RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11848
         (184 letters)



>d1e8ca2 c.59.1.1 (A:338-497) UDP-N-acetylmuramyl tripeptide
           synthetase MurE {Escherichia coli [TaxId: 562]}
          Length = 160

 Score = 29.5 bits (65), Expect = 0.15
 Identities = 8/90 (8%), Positives = 19/90 (21%), Gaps = 3/90 (3%)

Query: 85  VDYSHNPTALRHLMSGWLLDYSYKCQPVDYSHNPTALRVSFWVIIECFNQGGHGTFSNLI 144
           VDY+H P AL   +        +    +         R      +           + + 
Sbjct: 18  VDYAHTPDALEKALQAA---RLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVT 74

Query: 145 NNIVHVIMYFYYMVSAMGPEYQKYLWWKRH 174
           ++          +   +             
Sbjct: 75  DDNPRTEEPRAIINDILAGMLDAGHAKVME 104


>d1o5za1 c.59.1.2 (A:294-430) Folylpolyglutamate synthetase,
           C-terminal domain {Thermotoga maritima [TaxId: 2336]}
          Length = 137

 Score = 27.1 bits (59), Expect = 0.83
 Identities = 6/32 (18%), Positives = 13/32 (40%)

Query: 85  VDYSHNPTALRHLMSGWLLDYSYKCQPVDYSH 116
           +D +HNP     L+    L ++ +   +    
Sbjct: 15  LDGAHNPHGAESLVRSLKLYFNGEPLSLVIGI 46



 Score = 24.8 bits (53), Expect = 4.7
 Identities = 7/61 (11%), Positives = 17/61 (27%), Gaps = 1/61 (1%)

Query: 112 VDYSHNPTALR-VSFWVIIECFNQGGHGTFSNLINNIVHVIMYFYYMVSAMGPEYQKYLW 170
           +D +HNP     +   + +    +        L +     I+  Y  +       +    
Sbjct: 15  LDGAHNPHGAESLVRSLKLYFNGEPLSLVIGILDDKNREDILRKYTGIFERVIVTRVPSP 74

Query: 171 W 171
            
Sbjct: 75  R 75


>d1j6ua2 c.59.1.1 (A:296-446) UDP-N-acetylmuramate-alanine ligase
           MurC {Thermotoga maritima [TaxId: 2336]}
          Length = 151

 Score = 26.8 bits (58), Expect = 1.0
 Identities = 7/42 (16%), Positives = 16/42 (38%)

Query: 85  VDYSHNPTALRHLMSGWLLDYSYKCQPVDYSHNPTALRVSFW 126
            DY+H P  +R+L+      +  +   V +  +  +      
Sbjct: 21  DDYAHTPDEIRNLLQTAKEVFENEKIVVIFQPHRYSRLERED 62



 Score = 26.0 bits (56), Expect = 2.1
 Identities = 6/58 (10%), Positives = 16/58 (27%), Gaps = 1/58 (1%)

Query: 112 VDYSHNPTALRVSFWVIIECFNQGGHGTFSNLINNIVHVIMYFYYMVSAMGPEYQKYL 169
            DY+H P  +R +     +   +          +    +         A+    +  +
Sbjct: 21  DDYAHTPDEIR-NLLQTAKEVFENEKIVVIFQPHRYSRLEREDGNFAKALQLADEVVV 77


>d1vgya2 d.58.19.1 (A:181-293) Succinyl-diaminopimelate
           desuccinylase {Neisseria meningitidis [TaxId: 487]}
          Length = 113

 Score = 25.4 bits (55), Expect = 2.2
 Identities = 7/57 (12%), Positives = 16/57 (28%)

Query: 124 SFWVIIECFNQGGHGTFSNLINNIVHVIMYFYYMVSAMGPEYQKYLWWKRHLTTLTV 180
           S    +    + GH  + +L  N VH        ++    +     +         +
Sbjct: 2   SLSGNLTVKGKQGHIAYPHLAINPVHTFAPALLELTQEVWDEGNEYFPPTSFQISNI 58


>d1sh0a_ e.8.1.4 (A:) Viral RNA polymerase {Norwalk virus [TaxId:
           11983]}
          Length = 502

 Score = 25.3 bits (55), Expect = 4.6
 Identities = 17/162 (10%), Positives = 40/162 (24%), Gaps = 19/162 (11%)

Query: 24  VGIYLYIVVFLGP---WIMANRKPFKLKTVLIVYNAAQVIFS-LAMLWEHLMSGWLLDYS 79
           +   +      G     +  +     ++  + +     +IF   +    H       DYS
Sbjct: 184 LATMIRCARAFGGLMDELKTHCVTLPIRVGMNMNEDGPIIFERHSRYRYHYD----ADYS 239

Query: 80  YKCQPVDYSHNPTALRHLMSGWLLDYSYKCQPV-----DYSHNPTALRVSFWVIIECFNQ 134
                 D +     L   +   ++ +S +         D           F + I     
Sbjct: 240 ----RWDSTQQRAVLAAALEI-MVKFSSEPHLAQVVAEDLLSPSVVDVGDFTISINEGLP 294

Query: 135 GGHGTFSNLINNIVHVIMYFYYMVSAMGPEYQKYLWWKRHLT 176
            G    ++  N+I H ++    +                   
Sbjct: 295 SGVP-CTSQWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSF 335


>d1vqoe1 d.141.1.1 (E:1-79) Ribosomal protein L6 {Archaeon
           Haloarcula marismortui [TaxId: 2238]}
          Length = 79

 Score = 23.3 bits (50), Expect = 7.8
 Identities = 6/20 (30%), Positives = 8/20 (40%)

Query: 130 ECFNQGGHGTFSNLINNIVH 149
                   GTF + I N+ H
Sbjct: 55  NAKTMSTIGTFQSHIENMFH 74


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.140    0.479 

Gapped
Lambda     K      H
   0.267   0.0457    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 778,609
Number of extensions: 35054
Number of successful extensions: 116
Number of sequences better than 10.0: 1
Number of HSP's gapped: 115
Number of HSP's successfully gapped: 19
Length of query: 184
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 104
Effective length of database: 1,309,196
Effective search space: 136156384
Effective search space used: 136156384
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.7 bits)