Query psy11848
Match_columns 184
No_of_seqs 153 out of 1204
Neff 7.5
Searched_HMMs 13730
Date Fri Aug 16 20:29:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11848.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/11848hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtl1 f.23.31.1 (L:1-37) Pho 15.4 76 0.0056 16.0 3.3 25 41-65 6-30 (37)
2 d2axtf1 f.23.38.1 (F:11-45) Cy 11.2 35 0.0025 17.1 0.6 11 172-182 24-34 (35)
3 d1zx3a1 a.43.1.6 (A:10-95) Hyp 5.8 2E+02 0.014 16.5 2.5 25 2-31 3-27 (86)
4 d2iuba2 f.17.3.1 (A:286-349) M 5.7 1.9E+02 0.014 15.7 2.5 7 37-43 58-64 (64)
5 d1u19a_ f.13.1.2 (A:) Rhodopsi 5.6 1.3E+02 0.0094 21.2 2.0 16 141-156 294-309 (348)
6 d1khva_ e.8.1.4 (A:) Viral RNA 5.3 2.2E+02 0.016 22.4 3.4 25 131-156 300-324 (497)
7 d1xr5a_ e.8.1.4 (A:) Viral RNA 5.1 2.2E+02 0.016 22.0 3.3 30 131-161 283-312 (460)
8 d1ra6a_ e.8.1.4 (A:) Viral RNA 4.8 2.4E+02 0.017 21.9 3.3 28 131-159 284-311 (461)
9 d2glia2 g.37.1.1 (A:135-167) F 4.5 1.6E+02 0.012 14.5 1.2 14 41-54 13-26 (33)
10 d2d8za2 g.39.1.3 (A:33-64) Fou 4.5 52 0.0038 16.3 -0.8 15 34-48 10-25 (32)
No 1
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=15.39 E-value=76 Score=15.97 Aligned_cols=25 Identities=16% Similarity=0.319 Sum_probs=18.5
Q ss_pred CCCCCccchhhhhhhHHHHHHHHHH
Q psy11848 41 NRKPFKLKTVLIVYNAAQVIFSLAM 65 (184)
Q Consensus 41 ~R~p~~l~~~~~~~N~~l~~~s~~~ 65 (184)
|++|.+|.+--..|-++++..-+..
T Consensus 6 n~q~veLNrtsLy~GlLlifvl~vL 30 (37)
T d2axtl1 6 NRQPVELNRTSLYLGLLLILVLALL 30 (37)
T ss_dssp SCCCBCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCccccchhhHHHHHHHHHHHHHH
Confidence 6789999998888888776544433
No 2
>d2axtf1 f.23.38.1 (F:11-45) Cytochrome b559 subunit beta, PsbF {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=11.16 E-value=35 Score=17.14 Aligned_cols=11 Identities=0% Similarity=0.021 Sum_probs=7.4
Q ss_pred hHhhhhhhhcc
Q psy11848 172 KRHLTTLTVPS 182 (184)
Q Consensus 172 k~~iT~~Qi~Q 182 (184)
---||.+|.+|
T Consensus 24 lGai~aMqfiq 34 (35)
T d2axtf1 24 LGAIAAMQFIQ 34 (35)
T ss_dssp HHHHHHHTTCC
T ss_pred HhHHHHHHHhh
Confidence 34577777776
No 3
>d1zx3a1 a.43.1.6 (A:10-95) Hypothetical protein NE0241 {Nitrosomonas europaea [TaxId: 915]}
Probab=5.78 E-value=2e+02 Score=16.50 Aligned_cols=25 Identities=32% Similarity=0.460 Sum_probs=17.8
Q ss_pred CCCCcccccccCcCCchHHHHHHHHHHHHH
Q psy11848 2 QYIDPRVNDWFLMESPIPTLVMVGIYLYIV 31 (184)
Q Consensus 2 ~~~d~~~~~w~l~~~~~~~~~~~~~Yl~~v 31 (184)
+.+||--++|.+ ++.... ++||+-.
T Consensus 3 qqpdpmrknwim-enmdsg----viylles 27 (86)
T d1zx3a1 3 QQPDPMRKNWIM-ENMDSG----VIYLLES 27 (86)
T ss_dssp CCCCCSCCCCCC-CSCCHH----HHHHHHH
T ss_pred CCCChhHHhHHH-hccccc----hHHHHHH
Confidence 457888999996 666654 5676665
No 4
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=5.71 E-value=1.9e+02 Score=15.72 Aligned_cols=7 Identities=14% Similarity=0.221 Sum_probs=3.2
Q ss_pred hhhcCCC
Q psy11848 37 WIMANRK 43 (184)
Q Consensus 37 ~~M~~R~ 43 (184)
.++|+||
T Consensus 58 ~~f~rkk 64 (64)
T d2iuba2 58 VYFKKKK 64 (64)
T ss_dssp TTTTSCC
T ss_pred HHHhccC
Confidence 3445543
No 5
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.56 E-value=1.3e+02 Score=21.23 Aligned_cols=16 Identities=6% Similarity=0.214 Sum_probs=13.4
Q ss_pred hhhhhhhHHHHHHHHH
Q psy11848 141 SNLINNIVHVIMYFYY 156 (184)
Q Consensus 141 ~~~~Ns~VH~iMY~YY 156 (184)
.+.+|+.++++.|.+.
T Consensus 294 l~~~ns~iNPiIY~~~ 309 (348)
T d1u19a_ 294 FAKTSAVYNPVIYIMM 309 (348)
T ss_dssp HGGGGGTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhc
Confidence 4569999999999764
No 6
>d1khva_ e.8.1.4 (A:) Viral RNA polymerase {Rabbit hemorrhagic disease virus [TaxId: 11976]}
Probab=5.29 E-value=2.2e+02 Score=22.38 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=17.9
Q ss_pred ccccCCCchhhhhhhhhHHHHHHHHH
Q psy11848 131 CFNQGGHGTFSNLINNIVHVIMYFYY 156 (184)
Q Consensus 131 k~~~~~~~~~~~~~Ns~VH~iMY~YY 156 (184)
+..|+|+. .-+.+||++|.||..|=
T Consensus 300 gG~PSG~p-~Tsi~NSi~N~i~i~~a 324 (497)
T d1khva_ 300 RGLPSGMP-FTSVINSICHWLLWSAA 324 (497)
T ss_dssp SCCCTTST-THHHHHHHHHHHHHHHH
T ss_pred CCCCCCCc-eeehhhhHHHHHHHHHH
Confidence 34556664 56889999999876553
No 7
>d1xr5a_ e.8.1.4 (A:) Viral RNA polymerase {Human rhinovirus 14, HRV-14 [TaxId: 12131]}
Probab=5.06 E-value=2.2e+02 Score=22.00 Aligned_cols=30 Identities=13% Similarity=0.163 Sum_probs=21.5
Q ss_pred ccccCCCchhhhhhhhhHHHHHHHHHHHHhh
Q psy11848 131 CFNQGGHGTFSNLINNIVHVIMYFYYMVSAM 161 (184)
Q Consensus 131 k~~~~~~~~~~~~~Ns~VH~iMY~YY~l~a~ 161 (184)
.-.|+|+. ..+.+||++|.++..|=++.+.
T Consensus 283 gGlPSG~p-~Tsi~NSi~N~i~i~~a~~~~~ 312 (460)
T d1xr5a_ 283 GGMPSGCS-GTSIFNSMINNIIIRTLILDAY 312 (460)
T ss_dssp SCCCTTSS-SHHHHHHHHHHHHHHHHHHHHC
T ss_pred CccCCCCC-eeeehhhHHHHHHHHHHHHHHc
Confidence 44567764 5788999999998776555543
No 8
>d1ra6a_ e.8.1.4 (A:) Viral RNA polymerase {Poliovirus type 1, strain Mahoney [TaxId: 12080]}
Probab=4.83 E-value=2.4e+02 Score=21.86 Aligned_cols=28 Identities=7% Similarity=0.133 Sum_probs=18.9
Q ss_pred ccccCCCchhhhhhhhhHHHHHHHHHHHH
Q psy11848 131 CFNQGGHGTFSNLINNIVHVIMYFYYMVS 159 (184)
Q Consensus 131 k~~~~~~~~~~~~~Ns~VH~iMY~YY~l~ 159 (184)
.-.|+|+. ..+.+||++|.++..|=++.
T Consensus 284 ~GlPSG~~-~T~iiNSi~N~i~i~~a~~~ 311 (461)
T d1ra6a_ 284 GGMPSGCS-GTSIFNSMINNLIIRTLLLK 311 (461)
T ss_dssp SCCCTBST-THHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCC-eeEeehhHHHHHHHHHHHHH
Confidence 44567764 57889999999874443333
No 9
>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.48 E-value=1.6e+02 Score=14.46 Aligned_cols=14 Identities=36% Similarity=0.655 Sum_probs=8.8
Q ss_pred CCCCCccchhhhhh
Q psy11848 41 NRKPFKLKTVLIVY 54 (184)
Q Consensus 41 ~R~p~~l~~~~~~~ 54 (184)
+-+||+-+.-++.|
T Consensus 13 ~~~pf~a~YkLv~H 26 (33)
T d2glia2 13 ELRPFKAQYMLVVH 26 (33)
T ss_dssp TTCCCSSHHHHHHH
T ss_pred CCCcchhHHHHHHH
Confidence 34688777666654
No 10
>d2d8za2 g.39.1.3 (A:33-64) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.47 E-value=52 Score=16.33 Aligned_cols=15 Identities=13% Similarity=0.189 Sum_probs=9.1
Q ss_pred hhhhh-hcCCCCCccc
Q psy11848 34 LGPWI-MANRKPFKLK 48 (184)
Q Consensus 34 ~~~~~-M~~R~p~~l~ 48 (184)
.|+++ ||+-+|+=++
T Consensus 10 ~GQry~~rd~~PyC~~ 25 (32)
T d2d8za2 10 SGQRFTARDDFAYCLN 25 (32)
T ss_dssp TTSCCEESSSSEECHH
T ss_pred cCceeeecCCCeehHH
Confidence 45554 7777776443
Done!