RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11845
(215 letters)
>2hhj_A Bisphosphoglycerate mutase; isomerase; HET: NEP DG2 3PG; 1.50A
{Homo sapiens} SCOP: c.60.1.1 PDB: 1t8p_A* 2f90_A*
2a9j_A* 2h4z_A* 2h52_A* 2h4x_A* 3nfy_A
Length = 267
Score = 326 bits (838), Expect = e-114
Identities = 90/206 (43%), Positives = 123/206 (59%), Gaps = 22/206 (10%)
Query: 7 VNEAEAAGVALAKAGFKFDVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLNERHYGG 66
+ EA G L F+FD+ TSVL R+ +T IL+ +GQE +PV SWRLNERHYG
Sbjct: 35 MEEARNCGKQLKALNFEFDLVFTSVLNRSIHTAWLILEELGQEWVPVESSWRLNERHYGA 94
Query: 67 LTGLDKAATAAKYGEEQVLIWRRSFDIPPPAMEKDHTSGDCRNYEKLVMAKQNKKDHAYY 126
L GL++ A +GEEQV +WRRS+++ PP +E + H YY
Sbjct: 95 LIGLNREQMALNHGEEQVRLWRRSYNVTPPPIE---------------------ESHPYY 133
Query: 127 SNIVDDPRYAS-EPSKEEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLR 185
I +D RY + ++ P ESLK +ER LPYWN I P++ GK ILI+AHGNS R
Sbjct: 134 QEIYNDRRYKVCDVPLDQLPRSESLKDVLERLLPYWNERIAPEVLRGKTILISAHGNSSR 193
Query: 186 GIVKHLDNMSDEAIMGLNLPTGIPFV 211
++KHL+ +SDE I+ + LPTG+P +
Sbjct: 194 ALLKHLEGISDEDIINITLPTGVPIL 219
>1yfk_A Phosphoglycerate mutase 1; alpha/beta, isomerase, hydrolase; HET:
CIT; 2.70A {Homo sapiens} PDB: 1yjx_A*
Length = 262
Score = 325 bits (836), Expect = e-114
Identities = 117/205 (57%), Positives = 139/205 (67%), Gaps = 22/205 (10%)
Query: 7 VNEAEAAGVALAKAGFKFDVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLNERHYGG 66
EA+ G AL AG++FD+ TSV RA TL +L I Q LPV ++WRLNERHYGG
Sbjct: 35 HEEAKRGGQALRDAGYEFDICFTSVQKRAIRTLWTVLDAIDQMWLPVVRTWRLNERHYGG 94
Query: 67 LTGLDKAATAAKYGEEQVLIWRRSFDIPPPAMEKDHTSGDCRNYEKLVMAKQNKKDHAYY 126
LTGL+KA TAAK+GE QV IWRRS+D+PPP ME DH +Y
Sbjct: 95 LTGLNKAETAAKHGEAQVKIWRRSYDVPPPPME---------------------PDHPFY 133
Query: 127 SNIVDDPRYASEPSKEEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRG 186
SNI D RYA +++ P ESLK TI R LP+WN IVPQ+KEGK++LIAAHGNSLRG
Sbjct: 134 SNISKDRRYADLT-EDQLPSCESLKDTIARALPFWNEEIVPQIKEGKRVLIAAHGNSLRG 192
Query: 187 IVKHLDNMSDEAIMGLNLPTGIPFV 211
IVKHL+ +S+EAIM LNLPTGIP V
Sbjct: 193 IVKHLEGLSEEAIMELNLPTGIPIV 217
>1qhf_A Protein (phosphoglycerate mutase); transferase (phosphoryl); HET:
3PG; 1.70A {Saccharomyces cerevisiae} SCOP: c.60.1.1
PDB: 5pgm_D 1bq3_D* 1bq4_D 4pgm_A 3pgm_A*
Length = 240
Score = 319 bits (820), Expect = e-112
Identities = 88/205 (42%), Positives = 111/205 (54%), Gaps = 24/205 (11%)
Query: 7 VNEAEAAGVALAKAGFKFDVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLNERHYGG 66
EA AG L + DV +TS L+RA T L+ + +PV++SWRLNERHYG
Sbjct: 32 QQEAARAGELLKEKKVYPDVLYTSKLSRAIQTANIALEKADRLWIPVNRSWRLNERHYGD 91
Query: 67 LTGLDKAATAAKYGEEQVLIWRRSFDIPPPAMEKDHTSGDCRNYEKLVMAKQNKKDHAYY 126
L G DKA T K+GEE+ +RRSFD+PPP ++ +
Sbjct: 92 LQGKDKAETLKKFGEEKFNTYRRSFDVPPPPID---------------------ASSPFS 130
Query: 127 SNIVDDPRYASEPSKEEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRG 186
D RY P ESL L I+R LPYW +VI L GK ++IAAHGNSLRG
Sbjct: 131 --QKGDERYKYVD-PNVLPETESLALVIDRLLPYWQDVIAKDLLSGKTVMIAAHGNSLRG 187
Query: 187 IVKHLDNMSDEAIMGLNLPTGIPFV 211
+VKHL+ +SD I LN+PTGIP V
Sbjct: 188 LVKHLEGISDADIAKLNIPTGIPLV 212
>3gp3_A 2,3-bisphosphoglycerate-dependent phosphoglycerat;
phosphoglyceromutase, decode, SBRI, niaid, UWPPG,
glycolysis isomerase; HET: PG4 SEP; 1.50A {Burkholderia
pseudomallei} PDB: 3fdz_A* 3ezn_A* 3gp5_A* 3gw8_A*
3lnt_A
Length = 257
Score = 318 bits (817), Expect = e-111
Identities = 100/205 (48%), Positives = 127/205 (61%), Gaps = 24/205 (11%)
Query: 7 VNEAEAAGVALAKAGFKFDVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLNERHYGG 66
EA AG L +AG+ FD+A+TSVL RA TL + + +PV SWRLNERHYG
Sbjct: 41 NREARQAGQLLKEAGYTFDIAYTSVLKRAIRTLWHVQDQMDLMYVPVVHSWRLNERHYGA 100
Query: 67 LTGLDKAATAAKYGEEQVLIWRRSFDIPPPAMEKDHTSGDCRNYEKLVMAKQNKKDHAYY 126
L+GL+KA TAAKYG+EQVL+WRRS+D PPPA+E
Sbjct: 101 LSGLNKAETAAKYGDEQVLVWRRSYDTPPPALE---------------------PGDERA 139
Query: 127 SNIVDDPRYASEPSKEEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRG 186
DPRYA P +E+ P+ E LK T+ R LP WN I P +K GK++LIAAHGNSLR
Sbjct: 140 --PYADPRYAKVP-REQLPLTECLKDTVARVLPLWNESIAPAVKAGKQVLIAAHGNSLRA 196
Query: 187 IVKHLDNMSDEAIMGLNLPTGIPFV 211
++K+LD +SD I+GLN+P G+P V
Sbjct: 197 LIKYLDGISDADIVGLNIPNGVPLV 221
>1e58_A Phosphoglycerate mutase; phosphohistidine, glycolysis and
gluconeogenesis, isomerase; HET: NEP; 1.25A {Escherichia
coli} SCOP: c.60.1.1 PDB: 1e59_A*
Length = 249
Score = 317 bits (816), Expect = e-111
Identities = 103/205 (50%), Positives = 134/205 (65%), Gaps = 24/205 (11%)
Query: 7 VNEAEAAGVALAKAGFKFDVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLNERHYGG 66
V+EA+AAG L + G+ FD A+TSVL RA +TL +L + Q LPV KSW+LNERHYG
Sbjct: 34 VSEAKAAGKLLKEEGYSFDFAYTSVLKRAIHTLWNVLDELDQAWLPVEKSWKLNERHYGA 93
Query: 67 LTGLDKAATAAKYGEEQVLIWRRSFDIPPPAMEKDHTSGDCRNYEKLVMAKQNKKDHAYY 126
L GL+KA TA KYG+EQV WRR F + PP + KD Y
Sbjct: 94 LQGLNKAETAEKYGDEQVKQWRRGFAVTPPELT---------------------KDDERY 132
Query: 127 SNIVDDPRYASEPSKEEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRG 186
DPRYA ++E P+ ESL LTI+R +PYWN I+P++K G++++IAAHGNSLR
Sbjct: 133 P--GHDPRYAKLS-EKELPLTESLALTIDRVIPYWNETILPRMKSGERVIIAAHGNSLRA 189
Query: 187 IVKHLDNMSDEAIMGLNLPTGIPFV 211
+VK+LDNMS+E I+ LN+PTG+P V
Sbjct: 190 LVKYLDNMSEEEILELNIPTGVPLV 214
>3d8h_A Glycolytic phosphoglycerate mutase; structural genomics, malaria,
glycolysis, I structural genomics consortium, SGC; 2.01A
{Cryptosporidium parvum}
Length = 267
Score = 318 bits (817), Expect = e-111
Identities = 87/205 (42%), Positives = 118/205 (57%), Gaps = 24/205 (11%)
Query: 7 VNEAEAAGVALAKAGFKFDVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLNERHYGG 66
V+EA AG L + GFKFDV +TSVL RA T +LK +G + P+ WRLNERHYG
Sbjct: 52 VSEAIEAGRMLLEKGFKFDVVYTSVLKRAIMTTWTVLKELGNINCPIINHWRLNERHYGA 111
Query: 67 LTGLDKAATAAKYGEEQVLIWRRSFDIPPPAMEKDHTSGDCRNYEKLVMAKQNKKDHAYY 126
L GL+K+ TA+K+GE+QV IWRRSFD+PPP +E K +
Sbjct: 112 LQGLNKSETASKFGEDQVKIWRRSFDVPPPVLE---------------------KSDPRW 150
Query: 127 SNIVDDPRYASEPSKEEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRG 186
++ Y P E LK T+ER PY+ +VI P + GK +L++AHGNSLR
Sbjct: 151 P--GNELIYKGIC-PSCLPTTECLKDTVERVKPYFEDVIAPSIMSGKSVLVSAHGNSLRA 207
Query: 187 IVKHLDNMSDEAIMGLNLPTGIPFV 211
++ L+ M+ E I+ +N+PT P V
Sbjct: 208 LLYLLEGMTPEQILEVNIPTACPLV 232
>3kkk_A Phosphoglycerate mutase; PGAM, glycolysis, malaria, structural
genomics, medical STRU genomics of pathogenic protozoa,
MSGPP; 2.08A {Plasmodium falciparum 3D7} PDB: 1xq9_A
Length = 258
Score = 317 bits (814), Expect = e-111
Identities = 95/205 (46%), Positives = 124/205 (60%), Gaps = 24/205 (11%)
Query: 7 VNEAEAAGVALAKAGFKFDVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLNERHYGG 66
EA AAG L + FKFDV +TSVL RA T +LK +PV K+WRLNERH G
Sbjct: 43 EEEAIAAGKYLKEKNFKFDVVYTSVLKRAICTAWNVLKTADLLHVPVVKTWRLNERHCGS 102
Query: 67 LTGLDKAATAAKYGEEQVLIWRRSFDIPPPAMEKDHTSGDCRNYEKLVMAKQNKKDHAYY 126
L GL+K+ TA KYGEEQV IWRRS+DIPPP ++ K+ +
Sbjct: 103 LQGLNKSETAKKYGEEQVKIWRRSYDIPPPKLD---------------------KEDNRW 141
Query: 127 SNIVDDPRYASEPSKEEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRG 186
+ Y + P K+ P E LK T+ER LP+W + I P + KK+++AAHGNSLRG
Sbjct: 142 --PGHNVVYKNVP-KDALPFTECLKDTVERVLPFWFDHIAPDILANKKVMVAAHGNSLRG 198
Query: 187 IVKHLDNMSDEAIMGLNLPTGIPFV 211
+VKHLDN+S+ ++ LN+PTG+P V
Sbjct: 199 LVKHLDNLSEADVLELNIPTGVPLV 223
>4emb_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; structural
genomics, niaid, national institute of allergy AN
infectious diseases; 2.30A {Borrelia burgdorferi}
Length = 274
Score = 317 bits (815), Expect = e-111
Identities = 94/205 (45%), Positives = 135/205 (65%), Gaps = 24/205 (11%)
Query: 7 VNEAEAAGVALAKAGFKFDVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLNERHYGG 66
++EA AG+ L + G+ FD+A +S+L+RA +TL IL+ +GQ + V K+WRLNERHYG
Sbjct: 59 IDEAVEAGLLLKQEGYSFDIAFSSLLSRANDTLNIILRELGQSYISVKKTWRLNERHYGA 118
Query: 67 LTGLDKAATAAKYGEEQVLIWRRSFDIPPPAMEKDHTSGDCRNYEKLVMAKQNKKDHAYY 126
L GL+K+ TAAKYGE++VLIWRRS+D+PP +++ + +
Sbjct: 119 LQGLNKSETAAKYGEDKVLIWRRSYDVPPMSLD---------------------ESDDRH 157
Query: 127 SNIVDDPRYASEPSKEEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRG 186
+ DPRY P K E P E LK T+ R +PYW + I ++ EGKK+++AAHGNSLR
Sbjct: 158 --PIKDPRYKHIP-KRELPSTECLKDTVARVIPYWTDEIAKEVLEGKKVIVAAHGNSLRA 214
Query: 187 IVKHLDNMSDEAIMGLNLPTGIPFV 211
+VK+ DN+S+E ++ LN+PTGIP V
Sbjct: 215 LVKYFDNLSEEDVLKLNIPTGIPLV 239
>1rii_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; phosphoglyerate
mutase, SH3 domain binding, structural genom TBSGC;
1.70A {Mycobacterium tuberculosis} SCOP: c.60.1.1
Length = 265
Score = 314 bits (808), Expect = e-110
Identities = 91/205 (44%), Positives = 115/205 (56%), Gaps = 26/205 (12%)
Query: 7 VNEAEAAGVALAKAGFKFDVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLNERHYGG 66
EA +G +A+ DV +TS+L RA T L + +PV +SWRLNERHYG
Sbjct: 36 QAEAVRSGELIAEHDLLPDVLYTSLLRRAITTAHLALDSADRLWIPVRRSWRLNERHYGA 95
Query: 67 LTGLDKAATAAKYGEEQVLIWRRSFDIPPPAMEKDHTSGDCRNYEKLVMAKQNKKDHAYY 126
L GLDKA T A+YGEEQ + WRRS+D PPP +E + +
Sbjct: 96 LQGLDKAETKARYGEEQFMAWRRSYDTPPPPIE---------------------RGSQFS 134
Query: 127 SNIVDDPRYASEPSKEEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRG 186
DPRYA P+ E L + R LPY+ +VIV L+ GK +LI AHGNSLR
Sbjct: 135 --QDADPRYADIG---GGPLTECLADVVARFLPYFTDVIVGDLRVGKTVLIVAHGNSLRA 189
Query: 187 IVKHLDNMSDEAIMGLNLPTGIPFV 211
+VKHLD MSD+ I+GLN+PTGIP
Sbjct: 190 LVKHLDQMSDDEIVGLNIPTGIPLR 214
>4eo9_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; structural
genomics, niaid, national institute of allergy AN
infectious diseases; 2.45A {Mycobacterium leprae}
Length = 268
Score = 314 bits (808), Expect = e-110
Identities = 90/205 (43%), Positives = 114/205 (55%), Gaps = 26/205 (12%)
Query: 7 VNEAEAAGVALAKAGFKFDVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLNERHYGG 66
EA +G LA+ DV +TS+L RA T L +PV +SWRLNERHYG
Sbjct: 59 RAEAVRSGELLAEHNLLPDVLYTSLLRRAITTAHLALDTADWLWIPVRRSWRLNERHYGA 118
Query: 67 LTGLDKAATAAKYGEEQVLIWRRSFDIPPPAMEKDHTSGDCRNYEKLVMAKQNKKDHAYY 126
L GLDKA T A+YGEE+ + WRRS+D PPP +E K +
Sbjct: 119 LQGLDKAVTKARYGEERFMAWRRSYDTPPPPIE---------------------KGSEFS 157
Query: 127 SNIVDDPRYASEPSKEEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRG 186
DPRY P+ E L + R LPY+ +VIVP L+ G+ +LI AHGNSLR
Sbjct: 158 --QDADPRYTDIG---GGPLTECLADVVTRFLPYFTDVIVPDLRTGRTVLIVAHGNSLRA 212
Query: 187 IVKHLDNMSDEAIMGLNLPTGIPFV 211
+VKHLD MSD+ ++GLN+PTGIP
Sbjct: 213 LVKHLDEMSDDEVVGLNVPTGIPLR 237
>1fzt_A Phosphoglycerate mutase; open B-sheet-helices, isomerase; NMR
{Schizosaccharomyces pombe} SCOP: c.60.1.1
Length = 211
Score = 285 bits (732), Expect = 4e-99
Identities = 78/205 (38%), Positives = 106/205 (51%), Gaps = 49/205 (23%)
Query: 7 VNEAEAAGVALAKAGFKFDVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLNERHYGG 66
+ EA+ G L G+KFD+A TS L RAQ T + IL+ +G+ +L KS +LNER+YG
Sbjct: 39 IKEAKLGGERLKSRGYKFDIAFTSALQRAQKTCQIILEEVGEPNLETIKSEKLNERYYGD 98
Query: 67 LTGLDKAATAAKYGEEQVLIWRRSFDIPPPAMEKDHTSGDCRNYEKLVMAKQNKKDHAYY 126
L GL+K K+G EQV IWRRS+DI PP
Sbjct: 99 LQGLNKDDARKKWGAEQVQIWRRSYDIAPPNG---------------------------- 130
Query: 127 SNIVDDPRYASEPSKEEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRG 186
ESLK T ER LPY+ + IVP + +G+K+LIAAHGNSLR
Sbjct: 131 ---------------------ESLKDTAERVLPYYKSTIVPHILKGEKVLIAAHGNSLRA 169
Query: 187 IVKHLDNMSDEAIMGLNLPTGIPFV 211
++ L+ ++ + I+ L TG+P V
Sbjct: 170 LIMDLEGLTGDQIVKRELATGVPIV 194
>3dcy_A Regulator protein; OMIM 610775, C12ORF5, tigar, TP53-induced
glycolysis and apoptosis regulator, CAsp target,
structural genomics medical relevance; HET: MSE; 1.75A
{Homo sapiens}
Length = 275
Score = 212 bits (541), Expect = 3e-69
Identities = 40/225 (17%), Positives = 74/225 (32%), Gaps = 42/225 (18%)
Query: 7 VNEAEAAGVALAKAGFKFDVAHTSVLTRAQNTLKAILKGIGQE-DLPVHKSWRLNERHYG 65
+A AAG+ L KF A +S L R + T+ IL+ D+ V RL ER YG
Sbjct: 41 FKQAAAAGIFLN--NVKFTHAFSSDLMRTKQTMHGILERSKFCKDMTVKYDSRLRERKYG 98
Query: 66 GLTGLDKA--ATAAKYGEEQVLIWRRSFDIPPPAMEKDHTSGDCRNYEKLVMAKQNKKDH 123
+ G + AK E+ ++ PP D +
Sbjct: 99 VVEGKALSELRAMAKAAREECPVFT-----PPGGETLDQVK---------------MRGI 138
Query: 124 AYYSNIVDDPRYASEPSK--EEFPMFESLKLTIERTLPYWNNVIVPQLKE------GKKI 175
++ + ++ + + L+ ++ P N + +
Sbjct: 139 DFFEFLCQLILKEADQKEQFSQGSPSNCLETSLAEIFPLGKNHSSKVNSDSGIPGLAASV 198
Query: 176 LIAAHGNSLRGIVKHL---------DNMSDEAIMGLNLPTGIPFV 211
L+ +HG +R + + +S +M + TG+
Sbjct: 199 LVVSHGAYMRSLFDYFLTDLKCSLPATLSRSELMSVTPNTGMSLF 243
>3r7a_A Phosphoglycerate mutase, putative; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG;
HET: MSE EPE; 1.84A {Bacillus anthracis}
Length = 237
Score = 180 bits (460), Expect = 2e-57
Identities = 38/212 (17%), Positives = 67/212 (31%), Gaps = 44/212 (20%)
Query: 7 VNEAEAAGVALAKAGFKFDVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLNERHYGG 66
V A G L F A++S RA T +LK Q L + + +L E ++G
Sbjct: 45 VEVATNLGTGLK--DIHFMNAYSSDSGRAIETANLVLKYSEQSKLKLEQRKKLRELNFGI 102
Query: 67 LTGLDKAATAAKYGEEQVLIWRRSFDIPPPAMEKDHTSGDCRNYEKLVMAKQNKKDHAYY 126
G G+ + P + K +
Sbjct: 103 FEGEKLDNMWDAVGKAAGVT-------SPEELLK------------------------FS 131
Query: 127 SNIVDDPRYASEPSKEEFPMFESLKLTIERTLPYWNNVIVPQLKE-GKKILIAAHGNSLR 185
V D A++P E +L R + + K+ G +L+ HG +
Sbjct: 132 IQEVIDLIRAADP----TKQAEDWELFSTRIKAEIDKISEEAAKDGGGNVLVVVHGLLIT 187
Query: 186 GIVKHLDNMSDE------AIMGLNLPTGIPFV 211
+++ LD+ + ++ + GI V
Sbjct: 188 TLIEMLDSSKTKLGVENASVTKIVYQDGIYTV 219
>3f3k_A Uncharacterized protein YKR043C; structural genomics,, PSI-2, prote
structure initiative; 1.75A {Saccharomyces cerevisiae}
PDB: 3lg2_A 3oi7_A* 3ll4_A*
Length = 265
Score = 167 bits (426), Expect = 4e-52
Identities = 30/218 (13%), Positives = 56/218 (25%), Gaps = 60/218 (27%)
Query: 7 VNEAEAAGVALAKAG-----FKFDVAHTSVLTRAQNTLKAILKGIGQED---LPVHKSWR 58
+ G ++ + TS RA+ T+ +LK + E + V
Sbjct: 37 EGQMLRTGESVFRNNQFLNPDNITYIFTSPRLRARQTVDLVLKPLSDEQRAKIRVVVDDD 96
Query: 59 LNERHYGGLTGLDKAATAA---KYGEEQVLIWRRSFDIPPPAMEKDHTSGDCRNYEKLVM 115
L E YG G+ G ++ W D
Sbjct: 97 LREWEYGDYEGMLTREIIELRKSRGLDKERPWNIWRDGCENG------------------ 138
Query: 116 AKQNKKDHAYYSNIVDDPRYASEPSKEEFPMFESLKLTIERTLPYWNNVIVPQLKEGK-- 173
E +++ + L + R + N+ EG+
Sbjct: 139 ----------------------ETTQQ-------IGLRLSRAIARIQNLHRKHQSEGRAS 169
Query: 174 KILIAAHGNSLRGIVKHLDNMSDEAIMGLNLPTGIPFV 211
I++ AHG++LR + +
Sbjct: 170 DIMVFAHGHALRYFAAIWFGLGVQKKCETIEEIQNVKS 207
>3mbk_A Ubiquitin-associated and SH3 domain-containing PR; PGM, STS-1,
signaling protein, low PH, alternative splicing,
cytoplasm, nucleus, phosphoprotein; 1.35A {Mus musculus}
PDB: 2ikq_A 2h0q_A
Length = 264
Score = 150 bits (380), Expect = 2e-45
Identities = 39/210 (18%), Positives = 61/210 (29%), Gaps = 44/210 (20%)
Query: 7 VNEAEAAGVALAKAGFKFDVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLNERHYGG 66
+A G AL ++ D + S R T ILKG+ Q+ ++
Sbjct: 63 CMQARLVGEALLESNTVIDHVYCSPSLRCVQTAHNILKGLQQD-----NHLKIRVEP--- 114
Query: 67 LTGLDKAATAAKYGEEQVLIWRRSFDIPPPAMEKDHTSGDCRNYEKLVMAKQNKKDHAYY 126
G + W +P + A
Sbjct: 115 -------------GLFEWTKWVAGSTLPAWIPPSEL-------------------AAANL 142
Query: 127 SNIVDDPRYASEPSKEEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRG 186
S D Y + + ES I R+ +I +G ILI AH +SL
Sbjct: 143 SV---DTTYRPHIPVSKLAISESYDTYINRSFQVTKEIISECKSKGNNILIVAHASSLEA 199
Query: 187 IVKHLDNMSDEAIMGL-NLPTGIPFVTQCS 215
L +S + + IP++ CS
Sbjct: 200 CTCQLQGLSPQNSKDFVQMVRKIPYLGFCS 229
>3e9c_A ZGC:56074; histidine phosphatase, hydrolase; 2.00A {Danio rerio}
PDB: 3e9d_A 3e9e_A
Length = 265
Score = 100 bits (251), Expect = 4e-26
Identities = 38/210 (18%), Positives = 61/210 (29%), Gaps = 45/210 (21%)
Query: 7 VNEAEAAGVALAKAGFKFDVAHTSVLTRAQNTLKAILKG-IGQEDLPVHKSWRLNERHYG 65
+A AAG L F S L RA T + IL + + L ER +G
Sbjct: 36 HQQAAAAGRYLK--DLHFTNVFVSNLQRAIQTAEIILGNNLHSSATEMILDPLLRERGFG 93
Query: 66 GLTGLDKAATAAKYGEEQVLIWRRSFDIPPPAMEKDHTSGDCRNYEKLVMAKQNKKDHAY 125
G K + D PP E E++ + +
Sbjct: 94 VAEGRPKEHLKNMANAA----GQSCRDYTPPGGE---------TLEQVK-----TRFKMF 135
Query: 126 YSNIVDDPRYASEPSKEEFPMFESLKLTIERTLPYWNNVIVPQLKE------GKKILIAA 179
++ MFE + + ++ L + L+ +
Sbjct: 136 LKSLFQ-------------RMFEEHGSALSSVPSEADQPVIAGLADDGAQNVPVHALMVS 182
Query: 180 HGNSLRGIVKHLDNMSDEAIMGLNLPTGIP 209
HG +R V+HL + LP G+
Sbjct: 183 HGAFIRISVRHL-----VEDLQCCLPAGLK 207
>2a6p_A Possible phosphoglycerate mutase GPM2; predicted phosphoglycerate
mutase, structural genomics, PSI, structure initiative;
2.20A {Mycobacterium tuberculosis}
Length = 208
Score = 90.0 bits (224), Expect = 1e-22
Identities = 28/199 (14%), Positives = 48/199 (24%), Gaps = 63/199 (31%)
Query: 9 EAEAAGVALAKAGFKFDVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLNERHYGGLT 68
+AE AG L + + S R +T K + + L E YG
Sbjct: 44 QAELAGQLLGELELDDPIVICSPRRRTLDTAKLAGLTVNEVT------GLLAEWDYGSYE 97
Query: 69 GLDKAATAAKYGEEQVLIWRRSFDIPPPAMEKDHTSGDCRNYEKLVMAKQNKKDHAYYSN 128
GL + L+W PA E
Sbjct: 98 GLTTPQIRESEPD--WLVWTH----GCPAGE----------------------------- 122
Query: 129 IVDDPRYASEPSKEEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIV 188
S+ +R + + + +L +HG+ R ++
Sbjct: 123 --------------------SVAQVNDRADSAVALAL--EHMSSRDVLFVSHGHFSRAVI 160
Query: 189 KHLDNMSDEAIMGLNLPTG 207
+ +PT
Sbjct: 161 TRWVQLPLAEGSRFAMPTA 179
>1h2e_A Phosphatase, YHFR; hydrolase, broad specificity phosphatase, DPGM
homolog; 1.69A {Bacillus stearothermophilus} SCOP:
c.60.1.1 PDB: 1h2f_A* 1ebb_A
Length = 207
Score = 82.6 bits (205), Expect = 7e-20
Identities = 28/191 (14%), Positives = 50/191 (26%), Gaps = 56/191 (29%)
Query: 9 EAEAAGVALAKAGFKFDVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLNERHYGGLT 68
+A G L + +TS RA T + + G +P+++ RL E H G
Sbjct: 35 DAMRLGKRLE--AVELAAIYTSTSGRALETAEIVRGGRL---IPIYQDERLREIHLGDWE 89
Query: 69 GLDKAATAAKYGEEQVLIWRRSFDIPPPAMEKDHTSGDCRNYEKLVMAKQNKKDHAYYSN 128
G W+ P E
Sbjct: 90 GKTHDEIRQMDPIAFDHFWQAPHLYAPQRGE----------------------------- 120
Query: 129 IVDDPRYASEPSKEEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIV 188
+R L +++ EG+ +LI HG L+ ++
Sbjct: 121 --------------------RFCDVQQRALEAVQSIV--DRHEGETVLIVTHGVVLKTLM 158
Query: 189 KHLDNMSDEAI 199
+ + +
Sbjct: 159 AAFKDTPLDHL 169
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3
(6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...;
bifunctional enzyme, EDTA complex; HET: F6P EDT ADP;
2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B*
3qpu_A* 3qpv_A* 3qpw_A*
Length = 520
Score = 85.5 bits (211), Expect = 1e-19
Identities = 33/200 (16%), Positives = 53/200 (26%), Gaps = 61/200 (30%)
Query: 8 NEAEAAGVALAKAGFKFDVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLNERHYGGL 67
A A + + K TS L T +A+ LP + LNE G
Sbjct: 277 KFASALSKFVEEQNLKDLRVWTSQLKSTIQTAEAL-------RLPYEQWKALNEIDAGVC 329
Query: 68 TGLDKAATAAKYGEEQVLIWRRSFDIPPPAMEKDHTSGDCRNYEKLVMAKQNKKDHAYYS 127
L Y EE L + + P E
Sbjct: 330 EELTYEEIRDTYPEEYALREQDKYYYRYPTGE---------------------------- 361
Query: 128 NIVDDPRYASEPSKEEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGI 187
S + ++R P +L+ + +L+ H LR +
Sbjct: 362 ---------------------SYQDLVQRLEPVI-----MELERQENVLVICHQAVLRCL 395
Query: 188 VKHLDNMSDEAIMGLNLPTG 207
+ + + S E + L P
Sbjct: 396 LAYFLDKSAEEMPYLKCPLH 415
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase
(phospho), phosphatase, hydrolase (phosp glycolysis,
bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus}
SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A*
1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Length = 469
Score = 80.8 bits (199), Expect = 5e-18
Identities = 26/198 (13%), Positives = 54/198 (27%), Gaps = 61/198 (30%)
Query: 10 AEAAGVALAKAGFKFDVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLNERHYGGLTG 69
++ ++ K TS + R T +A+ +P + LNE G
Sbjct: 282 SKHLAQFISDQNIKDLKVFTSQMKRTIQTAEAL-------SVPYEQFKVLNEIDAGVCEE 334
Query: 70 LDKAATAAKYGEEQVLIWRRSFDIPPPAMEKDHTSGDCRNYEKLVMAKQNKKDHAYYSNI 129
+ Y E L + +
Sbjct: 335 MTYEEIQDHYPLEFALRDQDKYRYR----------------------------------- 359
Query: 130 VDDPRYASEPSKEEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIVK 189
+P ES + ++R P +L+ + +L+ H +R ++
Sbjct: 360 --------------YPKGESYEDLVQRLEPVIM-----ELERQENVLVICHQAVMRCLLA 400
Query: 190 HLDNMSDEAIMGLNLPTG 207
+ + + E + L P
Sbjct: 401 YFLDKAAEELPYLKCPLH 418
>1v37_A Phosphoglycerate mutase; riken structu genomics/proteomics
initiative, RSGI, structural genomics,; 1.40A {Thermus
thermophilus} SCOP: c.60.1.1 PDB: 1v7q_A 2hia_A 2pa0_A
2p2y_A 2p77_A 2p6m_A 2p9y_A 2p30_A 2ekz_A 2p9f_A 2p79_A
2p78_A 2p2z_A 2p75_A 2owe_A 2enu_A 2ekb_A 2p6o_A 2owd_A
2enw_A ...
Length = 177
Score = 76.5 bits (189), Expect = 8e-18
Identities = 31/206 (15%), Positives = 51/206 (24%), Gaps = 75/206 (36%)
Query: 9 EAEAAGVALAKAGFKFDVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLNERHYGGLT 68
+A AL A +S L RA+ T + L E H+G L
Sbjct: 34 QARRLKGALP-----SLPAFSSDLLRARRTAELA-------GFSPRLYPELREIHFGALE 81
Query: 69 GLDKAATAAKYGEEQVLIWRRSFDIPPPAMEKDHTSGDCRNYEKLVMAKQNKKDHAYYSN 128
G +Y E R PP E
Sbjct: 82 GALWETLDPRYKEA----LLRFQGFHPPGGE----------------------------- 108
Query: 129 IVDDPRYASEPSKEEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRGIV 188
SL ER + + P ++ HG +R ++
Sbjct: 109 --------------------SLSAFQERVFRFLEGLKAP-------AVLFTHGGVVRAVL 141
Query: 189 KHLDN---MSDEAIMGLNLPTGIPFV 211
+ L + + + ++ P +
Sbjct: 142 RALGEDGLVPPGSAVAVDWPRRVLVR 167
>3c7t_A Ecdysteroid-phosphate phosphatase; ecdysone, 2H-phosphatase, PGM,
hydrolase; 1.76A {Bombyx mori}
Length = 263
Score = 77.1 bits (189), Expect = 2e-17
Identities = 27/212 (12%), Positives = 57/212 (26%), Gaps = 50/212 (23%)
Query: 7 VNEAEAAGVALAKAGFKFDVAHTSVLTRAQNTLKAILKGIGQE-DLPVHKSWRLNERHYG 65
+A+ G + AG + S R T + L G+ + + + L E
Sbjct: 65 WFQAQLVGEGMRMAGVSIKHVYASPALRCVETAQGFLDGLRADPSVKIKVEPGLFEFKNW 124
Query: 66 GLTGLDKAATAAKYGEEQVLIWRRSFDIPPPAMEKDHTSGDCRNYEKLVMAKQNKKDHAY 125
+ T + + + +
Sbjct: 125 HMPKGIDFMTPIELCKAGLNV--------------------------------------- 145
Query: 126 YSNIVDDPRYASEPSKEEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLR 185
D Y +P E E++ +R + K+G ++ H +L
Sbjct: 146 ------DMTY--KPYVEMDASAETMDEFFKRGEVAMQAAVNDTEKDGGNVIFIGHAITLD 197
Query: 186 GIVKHLDNMSDEA--IMGLNLPTGIPFVTQCS 215
+V L + D+ + + + V C+
Sbjct: 198 QMVGALHRLRDDMEDVQPYEIGRNLLKVPYCA 229
>3d4i_A STS-2 protein; PGM, 2H-phosphatase, PTP, SH3 domain, hydrolase;
1.95A {Mus musculus} PDB: 3d6a_A 3db1_A
Length = 273
Score = 72.5 bits (177), Expect = 1e-15
Identities = 33/193 (17%), Positives = 53/193 (27%), Gaps = 43/193 (22%)
Query: 7 VNEAEAAGVALAKAGFKFDVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLNERHYGG 66
+ +A AG AL +G + S R T K IL+ + E
Sbjct: 72 IFQARLAGEALLDSGVRVTAVFASPALRCVQTAKHILEELKLEK---------------- 115
Query: 67 LTGLDKAATAAKYGEEQVLIWRRSFDIPPPAMEKDHTSGDCRNYEKLVMAKQNKKDHAYY 126
K + G + + W S E+L A N
Sbjct: 116 -----KLKIRVEPGIFEWMKWEASKATLTFL-----------TLEELKEANFN------- 152
Query: 127 SNIVDDPRYASEPSKEEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRG 186
D Y + ES +ER +I ++ LI +H ++L
Sbjct: 153 ----VDLDYRPALPRCSLMPAESYDQYVERCAVSMGQIINTCPQDMGITLIVSHSSALDS 208
Query: 187 IVKHLDNMSDEAI 199
+ L +
Sbjct: 209 CTRPLLGLPPREC 221
>3hjg_A Putative alpha-ribazole-5'-phosphate phosphatase COBC; PSI-2,
NYSGXRC, structural genomics, protein structure
initiative; 2.80A {Vibrio parahaemolyticus}
Length = 213
Score = 56.5 bits (137), Expect = 3e-10
Identities = 14/89 (15%), Positives = 29/89 (32%), Gaps = 4/89 (4%)
Query: 11 EAAGVALAKAGFKFDVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLNERHYGGLTGL 70
+ +A G+ +S L+R + + + + LP+ L E +G G+
Sbjct: 36 QQIAMAWKTKGYDVAGIISSPLSRCHDLAQILAEQQL---LPMTTEDDLQEMDFGDFDGM 92
Query: 71 DKAATAAKYGEEQVLIWRRSFDIPPPAME 99
+ + W+ P E
Sbjct: 93 PFDLLTEHWKKLDAF-WQSPAHHSLPNAE 120
>3mxo_A Serine/threonine-protein phosphatase PGAM5, mitoc;
phosphoglycerate mutase family member 5, BXLBV68, MGC
protein, structural genomics consortium; HET: PG4 PGE
PEG; 1.70A {Homo sapiens} PDB: 3o0t_A
Length = 202
Score = 49.0 bits (117), Expect = 1e-07
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Query: 10 AEAAGVALAKAGFKFDVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLNERHYG 65
AE G+ LA G KF+ S +TRA T I + + + + L E
Sbjct: 41 AELTGLRLASLGLKFNKIVHSSMTRAIETTDIISRHLP--GVCKVSTDLLREGAPI 94
>3eoz_A Putative phosphoglycerate mutase; PGAM, malaria, structural
genomics, isomerase, structural GE consortium, SGC;
2.40A {Plasmodium falciparum}
Length = 214
Score = 46.3 bits (110), Expect = 1e-06
Identities = 16/67 (23%), Positives = 23/67 (34%), Gaps = 4/67 (5%)
Query: 10 AEAAGVALAK--AGFKFDVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLNERHYGGL 67
A+ G L K V + S + RA+ T I K D + LNE
Sbjct: 53 ADITGKKLKDILNNKKVSVIYHSDMIRAKETANIISKYFP--DANLINDPNLNEGTPYLP 110
Query: 68 TGLDKAA 74
L + +
Sbjct: 111 DPLPRHS 117
Score = 32.0 bits (73), Expect = 0.090
Identities = 13/79 (16%), Positives = 25/79 (31%), Gaps = 2/79 (2%)
Query: 132 DPRYASEPSKEEFPMFESLKLTIERTLPYWNNVI-VPQLKEGKKILIAAHGNSLRGIVKH 190
P + + +K +R + P E + L+ HGN +R +
Sbjct: 106 TPYLPDPLPRHSKFDAQKIKEDNKRINKAYETYFYKPSGDEDEYQLVICHGNVIRYFLCR 165
Query: 191 LDNMSDEAIMGLNL-PTGI 208
+ A + + GI
Sbjct: 166 ALQIPLFAWLRFSSYNCGI 184
>2rfl_A Putative phosphohistidine phosphatase SIXA; alpha-beta-alpha
sandwich, structural genomics, PSI-2, prote structure
initiative; 2.35A {Agrobacterium tumefaciens str}
Length = 173
Score = 41.6 bits (98), Expect = 4e-05
Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 6/55 (10%)
Query: 1 MDDFDR------VNEAEAAGVALAKAGFKFDVAHTSVLTRAQNTLKAILKGIGQE 49
DFDR EAE A ++ D+ +S R + T +A + +
Sbjct: 26 ERDFDRGLNEAGFAEAEIIADLAADRRYRPDLILSSTAARCRQTTQAWQRAFNEG 80
>2qni_A AGR_C_517P, uncharacterized protein ATU0299; MCSG, in SITU
proteolysis, structural genomics, PSI protein structure
initiative; 1.80A {Agrobacterium tumefaciens str}
Length = 219
Score = 41.4 bits (97), Expect = 6e-05
Identities = 9/91 (9%), Positives = 19/91 (20%), Gaps = 8/91 (8%)
Query: 9 EAEAAGVALAKAGFKFDVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLNERHYGGLT 68
A + +S T+A T + + G + ++E
Sbjct: 50 AERAREASRLPWAKALRRIVSSAETKAIETAHMLAETSG---AAIEIIEAMHENDRSATG 106
Query: 69 GLDKAATAAKYGEEQVLIWRRSFDIPPPAME 99
L + + E
Sbjct: 107 FLPPPEFEKAADW-----FFAHPEESFQGWE 132
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.6 bits (97), Expect = 1e-04
Identities = 52/309 (16%), Positives = 87/309 (28%), Gaps = 124/309 (40%)
Query: 16 ALAKAGFKFDVAHTSVLTRAQNTLKAILKGI--GQ-------EDL-PVHKSWR-----LN 60
A A FD S L RA A L I GQ E+L +++++ L
Sbjct: 129 ARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLI 188
Query: 61 ERHYGGLTGLDKAATAAK--YGEE-QVLIW-RRSFDIPP--------------------- 95
+ L+ L + A+ + + +L W + P
Sbjct: 189 KFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAH 248
Query: 96 -----------PAMEKDHTSGDCRNYEKLVMAK---QNKKDHAYYSNIVDD--------- 132
P + + G + + LV A + +++ ++
Sbjct: 249 YVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGV 308
Query: 133 ------PRYASEPSKEEF----------PMF-------ESLKLTIERTLPYWNNVIVPQL 169
P + PS E PM E ++ + +T N +P
Sbjct: 309 RCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKT-----NSHLP-- 361
Query: 170 KEGKKILIAAH---------GN--SLRGIVKHLDNMSDEAIMGLN--------------- 203
GK++ I+ G SL G+ L A GL+
Sbjct: 362 -AGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAK--APSGLDQSRIPFSERKLKFSN 418
Query: 204 --LPTGIPF 210
LP PF
Sbjct: 419 RFLPVASPF 427
>3f2i_A ALR0221 protein; alpha-beta protein, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium, NESG, function; 2.00A {Nostoc SP}
Length = 172
Score = 38.4 bits (90), Expect = 5e-04
Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 6/60 (10%)
Query: 1 MDDFDR------VNEAEAAGVALAKAGFKFDVAHTSVLTRAQNTLKAILKGIGQEDLPVH 54
+ D +R + E L K G +FD+ TS L RA+ T + +L L
Sbjct: 18 IKDEERELTQEGKQKTEKVAYRLVKLGRQFDLIVTSPLIRARQTAEILLASGLSCQLEES 77
>1ujc_A Phosphohistidine phosphatase SIXA; alpha-beta fold, hydrolase;
1.90A {Escherichia coli} PDB: 1ujb_A
Length = 161
Score = 38.1 bits (89), Expect = 5e-04
Identities = 12/71 (16%), Positives = 20/71 (28%), Gaps = 10/71 (14%)
Query: 2 DDFDR------VNEAEAAGVALAKAGFKFDVAHTSVLTRAQNTLKAILKGIGQEDLPVHK 55
D R +E+ L + + S RA+ TL+ + +
Sbjct: 17 SDSVRPLTTNGCDESRLMANWLKGQKVEIERVLVSPFLRAEQTLEEVGDCLNLPSSAEV- 75
Query: 56 SWRLNERHYGG 66
L E G
Sbjct: 76 ---LPELTPCG 83
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed
with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A
{Saccharomyces cerevisiae}
Length = 479
Score = 27.9 bits (63), Expect = 2.8
Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
Query: 69 GLDKAATAAKYGEEQVLIWRRSFDIPPPAMEKDHTSGDCRNYEKLVMAKQNKK 121
G+ + KYG+E + ++ F AM S K+V A N+K
Sbjct: 374 GISEKEAIEKYGKENIKVYNSKF----TAMYYAMLSEKSPTRYKIVCAGPNEK 422
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide,
acetylation, alternative initiation, cytoplasm, FAD,
flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A
{Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A*
1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A*
3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A*
1xan_A* 5grt_A* ...
Length = 478
Score = 26.7 bits (60), Expect = 6.3
Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 69 GLDKAATAAKYGEEQVLIWRRSFDIPPPAMEKDHTSGDCRNYEKLVMAKQNKK 121
GL + KYG E V + SF M T + K+V A + +K
Sbjct: 381 GLTEDEAIHKYGIENVKTYSTSFT----PMYHAVTKRKTKCVMKMVCANKEEK 429
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A
{Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1geu_A* 1ger_A* 1get_A*
Length = 450
Score = 26.7 bits (60), Expect = 6.3
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 69 GLDKAATAAKYGEEQVLIWRRSFDIPPPAMEKDHTSGDCRNYEKLVMAKQNKK 121
GL + +YG++QV +++ SF AM T+ KLV +K
Sbjct: 353 GLTEPQAREQYGDDQVKVYKSSFT----AMYTAVTTHRQPCRMKLVCVGSEEK 401
>2ogj_A Dihydroorotase; TIM barrel, binuclear zinc, imidazole complex,
amido hydrola 9244B, structural genomics, PSI-2; HET:
KCX; 2.62A {Agrobacterium tumefaciens}
Length = 417
Score = 26.6 bits (58), Expect = 6.6
Identities = 10/82 (12%), Positives = 19/82 (23%)
Query: 4 FDRVNEAEAAGVALAKAGFKFDVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLNERH 63
+ A G + D+ H + AI +G+ +
Sbjct: 241 IMEDEDLFNLAERCAGEGIRLDIGHGGASFSFKVAEAAIARGLLPFSISTDLHGHSMNFP 300
Query: 64 YGGLTGLDKAATAAKYGEEQVL 85
L + E V+
Sbjct: 301 VWDLATTMSKLLSVDMPFENVV 322
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.134 0.397
Gapped
Lambda K H
0.267 0.0787 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,439,571
Number of extensions: 205983
Number of successful extensions: 589
Number of sequences better than 10.0: 1
Number of HSP's gapped: 552
Number of HSP's successfully gapped: 54
Length of query: 215
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 125
Effective length of database: 4,188,903
Effective search space: 523612875
Effective search space used: 523612875
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (24.9 bits)