RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11845
(215 letters)
>d1e58a_ c.60.1.1 (A:) Phosphoglycerate mutase {Escherichia coli
[TaxId: 562]}
Length = 247
Score = 125 bits (314), Expect = 4e-36
Identities = 98/205 (47%), Positives = 132/205 (64%), Gaps = 24/205 (11%)
Query: 7 VNEAEAAGVALAKAGFKFDVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLNERHYGG 66
V+EA+AAG L + G+ FD A+TSVL RA +TL +L + Q LPV KSW+LNERHYG
Sbjct: 34 VSEAKAAGKLLKEEGYSFDFAYTSVLKRAIHTLWNVLDELDQAWLPVEKSWKLNERHYGA 93
Query: 67 LTGLDKAATAAKYGEEQVLIWRRSFDIPPPAMEKDHTSGDCRNYEKLVMAKQNKKDHAYY 126
L GL+KA TA KYG+EQV WRR F + PP + KD +
Sbjct: 94 LQGLNKAETAEKYGDEQVKQWRRGFAVTPPELTKDDERYPGHDPRY-------------- 139
Query: 127 SNIVDDPRYASEPSKEEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRG 186
++ S++E P+ ESL LTI+R +PYWN I+P++K G++++IAAHGNSLR
Sbjct: 140 ----------AKLSEKELPLTESLALTIDRVIPYWNETILPRMKSGERVIIAAHGNSLRA 189
Query: 187 IVKHLDNMSDEAIMGLNLPTGIPFV 211
+VK+LDNMS+E I+ LN+PTG+P V
Sbjct: 190 LVKYLDNMSEEEILELNIPTGVPLV 214
>d2hhja1 c.60.1.1 (A:3-250) Phosphoglycerate mutase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 248
Score = 110 bits (275), Expect = 2e-30
Identities = 90/206 (43%), Positives = 123/206 (59%), Gaps = 22/206 (10%)
Query: 7 VNEAEAAGVALAKAGFKFDVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLNERHYGG 66
+ EA G L F+FD+ TSVL R+ +T IL+ +GQE +PV SWRLNERHYG
Sbjct: 33 MEEARNCGKQLKALNFEFDLVFTSVLNRSIHTAWLILEELGQEWVPVESSWRLNERHYGA 92
Query: 67 LTGLDKAATAAKYGEEQVLIWRRSFDIPPPAMEKDHTSGDCRNYEKLVMAKQNKKDHAYY 126
L GL++ A +GEEQV +WRRS+++ PP +E+ H YY
Sbjct: 93 LIGLNREQMALNHGEEQVRLWRRSYNVTPPPIEESH---------------------PYY 131
Query: 127 SNIVDDPRY-ASEPSKEEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLR 185
I +D RY + ++ P ESLK +ER LPYWN I P++ GK ILI+AHGNS R
Sbjct: 132 QEIYNDRRYKVCDVPLDQLPRSESLKDVLERLLPYWNERIAPEVLRGKTILISAHGNSSR 191
Query: 186 GIVKHLDNMSDEAIMGLNLPTGIPFV 211
++KHL+ +SDE I+ + LPTG+P +
Sbjct: 192 ALLKHLEGISDEDIINITLPTGVPIL 217
>d1xq9a_ c.60.1.1 (A:) Phosphoglycerate mutase {Plasmodium
falciparum [TaxId: 5833]}
Length = 241
Score = 106 bits (265), Expect = 6e-29
Identities = 97/205 (47%), Positives = 128/205 (62%), Gaps = 24/205 (11%)
Query: 7 VNEAEAAGVALAKAGFKFDVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLNERHYGG 66
EA AAG L + FKFDV +TSVL RA T +LK +PV K+WRLNERHYG
Sbjct: 35 EEEAIAAGKYLKEKNFKFDVVYTSVLKRAICTAWNVLKTADLLHVPVVKTWRLNERHYGS 94
Query: 67 LTGLDKAATAAKYGEEQVLIWRRSFDIPPPAMEKDHTSGDCRNYEKLVMAKQNKKDHAYY 126
L GL+K+ TA KYGEEQV IWRRS+DIPPP ++K+ D+ +
Sbjct: 95 LQGLNKSETAKKYGEEQVKIWRRSYDIPPPKLDKE--------------------DNRWP 134
Query: 127 SNIVDDPRYASEPSKEEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRG 186
+ + Y + P K+ P E LK T+ER LP+W + I P + KK+++AAHGNSLRG
Sbjct: 135 GH---NVVYKNVP-KDALPFTECLKDTVERVLPFWFDHIAPDILANKKVMVAAHGNSLRG 190
Query: 187 IVKHLDNMSDEAIMGLNLPTGIPFV 211
+VKHLDN+S+ ++ LN+PTG+P V
Sbjct: 191 LVKHLDNLSEADVLELNIPTGVPLV 215
>d1qhfa_ c.60.1.1 (A:) Phosphoglycerate mutase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 240
Score = 102 bits (254), Expect = 2e-27
Identities = 85/205 (41%), Positives = 107/205 (52%), Gaps = 24/205 (11%)
Query: 7 VNEAEAAGVALAKAGFKFDVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLNERHYGG 66
EA AG L + DV +TS L+RA T L+ + +PV++SWRLNERHYG
Sbjct: 32 QQEAARAGELLKEKKVYPDVLYTSKLSRAIQTANIALEKADRLWIPVNRSWRLNERHYGD 91
Query: 67 LTGLDKAATAAKYGEEQVLIWRRSFDIPPPAMEKDHTSGDCRNYEKLVMAKQNKKDHAYY 126
L G DKA T K+GEE+ +RRSFD+PPP ++
Sbjct: 92 LQGKDKAETLKKFGEEKFNTYRRSFDVPPPPIDASS--------------------PFSQ 131
Query: 127 SNIVDDPRYASEPSKEEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRG 186
P ESL L I+R LPYW +VI L GK ++IAAHGNSLRG
Sbjct: 132 KGDERYKYV----DPNVLPETESLALVIDRLLPYWQDVIAKDLLSGKTVMIAAHGNSLRG 187
Query: 187 IVKHLDNMSDEAIMGLNLPTGIPFV 211
+VKHL+ +SD I LN+PTGIP V
Sbjct: 188 LVKHLEGISDADIAKLNIPTGIPLV 212
>d1riia_ c.60.1.1 (A:) Phosphoglycerate mutase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 243
Score = 92.0 bits (227), Expect = 2e-23
Identities = 84/205 (40%), Positives = 106/205 (51%), Gaps = 26/205 (12%)
Query: 7 VNEAEAAGVALAKAGFKFDVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLNERHYGG 66
EA +G +A+ DV +TS+L RA T L + +PV +SWRLNERHYG
Sbjct: 35 QAEAVRSGELIAEHDLLPDVLYTSLLRRAITTAHLALDSADRLWIPVRRSWRLNERHYGA 94
Query: 67 LTGLDKAATAAKYGEEQVLIWRRSFDIPPPAMEKDHTSGDCRNYEKLVMAKQNKKDHAYY 126
L GLDKA T A+YGEEQ + WRRS+D PPP + +
Sbjct: 95 LQGLDKAETKARYGEEQFMAWRRSYDTPPPPI--------------------ERGSQFSQ 134
Query: 127 SNIVDDPRYASEPSKEEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRG 186
P E + R LPY+ +VIV L+ GK +LI AHGNSLR
Sbjct: 135 DADPRYADIGGGPLTECLAD------VVARFLPYFTDVIVGDLRVGKTVLIVAHGNSLRA 188
Query: 187 IVKHLDNMSDEAIMGLNLPTGIPFV 211
+VKHLD MSD+ I+GLN+PTGIP
Sbjct: 189 LVKHLDQMSDDEIVGLNIPTGIPLR 213
>d1fzta_ c.60.1.1 (A:) Phosphoglycerate mutase {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 211
Score = 85.0 bits (209), Expect = 4e-21
Identities = 78/205 (38%), Positives = 106/205 (51%), Gaps = 49/205 (23%)
Query: 7 VNEAEAAGVALAKAGFKFDVAHTSVLTRAQNTLKAILKGIGQEDLPVHKSWRLNERHYGG 66
+ EA+ G L G+KFD+A TS L RAQ T + IL+ +G+ +L KS +LNER+YG
Sbjct: 39 IKEAKLGGERLKSRGYKFDIAFTSALQRAQKTCQIILEEVGEPNLETIKSEKLNERYYGD 98
Query: 67 LTGLDKAATAAKYGEEQVLIWRRSFDIPPPAMEKDHTSGDCRNYEKLVMAKQNKKDHAYY 126
L GL+K K+G EQV IWRRS+DI PP
Sbjct: 99 LQGLNKDDARKKWGAEQVQIWRRSYDIAPPN----------------------------- 129
Query: 127 SNIVDDPRYASEPSKEEFPMFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNSLRG 186
ESLK T ER LPY+ + IVP + +G+K+LIAAHGNSLR
Sbjct: 130 --------------------GESLKDTAERVLPYYKSTIVPHILKGEKVLIAAHGNSLRA 169
Query: 187 IVKHLDNMSDEAIMGLNLPTGIPFV 211
++ L+ ++ + I+ L TG+P V
Sbjct: 170 LIMDLEGLTGDQIVKRELATGVPIV 194
>d1bifa2 c.60.1.4 (A:250-468)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
phosphatase domain {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 219
Score = 49.9 bits (118), Expect = 3e-08
Identities = 23/166 (13%), Positives = 56/166 (33%), Gaps = 16/166 (9%)
Query: 56 SWRLNERHYG--GLT--GLDKAATAAKYGEEQVLIWRRSFDIPPPAMEKDHTSGDCRNYE 111
L R G GL+ G + + A++ +Q + + F + + +
Sbjct: 11 ELNLKGRIGGDPGLSPRGREFSKHLAQFISDQNIKDLKVFTSQMKRTIQTAEALSVPYEQ 70
Query: 112 KLVMAKQNKKDHAYYSNIVDDPRYA-------SEPSKEEFPMFESLKLTIERTLPYWNNV 164
V+ + + + Y + + +P ES + ++R P
Sbjct: 71 FKVLNEIDAGVCEEMTYEEIQDHYPLEFALRDQDKYRYRYPKGESYEDLVQRLEPVIM-- 128
Query: 165 IVPQLKEGKKILIAAHGNSLRGIVKHLDNMSDEAIMGLNLPTGIPF 210
+L+ + +L+ H +R ++ + + + E + L P
Sbjct: 129 ---ELERQENVLVICHQAVMRCLLAYFLDKAAEELPYLKCPLHTVL 171
>d1v37a_ c.60.1.1 (A:) Alpha-ribazole-5'-phosphate phosphatase
{Thermus thermophilus [TaxId: 274]}
Length = 171
Score = 38.9 bits (89), Expect = 1e-04
Identities = 6/57 (10%), Positives = 21/57 (36%), Gaps = 4/57 (7%)
Query: 159 PYWNNVIVPQLKE-GKKILIAAHGNSLRGIVKHLDN---MSDEAIMGLNLPTGIPFV 211
+ + L+ ++ HG +R +++ L + + + ++ P +
Sbjct: 111 SAFQERVFRFLEGLKAPAVLFTHGGVVRAVLRALGEDGLVPPGSAVAVDWPRRVLVR 167
>d1h2ea_ c.60.1.1 (A:) Broad specificity phosphatase PhoE (YhfR)
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 207
Score = 32.7 bits (73), Expect = 0.021
Identities = 20/167 (11%), Positives = 42/167 (25%), Gaps = 19/167 (11%)
Query: 57 WRLNERHYG----GLTGLDKAATAAKYGEEQVLIWRRSFDIPPPAMEKDHTSGDCRNYEK 112
W + R G LT + A + G+ + + +
Sbjct: 14 WNVERRMQGWQDSPLTEKGRQD-AMRLGKRLEAVELAAIYTSTSGRALETAEIVRGGRLI 72
Query: 113 LVMAK------------QNKKDHAYYSNIVDDPRYASEPSKEEFPMFESLKLTIERTLPY 160
+ D + + + P E +R L
Sbjct: 73 PIYQDERLREIHLGDWEGKTHDEIRQMDPIAFDHFWQAPHLYAPQRGERFCDVQQRALEA 132
Query: 161 WNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMSDEAIMGLNLPTG 207
++ EG+ +LI HG L+ ++ + + + G
Sbjct: 133 VQSI--VDRHEGETVLIVTHGVVLKTLMAAFKDTPLDHLWSPPYMYG 177
>d2d32a1 d.128.1.4 (A:1-518) Gamma-glutamylcysteine synthetase GshA
{Escherichia coli [TaxId: 562]}
Length = 518
Score = 26.9 bits (59), Expect = 2.2
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 161 WNNVIVPQLKEGKKILIAAHGNSLRGIVKHLDNMSDEAIMG--LNLPTGIPF 210
W + + EG+ I +A +G S G K L + G + +G+ +
Sbjct: 100 WPLSMPSYIAEGQDIELAQYGTSNTGRFKTLYREGLKNRYGALMQTISGVHY 151
>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 223
Score = 26.0 bits (56), Expect = 3.1
Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 12/46 (26%)
Query: 65 GGLTGLDKAATAAKYGEEQVLIWRRSFDIPPPAMEKDHTSGDCRNY 110
G G A AA+ G++ ++ EK + G C N
Sbjct: 11 AGPGGYVAAIRAAQLGQKVTIV------------EKGNLGGVCLNV 44
>d2a1ba1 d.58.56.1 (A:2-102) Carboxysome shell protein CcmK2
{Synechocystis sp. PCC 6803 [TaxId: 1148]}
Length = 101
Score = 24.3 bits (53), Expect = 6.1
Identities = 10/43 (23%), Positives = 18/43 (41%)
Query: 7 VNEAEAAGVALAKAGFKFDVAHTSVLTRAQNTLKAILKGIGQE 49
V + +AG+ A +V T ++ R L+ +L E
Sbjct: 52 VQASVSAGIEAANRVNGGEVLSTHIIARPHENLEYVLPIRYTE 94
>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 288
Score = 25.5 bits (54), Expect = 6.2
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 65 GGLTGLDKAATAAKYGEEQVLIWRRSFDIPP 95
G+ GL A + G +V + S +I P
Sbjct: 9 AGIGGLSCALALHQAGIGKVTLLESSSEIRP 39
>d1x92a_ c.80.1.3 (A:) Phosphoheptose isomerase GmhA1 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 194
Score = 25.1 bits (54), Expect = 6.4
Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
Query: 146 MFESLKLTIERTLPYWNNVIVPQLKEGKKILIAAHGNS 183
E L IE+ + V+V L KIL +G S
Sbjct: 20 ALEVLPPYIEQ----ASLVMVNALLNEGKILSCGNGGS 53
>d2a10a1 d.58.56.1 (A:4-107) Carboxysome shell protein CcmK4
{Synechocystis sp. PCC 6803 [TaxId: 1148]}
Length = 104
Score = 23.9 bits (52), Expect = 8.3
Identities = 10/44 (22%), Positives = 16/44 (36%)
Query: 7 VNEAEAAGVALAKAGFKFDVAHTSVLTRAQNTLKAILKGIGQED 50
V A AAG+ DV ++ R + A+L +
Sbjct: 52 VKTAMAAGIDAINRTEGADVKTWVIIPRPHENVVAVLPIDFSPE 95
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.134 0.397
Gapped
Lambda K H
0.267 0.0396 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 821,946
Number of extensions: 38099
Number of successful extensions: 133
Number of sequences better than 10.0: 1
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 20
Length of query: 215
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 133
Effective length of database: 1,281,736
Effective search space: 170470888
Effective search space used: 170470888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)