+ I+P++ G+++L+AAHGNSLR
Sbjct: 127 ----------------------SLKDTGARVLPYYLQEILPRVLRGERVLVAAHGNSLRA 164
Query: 187 IVKHLDNMSDEAIMGLNLPTGIPFV 211
+V LD ++ E I+ L L TG+P V
Sbjct: 165 LVMVLDGLTPEQILKLELATGVPIV 189
>gnl|CDD|184517 PRK14117, gpmA, phosphoglyceromutase; Provisional.
Length = 230
Score = 180 bits (458), Expect = 3e-57
Identities = 91/204 (44%), Positives = 125/204 (61%), Gaps = 26/204 (12%)
Query: 9 EAEAAGVALAKAGFKFDVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLNERHYGGLT 68
+A AG + +AG +FD+A TSVL RA T L+ Q +PV KSWRLNERHYGGLT
Sbjct: 35 QAIDAGKLIKEAGIEFDLAFTSVLKRAIKTTNLALEASDQLWVPVEKSWRLNERHYGGLT 94
Query: 69 GLDKAATAAKYGEEQVLIWRRSFDIPPPAMEKDHTSGDCRNYEKLVMAKQNKKDHAYYSN 128
G +KA A ++G+EQV IWRRS+D+ PPAM KD +++ ++
Sbjct: 95 GKNKAEAAEQFGDEQVHIWRRSYDVLPPAMAKDD-------------------EYSAHT- 134
Query: 129 IVDDPRYAS-EPSKEEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGI 187
D RYAS + S P E+LK+T+ER LP+W + I P LK+GK + + AHGNS+R +
Sbjct: 135 ---DRRYASLDDSV--IPDAENLKVTLERALPFWEDKIAPALKDGKNVFVGAHGNSIRAL 189
Query: 188 VKHLDNMSDEAIMGLNLPTGIPFV 211
VKH+ +SD+ IM + +P P V
Sbjct: 190 VKHIKGLSDDEIMDVEIPNFPPLV 213
>gnl|CDD|234902 PRK01112, PRK01112, phosphoglyceromutase; Provisional.
Length = 228
Score = 143 bits (363), Expect = 7e-43
Identities = 72/231 (31%), Positives = 100/231 (43%), Gaps = 81/231 (35%)
Query: 9 EAEAAGVALAKAGFKFDVAHTSVLTRAQNTLKAIL------------------------- 43
EA AAG + D TS L R+ T A+L
Sbjct: 35 EAIAAGEKIKD--LPIDCIFTSTLVRSLMT--ALLAMTNHSSGKIPYIVHEEDDKKWMSR 90
Query: 44 ---KGIGQEDLPVHKSWRLNERHYGGLTGLDKAATAAKYGEEQVLIWRRSFDIPPPAMEK 100
++ +P+ +S LNER YG L G +KA TA K+GEEQV +WRRS+ PP
Sbjct: 91 IYSDEEPEQMIPLFQSSALNERMYGELQGKNKAETAEKFGEEQVKLWRRSYKTAPP---- 146
Query: 101 DHTSGDCRNYEKLVMAKQNKKDHAYYSNIVDDPRYASEPSKEEFPMFESLKLTIERTLPY 160
G ESL+ T +RTLPY
Sbjct: 147 ---QG------------------------------------------ESLEDTGQRTLPY 161
Query: 161 WNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMSDEAIMGLNLPTGIPFV 211
+ N I+P L++GK + ++AHGNSLR ++ L+ +S+E ++ L LPTG P V
Sbjct: 162 FQNRILPHLQQGKNVFVSAHGNSLRSLIMDLEKLSEEEVLSLELPTGKPIV 212
>gnl|CDD|214859 smart00855, PGAM, Phosphoglycerate mutase family. Phosphoglycerate
mutase (PGAM) and bisphosphoglycerate mutase (BPGM) are
structurally related enzymes that catalyse reactions
involving the transfer of phospho groups between the
three carbon atoms of phosphoglycerate... Both enzymes
can catalyse three different reactions with different
specificities, the isomerization of 2-phosphoglycerate
(2-PGA) to 3-phosphoglycerate (3-PGA) with
2,3-diphosphoglycerate (2,3-DPG) as the primer of the
reaction, the synthesis of 2,3-DPG from 1,3-DPG with
3-PGA as a primer and the degradation of 2,3-DPG to
3-PGA (phosphatase activity). In mammals, PGAM is a
dimeric protein with two isoforms, the M (muscle) and B
(brain) forms. In yeast, PGAM is a tetrameric protein.
Length = 158
Score = 91.8 bits (228), Expect = 1e-23
Identities = 48/178 (26%), Positives = 66/178 (37%), Gaps = 55/178 (30%)
Query: 9 EAEAAGVALAKAG-FKFDVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLNERHYGGL 67
+AEA G LA +FDV ++S L RA+ T +A+ +G L ER +G
Sbjct: 33 QAEALGRLLASLLLPRFDVVYSSPLKRARQTAEALAIALGL--------PGLRERDFGAW 84
Query: 68 TGLDKAATAAKYGEEQVLIWRRSFDIPPPAMEKDHTSGDCRNYEKLVMAKQNKKDHAYYS 127
GL AAKY EE + WR +D PPA
Sbjct: 85 EGLTWDEIAAKYPEEYLAAWRDPYDPAPPA------------------------------ 114
Query: 128 NIVDDPRYASEPSKEEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLR 185
P ESL +ER P + +I G+ +LI +HG +R
Sbjct: 115 ----------------PPGGESLADLVERVEPALDELIATADASGQNVLIVSHGGVIR 156
>gnl|CDD|215845 pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch
1). The histidine phosphatase superfamily is so named
because catalysis centres on a conserved His residue
that is transiently phosphorylated during the catalytic
cycle. Other conserved residues contribute to a
'phosphate pocket' and interact with the phospho group
of substrate before, during and after its transfer to
the His residue. Structure and sequence analyses show
that different families contribute different additional
residues to the 'phosphate pocket' and, more
surprisingly, differ in the position, in sequence and in
three dimensions, of a catalytically essential acidic
residue. The superfamily may be divided into two main
branches. The larger branch 1 contains a wide variety of
catalytic functions, the best known being fructose
2,6-bisphosphatase (found in a bifunctional protein with
2-phosphofructokinase) and cofactor-dependent
phosphoglycerate mutase. The latter is an unusual
example of a mutase activity in the superfamily: the
vast majority of members appear to be phosphatases. The
bacterial regulatory protein phosphatase SixA is also in
branch 1 and has a minimal, and possible ancestral-like
structure, lacking the large domain insertions that
contribute to binding of small molecules in branch 1
members.
Length = 154
Score = 72.5 bits (178), Expect = 3e-16
Identities = 35/179 (19%), Positives = 54/179 (30%), Gaps = 54/179 (30%)
Query: 9 EAEAAGVALAKAGFKFDVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLNERHYGGLT 68
+A + G FD ++S L RA T + + + +G LP+ RL ER +G
Sbjct: 30 REQARALGKRLKGIPFDRIYSSPLLRAIQTAEILAEALG---LPIIVDPRLRERDFGDWE 86
Query: 69 GLDKAATAAKYGEEQVLIWRRSFDIPPPAMEKDHTSGDCRNYEKLVMAKQNKKDHAYYSN 128
GL A++ EE D PP E
Sbjct: 87 GLTFDEIKAEFPEELRAWLEDPADFRPPGGE----------------------------- 117
Query: 129 IVDDPRYASEPSKEEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGI 187
S + ER ++ G +LI +HG +R +
Sbjct: 118 -----------SLADV---------YERVEAALEELL--AKHPGGNVLIVSHGGVIRAL 154
>gnl|CDD|132716 cd07040, HP, Histidine phosphatase domain found in a functionally
diverse set of proteins, mostly phosphatases; contains a
His residue which is phosphorylated during the reaction.
Catalytic domain of a functionally diverse set of
proteins, most of which are phosphatases. The conserved
catalytic core of this domain contains a His residue
which is phosphorylated in the reaction. This set of
proteins includes cofactor-dependent and
cofactor-independent phosphoglycerate mutases (dPGM, and
BPGM respectively), fructose-2,6-bisphosphatase
(F26BP)ase, Sts-1, SixA, histidine acid phosphatases,
phytases, and related proteins. Functions include roles
in metabolism, signaling, or regulation, for example
F26BPase affects glycolysis and gluconeogenesis through
controlling the concentration of F26BP; BPGM controls
the concentration of 2,3-BPG (the main allosteric
effector of hemoglobin in human blood cells); human
Sts-1 is a T-cell regulator; Escherichia coli Six A
participates in the ArcB-dependent His-to-Asp
phosphorelay signaling system; phytases scavenge
phosphate from extracellular sources. Deficiency and
mutation in many of the human members result in disease,
for example erythrocyte BPGM deficiency is a disease
associated with a decrease in the concentration of
2,3-BPG. Clinical applications include the use of
prostatic acid phosphatase (PAP) as a serum marker for
prostate cancer. Agricultural applications include the
addition of phytases to animal feed.
Length = 153
Score = 62.4 bits (152), Expect = 1e-12
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 146 MFESLKLTI---ERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMSDEAIMGL 202
+FE L + + R L ++ L +GK +LI +HG ++R ++ L +SDE I+ L
Sbjct: 70 LFEGLPVEVDPRARVLNALLELLARHLLDGKNVLIVSHGGTIRALLAALLGLSDEEILSL 129
Query: 203 NLPTGIPFVT 212
NLP G V
Sbjct: 130 NLPNGSILVL 139
Score = 54.3 bits (131), Expect = 2e-09
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 7 VNEAEAAGVALAKAGFKFDVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWR 58
+A G AL + KFD ++S L RA T + IL+G+ + LPV R
Sbjct: 31 RQQARELGKALRERYIKFDRIYSSPLKRAIQTAEIILEGLFE-GLPVEVDPR 81
>gnl|CDD|132718 cd07067, HP_PGM_like, Histidine phosphatase domain found in
phosphoglycerate mutases and related proteins, mostly
phosphatases; contains a His residue which is
phosphorylated during the reaction. Subgroup of the
catalytic domain of a functionally diverse set of
proteins, most of which are phosphatases. The conserved
catalytic core of this domain contains a His residue
which is phosphorylated in the reaction. This subgroup
contains cofactor-dependent and cofactor-independent
phosphoglycerate mutases (dPGM, and BPGM respectively),
fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA,
and related proteins. Functions include roles in
metabolism, signaling, or regulation, for example,
F26BPase affects glycolysis and gluconeogenesis through
controlling the concentration of F26BP; BPGM controls
the concentration of 2,3-BPG (the main allosteric
effector of hemoglobin in human blood cells); human
Sts-1 is a T-cell regulator; Escherichia coli Six A
participates in the ArcB-dependent His-to-Asp
phosphorelay signaling system. Deficiency and mutation
in many of the human members result in disease, for
example erythrocyte BPGM deficiency is a disease
associated with a decrease in the concentration of
2,3-BPG.
Length = 153
Score = 62.3 bits (152), Expect = 2e-12
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 7 VNEAEAAGVALAKAGFKFDVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLNE 61
+A A G L + G KFD ++S L RA T + IL+ + LPV RL E
Sbjct: 31 REQARALGKRLKELGIKFDRIYSSPLKRAIQTAEIILEEL--PGLPVEVDPRLRE 83
Score = 62.0 bits (151), Expect = 3e-12
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 155 ERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMSDEAIMGLNLPTGIPFV 211
R LP +I P +GK +LI +HG LR ++ +L +SDE I+ LNLP G V
Sbjct: 84 ARVLPALEELIAPH--DGKNVLIVSHGGVLRALLAYLLGLSDEDILRLNLPNGSISV 138
>gnl|CDD|223483 COG0406, phoE, Broad specificity phosphatase PhoE and related
phosphatases [General function prediction only].
Length = 208
Score = 55.2 bits (133), Expect = 2e-09
Identities = 40/198 (20%), Positives = 66/198 (33%), Gaps = 54/198 (27%)
Query: 10 AEAAGVALAKAGFKFDVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLNERHYGGLTG 69
AEA LA FD ++S L RAQ T + + + +G LP+ RL E +G G
Sbjct: 37 AEALAERLAARDIGFDAIYSSPLKRAQQTAEPLAEELG---LPLEVDDRLREIDFGDWEG 93
Query: 70 LDKAATAAKYGEEQVLIWRRSFDIPPPAMEKDHTSGDCRNYEKLVMAKQNKKDHAYYSNI 129
L A + EE
Sbjct: 94 LTIDELAEEPPEE----------------------------------------------- 106
Query: 130 VDDPRYASEPSKEEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVK 189
+ ++P P ESL +R + ++ + G +L+ +HG +R ++
Sbjct: 107 --LAAWLADPYLAPPPGGESLADVSKRVVAALAELL--RSPPGNNVLVVSHGGVIRALLA 162
Query: 190 HLDNMSDEAIMGLNLPTG 207
+L + E + L L
Sbjct: 163 YLLGLDLEELWRLRLDNA 180
>gnl|CDD|234131 TIGR03162, ribazole_cobC, alpha-ribazole phosphatase. Members of
this protein family include the known CobC protein of
Salmonella and Eschichia coli species, and homologous
proteins found in cobalamin biosynthesis regions in
other bacteria. This protein is alpha-ribazole
phosphatase (EC 3.1.3.73) and, like many phosphatases,
can be closely related in sequence to other phosphatases
with different functions. Close homologs excluded from
this model include proteins with duplications, so this
model is built in -g mode to suppress hits to those
proteins [Biosynthesis of cofactors, prosthetic groups,
and carriers, Heme, porphyrin, and cobalamin].
Length = 177
Score = 49.9 bits (120), Expect = 7e-08
Identities = 43/200 (21%), Positives = 68/200 (34%), Gaps = 57/200 (28%)
Query: 9 EAEAAGVALAKAGFKFDVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLNERHYGGLT 68
E +AA + A FD ++S L+R + + + + LP+ K RL E +G
Sbjct: 29 EEQAAALREKLADVPFDAVYSSPLSRCRELAEILA---ERRGLPIIKDDRLREMDFGDWE 85
Query: 69 GLDKAATAAKYGEEQVLIWRRSFD-IPPPAMEKDHTSGDCRNYEKLVMAKQNKKDHAYYS 127
G RS+D IP E D A+
Sbjct: 86 G-------------------RSWDEIPEAYPELD----------------------AWA- 103
Query: 128 NIVDDPRYASEPSKEEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGI 187
D ++A P E F F +R + ++ EG +LI HG +R +
Sbjct: 104 ---ADWQHARPPGGESFADFY------QRVSEFLEELLKAH--EGDNVLIVTHGGVIRAL 152
Query: 188 VKHLDNMSDEAIMGLNLPTG 207
+ HL + E + G
Sbjct: 153 LAHLLGLPLEQWWSFAVEYG 172
>gnl|CDD|184966 PRK15004, PRK15004, alpha-ribazole phosphatase; Provisional.
Length = 199
Score = 41.2 bits (97), Expect = 1e-04
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 7 VNEAEAAGVALAKAGFKFDVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLNERHYG 65
+ +A+ L FD+ S L RAQ+T + +L LPVH LNE +G
Sbjct: 32 IEQAQNLHTLLR--DVPFDLVLCSELERAQHTARLVLSD---RQLPVHIIPELNEMFFG 85
>gnl|CDD|224973 COG2062, SixA, Phosphohistidine phosphatase SixA [Signal
transduction mechanisms].
Length = 163
Score = 38.0 bits (89), Expect = 0.001
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Query: 1 MDDFDR------VNEAEAAGVALAKAGFKFDVAHTSVLTRAQNTLKAILKGIGQE 49
+ DFDR EAE LA G + D+ S RA+ T + + + +G++
Sbjct: 19 IADFDRPLTERGRKEAELVAAWLAGQGVEPDLVLVSPAVRARQTAEIVAEHLGEK 73
>gnl|CDD|163560 TIGR03848, MSMEG_4193, probable phosphomutase, MSMEG_4193 family.
A three-gene system broadly conserved among the
Actinobacteria includes MSMEG_4193 and homologs, a
subgroup among the larger phosphoglycerate mutase
family protein (pfam00300). Another member of the trio
is a probable kinase, related to phosphatidylinositol
kinases; that context supports the hypothesis that this
protein acts as a phosphomutase.
Length = 204
Score = 33.1 bits (76), Expect = 0.071
Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 3/67 (4%)
Query: 3 DFDRVNEAEAAGVALAKAGFKFDVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLNER 62
D D +AA +A A +S L R + T + I + G LP RL E
Sbjct: 26 DLDERGREQAAALAERLADLPIAAIVSSPLERCRETAEPIAEARG---LPPRVDERLGEC 82
Query: 63 HYGGLTG 69
YG TG
Sbjct: 83 DYGDWTG 89
>gnl|CDD|131724 TIGR02677, TIGR02677, TIGR02677 family protein. Members of this
protein belong to a conserved gene four-gene
neighborhood found sporadically in a phylogenetically
broad range of bacteria: Nocardia farcinica,
Symbiobacterium thermophilum, and Streptomyces
avermitilis (Actinobacteria), Geobacillus kaustophilus
(Firmicutes), Azoarcus sp. EbN1 and Ralstonia
solanacearum (Betaproteobacteria) [Hypothetical
proteins, Conserved].
Length = 494
Score = 30.2 bits (68), Expect = 0.73
Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Query: 9 EAEAAGVALAKAGFKFDVAHTSVLTRAQNTLKAILKGIGQ---EDLPVHKSWRLNERHYG 65
AEAA L +A T+ L L+ +L I Q + VH++ R +
Sbjct: 96 AAEAALRTLEQALGSRGALQTAALDDIVQRLRELLALIDQPRPDAREVHRTLRELYGSFE 155
Query: 66 GL 67
L
Sbjct: 156 SL 157
>gnl|CDD|140280 PTZ00253, PTZ00253, tryparedoxin peroxidase; Provisional.
Length = 199
Score = 28.7 bits (64), Expect = 1.8
Identities = 30/86 (34%), Positives = 39/86 (45%), Gaps = 16/86 (18%)
Query: 54 HKSWRLNERHYGGLTGL------DKAATAAK-YG---EEQVLIWRRSFDIPPPAMEKDHT 103
H W L ER GGL + DK + A+ YG EEQ + +R F I P M + T
Sbjct: 84 HLQWTLQERKKGGLGTMAIPMLADKTKSIARSYGVLEEEQGVAYRGLFIIDPKGMLRQIT 143
Query: 104 SGDC---RNYE---KLVMAKQNKKDH 123
D RN E +L+ A Q + H
Sbjct: 144 VNDMPVGRNVEEVLRLLEAFQFVEKH 169
>gnl|CDD|130488 TIGR01421, gluta_reduc_1, glutathione-disulfide reductase,
animal/bacterial. The tripeptide glutathione is an
important reductant, e.g., for maintaining the cellular
thiol/disulfide status and for protecting against
reactive oxygen species such as hydrogen peroxide.
Glutathione-disulfide reductase regenerates reduced
glutathione from oxidized glutathione (glutathione
disulfide) + NADPH. This model represents one of two
closely related subfamilies of glutathione-disulfide
reductase. Both are closely related to trypanothione
reductase, and separate models are built so each of the
three can describe proteins with conserved function.
This model describes glutathione-disulfide reductases of
animals, yeast, and a number of animal-resident bacteria
[Energy metabolism, Electron transport].
Length = 450
Score = 28.3 bits (63), Expect = 3.8
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 66 GLTGLDKAATAAKYGEEQVLIWRRSFDIPPPAMEKDHTSGDCRNYEKLVMAKQNKK 121
G GL + KYG+E + ++ SF AM + CR KLV A + +K
Sbjct: 350 GTIGLTEKEAIEKYGKENIKVYNSSFTPMYYAMTSEKQ--KCR--MKLVCAGKEEK 401
>gnl|CDD|237200 PRK12778, PRK12778, putative bifunctional 2-polyprenylphenol
hydroxylase/glutamate synthase subunit beta;
Provisional.
Length = 752
Score = 27.8 bits (62), Expect = 5.2
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 65 GGLTGLDKAATAAKYGEEQV-LIWRRSFDIPPPAME 99
GG T +D A TA + G E+V +++RRS + P +E
Sbjct: 578 GGNTAMDSARTAKRLGAERVTIVYRRSEEEMPARLE 613
>gnl|CDD|139246 PRK12814, PRK12814, putative NADPH-dependent glutamate synthase
small subunit; Provisional.
Length = 652
Score = 27.8 bits (62), Expect = 5.5
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 65 GGLTGLDKAATAAKYGEEQV-LIWRRS 90
GG T +D A TA + G E V +++RR+
Sbjct: 331 GGNTAIDAARTALRLGAESVTILYRRT 357
>gnl|CDD|184191 PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional.
Length = 443
Score = 27.5 bits (61), Expect = 6.7
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 144 FPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHG 181
+P SL L +PYWN+ ++ Q+ G L G
Sbjct: 169 WPFIASLVLISLSLIPYWNSAVIDQVDLGSLSLTGHDG 206
>gnl|CDD|176110 cd08418, PBP2_TdcA, The C-terminal substrate binding domain of
LysR-type transcriptional regulator TdcA, which is
involved in the degradation of L-serine and L-threonine,
contains the type 2 periplasmic binding fold. TdcA, a
member of the LysR family, activates the expression of
the anaerobically-regulated tdcABCDEFG operon which is
involved in the degradation of L-serine and L-threonine
to acetate and propionate, respectively. The tdc operon
is comprised of one regulatory gene tdcA and six
structural genes, tdcB to tdcG. The expression of the
tdc operon is affected by several transcription factors
including the cAMP receptor protein (CRP), integration
host factor (IHF), histone-like protein (HU), and the
operon specific regulators TdcA and TcdR. TcdR is
divergently transcribed from the operon and encodes a
small protein that is required for efficient expression
of the Escherichia coli tdc operon. This
substrate-binding domain shows significant homology to
the type 2 periplasmic binding proteins (PBP2), which
are responsible for the uptake of a variety of
substrates such as phosphate, sulfate, polysaccharides,
lysine/arginine/ornithine, and histidine. The PBP2 bind
their ligand in the cleft between these domains in a
manner resembling a Venus flytrap. After binding their
specific ligand with high affinity, they can interact
with a cognate membrane transport complex comprised of
two integral membrane domains and two cytoplasmically
located ATPase domains. This interaction triggers the
ligand translocation across the cytoplasmic membrane
energized by ATP hydrolysis.
Length = 201
Score = 26.9 bits (60), Expect = 6.9
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 100 KDHTSGDCRNYEKLVMAKQ--NKKDHAYYSNIVD 131
KDH R+ E+L+ A YY+N+++
Sbjct: 82 KDHPLQGARSLEELLDASWVLPGTRMGYYNNLLE 115
>gnl|CDD|183740 PRK12779, PRK12779, putative bifunctional glutamate synthase
subunit beta/2-polyprenylphenol hydroxylase;
Provisional.
Length = 944
Score = 27.1 bits (60), Expect = 8.7
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 65 GGLTGLDKAATAAKYGEEQVLIWRRSFDIPPPAMEKDH 102
GG T +D A TA + G +++RR+ P +E+ H
Sbjct: 455 GGNTAMDAARTAKRLGGNVTIVYRRTKSEMPARVEELH 492
>gnl|CDD|235287 PRK04342, PRK04342, DNA topoisomerase VI subunit A; Provisional.
Length = 367
Score = 26.8 bits (60), Expect = 9.6
Identities = 15/82 (18%), Positives = 32/82 (39%), Gaps = 8/82 (9%)
Query: 103 TSGDCRNYE-KLVMAKQNKKDHAYYSNIVDDPRYASEPSKEEFPMFESLKLTIE------ 155
T D YE L K D +++ P + ++ ++E +F + E
Sbjct: 286 TPSDIVEYERDLPTIKLKDSDIKRAKELLNYPWFQTDFWQKEINLFLKIGKKAEQQALAS 345
Query: 156 RTLPYWNNVIVPQ-LKEGKKIL 176
+ L + + +P+ L+E +
Sbjct: 346 KGLKFVTDEYLPEKLEEKDWLD 367
>gnl|CDD|222011 pfam13257, DUF4048, Domain of unknown function (DUF4048). This
presumed domain is functionally uncharacterized. This
domain family is found in eukaryotes, and is typically
between 228 and 257 amino acids in length.
Length = 242
Score = 26.7 bits (59), Expect = 9.7
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 73 AATAAKYGEEQVLIWRRSFDIPPPAME 99
A +AA+ E+ WRR+ +PPP+ E
Sbjct: 56 ALSAAQSTEDMKAQWRRT--LPPPSRE 80
>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584). This
protein is found in bacteria and eukaryotes. Proteins in
this family are typically between 943 to 1234 amino acids
in length. This family contains a P-loop motif suggesting
it is a nucleotide binding protein. It may be involved in
replication.
Length = 1198
Score = 27.0 bits (60), Expect = 9.9
Identities = 6/34 (17%), Positives = 16/34 (47%)
Query: 161 WNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNM 194
+++VPQ ++ + + +G L L++
Sbjct: 968 LLDLLVPQKRQALREQVTINGGMLNEFYDVLEDF 1001
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.134 0.397
Gapped
Lambda K H
0.267 0.0657 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,163,392
Number of extensions: 1045231
Number of successful extensions: 995
Number of sequences better than 10.0: 1
Number of HSP's gapped: 979
Number of HSP's successfully gapped: 49
Length of query: 215
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 122
Effective length of database: 6,812,680
Effective search space: 831146960
Effective search space used: 831146960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (25.9 bits)