Query psy11848
Match_columns 184
No_of_seqs 153 out of 1204
Neff 7.5
Searched_HMMs 46136
Date Fri Aug 16 20:28:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11848.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11848hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3071|consensus 100.0 1.9E-44 4.2E-49 297.1 8.3 177 3-184 17-212 (274)
2 PF01151 ELO: GNS1/SUR4 family 100.0 6E-43 1.3E-47 288.1 8.7 168 11-184 1-190 (250)
3 PTZ00251 fatty acid elongase; 100.0 4E-42 8.7E-47 285.3 4.3 170 5-184 14-210 (272)
4 KOG3072|consensus 100.0 1.5E-34 3.2E-39 237.0 4.3 168 5-184 28-216 (282)
5 COG5548 Small integral membran 58.1 8.9 0.00019 27.1 2.1 25 21-46 58-82 (105)
6 PF11694 DUF3290: Protein of u 22.9 1.6E+02 0.0034 22.5 4.1 43 20-63 20-62 (149)
7 PF04835 Pox_A9: A9 protein co 20.8 57 0.0012 20.5 1.1 11 145-155 3-13 (54)
8 PF06210 DUF1003: Protein of u 19.4 3.5E+02 0.0076 19.3 6.5 55 15-72 2-56 (108)
9 MTH00169 ATP8 ATP synthase F0 17.3 1.7E+02 0.0036 19.2 2.8 25 16-40 13-37 (67)
10 PF15110 TMEM141: TMEM141 prot 17.0 3.5E+02 0.0075 19.0 4.4 29 33-66 43-71 (94)
No 1
>KOG3071|consensus
Probab=100.00 E-value=1.9e-44 Score=297.09 Aligned_cols=177 Identities=40% Similarity=0.663 Sum_probs=157.3
Q ss_pred CCCcccccccCcCCchHHHHHHHHHHHHHHHhhhhhhcCCCCCccchhhhhhhHHHHHHHHHHHHHHHHHhhh-cceeee
Q psy11848 3 YIDPRVNDWFLMESPIPTLVMVGIYLYIVVFLGPWIMANRKPFKLKTVLIVYNAAQVIFSLAMLWEHLMSGWL-LDYSYK 81 (184)
Q Consensus 3 ~~d~~~~~w~l~~~~~~~~~~~~~Yl~~v~~~~~~~M~~R~p~~l~~~~~~~N~~l~~~s~~~~~~~~~~~~~-~~~~~~ 81 (184)
.+|++++ ||++++|.++..++.+|+ +|+..||++||||||++||.++.+||+.|++.|++++.+.....+. +.+++.
T Consensus 17 ~~~~~v~-~~~l~s~~~~~~il~~yl-~v~~~G~~~m~nrkp~~l~~~~~vyN~~~vl~s~~i~~~~~~~~~~~~~y~l~ 94 (274)
T KOG3071|consen 17 SPDDRVR-SPLLSSPWPLLSILLAYL-FVLKLGPKLMRNRKPLKLRGLSQVYNLGQVLLSAAIFLEGELWRWLKTAYNLR 94 (274)
T ss_pred CCCcccc-chhccCcHHHHHHHHHHH-HHHHhcHhhhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccceE
Confidence 4567777 899999999999999999 6659999999999999999999999999999999977766655554 479999
Q ss_pred ecccCCCCCccceeeeeEEEeeeee--------------ccccccc----ccCchhhhhhhhheeeeccccCCCchhhhh
Q psy11848 82 CQPVDYSHNPTALRHLMSGWLLDYS--------------YKCQPVD----YSHNPTALRVSFWVIIECFNQGGHGTFSNL 143 (184)
Q Consensus 82 C~~~~~~~~~~~~~~~~~~~~~~~s--------------~k~~~vs----YHH~~~~l~~~~w~~~~k~~~~~~~~~~~~ 143 (184)
|++++.++.+...+...++|++++| ||.+|++ |||..|+. .+|..+ ++.++|+.++.+.
T Consensus 95 c~~~~~~~~~~~~r~~~~~~~yylsKflel~DTvFfVLRKk~rqlsFLHvyHH~~m~~--~~~~~l-~~~~~g~~~~~~~ 171 (274)
T KOG3071|consen 95 CQPCFPSDHEPKLRERFWSYLYYLSKFLELLDTVFFVLRKKDRQLSFLHVYHHGVMAF--LSYLWL-KFYGGGHGFFAIL 171 (274)
T ss_pred EEecCCCCCCcceeehHHHHHHHHHHHHHHHhheeeEEEccCCceEEEEEEecchHHH--hhhhee-EEeCCceeeeeee
Confidence 9998877666666677777766555 7779999 99999999 999999 9988899999999
Q ss_pred hhhhHHHHHHHHHHHHhhCCCccccchhhHhhhhhhhccCC
Q psy11848 144 INNIVHVIMYFYYMVSAMGPEYQKYLWWKRHLTTLTVPSLT 184 (184)
Q Consensus 144 ~Ns~VH~iMY~YY~l~a~g~~~~~~~~~k~~iT~~Qi~Qf~ 184 (184)
+|++||++||+||+++|+|+|+++++|||+++|.+|++||+
T Consensus 172 lNs~VHviMY~YYflsa~G~~v~~~lWWkky~t~vQlvqf~ 212 (274)
T KOG3071|consen 172 LNSFVHVIMYGYYFLSAFGPRVQWYLWWKKYITIVQLVQFL 212 (274)
T ss_pred hhhhHHHHHHHHHHHHhhCcCccccchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999984
No 2
>PF01151 ELO: GNS1/SUR4 family; InterPro: IPR002076 This group of eukaryotic integral membrane proteins are evolutionary related, but exact function has not yet clearly been established. The proteins have from 290 to 435 amino acid residues. Structurally, they seem to be formed of three sections: a N-terminal region with two transmembrane domains, a central hydrophilic loop and a C-terminal region that contains from one to three transmembrane domains. Members of this family are involved in long chain fatty acid elongation systems that produce the 26-carbon precursors for ceramide and sphingolipid synthesis []. Predicted to be integral membrane proteins, in eukaryotes they are probably located on the endoplasmic reticulum. Yeast ELO3 (P40319 from SWISSPROT) affects plasma membrane H+-ATPase activity, and may act on a glucose-signalling pathway that controls the expression of several genes that are transcriptionally regulated by glucose such as PMA1 []. ; GO: 0016021 integral to membrane
Probab=100.00 E-value=6e-43 Score=288.05 Aligned_cols=168 Identities=38% Similarity=0.679 Sum_probs=140.7
Q ss_pred ccCcCCchHHHHHHHHHHHHHHHhhhhhhcCCCCCccchhhhhhhHHHHHHHHHHHHHHHHHhh-----hcceeeeeccc
Q psy11848 11 WFLMESPIPTLVMVGIYLYIVVFLGPWIMANRKPFKLKTVLIVYNAAQVIFSLAMLWEHLMSGW-----LLDYSYKCQPV 85 (184)
Q Consensus 11 w~l~~~~~~~~~~~~~Yl~~v~~~~~~~M~~R~p~~l~~~~~~~N~~l~~~s~~~~~~~~~~~~-----~~~~~~~C~~~ 85 (184)
|++ +||++++.++++|+++| +.||++||||||++||+++.+||++|+++|+++++++++... .|.++..|++.
T Consensus 1 Wl~-~~~~~~~~~~~~Yl~~V-~~g~~~m~~Rkp~~Lk~~~~~~N~~l~~~S~~~~~~~~~~~~~~~~~~g~~~~~C~~~ 78 (250)
T PF01151_consen 1 WLM-SNPWFPILIVVLYLLFV-FLGPRFMKNRKPFNLKTLIIVYNLFLVVFSAYMFYGILPALFSSLFKGGLYSSFCQPV 78 (250)
T ss_pred Ccc-cCCHHHHHHHHHHHHHH-HHHHHHHhhCCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccc
Confidence 665 89999999999999999 999999999999999999999999999999999999996532 25688999644
Q ss_pred CCCC-CccceeeeeEEEeeeee------------ccccccc----ccCchhhhhhhhheeeeccccCCCchhhhhhhhhH
Q psy11848 86 DYSH-NPTALRHLMSGWLLDYS------------YKCQPVD----YSHNPTALRVSFWVIIECFNQGGHGTFSNLINNIV 148 (184)
Q Consensus 86 ~~~~-~~~~~~~~~~~~~~~~s------------~k~~~vs----YHH~~~~l~~~~w~~~~k~~~~~~~~~~~~~Ns~V 148 (184)
+.++ +........+.|++++| .|++|++ |||+.+.+ .+|..+ +..++|+.++++++|++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~fylSK~~EllDTvflvLrkK~lsfLHvYHH~~~~~--~~w~~~-~~~~~~~~~~~~~~N~~V 155 (250)
T PF01151_consen 79 DFDPDSYSSGRVGFWYWLFYLSKYYELLDTVFLVLRKKQLSFLHVYHHASTLL--YCWISY-KYGPGGQIWFIAALNSFV 155 (250)
T ss_pred CCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHhhhhhhhh--hhhhee-eeccccchhHHHHHHHHH
Confidence 3222 22222344566778888 3444777 99999999 999999 777788888889999999
Q ss_pred HHHHHHHHHHHhhCCCccccchhhHhhhhhhhccCC
Q psy11848 149 HVIMYFYYMVSAMGPEYQKYLWWKRHLTTLTVPSLT 184 (184)
Q Consensus 149 H~iMY~YY~l~a~g~~~~~~~~~k~~iT~~Qi~Qf~ 184 (184)
|++||+||+++|+|.| +.++||||+||.+||+||+
T Consensus 156 H~iMY~YY~l~a~g~~-~~~~~~k~~IT~~Qi~QF~ 190 (250)
T PF01151_consen 156 HVIMYSYYFLSALGIR-KVPRWWKKYITSLQIVQFV 190 (250)
T ss_pred HHHHHHHHHHHhcccc-cchhHHHHHHhHHhhhhhH
Confidence 9999999999999975 2336999999999999995
No 3
>PTZ00251 fatty acid elongase; Provisional
Probab=100.00 E-value=4e-42 Score=285.35 Aligned_cols=170 Identities=20% Similarity=0.278 Sum_probs=136.9
Q ss_pred CcccccccCcCCchHHHHHHHHHHHHHHHhhhhhhcC----CCCCc-cchhhhhhhHHHHHHHHHHHHHHHHHhh-----
Q psy11848 5 DPRVNDWFLMESPIPTLVMVGIYLYIVVFLGPWIMAN----RKPFK-LKTVLIVYNAAQVIFSLAMLWEHLMSGW----- 74 (184)
Q Consensus 5 d~~~~~w~l~~~~~~~~~~~~~Yl~~v~~~~~~~M~~----R~p~~-l~~~~~~~N~~l~~~s~~~~~~~~~~~~----- 74 (184)
.+|+++| +++||++++.++++|+++| +.||++||| |||++ ||+++++||++|+++|++++++.++...
T Consensus 14 ~~~~~~w-l~~~~~~~~~i~~~Yl~~V-~~Gp~~M~~~~~~Rkp~~~Lr~~l~~yNl~l~v~s~~~~~~~~~~~~~~~~~ 91 (272)
T PTZ00251 14 GHAVQKW-LASNVDICVYIAAAYLTFV-FKGPQLVDAIFHGNPPVPLIKKCWALWNIGLSVFSMYGVYRVVPPLLNNLRK 91 (272)
T ss_pred cHHHHHH-HHhCCHHHHHHHHHHHHHH-HHHHHHHhhccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4889999 6799999999999999999 699999974 99999 9999999999999999999999875542
Q ss_pred hcceeeeecccCCCCCccceeeeeEEEeeeee------------ccccccc----ccCchhhhhhhhheeeeccccCCCc
Q psy11848 75 LLDYSYKCQPVDYSHNPTALRHLMSGWLLDYS------------YKCQPVD----YSHNPTALRVSFWVIIECFNQGGHG 138 (184)
Q Consensus 75 ~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~s------------~k~~~vs----YHH~~~~l~~~~w~~~~k~~~~~~~ 138 (184)
.|.++..|+..+... ...+...++|++++| .|++|++ |||+++.+ .+|..+ .++++.
T Consensus 92 ~g~~~~~C~~~~~~~--~~~~~~~~~~~f~lsK~~El~DTvF~VLRKKqvsFLHvYHH~~~~~--~~w~~~---~~g~~~ 164 (272)
T PTZ00251 92 YGLHDTLCTFREDEF--YTGKVGVAMGLFSISKVPEFGDTFFLIMGGKKLPFLSWFHHVTIFL--YAWMSY---QQGSSI 164 (272)
T ss_pred cCcceeeecCCCCcc--hhHHHHHHHHHHHHHHHHHHHhHhhhhhcCCCchHHHHHHHHHHHH--HHHHHH---hCCCcH
Confidence 356788897432110 112335677888888 2334777 99999999 999976 244443
Q ss_pred hh-hhhhhhhHHHHHHHHHHHHhhCCCccccchhhHhhhhhhhccCC
Q psy11848 139 TF-SNLINNIVHVIMYFYYMVSAMGPEYQKYLWWKRHLTTLTVPSLT 184 (184)
Q Consensus 139 ~~-~~~~Ns~VH~iMY~YY~l~a~g~~~~~~~~~k~~iT~~Qi~Qf~ 184 (184)
.+ ++++|++||++||+||+++|+|+|. ...||||+||.+||+||+
T Consensus 165 ~~~~~~lNs~VH~iMY~YY~lsa~g~~~-~~~~~kk~IT~lQi~Qfv 210 (272)
T PTZ00251 165 WICAAAMNYFVHSIMYFYFALSEAGFKK-LVKPFAMYITLLQITQMV 210 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhHHHHHHHHHHHHHHH
Confidence 33 5899999999999999999999972 223699999999999985
No 4
>KOG3072|consensus
Probab=100.00 E-value=1.5e-34 Score=236.99 Aligned_cols=168 Identities=23% Similarity=0.292 Sum_probs=139.9
Q ss_pred CcccccccCcCCchHHHHHHHHHHHHHHHhhhhhhcCCCCCccchhhhhhhHHHHHHHHHHHHHHHHHhh-----hccee
Q psy11848 5 DPRVNDWFLMESPIPTLVMVGIYLYIVVFLGPWIMANRKPFKLKTVLIVYNAAQVIFSLAMLWEHLMSGW-----LLDYS 79 (184)
Q Consensus 5 d~~~~~w~l~~~~~~~~~~~~~Yl~~v~~~~~~~M~~R~p~~l~~~~~~~N~~l~~~s~~~~~~~~~~~~-----~~~~~ 79 (184)
+.+++.|+. +++...+.++++|+++| +.|+++|+|||||+|++++.+||.++++||+.+++++.+... .|...
T Consensus 28 ~~~~~~~~~-~~~~~si~is~~Y~v~i-f~~q~fM~~RkpF~L~~pL~lWn~~La~FSi~g~lr~~~~~~~~~~~~Gf~~ 105 (282)
T KOG3072|consen 28 SESVVKFFQ-EHWPLSIHISIAYLVLI-FGGQNFMKNRKPFQLTKPLNLWNFCLAAFSILGALRTIPEFLAVFRAAGFKG 105 (282)
T ss_pred hHHHHHHHH-hccchhHHHHHHHHHHH-HHHHHHHhcCCCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhe
Confidence 345556664 67888899999999999 999999999999999999999999999999999998887642 26677
Q ss_pred eeecccCCCCCccceeeeeEEEeeeee-------------ccccccc---ccCchhhhhhhhheeeeccccCCCchhhhh
Q psy11848 80 YKCQPVDYSHNPTALRHLMSGWLLDYS-------------YKCQPVD---YSHNPTALRVSFWVIIECFNQGGHGTFSNL 143 (184)
Q Consensus 80 ~~C~~~~~~~~~~~~~~~~~~~~~~~s-------------~k~~~vs---YHH~~~~l~~~~w~~~~k~~~~~~~~~~~~ 143 (184)
..|+..+...+.. .+|+|++.+| +|++.+. |||..+.+ ..|+.. +- ..+.+.|++.
T Consensus 106 s~C~~~~~~~~~~----~fW~~~fvlSK~~ElgDT~FiVLRKrPliFlHWYHHi~~~i--y~~~~y-~~-~~a~~rw~i~ 177 (282)
T KOG3072|consen 106 SYCDANNLGLSVS----GFWSWLFVLSKAPELGDTIFIVLRKRPLIFLHWYHHILVLI--YAWHSY-IE-KVAWGRWFIW 177 (282)
T ss_pred eeeecccCCcchH----HHHHHHHHHHhhhhhhceeEEEeccCccEEEechhhheeee--eeeeec-cc-CCcCceEEEE
Confidence 8999987654443 3677777666 4555555 99999999 999988 33 2445678999
Q ss_pred hhhhHHHHHHHHHHHHhhCCCccccchhhHhhhhhhhccCC
Q psy11848 144 INNIVHVIMYFYYMVSAMGPEYQKYLWWKRHLTTLTVPSLT 184 (184)
Q Consensus 144 ~Ns~VH~iMY~YY~l~a~g~~~~~~~~~k~~iT~~Qi~Qf~ 184 (184)
+|.+||++||+||+++|+|+|+|| +..+.||.+||+||+
T Consensus 178 mNy~vHa~MY~YY~lrsl~ir~Pk--~vam~iTtlQi~Qm~ 216 (282)
T KOG3072|consen 178 MNYLVHAFMYSYYALRSLGIRLPK--SVAMAITTLQIVQMV 216 (282)
T ss_pred EehhHHHHHHHHHHHHHcCCCCCh--HHHHHHHHHHHHHHH
Confidence 999999999999999999999875 679999999999984
No 5
>COG5548 Small integral membrane protein [Function unknown]
Probab=58.12 E-value=8.9 Score=27.06 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHhhhhhhcCCCCCc
Q psy11848 21 LVMVGIYLYIVVFLGPWIMANRKPFK 46 (184)
Q Consensus 21 ~~~~~~Yl~~v~~~~~~~M~~R~p~~ 46 (184)
.+..+.=++++ +.++|.||.|||..
T Consensus 58 ~A~~~s~~Ll~-~~~~R~~~sRKpvP 82 (105)
T COG5548 58 LATVVSAALLV-FFALRLVRSRKPVP 82 (105)
T ss_pred hHHHHHHHHHH-hcchhccccCCCcc
Confidence 34444445566 88999999999875
No 6
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=22.94 E-value=1.6e+02 Score=22.46 Aligned_cols=43 Identities=14% Similarity=0.172 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhcCCCCCccchhhhhhhHHHHHHHH
Q psy11848 20 TLVMVGIYLYIVVFLGPWIMANRKPFKLKTVLIVYNAAQVIFSL 63 (184)
Q Consensus 20 ~~~~~~~Yl~~v~~~~~~~M~~R~p~~l~~~~~~~N~~l~~~s~ 63 (184)
.+.++++=++++ +.+-+++|+|.--+.|.+.++==+++.++.+
T Consensus 20 ~~~i~~ll~~l~-~~~~~Y~r~r~~tKyRDL~II~~L~ll~l~g 62 (149)
T PF11694_consen 20 YILIIILLLVLI-FFFIKYLRNRLDTKYRDLSIIALLLLLLLIG 62 (149)
T ss_pred HHHHHHHHHHHH-HHHHHHHHhcCcchhhhHHHHHHHHHHHHHH
Confidence 344445555555 7788999999999999887765444444433
No 7
>PF04835 Pox_A9: A9 protein conserved region; InterPro: IPR006920 This entry represents a family of Chordopoxvirus A9 proteins. Chordopoxvirus belongs to the family Poxviridae and is the cause of vertebrate infections [].
Probab=20.77 E-value=57 Score=20.51 Aligned_cols=11 Identities=36% Similarity=0.721 Sum_probs=8.5
Q ss_pred hhhHHHHHHHH
Q psy11848 145 NNIVHVIMYFY 155 (184)
Q Consensus 145 Ns~VH~iMY~Y 155 (184)
-.+=|.+||+|
T Consensus 3 dl~rH~~myfc 13 (54)
T PF04835_consen 3 DLFRHCFMYFC 13 (54)
T ss_pred HHHHHHHHHHH
Confidence 35679999985
No 8
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=19.44 E-value=3.5e+02 Score=19.34 Aligned_cols=55 Identities=16% Similarity=0.016 Sum_probs=33.0
Q ss_pred CCchHHHHHHHHHHHHHHHhhhhhhcCCCCCccchhhhhhhHHHHHHHHHHHHHHHHH
Q psy11848 15 ESPIPTLVMVGIYLYIVVFLGPWIMANRKPFKLKTVLIVYNAAQVIFSLAMLWEHLMS 72 (184)
Q Consensus 15 ~~~~~~~~~~~~Yl~~v~~~~~~~M~~R~p~~l~~~~~~~N~~l~~~s~~~~~~~~~~ 72 (184)
+||.+....++..++- ....-+.-.+++||.-. .++-|+++|+.+++.+--++.+
T Consensus 2 GS~~Fi~~~~~~~~~W--i~~N~~~~~~~~fDpyP-FilLnl~lS~~Aa~~ap~Ilms 56 (108)
T PF06210_consen 2 GSWTFIIIFTVFLAVW--ILLNILAPPRPAFDPYP-FILLNLVLSLEAAYQAPLILMS 56 (108)
T ss_pred CcHHHHHHHHHHHHHH--HHHHhhccccCCCCCcc-HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566654444333332 33444444445676554 6778999999999877665543
No 9
>MTH00169 ATP8 ATP synthase F0 subunit 8; Provisional
Probab=17.26 E-value=1.7e+02 Score=19.17 Aligned_cols=25 Identities=12% Similarity=0.219 Sum_probs=18.7
Q ss_pred CchHHHHHHHHHHHHHHHhhhhhhc
Q psy11848 16 SPIPTLVMVGIYLYIVVFLGPWIMA 40 (184)
Q Consensus 16 ~~~~~~~~~~~Yl~~v~~~~~~~M~ 40 (184)
-.|..+...++|.+++...+|++.+
T Consensus 13 ~~Wl~i~f~~ly~l~s~~iLPri~~ 37 (67)
T MTH00169 13 YIWTLIILFFLFSLLVNYILPKIQQ 37 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677888888888789998754
No 10
>PF15110 TMEM141: TMEM141 protein family; PDB: 2LOR_A.
Probab=16.96 E-value=3.5e+02 Score=19.04 Aligned_cols=29 Identities=14% Similarity=0.310 Sum_probs=21.4
Q ss_pred HhhhhhhcCCCCCccchhhhhhhHHHHHHHHHHH
Q psy11848 33 FLGPWIMANRKPFKLKTVLIVYNAAQVIFSLAML 66 (184)
Q Consensus 33 ~~~~~~M~~R~p~~l~~~~~~~N~~l~~~s~~~~ 66 (184)
+.++++.++|=|+.++ ||++.+++.+.++
T Consensus 43 f~~Q~~iqrrlpYp~q-----~~~LVS~v~~sv~ 71 (94)
T PF15110_consen 43 FFLQKAIQRRLPYPFQ-----WNILVSVVVASVA 71 (94)
T ss_dssp HHHHHHHHTTSSSSS------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCC-----chhHHHHHHhhhh
Confidence 6789999999999887 6777776655444
Done!