Query psy11848
Match_columns 184
No_of_seqs 153 out of 1204
Neff 7.5
Searched_HMMs 29240
Date Fri Aug 16 20:29:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11848.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11848hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wwb_C SEC61BETA, protein tran 15.4 1.3E+02 0.0043 20.3 2.9 33 5-40 60-92 (96)
2 2koe_A Human cannabinoid recep 11.5 29 0.00098 18.5 -1.0 16 140-155 8-23 (40)
3 2knu_A E1_peptide, genome poly 9.0 95 0.0033 16.2 0.5 21 9-29 5-25 (29)
4 2ww9_C Protein transport prote 9.0 2.1E+02 0.0073 18.8 2.4 30 6-38 52-81 (87)
5 3arc_L Photosystem II reaction 8.5 3E+02 0.01 15.0 3.3 25 41-65 6-30 (37)
6 2lor_A Transmembrane protein 1 11.5 76 0.0026 21.8 0.0 28 33-65 46-73 (108)
7 4b0f_A C4B-binding protein alp 8.1 1.3E+02 0.0044 18.8 1.0 27 33-59 18-45 (65)
8 1p58_D Envelope protein M; fla 6.9 95 0.0033 19.9 -0.1 18 6-24 30-47 (75)
9 3arc_F Cytochrome B559 subunit 6.7 1.5E+02 0.005 16.9 0.6 11 172-182 33-43 (44)
10 3hi2_B Motility quorum-sensing 6.6 1E+02 0.0036 20.9 -0.0 12 39-50 4-16 (101)
No 1
>2wwb_C SEC61BETA, protein transport protein SEC61 subunit beta; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=15.43 E-value=1.3e+02 Score=20.34 Aligned_cols=33 Identities=21% Similarity=0.275 Sum_probs=24.0
Q ss_pred CcccccccCcCCchHHHHHHHHHHHHHHHhhhhhhc
Q psy11848 5 DPRVNDWFLMESPIPTLVMVGIYLYIVVFLGPWIMA 40 (184)
Q Consensus 5 d~~~~~w~l~~~~~~~~~~~~~Yl~~v~~~~~~~M~ 40 (184)
|.+....=+ +|..++.+.+++.++| +.+..+-|
T Consensus 60 ~dds~GlKV--~P~~VLv~sl~Fi~~V-i~Lhi~~K 92 (96)
T 2wwb_C 60 TEDSPGLKV--GPVPVLVMSLLFIASV-FMLHIWGK 92 (96)
T ss_dssp -CCSCCCCC--SSCSHHHHHHHHHHHH-HHHSCSSS
T ss_pred ecCCCceEE--CCEEehhhHHHHHHHH-HHHHHhhh
Confidence 335555554 6888999999999999 87776644
No 2
>2koe_A Human cannabinoid receptor 1 - helix 7/8 peptide; GPCR, HCB1, membrane protein, signaling protein; NMR {Homo sapiens}
Probab=11.55 E-value=29 Score=18.49 Aligned_cols=16 Identities=31% Similarity=0.488 Sum_probs=13.1
Q ss_pred hhhhhhhhHHHHHHHH
Q psy11848 140 FSNLINNIVHVIMYFY 155 (184)
Q Consensus 140 ~~~~~Ns~VH~iMY~Y 155 (184)
+.+.+|+.+.++.|+.
T Consensus 8 ~l~~~ns~lNPiIY~~ 23 (40)
T 2koe_A 8 MLCLLNSTVNPIIYAL 23 (40)
T ss_dssp HHHHHHHHSSTTTTBT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4577899999999974
No 3
>2knu_A E1_peptide, genome polyprotein; HCV, pretransmembrane, glycoprotein, envelope protein, transmembrane, membrane protein; NMR {Hepatitis c virus}
Probab=8.97 E-value=95 Score=16.18 Aligned_cols=21 Identities=29% Similarity=0.316 Sum_probs=14.9
Q ss_pred ccccCcCCchHHHHHHHHHHH
Q psy11848 9 NDWFLMESPIPTLVMVGIYLY 29 (184)
Q Consensus 9 ~~w~l~~~~~~~~~~~~~Yl~ 29 (184)
..|-.|.++.+....+++|+.
T Consensus 5 mawdmMmnwspt~~~~~a~~l 25 (29)
T 2knu_A 5 MAWDMMMNWSPTAALVVAQLL 25 (29)
T ss_dssp TGGGTTCCSCCTTHHHHHHHC
T ss_pred hHHHHHhccCchHHHHHHHHH
Confidence 356667788888777777764
No 4
>2ww9_C Protein transport protein SEB2; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_C
Probab=8.97 E-value=2.1e+02 Score=18.83 Aligned_cols=30 Identities=10% Similarity=0.190 Sum_probs=17.4
Q ss_pred cccccccCcCCchHHHHHHHHHHHHHHHhhhhh
Q psy11848 6 PRVNDWFLMESPIPTLVMVGIYLYIVVFLGPWI 38 (184)
Q Consensus 6 ~~~~~w~l~~~~~~~~~~~~~Yl~~v~~~~~~~ 38 (184)
.++.++=+ +|..++.+.++|..+| +.+..+
T Consensus 52 dds~GlKV--~P~~VLv~sl~FIa~V-ilLHI~ 81 (87)
T 2ww9_C 52 DEANGFRV--DSLVVLFLSVGFIFSV-IALHLL 81 (87)
T ss_dssp ------CC--CHHHHHHHHHHHHHHH-HHC---
T ss_pred cCCCceEE--cCeeehhhHHHHHHHH-HHHHHh
Confidence 33444443 6888999999999998 776654
No 5
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=8.51 E-value=3e+02 Score=14.97 Aligned_cols=25 Identities=16% Similarity=0.319 Sum_probs=18.8
Q ss_pred CCCCCccchhhhhhhHHHHHHHHHH
Q psy11848 41 NRKPFKLKTVLIVYNAAQVIFSLAM 65 (184)
Q Consensus 41 ~R~p~~l~~~~~~~N~~l~~~s~~~ 65 (184)
|++|.+|.+--..|-++++..-+..
T Consensus 6 n~q~VELNRTSLy~GLLlifvlavl 30 (37)
T 3arc_L 6 NRQPVELNRTSLYLGLLLILVLALL 30 (37)
T ss_dssp TCCCBCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCcceechhhHHHHHHHHHHHHHH
Confidence 5788999998888888777654443
No 6
>2lor_A Transmembrane protein 141; helical bundle; NMR {Homo sapiens}
Probab=11.52 E-value=76 Score=21.79 Aligned_cols=28 Identities=11% Similarity=0.256 Sum_probs=21.8
Q ss_pred HhhhhhhcCCCCCccchhhhhhhHHHHHHHHHH
Q psy11848 33 FLGPWIMANRKPFKLKTVLIVYNAAQVIFSLAM 65 (184)
Q Consensus 33 ~~~~~~M~~R~p~~l~~~~~~~N~~l~~~s~~~ 65 (184)
+.++++.++|=|+.++ ||++.+++.+-+
T Consensus 46 f~~Q~~vqrklpYp~q-----wniLVs~v~~sv 73 (108)
T 2lor_A 46 FGLQMFIQRKFPYPLQ-----WSLLVAVVAGSV 73 (108)
Confidence 6688889888898877 788887766544
No 7
>4b0f_A C4B-binding protein alpha chain; complement system, immune system; 2.80A {Homo sapiens}
Probab=8.10 E-value=1.3e+02 Score=18.77 Aligned_cols=27 Identities=26% Similarity=0.337 Sum_probs=21.4
Q ss_pred HhhhhhhcCC-CCCccchhhhhhhHHHH
Q psy11848 33 FLGPWIMANR-KPFKLKTVLIVYNAAQV 59 (184)
Q Consensus 33 ~~~~~~M~~R-~p~~l~~~~~~~N~~l~ 59 (184)
..|.++|+-- .|.+.|..+.+|-+.+=
T Consensus 18 ~~G~klmqCLp~p~dVk~ALEvYKlsLE 45 (65)
T 4b0f_A 18 LTGKRLMQCLPNPEDVKMALEVYKLSLE 45 (65)
T ss_dssp HHHHHHTTSSSSHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHhcCCCHHHHhHHhheeechhh
Confidence 6799999875 47889999999986553
No 8
>1p58_D Envelope protein M; flavivirus, flaviviridae, glycoprotein E from borne encephalitis virus, membrane protein M, cryo-EM, ICOS virus; 9.50A {Dengue virus 2 puerto rico} SCOP: i.17.1.1
Probab=6.86 E-value=95 Score=19.91 Aligned_cols=18 Identities=28% Similarity=0.621 Sum_probs=12.6
Q ss_pred cccccccCcCCchHHHHHH
Q psy11848 6 PRVNDWFLMESPIPTLVMV 24 (184)
Q Consensus 6 ~~~~~w~l~~~~~~~~~~~ 24 (184)
.|+++|.+ .||...+.++
T Consensus 30 ~kvE~Wil-rNp~~al~a~ 47 (75)
T 1p58_D 30 QRIETWIL-RHPGFTIMAA 47 (75)
T ss_pred HHHHHHHH-HChHHHHHHH
Confidence 57789997 6887764443
No 9
>3arc_F Cytochrome B559 subunit beta; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1izl_F* 3a0b_F* 3a0h_F* 1w5c_F* 3kzi_F* 3bz1_F* 1s5l_F* 2axt_F* 3bz2_F* 3prq_F* 3prr_F*
Probab=6.65 E-value=1.5e+02 Score=16.87 Aligned_cols=11 Identities=0% Similarity=0.021 Sum_probs=6.6
Q ss_pred hHhhhhhhhcc
Q psy11848 172 KRHLTTLTVPS 182 (184)
Q Consensus 172 k~~iT~~Qi~Q 182 (184)
---||.+|-+|
T Consensus 33 lGai~AmQfiq 43 (44)
T 3arc_F 33 LGAIAAMQFIQ 43 (44)
T ss_dssp HHHHHHHTTCC
T ss_pred ccHHHHHHHhh
Confidence 34566666665
No 10
>3hi2_B Motility quorum-sensing regulator MQSR; toxin-antitoxin system, Zn-binding protein, MQSA, YGIU B3022, B3021, stress response; 2.00A {Escherichia coli k-12}
Probab=6.59 E-value=1e+02 Score=20.92 Aligned_cols=12 Identities=42% Similarity=0.708 Sum_probs=8.4
Q ss_pred hcCCCC-Cccchh
Q psy11848 39 MANRKP-FKLKTV 50 (184)
Q Consensus 39 M~~R~p-~~l~~~ 50 (184)
|++|+| ++|..+
T Consensus 4 MEKrtPhy~L~~i 16 (101)
T 3hi2_B 4 MEKRTPHTRLSQV 16 (101)
T ss_dssp CEESSCSSCHHHH
T ss_pred CccCCCCCcHHHH
Confidence 888888 676544
Done!